AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081400 MtrunA17_Chr1g0193851 96.733 551 12 1 1 545 1 551 0.0 1076
Msa0081400 MtrunA17_Chr7g0226261 29.817 493 303 15 73 539 16 491 7.46e-51 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081400 AT4G01690.1 77.264 541 109 5 12 545 4 537 0.0 835
Msa0081400 AT4G01690.2 72.643 541 103 6 12 545 4 506 0.0 766
Msa0081400 AT5G14220.1 28.163 490 312 13 75 539 21 495 1.14e-48 176
Msa0081400 AT5G14220.4 28.163 490 312 13 75 539 69 543 1.87e-48 177
Msa0081400 AT5G14220.2 28.247 485 288 15 75 539 21 465 1.62e-46 170
Msa0081400 AT5G14220.3 26.622 447 292 12 118 539 2 437 1.41e-39 150
Msa0081400 AT5G14220.5 26.622 447 292 12 118 539 2 437 1.41e-39 150

Find 203 sgRNAs with CRISPR-Local

Find 477 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTCAAAATCTACAAAA+TGG 0.183867 1_2:-59936929 None:intergenic
TGCTCAGGATCCAATTGTTT+TGG 0.225364 1_2:+59936557 Msa0081400:CDS
CAAAATGGTGGTAGCATTAT+TGG 0.232913 1_2:+59934087 Msa0081400:CDS
CCTGAGCATTTGGATTTATA+AGG 0.239671 1_2:-59936542 None:intergenic
ATTGGAGGGGCTACCAATTC+TGG 0.258952 1_2:+59935968 Msa0081400:CDS
GATTTGAGGGGCTGTTCCTT+GGG 0.259606 1_2:+59936670 Msa0081400:CDS
CGGAGAAGGGTTTGAGAGGG+TGG 0.262547 1_2:-59931342 None:intergenic
TGCAAAGAAACAACTCCTTC+TGG 0.269612 1_2:-59934510 None:intergenic
TGGAGAGAGATGGGTTTCTT+TGG 0.273128 1_2:+59931667 Msa0081400:CDS
AGATTTATTGTGTTAGGTTC+TGG 0.274766 1_2:+59936832 Msa0081400:three_prime_UTR
TCTCTCCTGTATTGCTTTGA+AGG 0.274882 1_2:-59934115 None:intergenic
GGCAAGATCAGGGCTGGCTT+TGG 0.280653 1_2:+59932624 Msa0081400:CDS
GGCAAATCAGTTGGCTTTCC+CGG 0.284184 1_2:-59932576 None:intergenic
TTCTGGGTGGCTTCTGTTAC+GGG 0.285192 1_2:+59936849 Msa0081400:three_prime_UTR
TCTGATCTAATGGCTTCTTT+TGG 0.297997 1_2:-59935645 None:intergenic
TCAAATATGCATATTCTGTT+TGG 0.302457 1_2:+59937015 Msa0081400:three_prime_UTR
ACAATTGGATCCTGAGCATT+TGG 0.304286 1_2:-59936552 None:intergenic
GATGGTGAGTTGAAGGGATT+TGG 0.305933 1_2:+59935678 Msa0081400:CDS
TTAAGTATGAAAGCAGCTTT+TGG 0.310156 1_2:+59934045 Msa0081400:CDS
TTTGAAGGACGATCTTGTTT+TGG 0.318825 1_2:+59932500 Msa0081400:intron
GATTTATTGTGTTAGGTTCT+GGG 0.321154 1_2:+59936833 Msa0081400:three_prime_UTR
GCCTCGGTAACAACAACATT+GGG 0.323168 1_2:-59931612 None:intergenic
GCAACATGGTAAGTCCCTTC+TGG 0.335545 1_2:-59934286 None:intergenic
TCAGAAGGTTGAAAACTATT+AGG 0.342704 1_2:-59931699 None:intergenic
CTTCCAGGTGGTGCTCGGTT+AGG 0.346004 1_2:-59935926 None:intergenic
CCATTCCACAACACAAATCT+AGG 0.348854 1_2:-59932537 None:intergenic
GGATTTGAGGGGCTGTTCCT+TGG 0.351474 1_2:+59936669 Msa0081400:CDS
AATTATTTCAAAACATTGTA+TGG 0.351781 1_2:-59936963 None:intergenic
TTTATCAGATTTATTGTGTT+AGG 0.353203 1_2:+59936826 Msa0081400:three_prime_UTR
ACAGTTTGACCCTTTGGCTT+TGG 0.353786 1_2:-59934254 None:intergenic
TACCTAATGTTTGCACTCCT+TGG 0.364807 1_2:-59935719 None:intergenic
TGAGTATTGGTGGCAAGATC+AGG 0.365761 1_2:+59932613 Msa0081400:CDS
GAGTTCGTGCGTCGAAATCT+TGG 0.366392 1_2:+59932834 Msa0081400:CDS
GTTCTGGGTGGCTTCTGTTA+CGG 0.368455 1_2:+59936848 Msa0081400:three_prime_UTR
TTCTTTGACTTAATGAGTAT+TGG 0.369041 1_2:+59932600 Msa0081400:CDS
GTGAAGGTGGAGAAAGAAGG+AGG 0.371679 1_2:-59931293 None:intergenic
GTTTGCTTGCCACTTGCAAT+TGG 0.372185 1_2:-59931174 None:intergenic
TGTATGGATTTACATATATC+AGG 0.376089 1_2:-59936947 None:intergenic
GTAACAAGGTGAAGTTATCT+TGG 0.380123 1_2:+59934430 Msa0081400:CDS
GCTATTCCACAGTTCTTAGT+TGG 0.382466 1_2:+59936600 Msa0081400:CDS
CAGGTCAAAATCTACAAAAT+GGG 0.383515 1_2:-59936928 None:intergenic
GAAATGGAAACTGCCGCAAC+TGG 0.385344 1_2:-59935618 None:intergenic
GCAAAGAAACAACTCCTTCT+GGG 0.387031 1_2:-59934509 None:intergenic
TTGAATTGGAGGAGGGGAAA+GGG 0.388930 1_2:-59931380 None:intergenic
TATCAAGCATTCTGATCTAA+TGG 0.392972 1_2:-59935655 None:intergenic
GGAGAGAGATGGGTTTCTTT+GGG 0.394520 1_2:+59931668 Msa0081400:CDS
TGGCTCTGACCTGAACAAAA+AGG 0.394707 1_2:-59932885 None:intergenic
CTTTGATAAAATCCCAGAAT+TGG 0.395418 1_2:-59935981 None:intergenic
CTATGTGTCTGGTGTTGCCT+TGG 0.396049 1_2:+59936698 Msa0081400:CDS
AGTTCGTGCGTCGAAATCTT+GGG 0.397568 1_2:+59932835 Msa0081400:CDS
TTCAAGAGTAGAACCCTTCC+AGG 0.398239 1_2:-59935941 None:intergenic
TTCCAGGTGGTGCTCGGTTA+GGG 0.398524 1_2:-59935925 None:intergenic
GATCCAACAGTTTGACCCTT+TGG 0.399991 1_2:-59934260 None:intergenic
ACTTTGTCATTACAATGAAA+TGG 0.400400 1_2:-59936804 None:intergenic
GATGGGTTTCTTTGGGAAGA+AGG 0.407260 1_2:+59931675 Msa0081400:CDS
GGTTTGAGAGGGTGGGAAGA+AGG 0.407669 1_2:-59931334 None:intergenic
GGGAAAGGGGAATGGAGATG+AGG 0.409681 1_2:-59931366 None:intergenic
TACTGTTACTGAAACTTAAC+CGG 0.413758 1_2:-59931217 None:intergenic
ACCACCTCAAAATCAAATTC+CGG 0.416364 1_2:+59931495 Msa0081400:CDS
TTGGAGGGGCTACCAATTCT+GGG 0.425638 1_2:+59935969 Msa0081400:CDS
TGGGAAATTGAGGCCGGTGC+CGG 0.426371 1_2:+59932557 Msa0081400:CDS
GTGGTGCTCGGTTAGGGAAA+AGG 0.428455 1_2:-59935919 None:intergenic
AATGGAGATGAGGGCGGAGA+AGG 0.430870 1_2:-59931356 None:intergenic
AGTATTAGTAAACTGGATAG+TGG 0.439960 1_2:+59934462 Msa0081400:CDS
CTAGATTTGTGTTGTGGAAT+GGG 0.440359 1_2:+59932538 Msa0081400:CDS
AGGGCTGGCTTTGGAGCACT+TGG 0.442410 1_2:+59932633 Msa0081400:CDS
TACCTAGCAGAAATTGCGTT+TGG 0.443372 1_2:-59934308 None:intergenic
TGGAGGAGGGGAAAGGGGAA+TGG 0.448268 1_2:-59931374 None:intergenic
ATGGAGATGAGGGCGGAGAA+GGG 0.448458 1_2:-59931355 None:intergenic
GGAAAGGGGAATGGAGATGA+GGG 0.452855 1_2:-59931365 None:intergenic
GAAGGTGGAGAAAGAAGGAG+GGG 0.453418 1_2:-59931291 None:intergenic
TTTGAATTGGAGGAGGGGAA+AGG 0.454290 1_2:-59931381 None:intergenic
AAGGGGAATGGAGATGAGGG+CGG 0.459680 1_2:-59931362 None:intergenic
TCAGTTGGCTTTCCCGGCAC+CGG 0.460917 1_2:-59932570 None:intergenic
TACTCTTGAATTACATTGGA+GGG 0.461041 1_2:+59935954 Msa0081400:CDS
GGAGACGGAGAATGGGGTTA+TGG 0.461330 1_2:-59931431 None:intergenic
TATGTGTCTGGTGTTGCCTT+GGG 0.462152 1_2:+59936699 Msa0081400:CDS
GTGTGGAGGCTCGAACAAAA+TGG 0.463440 1_2:+59934072 Msa0081400:CDS
GGAGCAACGGAGACGGAGAA+TGG 0.472053 1_2:-59931439 None:intergenic
AAGGAACAGCCCCTCAAATC+CGG 0.472268 1_2:-59936667 None:intergenic
GTTCTACTCTTGAATTACAT+TGG 0.473931 1_2:+59935950 Msa0081400:CDS
TTCTCCACCTTCACCCGCCA+TGG 0.474334 1_2:+59931302 Msa0081400:exon
AGAAAACACACTGGAGGAGG+AGG 0.474459 1_2:-59932663 None:intergenic
AACACAAATCTAGGTGCATC+AGG 0.475052 1_2:-59932528 None:intergenic
GAGCAACGGAGACGGAGAAT+GGG 0.476836 1_2:-59931438 None:intergenic
TGAATTGGAGGAGGGGAAAG+GGG 0.477159 1_2:-59931379 None:intergenic
TGGTGCTCGGTTAGGGAAAA+GGG 0.478452 1_2:-59935918 None:intergenic
TTTGACTTAATGAGTATTGG+TGG 0.479201 1_2:+59932603 Msa0081400:CDS
GAAAGTGCATCTGCAGCAGC+AGG 0.479760 1_2:-59935579 None:intergenic
GGGAAATTGAGGCCGGTGCC+GGG 0.482439 1_2:+59932558 Msa0081400:CDS
AGATCAGAATGCTTGATAGA+TGG 0.483446 1_2:+59935660 Msa0081400:CDS
CGGGTGAAGGTGGAGAAAGA+AGG 0.486279 1_2:-59931296 None:intergenic
CGCCTCGGTAACAACAACAT+TGG 0.487396 1_2:-59931613 None:intergenic
GCCTTGGGAAGGTGTGTTGA+GGG 0.489434 1_2:+59936714 Msa0081400:CDS
CCTTATAAATCCAAATGCTC+AGG 0.489745 1_2:+59936542 Msa0081400:CDS
GCGTCGAAATCTTGGGGCCG+AGG 0.491211 1_2:+59932842 Msa0081400:CDS
AGCCAAGGAGTGCAAACATT+AGG 0.492529 1_2:+59935717 Msa0081400:CDS
GACTGTGTGGTTGTTGGTGG+TGG 0.492721 1_2:+59931534 Msa0081400:CDS
TTCCCTAACCGAGCACCACC+TGG 0.500403 1_2:+59935923 Msa0081400:CDS
CTTGATAGATGGTGAGTTGA+AGG 0.501381 1_2:+59935671 Msa0081400:CDS
CAGACATTGGACAACATATC+CGG 0.501565 1_2:+59931198 Msa0081400:five_prime_UTR
ATTTGAGGGGCTGTTCCTTG+GGG 0.502668 1_2:+59936671 Msa0081400:CDS
AAGCCAAAGGGTCAAACTGT+TGG 0.506404 1_2:+59934257 Msa0081400:CDS
GTGACAGGGTCATGAGGAAT+CGG 0.511762 1_2:+59932806 Msa0081400:intron
TCCGTCGACTGTGTGGTTGT+TGG 0.512497 1_2:+59931528 Msa0081400:CDS
ATTATTACCGTGGAGAGAGA+TGG 0.512962 1_2:+59931657 Msa0081400:CDS
TGCCTTGGGAAGGTGTGTTG+AGG 0.513044 1_2:+59936713 Msa0081400:CDS
TGGAGCCTTCAAAGCAATAC+AGG 0.517480 1_2:+59934110 Msa0081400:CDS
CCTAGATTTGTGTTGTGGAA+TGG 0.519996 1_2:+59932537 Msa0081400:CDS
TTTGAATTTGAATTGGAGGA+GGG 0.522101 1_2:-59931387 None:intergenic
AGGGCGGAGAAGGGTTTGAG+AGG 0.522166 1_2:-59931346 None:intergenic
TGAAGGTGGAGAAAGAAGGA+GGG 0.523848 1_2:-59931292 None:intergenic
ATACTCATTAAGTCAAAGAA+AGG 0.523934 1_2:-59932597 None:intergenic
ACAGACAGTGGTTGCAGCAA+TGG 0.525178 1_2:-59934576 None:intergenic
GTTGTTGGTGGTGGCATCAG+TGG 0.527241 1_2:+59931543 Msa0081400:CDS
CAGTGGACTATGTATTGCTC+AGG 0.529861 1_2:+59931560 Msa0081400:CDS
CTACTCTTGAATTACATTGG+AGG 0.531064 1_2:+59935953 Msa0081400:CDS
TTATTACCGTGGAGAGAGAT+GGG 0.537500 1_2:+59931658 Msa0081400:CDS
CCGCAATGGAGCAACGGAGA+CGG 0.540345 1_2:-59931446 None:intergenic
CAAAGAAACAACTCCTTCTG+GGG 0.540704 1_2:-59934508 None:intergenic
AGAAATTGCGTTTGGCAACA+TGG 0.544410 1_2:-59934300 None:intergenic
TGTTGTGGAATGGGAAATTG+AGG 0.544788 1_2:+59932547 Msa0081400:CDS
AGTGTAACCATGGCGGGTGA+AGG 0.546079 1_2:-59931309 None:intergenic
TCATATACAGGTGTCTATGC+CGG 0.548115 1_2:+59934009 Msa0081400:intron
ATTGGTGGCAAGATCAGGGC+TGG 0.549710 1_2:+59932618 Msa0081400:CDS
ACTCTTGAATTACATTGGAG+GGG 0.550694 1_2:+59935955 Msa0081400:CDS
AAAAGAAAACACACTGGAGG+AGG 0.550713 1_2:-59932666 None:intergenic
GAACCCTTCCAGGTGGTGCT+CGG 0.551325 1_2:-59935931 None:intergenic
GTCGACTGTGTGGTTGTTGG+TGG 0.553915 1_2:+59931531 Msa0081400:CDS
TCAAAGAAAGGCAAATCAGT+TGG 0.554397 1_2:-59932585 None:intergenic
GATTTGGTCAATTGCATCCA+CGG 0.558189 1_2:+59935694 Msa0081400:CDS
GGAGAAGGGTTTGAGAGGGT+GGG 0.559498 1_2:-59931341 None:intergenic
TGTCTGGTGTTGCCTTGGGA+AGG 0.559605 1_2:+59936703 Msa0081400:CDS
AAGGTGAGTGTAACCATGGC+GGG 0.561866 1_2:-59931315 None:intergenic
GAGTATTGGTGGCAAGATCA+GGG 0.567150 1_2:+59932614 Msa0081400:CDS
TTTGAGGGGCTGTTCCTTGG+GGG 0.567319 1_2:+59936672 Msa0081400:CDS
TTGAATTTGAATTGGAGGAG+GGG 0.567664 1_2:-59931386 None:intergenic
TGCGGTGGATTCCTCCGCAA+TGG 0.568908 1_2:-59931460 None:intergenic
TAGGCGTCTGCCAAAGCCAA+AGG 0.571021 1_2:+59934244 Msa0081400:intron
TTGCTAAATGCATGAACAAG+TGG 0.571388 1_2:-59936883 None:intergenic
AGGTCAAAATCTACAAAATG+GGG 0.571412 1_2:-59936927 None:intergenic
GAGGCGAAAGATCGAGTTGG+TGG 0.572541 1_2:+59931630 Msa0081400:CDS
TGGCAAGCAAACACAGACAT+TGG 0.573803 1_2:+59931185 Msa0081400:five_prime_UTR
GTAACCATGGCGGGTGAAGG+TGG 0.577809 1_2:-59931306 None:intergenic
ATGCACCTAGATTTGTGTTG+TGG 0.582787 1_2:+59932532 Msa0081400:CDS
TAACCGAGCACCACCTGGAA+GGG 0.584581 1_2:+59935928 Msa0081400:CDS
CAATTGCATCCACGGAGCCA+AGG 0.584598 1_2:+59935702 Msa0081400:CDS
AACCACACAGTCGACGGATG+AGG 0.587789 1_2:-59931523 None:intergenic
AGGCGTCTGCCAAAGCCAAA+GGG 0.588421 1_2:+59934245 Msa0081400:intron
AATGGTGGTAGCATTATTGG+TGG 0.588539 1_2:+59934090 Msa0081400:CDS
CTAACCGAGCACCACCTGGA+AGG 0.589476 1_2:+59935927 Msa0081400:CDS
AACTGTTGGATCATTCCAGA+AGG 0.591149 1_2:+59934271 Msa0081400:CDS
TGTTGGCAGGTTAGGTAACA+AGG 0.592433 1_2:+59934416 Msa0081400:intron
GTCGACGGATGAGGACTCTC+CGG 0.593499 1_2:-59931514 None:intergenic
GCAGCAATGGACTAGCAACA+TGG 0.594611 1_2:-59934563 None:intergenic
ACTAGCAACATGGGAAGGAA+TGG 0.596346 1_2:-59934553 None:intergenic
CCGTCTCCGTTGCTCCATTG+CGG 0.597409 1_2:+59931446 Msa0081400:CDS
ACCAACAACCACACAGTCGA+CGG 0.599076 1_2:-59931529 None:intergenic
TCCCTCAACACACCTTCCCA+AGG 0.601614 1_2:-59936715 None:intergenic
ACTTGTTCATGCATTTAGCA+AGG 0.603471 1_2:+59936885 Msa0081400:three_prime_UTR
CTTTCTACAAAGCATGCTGA+TGG 0.605299 1_2:+59931585 Msa0081400:CDS
TTTGTTTAATTGCAGACGGA+GGG 0.606182 1_2:+59936480 Msa0081400:intron
GGGCGGAGAAGGGTTTGAGA+GGG 0.606191 1_2:-59931345 None:intergenic
GTTTGCACTCCTTGGCTCCG+TGG 0.607612 1_2:-59935711 None:intergenic
TACTTCAGCTGCTATCTCGT+AGG 0.608699 1_2:-59936739 None:intergenic
ACCAACTCGATCTTTCGCCT+CGG 0.609410 1_2:-59931628 None:intergenic
GAAAACACACTGGAGGAGGA+GGG 0.609629 1_2:-59932662 None:intergenic
ATGTAAGAGCCAATTGCAAG+TGG 0.609856 1_2:+59931165 None:intergenic
CCCCAATGTTGTTGTTACCG+AGG 0.610569 1_2:+59931611 Msa0081400:CDS
ATGGTGAGCATAGGATCAGA+AGG 0.615324 1_2:-59931714 None:intergenic
CATACCACCATGGTGAGCAT+AGG 0.615890 1_2:-59931723 None:intergenic
ATGGAAACTGCCGCAACTGG+AGG 0.618307 1_2:-59935615 None:intergenic
TCTCCGTTGCTCCATTGCGG+AGG 0.619176 1_2:+59931449 Msa0081400:CDS
TGATCCTATGCTCACCATGG+TGG 0.621350 1_2:+59931719 Msa0081400:CDS
ATTCCTCCGCAATGGAGCAA+CGG 0.621982 1_2:-59931452 None:intergenic
TGCCAAACGCAATTTCTGCT+AGG 0.622423 1_2:+59934306 Msa0081400:CDS
GTCCTCATCCGTCGACTGTG+TGG 0.625269 1_2:+59931521 Msa0081400:CDS
TTATTGTGTTAGGTTCTGGG+TGG 0.627991 1_2:+59936836 Msa0081400:three_prime_UTR
AAGAACTGTGGAATAGCTTG+AGG 0.628529 1_2:-59936594 None:intergenic
TTGATAGATGGTGAGTTGAA+GGG 0.630684 1_2:+59935672 Msa0081400:CDS
TGCAGAGAGTGTACAAGTAG+CGG 0.631367 1_2:+59936775 Msa0081400:CDS
ACGAAGGTGACAGGGTCATG+AGG 0.634684 1_2:+59932800 Msa0081400:intron
GTGGAATGGGAAATTGAGGC+CGG 0.635091 1_2:+59932551 Msa0081400:CDS
AAGAAACCCATCTCTCTCCA+CGG 0.637483 1_2:-59931664 None:intergenic
AGGCGAAAGATCGAGTTGGT+GGG 0.637489 1_2:+59931631 Msa0081400:CDS
CAGCAATGGACTAGCAACAT+GGG 0.637669 1_2:-59934562 None:intergenic
TGGTGGGAATATTATTACCG+TGG 0.637750 1_2:+59931647 Msa0081400:CDS
AATGGACTAGCAACATGGGA+AGG 0.638945 1_2:-59934558 None:intergenic
GTTCGTGCGTCGAAATCTTG+GGG 0.639972 1_2:+59932836 Msa0081400:CDS
GTCAAAATCTACAAAATGGG+GGG 0.647394 1_2:-59936925 None:intergenic
GGTCAAAATCTACAAAATGG+GGG 0.651163 1_2:-59936926 None:intergenic
AGATGTCCAACTAAGAACTG+TGG 0.655954 1_2:-59936606 None:intergenic
TTCTGATCCTATGCTCACCA+TGG 0.662399 1_2:+59931716 Msa0081400:CDS
GAAGAAGGTGAGTGTAACCA+TGG 0.663337 1_2:-59931319 None:intergenic
AGCAACGGAGACGGAGAATG+GGG 0.663402 1_2:-59931437 None:intergenic
ACCGAGGCGAAAGATCGAGT+TGG 0.669092 1_2:+59931627 Msa0081400:CDS
TTGACGTATGAAACCCCAGA+AGG 0.670583 1_2:+59934495 Msa0081400:CDS
ACTGTTGGATCATTCCAGAA+GGG 0.679938 1_2:+59934272 Msa0081400:CDS
TGGAGGCTCGAACAAAATGG+TGG 0.692440 1_2:+59934075 Msa0081400:CDS
GAAGGTGAGTGTAACCATGG+CGG 0.701877 1_2:-59931316 None:intergenic
TTGATTACAACATACCACCA+TGG 0.703359 1_2:-59931733 None:intergenic
CCTCGGTAACAACAACATTG+GGG 0.719137 1_2:-59931611 None:intergenic
AAGAGTAGAACCCTTCCAGG+TGG 0.742286 1_2:-59935938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTAAATTAAGT+TGG - chr1_2:59933519-59933538 None:intergenic 10.0%
!!! TTGATTAATATTTAAAATAG+AGG + chr1_2:59933726-59933745 Msa0081400:intron 10.0%
!!! TGATTAATATTTAAAATAGA+GGG + chr1_2:59933727-59933746 Msa0081400:intron 10.0%
!!! AATGAATTTTGAATTTGAAT+TGG - chr1_2:59931397-59931416 None:intergenic 15.0%
!! TTGAAATTGAAATTGAAATT+TGG + chr1_2:59931805-59931824 Msa0081400:intron 15.0%
!!! GTCATTTTTTTTAGTAAATT+TGG + chr1_2:59931880-59931899 Msa0081400:intron 15.0%
!!! TTATGTCTTTTCATATTTAT+CGG - chr1_2:59932053-59932072 None:intergenic 15.0%
!! AGAAAATTAAACAAAAGAAA+GGG - chr1_2:59932695-59932714 None:intergenic 15.0%
!! AAGAAAATTAAACAAAAGAA+AGG - chr1_2:59932696-59932715 None:intergenic 15.0%
!! ACTATGTTAAATGAAATATA+TGG + chr1_2:59932716-59932735 Msa0081400:intron 15.0%
!!! TTTTATATAATATAGGAGTT+TGG + chr1_2:59932998-59933017 Msa0081400:intron 15.0%
!!! AAATTAAGTTGGATATTTTT+TGG - chr1_2:59933508-59933527 None:intergenic 15.0%
!! ATGAAGTAATATTAAAGAAA+AGG - chr1_2:59933931-59933950 None:intergenic 15.0%
!!! AGTTTTATTAGTTGAATATT+TGG + chr1_2:59934644-59934663 Msa0081400:intron 15.0%
!! AATTATTTCAAAACATTGTA+TGG - chr1_2:59936966-59936985 None:intergenic 15.0%
!! TAAACGTATCAAAATAGAAA+AGG + chr1_2:59931848-59931867 Msa0081400:intron 20.0%
!!! ATAATTGATTAATTAGCTTC+TGG + chr1_2:59931940-59931959 Msa0081400:intron 20.0%
!!! TAGAGATGTTTTTGTAATTT+TGG + chr1_2:59932394-59932413 Msa0081400:intron 20.0%
!!! TTTTGTAATTTTGGAACATT+TGG + chr1_2:59932403-59932422 Msa0081400:intron 20.0%
!! TTAAATGAAATATATGGAAC+TGG + chr1_2:59932722-59932741 Msa0081400:intron 20.0%
!! ATATGATATAATATTGACGA+AGG + chr1_2:59932784-59932803 Msa0081400:intron 20.0%
!!! CGGAGATTTTTATATAATAT+AGG + chr1_2:59932991-59933010 Msa0081400:intron 20.0%
!! AAGAAACTTCTTATTCTATT+AGG - chr1_2:59933085-59933104 None:intergenic 20.0%
!!! ATGGATTTGAAATATTCTTT+GGG - chr1_2:59933114-59933133 None:intergenic 20.0%
!!! AAATTTCAGTTTTTAAGAGA+CGG - chr1_2:59933145-59933164 None:intergenic 20.0%
!!! TGAGTTTTAAACAAATGAAA+AGG - chr1_2:59933434-59933453 None:intergenic 20.0%
!! TCATTTCATATCAAAATATC+CGG - chr1_2:59933660-59933679 None:intergenic 20.0%
!! TCATTTATAAGAGGAAAAAT+TGG - chr1_2:59933865-59933884 None:intergenic 20.0%
!! TAATGCGAATATTAAAGAAA+AGG - chr1_2:59933957-59933976 None:intergenic 20.0%
!! TTTCTTTAATATTCGCATTA+AGG + chr1_2:59933957-59933976 Msa0081400:intron 20.0%
!!! TCAGAGTAAATGTATTTTTA+CGG - chr1_2:59934168-59934187 None:intergenic 20.0%
!!! GATTTTTCTATAAAAATCAG+AGG - chr1_2:59934865-59934884 None:intergenic 20.0%
!! TGTGATTGATATAATAATAC+TGG - chr1_2:59935112-59935131 None:intergenic 20.0%
!! TATTGCCAATTAAAAAAACA+AGG - chr1_2:59935138-59935157 None:intergenic 20.0%
!!! CATAACTCTAAAATATTACA+AGG - chr1_2:59935230-59935249 None:intergenic 20.0%
!! ACAAATAAGTTATATCTGAA+TGG + chr1_2:59935480-59935499 Msa0081400:intron 20.0%
!! TTGAATTTATTATGCAAAAG+TGG + chr1_2:59935747-59935766 Msa0081400:intron 20.0%
!! TACAGTTCATAATTTATACT+TGG - chr1_2:59935821-59935840 None:intergenic 20.0%
!! AAGTATGTAAAATATGTAAC+AGG - chr1_2:59936382-59936401 None:intergenic 20.0%
!! AAAGTTTCTCTTAAAAATAC+CGG + chr1_2:59936648-59936667 Msa0081400:CDS 20.0%
!! TTTATCAGATTTATTGTGTT+AGG + chr1_2:59936826-59936845 Msa0081400:three_prime_UTR 20.0%
!! GAATTTTGAATTTGAATTGG+AGG - chr1_2:59931394-59931413 None:intergenic 25.0%
!! TTCATATTTATCGGTTAGTT+TGG - chr1_2:59932044-59932063 None:intergenic 25.0%
! CTAGAATCTTGTGAAAAAAT+TGG + chr1_2:59932164-59932183 Msa0081400:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG + chr1_2:59932277-59932296 Msa0081400:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG + chr1_2:59932277-59932296 Msa0081400:intron 25.0%
! ATACTCATTAAGTCAAAGAA+AGG - chr1_2:59932600-59932619 None:intergenic 25.0%
!! TTCTTTGACTTAATGAGTAT+TGG + chr1_2:59932600-59932619 Msa0081400:CDS 25.0%
!! TGGATTTGAAATATTCTTTG+GGG - chr1_2:59933113-59933132 None:intergenic 25.0%
!! GATGGATTTGAAATATTCTT+TGG - chr1_2:59933115-59933134 None:intergenic 25.0%
!!! AATTTCAGTTTTTAAGAGAC+GGG - chr1_2:59933144-59933163 None:intergenic 25.0%
! ATTTGCATAGATTAAGACTT+TGG + chr1_2:59933168-59933187 Msa0081400:intron 25.0%
! TTTGCATAGATTAAGACTTT+GGG + chr1_2:59933169-59933188 Msa0081400:intron 25.0%
! ATGGTGCATTTATCAAATTA+AGG - chr1_2:59933830-59933849 None:intergenic 25.0%
! AAATTGGAAGAAAGGAAAAA+TGG - chr1_2:59933849-59933868 None:intergenic 25.0%
!! GCTTTCATACTTAATTTTGA+AGG - chr1_2:59934039-59934058 None:intergenic 25.0%
!!! AAATGTATTTTTACGGATCA+CGG - chr1_2:59934161-59934180 None:intergenic 25.0%
!! ATACATTTACTCTGAGTTTT+TGG + chr1_2:59934173-59934192 Msa0081400:intron 25.0%
!!! GCTTTTAAGTATTAGTAAAC+TGG + chr1_2:59934455-59934474 Msa0081400:CDS 25.0%
!!! CTGTAAGTTTTTCTAAAAAG+TGG + chr1_2:59934595-59934614 Msa0081400:intron 25.0%
! AAATCAGAGGATGATAAATA+GGG - chr1_2:59934852-59934871 None:intergenic 25.0%
! AAAATCAGAGGATGATAAAT+AGG - chr1_2:59934853-59934872 None:intergenic 25.0%
!! TTTCTTTTCTGTTCAACATA+TGG + chr1_2:59934886-59934905 Msa0081400:intron 25.0%
! TTTCCAAAAACTTACTACTA+CGG + chr1_2:59934944-59934963 Msa0081400:intron 25.0%
!!! TACTACGGATAATTTTGTTT+GGG + chr1_2:59934959-59934978 Msa0081400:intron 25.0%
! CAGAATCAAAGACAAAAATT+TGG + chr1_2:59935029-59935048 Msa0081400:intron 25.0%
! CTTATGGCTGTTAAAATATT+TGG + chr1_2:59935065-59935084 Msa0081400:intron 25.0%
!!! CAGTTCCTTGTTTTTTTAAT+TGG + chr1_2:59935130-59935149 Msa0081400:intron 25.0%
! TTAACAATAATTTCACAGTC+AGG - chr1_2:59935190-59935209 None:intergenic 25.0%
! AAGTAAACAACCGATATTTA+AGG - chr1_2:59935373-59935392 None:intergenic 25.0%
! GTAATTATTAAAAAATCGCG+TGG - chr1_2:59935795-59935814 None:intergenic 25.0%
! GTTCATAATTTATACTTGGA+TGG - chr1_2:59935817-59935836 None:intergenic 25.0%
!! TAAAATGTGTTGTGTAGTTT+TGG + chr1_2:59935839-59935858 Msa0081400:intron 25.0%
!! TGGTAATGATAACATATTTG+TGG + chr1_2:59935868-59935887 Msa0081400:intron 25.0%
! GGTAATGATAACATATTTGT+GGG + chr1_2:59935869-59935888 Msa0081400:intron 25.0%
! AAGTTTAAACACTTGAAACA+AGG - chr1_2:59936187-59936206 None:intergenic 25.0%
! TATATGATCAAATAACAGAG+AGG - chr1_2:59936359-59936378 None:intergenic 25.0%
!! TAAGGATTTTTCTCAAATCT+CGG - chr1_2:59936527-59936546 None:intergenic 25.0%
! ACTTTGTCATTACAATGAAA+TGG - chr1_2:59936807-59936826 None:intergenic 25.0%
! TGTATGGATTTACATATATC+AGG - chr1_2:59936950-59936969 None:intergenic 25.0%
! TCAAATATGCATATTCTGTT+TGG + chr1_2:59937015-59937034 Msa0081400:three_prime_UTR 25.0%
TACTGTTACTGAAACTTAAC+CGG - chr1_2:59931220-59931239 None:intergenic 30.0%
TTTGAATTTGAATTGGAGGA+GGG - chr1_2:59931390-59931409 None:intergenic 30.0%
! TTTTGAATTTGAATTGGAGG+AGG - chr1_2:59931391-59931410 None:intergenic 30.0%
TCAGAAGGTTGAAAACTATT+AGG - chr1_2:59931702-59931721 None:intergenic 30.0%
!! TTACGAATGAAGCTTTAAAG+AGG - chr1_2:59931767-59931786 None:intergenic 30.0%
TTAAAGCTTCATTCGTAATG+TGG + chr1_2:59931769-59931788 Msa0081400:intron 30.0%
! ATTGATTAATTAGCTTCTGG+CGG + chr1_2:59931943-59931962 Msa0081400:intron 30.0%
GTGTTTGAATTTGTAGTGTT+TGG + chr1_2:59932001-59932020 Msa0081400:intron 30.0%
GAAAAAATTGGTTACCAAAC+AGG + chr1_2:59932176-59932195 Msa0081400:intron 30.0%
TTATAGCTTATAAGCTCGTA+TGG - chr1_2:59932212-59932231 None:intergenic 30.0%
!! AGACACTTAGTTGTTTTGTT+TGG + chr1_2:59932270-59932289 Msa0081400:intron 30.0%
!! AGATGCTTAGTTGTTTTGTT+TGG + chr1_2:59932303-59932322 Msa0081400:intron 30.0%
GTTGTTACTATTAATCAGCT+TGG + chr1_2:59932337-59932356 Msa0081400:intron 30.0%
!!! ACATGTTGGTAATATGGTTT+TGG + chr1_2:59932449-59932468 Msa0081400:intron 30.0%
!!! TTTGGTTGTTTTATTTGTGC+AGG + chr1_2:59932467-59932486 Msa0081400:intron 30.0%
!! TTTGACTTAATGAGTATTGG+TGG + chr1_2:59932603-59932622 Msa0081400:CDS 30.0%
AAACAGGACAATGAAAAAGT+TGG - chr1_2:59932911-59932930 None:intergenic 30.0%
AGAACATAAAAGTAGGTAGT+TGG - chr1_2:59932969-59932988 None:intergenic 30.0%
!! AACTACCTACTTTTATGTTC+TGG + chr1_2:59932968-59932987 Msa0081400:intron 30.0%
ACCCTATAATATTCAGTTCT+TGG + chr1_2:59933021-59933040 Msa0081400:intron 30.0%
GCCAAGAACTGAATATTATA+GGG - chr1_2:59933025-59933044 None:intergenic 30.0%
! GCAATATTTCTATGTTCATG+CGG + chr1_2:59933219-59933238 Msa0081400:intron 30.0%
!! ATAAGTGGCTACACTTTTTA+GGG + chr1_2:59933252-59933271 Msa0081400:intron 30.0%
! TCTGCATATTGTGTTAGTTT+AGG + chr1_2:59933289-59933308 Msa0081400:intron 30.0%
! CTGCATATTGTGTTAGTTTA+GGG + chr1_2:59933290-59933309 Msa0081400:intron 30.0%
! TTAGGGCGTAATTACAATTT+TGG + chr1_2:59933307-59933326 Msa0081400:intron 30.0%
AGGATTTCAAGAGAAGATTT+GGG - chr1_2:59933543-59933562 None:intergenic 30.0%
TAGGATTTCAAGAGAAGATT+TGG - chr1_2:59933544-59933563 None:intergenic 30.0%
! ATTTTGTAGAATGCGAGATT+AGG - chr1_2:59933563-59933582 None:intergenic 30.0%
GATATGAAATGAGACTTTAG+AGG + chr1_2:59933668-59933687 Msa0081400:intron 30.0%
TCACACATAACTCAAACTAT+AGG + chr1_2:59933786-59933805 Msa0081400:intron 30.0%
CACACATAACTCAAACTATA+GGG + chr1_2:59933787-59933806 Msa0081400:intron 30.0%
AAGAGGAAAAATTGGAAGAA+AGG - chr1_2:59933857-59933876 None:intergenic 30.0%
TGCTTGTCATCATTTATAAG+AGG - chr1_2:59933874-59933893 None:intergenic 30.0%
!! AGCTGATTTTTGTCATATAC+AGG + chr1_2:59933997-59934016 Msa0081400:intron 30.0%
! TTAAGTATGAAAGCAGCTTT+TGG + chr1_2:59934045-59934064 Msa0081400:CDS 30.0%
! TAAGTATGAAAGCAGCTTTT+GGG + chr1_2:59934046-59934065 Msa0081400:CDS 30.0%
!! AATGTATTTTTACGGATCAC+GGG - chr1_2:59934160-59934179 None:intergenic 30.0%
! GATATTTTGCCATAGTTGAT+GGG + chr1_2:59934195-59934214 Msa0081400:intron 30.0%
ACTGATTGCAACAATTATGT+AGG + chr1_2:59934225-59934244 Msa0081400:intron 30.0%
AGTATTAGTAAACTGGATAG+TGG + chr1_2:59934462-59934481 Msa0081400:CDS 30.0%
TTAGAAAAACTTACAGACAG+TGG - chr1_2:59934591-59934610 None:intergenic 30.0%
ATTAGTTGAATATTTGGACC+TGG + chr1_2:59934650-59934669 Msa0081400:intron 30.0%
TTAGTTGAATATTTGGACCT+GGG + chr1_2:59934651-59934670 Msa0081400:intron 30.0%
! TTTTGTAAGTATACACGTCT+TGG + chr1_2:59934698-59934717 Msa0081400:intron 30.0%
AAACACTCAAACAATCAAAG+AGG - chr1_2:59934769-59934788 None:intergenic 30.0%
AATAGGGAAATGTGAAATCA+TGG - chr1_2:59934836-59934855 None:intergenic 30.0%
! TATCCGTAGTAGTAAGTTTT+TGG - chr1_2:59934950-59934969 None:intergenic 30.0%
! CTACTACGGATAATTTTGTT+TGG + chr1_2:59934958-59934977 Msa0081400:intron 30.0%
! TTGATTCTGAAAACTGTCTA+TGG - chr1_2:59935018-59935037 None:intergenic 30.0%
GAACTAGGTTCCTTAAATAT+CGG + chr1_2:59935360-59935379 Msa0081400:intron 30.0%
AAATGCCTCAACTTATATGA+TGG - chr1_2:59935528-59935547 None:intergenic 30.0%
AGAGATATTGAAATGTAGTC+AGG - chr1_2:59935554-59935573 None:intergenic 30.0%
TATCAAGCATTCTGATCTAA+TGG - chr1_2:59935658-59935677 None:intergenic 30.0%
GTTCTACTCTTGAATTACAT+TGG + chr1_2:59935950-59935969 Msa0081400:CDS 30.0%
TACTCTTGAATTACATTGGA+GGG + chr1_2:59935954-59935973 Msa0081400:CDS 30.0%
CTTTGATAAAATCCCAGAAT+TGG - chr1_2:59935984-59936003 None:intergenic 30.0%
!!! CAATTCTGGGATTTTATCAA+AGG + chr1_2:59935982-59936001 Msa0081400:CDS 30.0%
!! GAAGAGAATCTTTGAAATCT+TGG + chr1_2:59936243-59936262 Msa0081400:intron 30.0%
!! ATCTTTGAAATCTTGGTCAA+AGG + chr1_2:59936250-59936269 Msa0081400:intron 30.0%
GCAATTAAACAAAAGGCTTT+AGG - chr1_2:59936473-59936492 None:intergenic 30.0%
TCTTAAAAATACCGGATTTG+AGG + chr1_2:59936656-59936675 Msa0081400:CDS 30.0%
CTTAAAAATACCGGATTTGA+GGG + chr1_2:59936657-59936676 Msa0081400:CDS 30.0%
TTAAAAATACCGGATTTGAG+GGG + chr1_2:59936658-59936677 Msa0081400:CDS 30.0%
AGATTTATTGTGTTAGGTTC+TGG + chr1_2:59936832-59936851 Msa0081400:three_prime_UTR 30.0%
GATTTATTGTGTTAGGTTCT+GGG + chr1_2:59936833-59936852 Msa0081400:three_prime_UTR 30.0%
AGGTCAAAATCTACAAAATG+GGG - chr1_2:59936930-59936949 None:intergenic 30.0%
CAGGTCAAAATCTACAAAAT+GGG - chr1_2:59936931-59936950 None:intergenic 30.0%
TCAGGTCAAAATCTACAAAA+TGG - chr1_2:59936932-59936951 None:intergenic 30.0%
TTGAATTTGAATTGGAGGAG+GGG - chr1_2:59931389-59931408 None:intergenic 35.0%
!!! GATTTTGAGGTGGTTTTAGT+CGG - chr1_2:59931489-59931508 None:intergenic 35.0%
ACCACCTCAAAATCAAATTC+CGG + chr1_2:59931495-59931514 Msa0081400:CDS 35.0%
TTGATTACAACATACCACCA+TGG - chr1_2:59931736-59931755 None:intergenic 35.0%
TTTAGGCTCTGTCAAAATAG+CGG + chr1_2:59931917-59931936 Msa0081400:intron 35.0%
!! AAGCTTTAAGCTACTTGAAG+TGG + chr1_2:59932107-59932126 Msa0081400:intron 35.0%
GTTACCAAACAGGTCTAATT+TGG + chr1_2:59932186-59932205 Msa0081400:intron 35.0%
! CATTTTGAGCTTATAGCAGA+TGG - chr1_2:59932236-59932255 None:intergenic 35.0%
!! TTTGAAGGACGATCTTGTTT+TGG + chr1_2:59932500-59932519 Msa0081400:intron 35.0%
!!! TTGAAGGACGATCTTGTTTT+GGG + chr1_2:59932501-59932520 Msa0081400:intron 35.0%
CTAGATTTGTGTTGTGGAAT+GGG + chr1_2:59932538-59932557 Msa0081400:CDS 35.0%
TCAAAGAAAGGCAAATCAGT+TGG - chr1_2:59932588-59932607 None:intergenic 35.0%
ATCAAAAGAAAACACACTGG+AGG - chr1_2:59932672-59932691 None:intergenic 35.0%
ATGAAATATATGGAACTGGC+AGG + chr1_2:59932726-59932745 Msa0081400:intron 35.0%
ATAATATTGACGAAGGTGAC+AGG + chr1_2:59932791-59932810 Msa0081400:intron 35.0%
TAATATTGACGAAGGTGACA+GGG + chr1_2:59932792-59932811 Msa0081400:intron 35.0%
AACAACTGAGAGTGAAAAAC+AGG - chr1_2:59932927-59932946 None:intergenic 35.0%
!! TACCTACTTTTATGTTCTGG+CGG + chr1_2:59932971-59932990 Msa0081400:intron 35.0%
CGCCAAGAACTGAATATTAT+AGG - chr1_2:59933026-59933045 None:intergenic 35.0%
CCAAAAAGCAGTTATCATGA+TGG - chr1_2:59933062-59933081 None:intergenic 35.0%
!! CCATCATGATAACTGCTTTT+TGG + chr1_2:59933059-59933078 Msa0081400:intron 35.0%
TGCGGAATTTGTAACATAAG+TGG + chr1_2:59933237-59933256 Msa0081400:intron 35.0%
!! CATAAGTGGCTACACTTTTT+AGG + chr1_2:59933251-59933270 Msa0081400:intron 35.0%
!!! GTCTCTGTAGTTTTTTTCGA+GGG - chr1_2:59933761-59933780 None:intergenic 35.0%
! GTTTGAGTTATGTGTGACTT+TGG - chr1_2:59933783-59933802 None:intergenic 35.0%
ATGACAAAAATCAGCTAAGC+AGG - chr1_2:59933993-59934012 None:intergenic 35.0%
!! ACTTAATTTTGAAGGATCGC+CGG - chr1_2:59934031-59934050 None:intergenic 35.0%
CAAAATGGTGGTAGCATTAT+TGG + chr1_2:59934087-59934106 Msa0081400:CDS 35.0%
!! ATGTATTTTTACGGATCACG+GGG - chr1_2:59934159-59934178 None:intergenic 35.0%
! GGATATTTTGCCATAGTTGA+TGG + chr1_2:59934194-59934213 Msa0081400:intron 35.0%
GTAAACTAACCCATCAACTA+TGG - chr1_2:59934207-59934226 None:intergenic 35.0%
TGGTGAAACAACTAGAACAA+TGG - chr1_2:59934351-59934370 None:intergenic 35.0%
GTAACAAGGTGAAGTTATCT+TGG + chr1_2:59934430-59934449 Msa0081400:CDS 35.0%
TTCAATAAGACAAATGACCC+AGG - chr1_2:59934671-59934690 None:intergenic 35.0%
AAAACTAAAGACCTGCAGTA+AGG - chr1_2:59934726-59934745 None:intergenic 35.0%
!!! GGTTTTGTTTAGTGATTAGC+AGG + chr1_2:59934980-59934999 Msa0081400:intron 35.0%
TTTAGTGATTAGCAGGTTCT+AGG + chr1_2:59934987-59935006 Msa0081400:intron 35.0%
TTAGTGATTAGCAGGTTCTA+GGG + chr1_2:59934988-59935007 Msa0081400:intron 35.0%
! ACTGGTTTCTTCAGACTTAT+AGG - chr1_2:59935094-59935113 None:intergenic 35.0%
!!! ATTACGGGTTTTTTGCATAC+AGG - chr1_2:59935297-59935316 None:intergenic 35.0%
CAAAAAACCCGTAATGTTTC+CGG + chr1_2:59935302-59935321 Msa0081400:intron 35.0%
CTATATAGCTTCTGCTATGT+AGG - chr1_2:59935341-59935360 None:intergenic 35.0%
AGCAGAAGCTATATAGAACT+AGG + chr1_2:59935345-59935364 Msa0081400:intron 35.0%
ATATCTGAATGGCCAATTTC+TGG + chr1_2:59935491-59935510 Msa0081400:intron 35.0%
!! GTTTTATTATCCTCCAGTTG+CGG + chr1_2:59935605-59935624 Msa0081400:CDS 35.0%
! TCTAATGGCTTCTTTTGGAT+AGG - chr1_2:59935643-59935662 None:intergenic 35.0%
! TCTGATCTAATGGCTTCTTT+TGG - chr1_2:59935648-59935667 None:intergenic 35.0%
AGATCAGAATGCTTGATAGA+TGG + chr1_2:59935660-59935679 Msa0081400:CDS 35.0%
! TTGATAGATGGTGAGTTGAA+GGG + chr1_2:59935672-59935691 Msa0081400:CDS 35.0%
!!! ATGTGTTGTGTAGTTTTGGA+AGG + chr1_2:59935843-59935862 Msa0081400:intron 35.0%
!!! TTGTGTAGTTTTGGAAGGTA+TGG + chr1_2:59935848-59935867 Msa0081400:intron 35.0%
AACATATTTGTGGGTTTGAC+AGG + chr1_2:59935878-59935897 Msa0081400:intron 35.0%
CTACTCTTGAATTACATTGG+AGG + chr1_2:59935953-59935972 Msa0081400:CDS 35.0%
ACTCTTGAATTACATTGGAG+GGG + chr1_2:59935955-59935974 Msa0081400:CDS 35.0%
!! TCTGGGATTTTATCAAAGGT+AGG + chr1_2:59935986-59936005 Msa0081400:intron 35.0%
TGCAATTGTTTGAGCTGTTA+TGG + chr1_2:59936042-59936061 Msa0081400:intron 35.0%
! AGCTGTTATGGTGTCAAATA+AGG + chr1_2:59936054-59936073 Msa0081400:intron 35.0%
AAATAAGGCGAAAGTGAAAG+AGG + chr1_2:59936069-59936088 Msa0081400:intron 35.0%
! TTTTCCTTCTTCGTTGTTGT+TGG + chr1_2:59936095-59936114 Msa0081400:intron 35.0%
! CTTCATCATGTCTTGATGAT+TGG + chr1_2:59936313-59936332 Msa0081400:intron 35.0%
!! GCCTTTTGTTTAATTGCAGA+CGG + chr1_2:59936476-59936495 Msa0081400:intron 35.0%
TCCGTCTGCAATTAAACAAA+AGG - chr1_2:59936480-59936499 None:intergenic 35.0%
!! TTTTGTTTAATTGCAGACGG+AGG + chr1_2:59936479-59936498 Msa0081400:intron 35.0%
TTTGTTTAATTGCAGACGGA+GGG + chr1_2:59936480-59936499 Msa0081400:intron 35.0%
CCTGAGCATTTGGATTTATA+AGG - chr1_2:59936545-59936564 None:intergenic 35.0%
CCTTATAAATCCAAATGCTC+AGG + chr1_2:59936542-59936561 Msa0081400:CDS 35.0%
TTGCTAAATGCATGAACAAG+TGG - chr1_2:59936886-59936905 None:intergenic 35.0%
ACTTGTTCATGCATTTAGCA+AGG + chr1_2:59936885-59936904 Msa0081400:three_prime_UTR 35.0%
GTCAAAATCTACAAAATGGG+GGG - chr1_2:59936928-59936947 None:intergenic 35.0%
GGTCAAAATCTACAAAATGG+GGG - chr1_2:59936929-59936948 None:intergenic 35.0%
CAGACATTGGACAACATATC+CGG + chr1_2:59931198-59931217 Msa0081400:five_prime_UTR 40.0%
! GGGGGTGTAGAAATGAATAA+CGG - chr1_2:59931275-59931294 None:intergenic 40.0%
!! TCCGGAATTTGATTTTGAGG+TGG - chr1_2:59931499-59931518 None:intergenic 40.0%
!! CTCTCCGGAATTTGATTTTG+AGG - chr1_2:59931502-59931521 None:intergenic 40.0%
CTTTCTACAAAGCATGCTGA+TGG + chr1_2:59931585-59931604 Msa0081400:CDS 40.0%
TGGTGGGAATATTATTACCG+TGG + chr1_2:59931647-59931666 Msa0081400:CDS 40.0%
ATTATTACCGTGGAGAGAGA+TGG + chr1_2:59931657-59931676 Msa0081400:CDS 40.0%
TTATTACCGTGGAGAGAGAT+GGG + chr1_2:59931658-59931677 Msa0081400:CDS 40.0%
TGGTCCTCGAATGTGTATTT+AGG + chr1_2:59931900-59931919 Msa0081400:intron 40.0%
AGAGCCTAAATACACATTCG+AGG - chr1_2:59931907-59931926 None:intergenic 40.0%
ACACCTAGTTTATCCGCTAT+CGG - chr1_2:59931985-59932004 None:intergenic 40.0%
ATGGCCAAATTAGACCTGTT+TGG - chr1_2:59932193-59932212 None:intergenic 40.0%
TATTACCAACATGTGTGAGG+CGG - chr1_2:59932443-59932462 None:intergenic 40.0%
CCATATTACCAACATGTGTG+AGG - chr1_2:59932446-59932465 None:intergenic 40.0%
!! CCTCACACATGTTGGTAATA+TGG + chr1_2:59932443-59932462 Msa0081400:intron 40.0%
!!! GGTTGTTTTATTTGTGCAGG+TGG + chr1_2:59932470-59932489 Msa0081400:intron 40.0%
AACACAAATCTAGGTGCATC+AGG - chr1_2:59932531-59932550 None:intergenic 40.0%
ATGCACCTAGATTTGTGTTG+TGG + chr1_2:59932532-59932551 Msa0081400:CDS 40.0%
CCATTCCACAACACAAATCT+AGG - chr1_2:59932540-59932559 None:intergenic 40.0%
CCTAGATTTGTGTTGTGGAA+TGG + chr1_2:59932537-59932556 Msa0081400:CDS 40.0%
TGTTGTGGAATGGGAAATTG+AGG + chr1_2:59932547-59932566 Msa0081400:CDS 40.0%
AAAAGAAAACACACTGGAGG+AGG - chr1_2:59932669-59932688 None:intergenic 40.0%
GGGATCAAAAGAAAACACAC+TGG - chr1_2:59932675-59932694 None:intergenic 40.0%
ACTGGCAGGATAAATAATGC+AGG + chr1_2:59932740-59932759 Msa0081400:intron 40.0%
TATCAGGCGTTCAAAAACCT+CGG - chr1_2:59932862-59932881 None:intergenic 40.0%
CTGAACAAAAAGGCTCTATC+AGG - chr1_2:59932878-59932897 None:intergenic 40.0%
! CTGATAGAGCCTTTTTGTTC+AGG + chr1_2:59932876-59932895 Msa0081400:CDS 40.0%
CAGGACAATGAAAAAGTTGG+TGG - chr1_2:59932908-59932927 None:intergenic 40.0%
AAAGTAGGTAGTTGGCTGAA+AGG - chr1_2:59932961-59932980 None:intergenic 40.0%
TCAGTTCTTGGCGAATGAAA+TGG + chr1_2:59933033-59933052 Msa0081400:intron 40.0%
!!! AGTTTTTAAGAGACGGGTTG+GGG - chr1_2:59933138-59933157 None:intergenic 40.0%
!! CAGTTTTTAAGAGACGGGTT+GGG - chr1_2:59933139-59933158 None:intergenic 40.0%
!! TCAGTTTTTAAGAGACGGGT+TGG - chr1_2:59933140-59933159 None:intergenic 40.0%
! GCTTGAGCTATGTGTGATTT+TGG + chr1_2:59933338-59933357 Msa0081400:intron 40.0%
! AACAAATGAAAAGGAGCGCA+AGG - chr1_2:59933425-59933444 None:intergenic 40.0%
!!! GGTCTCTGTAGTTTTTTTCG+AGG - chr1_2:59933762-59933781 None:intergenic 40.0%
TCATATACAGGTGTCTATGC+CGG + chr1_2:59934009-59934028 Msa0081400:intron 40.0%
AATGGTGGTAGCATTATTGG+TGG + chr1_2:59934090-59934109 Msa0081400:CDS 40.0%
TCTCTCCTGTATTGCTTTGA+AGG - chr1_2:59934118-59934137 None:intergenic 40.0%
AACTGTTGGATCATTCCAGA+AGG + chr1_2:59934271-59934290 Msa0081400:CDS 40.0%
ACTGTTGGATCATTCCAGAA+GGG + chr1_2:59934272-59934291 Msa0081400:CDS 40.0%
AGAAATTGCGTTTGGCAACA+TGG - chr1_2:59934303-59934322 None:intergenic 40.0%
TACCTAGCAGAAATTGCGTT+TGG - chr1_2:59934311-59934330 None:intergenic 40.0%
TGTTTCACCAGTATTCACGT+TGG + chr1_2:59934361-59934380 Msa0081400:intron 40.0%
TTACAGGAACACGATTCACT+AGG - chr1_2:59934394-59934413 None:intergenic 40.0%
CAAAGAAACAACTCCTTCTG+GGG - chr1_2:59934511-59934530 None:intergenic 40.0%
GCAAAGAAACAACTCCTTCT+GGG - chr1_2:59934512-59934531 None:intergenic 40.0%
TGCAAAGAAACAACTCCTTC+TGG - chr1_2:59934513-59934532 None:intergenic 40.0%
CAGTCAGGCACAAATAAACA+AGG - chr1_2:59935175-59935194 None:intergenic 40.0%
GTTATGTAGTTGTAGTGCAG+TGG + chr1_2:59935244-59935263 Msa0081400:intron 40.0%
GCTATGTAGGATCTAAGGAA+TGG - chr1_2:59935328-59935347 None:intergenic 40.0%
CTTCTGCTATGTAGGATCTA+AGG - chr1_2:59935333-59935352 None:intergenic 40.0%
GGTTGTTTACTTCAAAGCCA+GGG + chr1_2:59935381-59935400 Msa0081400:intron 40.0%
AGTCGCCATCATATAAGTTG+AGG + chr1_2:59935520-59935539 Msa0081400:intron 40.0%
! GGCTTCTTTTGGATAGGAAA+TGG - chr1_2:59935637-59935656 None:intergenic 40.0%
! CTTGATAGATGGTGAGTTGA+AGG + chr1_2:59935671-59935690 Msa0081400:CDS 40.0%
! GATTTGGTCAATTGCATCCA+CGG + chr1_2:59935694-59935713 Msa0081400:CDS 40.0%
TACCTAATGTTTGCACTCCT+TGG - chr1_2:59935722-59935741 None:intergenic 40.0%
GTTTCCAACAACAACGAAGA+AGG - chr1_2:59936102-59936121 None:intergenic 40.0%
TAGTCGTTCTTTACTATCCC+TGG - chr1_2:59936126-59936145 None:intergenic 40.0%
AACACTTGAAACAAGGTCAC+TGG - chr1_2:59936180-59936199 None:intergenic 40.0%
!! CTTCCATAGAAGAGTACTAC+AGG + chr1_2:59936279-59936298 Msa0081400:intron 40.0%
! CATCATGTCTTGATGATTGG+TGG + chr1_2:59936316-59936335 Msa0081400:intron 40.0%
! TCTTGATGATTGGTGGTTCT+GGG + chr1_2:59936323-59936342 Msa0081400:intron 40.0%
ACAATTGGATCCTGAGCATT+TGG - chr1_2:59936555-59936574 None:intergenic 40.0%
! TGCTCAGGATCCAATTGTTT+TGG + chr1_2:59936557-59936576 Msa0081400:CDS 40.0%
! GCTCAGGATCCAATTGTTTT+GGG + chr1_2:59936558-59936577 Msa0081400:CDS 40.0%
!! CTCAGGATCCAATTGTTTTG+GGG + chr1_2:59936559-59936578 Msa0081400:CDS 40.0%
!!! TCAGGATCCAATTGTTTTGG+GGG + chr1_2:59936560-59936579 Msa0081400:CDS 40.0%
ACTCTAACCCCCAAAACAAT+TGG - chr1_2:59936570-59936589 None:intergenic 40.0%
AAGAACTGTGGAATAGCTTG+AGG - chr1_2:59936597-59936616 None:intergenic 40.0%
GCTATTCCACAGTTCTTAGT+TGG + chr1_2:59936600-59936619 Msa0081400:CDS 40.0%
AGATGTCCAACTAAGAACTG+TGG - chr1_2:59936609-59936628 None:intergenic 40.0%
!! TTATTGTGTTAGGTTCTGGG+TGG + chr1_2:59936836-59936855 Msa0081400:three_prime_UTR 40.0%
AAAATCTACAAAATGGGGGG+TGG - chr1_2:59936925-59936944 None:intergenic 40.0%
! GTTTGCTTGCCACTTGCAAT+TGG - chr1_2:59931177-59931196 None:intergenic 45.0%
TGGCAAGCAAACACAGACAT+TGG + chr1_2:59931185-59931204 Msa0081400:five_prime_UTR 45.0%
TGAAGGTGGAGAAAGAAGGA+GGG - chr1_2:59931295-59931314 None:intergenic 45.0%
GAAGAAGGTGAGTGTAACCA+TGG - chr1_2:59931322-59931341 None:intergenic 45.0%
TTGAATTGGAGGAGGGGAAA+GGG - chr1_2:59931383-59931402 None:intergenic 45.0%
TTTGAATTGGAGGAGGGGAA+AGG - chr1_2:59931384-59931403 None:intergenic 45.0%
!! CAGTGGACTATGTATTGCTC+AGG + chr1_2:59931560-59931579 Msa0081400:CDS 45.0%
CCTCGGTAACAACAACATTG+GGG - chr1_2:59931614-59931633 None:intergenic 45.0%
GCCTCGGTAACAACAACATT+GGG - chr1_2:59931615-59931634 None:intergenic 45.0%
AAGAAACCCATCTCTCTCCA+CGG - chr1_2:59931667-59931686 None:intergenic 45.0%
! TGGAGAGAGATGGGTTTCTT+TGG + chr1_2:59931667-59931686 Msa0081400:CDS 45.0%
! GGAGAGAGATGGGTTTCTTT+GGG + chr1_2:59931668-59931687 Msa0081400:CDS 45.0%
! GATGGGTTTCTTTGGGAAGA+AGG + chr1_2:59931675-59931694 Msa0081400:CDS 45.0%
ATGGTGAGCATAGGATCAGA+AGG - chr1_2:59931717-59931736 None:intergenic 45.0%
TTCTGATCCTATGCTCACCA+TGG + chr1_2:59931716-59931735 Msa0081400:CDS 45.0%
GTAGATAAGCTAGCCGATAG+CGG + chr1_2:59931969-59931988 Msa0081400:intron 45.0%
!! TAGCCGATAGCGGATAAACT+AGG + chr1_2:59931979-59931998 Msa0081400:intron 45.0%
TTATTTGTGCAGGTGGACAG+TGG + chr1_2:59932477-59932496 Msa0081400:intron 45.0%
!! TGAGTATTGGTGGCAAGATC+AGG + chr1_2:59932613-59932632 Msa0081400:CDS 45.0%
!! GAGTATTGGTGGCAAGATCA+GGG + chr1_2:59932614-59932633 Msa0081400:CDS 45.0%
AGTTCGTGCGTCGAAATCTT+GGG + chr1_2:59932835-59932854 Msa0081400:CDS 45.0%
!! TGGCTCTGACCTGAACAAAA+AGG - chr1_2:59932888-59932907 None:intergenic 45.0%
CTCCGCCAGAACATAAAAGT+AGG - chr1_2:59932976-59932995 None:intergenic 45.0%
!!! GTTTTTAAGAGACGGGTTGG+GGG - chr1_2:59933137-59933156 None:intergenic 45.0%
! GAAGTAAGCTTGTCGCTTCT+TGG - chr1_2:59933903-59933922 None:intergenic 45.0%
!! AAGCAGCTTTTGGGAAAGTG+TGG + chr1_2:59934055-59934074 Msa0081400:CDS 45.0%
TGGAGCCTTCAAAGCAATAC+AGG + chr1_2:59934110-59934129 Msa0081400:CDS 45.0%
!! TATTTTTACGGATCACGGGG+TGG - chr1_2:59934156-59934175 None:intergenic 45.0%
! ACAGTTTGACCCTTTGGCTT+TGG - chr1_2:59934257-59934276 None:intergenic 45.0%
AAGCCAAAGGGTCAAACTGT+TGG + chr1_2:59934257-59934276 Msa0081400:CDS 45.0%
GATCCAACAGTTTGACCCTT+TGG - chr1_2:59934263-59934282 None:intergenic 45.0%
TGCCAAACGCAATTTCTGCT+AGG + chr1_2:59934306-59934325 Msa0081400:CDS 45.0%
AACATCGCCAACGTGAATAC+TGG - chr1_2:59934371-59934390 None:intergenic 45.0%
ATCGTGTTCCTGTAACCTGT+TGG + chr1_2:59934399-59934418 Msa0081400:intron 45.0%
TTGTTACCTAACCTGCCAAC+AGG - chr1_2:59934417-59934436 None:intergenic 45.0%
TGTTGGCAGGTTAGGTAACA+AGG + chr1_2:59934416-59934435 Msa0081400:intron 45.0%
TTGACGTATGAAACCCCAGA+AGG + chr1_2:59934495-59934514 Msa0081400:CDS 45.0%
ACTAGCAACATGGGAAGGAA+TGG - chr1_2:59934556-59934575 None:intergenic 45.0%
!! AATGGACTAGCAACATGGGA+AGG - chr1_2:59934561-59934580 None:intergenic 45.0%
!! CAGCAATGGACTAGCAACAT+GGG - chr1_2:59934565-59934584 None:intergenic 45.0%
AGGAATGGCCGGAAACATTA+CGG - chr1_2:59935313-59935332 None:intergenic 45.0%
TGTAGGATCTAAGGAATGGC+CGG - chr1_2:59935324-59935343 None:intergenic 45.0%
CGGTTGTTTACTTCAAAGCC+AGG + chr1_2:59935380-59935399 Msa0081400:intron 45.0%
TACTTCAAAGCCAGGGTTTC+AGG + chr1_2:59935388-59935407 Msa0081400:intron 45.0%
CATCACATCCCTTGTGAGAT+AGG + chr1_2:59935418-59935437 Msa0081400:intron 45.0%
ATCCCTTGTGAGATAGGCTT+TGG + chr1_2:59935424-59935443 Msa0081400:intron 45.0%
AGCCAAAGCCTATCTCACAA+GGG - chr1_2:59935429-59935448 None:intergenic 45.0%
AAGCCAAAGCCTATCTCACA+AGG - chr1_2:59935430-59935449 None:intergenic 45.0%
GCGACTATCATGCCAGAAAT+TGG - chr1_2:59935506-59935525 None:intergenic 45.0%
! GATGGTGAGTTGAAGGGATT+TGG + chr1_2:59935678-59935697 Msa0081400:CDS 45.0%
! AGCCAAGGAGTGCAAACATT+AGG + chr1_2:59935717-59935736 Msa0081400:CDS 45.0%
AATCGCGTGGCAACTTAAAG+TGG - chr1_2:59935782-59935801 None:intergenic 45.0%
TTCAAGAGTAGAACCCTTCC+AGG - chr1_2:59935944-59935963 None:intergenic 45.0%
! TCGTTGTTGTTGGAAACTCC+AGG + chr1_2:59936105-59936124 Msa0081400:intron 45.0%
! CGTTGTTGTTGGAAACTCCA+GGG + chr1_2:59936106-59936125 Msa0081400:intron 45.0%
GACATGATGAAGCAGTACAG+CGG - chr1_2:59936305-59936324 None:intergenic 45.0%
! GTCTTGATGATTGGTGGTTC+TGG + chr1_2:59936322-59936341 Msa0081400:intron 45.0%
!!! GATTGGTGGTTCTGGGTTTT+AGG + chr1_2:59936330-59936349 Msa0081400:intron 45.0%
!!! TTGTTTTGGGGGTTAGAGTG+TGG + chr1_2:59936571-59936590 Msa0081400:CDS 45.0%
!! TATGTGTCTGGTGTTGCCTT+GGG + chr1_2:59936699-59936718 Msa0081400:CDS 45.0%
TACTTCAGCTGCTATCTCGT+AGG - chr1_2:59936742-59936761 None:intergenic 45.0%
! TGCAGAGAGTGTACAAGTAG+CGG + chr1_2:59936775-59936794 Msa0081400:CDS 45.0%
!!! TTTCTAAAAAAAAAAAAATA+TGG + chr1_2:59933197-59933216 Msa0081400:intron 5.0%
!!! TTTTAAATATTAATCAAATA+TGG - chr1_2:59933723-59933742 None:intergenic 5.0%
AAGGTGGAGAAAGAAGGAGG+GGG - chr1_2:59931293-59931312 None:intergenic 50.0%
GAAGGTGGAGAAAGAAGGAG+GGG - chr1_2:59931294-59931313 None:intergenic 50.0%
GTGAAGGTGGAGAAAGAAGG+AGG - chr1_2:59931296-59931315 None:intergenic 50.0%
AAGGTGAGTGTAACCATGGC+GGG - chr1_2:59931318-59931337 None:intergenic 50.0%
GAAGGTGAGTGTAACCATGG+CGG - chr1_2:59931319-59931338 None:intergenic 50.0%
GGAAAGGGGAATGGAGATGA+GGG - chr1_2:59931368-59931387 None:intergenic 50.0%
TGAATTGGAGGAGGGGAAAG+GGG - chr1_2:59931382-59931401 None:intergenic 50.0%
ATTCCTCCGCAATGGAGCAA+CGG - chr1_2:59931455-59931474 None:intergenic 50.0%
!!! GGTGGTTTTAGTCGGAGATG+CGG - chr1_2:59931481-59931500 None:intergenic 50.0%
ACCAACAACCACACAGTCGA+CGG - chr1_2:59931532-59931551 None:intergenic 50.0%
! CCCCAATGTTGTTGTTACCG+AGG + chr1_2:59931611-59931630 Msa0081400:CDS 50.0%
CGCCTCGGTAACAACAACAT+TGG - chr1_2:59931616-59931635 None:intergenic 50.0%
ACCAACTCGATCTTTCGCCT+CGG - chr1_2:59931631-59931650 None:intergenic 50.0%
!! AGGCGAAAGATCGAGTTGGT+GGG + chr1_2:59931631-59931650 Msa0081400:CDS 50.0%
TGATCCTATGCTCACCATGG+TGG + chr1_2:59931719-59931738 Msa0081400:CDS 50.0%
CATACCACCATGGTGAGCAT+AGG - chr1_2:59931726-59931745 None:intergenic 50.0%
CGTAATGTGGCGCATGCAAT+TGG + chr1_2:59931782-59931801 Msa0081400:intron 50.0%
GTGGAATGGGAAATTGAGGC+CGG + chr1_2:59932551-59932570 Msa0081400:CDS 50.0%
!! GGCAAATCAGTTGGCTTTCC+CGG - chr1_2:59932579-59932598 None:intergenic 50.0%
GAAAACACACTGGAGGAGGA+GGG - chr1_2:59932665-59932684 None:intergenic 50.0%
AGAAAACACACTGGAGGAGG+AGG - chr1_2:59932666-59932685 None:intergenic 50.0%
GTGACAGGGTCATGAGGAAT+CGG + chr1_2:59932806-59932825 Msa0081400:intron 50.0%
GAGTTCGTGCGTCGAAATCT+TGG + chr1_2:59932834-59932853 Msa0081400:CDS 50.0%
GTTCGTGCGTCGAAATCTTG+GGG + chr1_2:59932836-59932855 Msa0081400:CDS 50.0%
TCAAATCCATCGTTGAGCGC+CGG + chr1_2:59933638-59933657 Msa0081400:intron 50.0%
AAATATCCGGCGCTCAACGA+TGG - chr1_2:59933647-59933666 None:intergenic 50.0%
!! CAGCTTTTGGGAAAGTGTGG+AGG + chr1_2:59934058-59934077 Msa0081400:CDS 50.0%
GTGTGGAGGCTCGAACAAAA+TGG + chr1_2:59934072-59934091 Msa0081400:CDS 50.0%
TGGAGGCTCGAACAAAATGG+TGG + chr1_2:59934075-59934094 Msa0081400:CDS 50.0%
GCAACATGGTAAGTCCCTTC+TGG - chr1_2:59934289-59934308 None:intergenic 50.0%
TGTTCCTGTAACCTGTTGGC+AGG + chr1_2:59934403-59934422 Msa0081400:intron 50.0%
CTAACCTGCCAACAGGTTAC+AGG - chr1_2:59934410-59934429 None:intergenic 50.0%
CTGTAACCTGTTGGCAGGTT+AGG + chr1_2:59934408-59934427 Msa0081400:intron 50.0%
!! GCAGCAATGGACTAGCAACA+TGG - chr1_2:59934566-59934585 None:intergenic 50.0%
ACAGACAGTGGTTGCAGCAA+TGG - chr1_2:59934579-59934598 None:intergenic 50.0%
ACGTCTTGGTACCTTACTGC+AGG + chr1_2:59934712-59934731 Msa0081400:intron 50.0%
TGGCCTACTGCAAGAGCTTA+TGG + chr1_2:59935049-59935068 Msa0081400:intron 50.0%
CAGCCATAAGCTCTTGCAGT+AGG - chr1_2:59935055-59935074 None:intergenic 50.0%
GGAATGGCCGGAAACATTAC+GGG - chr1_2:59935312-59935331 None:intergenic 50.0%
AAAGCCAGGGTTTCAGGATC+AGG + chr1_2:59935394-59935413 Msa0081400:intron 50.0%
ATGTCCTGATCCTGAAACCC+TGG - chr1_2:59935401-59935420 None:intergenic 50.0%
GAAATGGAAACTGCCGCAAC+TGG - chr1_2:59935621-59935640 None:intergenic 50.0%
TGGTGCTCGGTTAGGGAAAA+GGG - chr1_2:59935921-59935940 None:intergenic 50.0%
AAGAGTAGAACCCTTCCAGG+TGG - chr1_2:59935941-59935960 None:intergenic 50.0%
ATTGGAGGGGCTACCAATTC+TGG + chr1_2:59935968-59935987 Msa0081400:CDS 50.0%
TTGGAGGGGCTACCAATTCT+GGG + chr1_2:59935969-59935988 Msa0081400:CDS 50.0%
AAACAAGGTCACTGGACGTC+TGG - chr1_2:59936172-59936191 None:intergenic 50.0%
CGGCCTGTAGTACTCTTCTA+TGG - chr1_2:59936285-59936304 None:intergenic 50.0%
AAGGAACAGCCCCTCAAATC+CGG - chr1_2:59936670-59936689 None:intergenic 50.0%
GATTTGAGGGGCTGTTCCTT+GGG + chr1_2:59936670-59936689 Msa0081400:CDS 50.0%
ATTTGAGGGGCTGTTCCTTG+GGG + chr1_2:59936671-59936690 Msa0081400:CDS 50.0%
!! CTATGTGTCTGGTGTTGCCT+TGG + chr1_2:59936698-59936717 Msa0081400:CDS 50.0%
! GTTCTGGGTGGCTTCTGTTA+CGG + chr1_2:59936848-59936867 Msa0081400:three_prime_UTR 50.0%
TTCTGGGTGGCTTCTGTTAC+GGG + chr1_2:59936849-59936868 Msa0081400:three_prime_UTR 50.0%
CGGGTGAAGGTGGAGAAAGA+AGG - chr1_2:59931299-59931318 None:intergenic 55.0%
!! AGTGTAACCATGGCGGGTGA+AGG - chr1_2:59931312-59931331 None:intergenic 55.0%
GGTTTGAGAGGGTGGGAAGA+AGG - chr1_2:59931337-59931356 None:intergenic 55.0%
GGAGAAGGGTTTGAGAGGGT+GGG - chr1_2:59931344-59931363 None:intergenic 55.0%
ATGGAGATGAGGGCGGAGAA+GGG - chr1_2:59931358-59931377 None:intergenic 55.0%
AATGGAGATGAGGGCGGAGA+AGG - chr1_2:59931359-59931378 None:intergenic 55.0%
AAGGGGAATGGAGATGAGGG+CGG - chr1_2:59931365-59931384 None:intergenic 55.0%
GGGAAAGGGGAATGGAGATG+AGG - chr1_2:59931369-59931388 None:intergenic 55.0%
GGAGACGGAGAATGGGGTTA+TGG - chr1_2:59931434-59931453 None:intergenic 55.0%
AGCAACGGAGACGGAGAATG+GGG - chr1_2:59931440-59931459 None:intergenic 55.0%
GAGCAACGGAGACGGAGAAT+GGG - chr1_2:59931441-59931460 None:intergenic 55.0%
!! GGTTTTAGTCGGAGATGCGG+TGG - chr1_2:59931478-59931497 None:intergenic 55.0%
AACCACACAGTCGACGGATG+AGG - chr1_2:59931526-59931545 None:intergenic 55.0%
! TCCGTCGACTGTGTGGTTGT+TGG + chr1_2:59931528-59931547 Msa0081400:CDS 55.0%
GTCGACTGTGTGGTTGTTGG+TGG + chr1_2:59931531-59931550 Msa0081400:CDS 55.0%
! GACTGTGTGGTTGTTGGTGG+TGG + chr1_2:59931534-59931553 Msa0081400:CDS 55.0%
!! GTTGTTGGTGGTGGCATCAG+TGG + chr1_2:59931543-59931562 Msa0081400:CDS 55.0%
ACCGAGGCGAAAGATCGAGT+TGG + chr1_2:59931627-59931646 Msa0081400:CDS 55.0%
!! GAGGCGAAAGATCGAGTTGG+TGG + chr1_2:59931630-59931649 Msa0081400:CDS 55.0%
TGACACCGCCTCACACATGT+TGG + chr1_2:59932435-59932454 Msa0081400:intron 55.0%
GCAGGTGGACAGTGGTTTGA+AGG + chr1_2:59932485-59932504 Msa0081400:intron 55.0%
! ATTGGTGGCAAGATCAGGGC+TGG + chr1_2:59932618-59932637 Msa0081400:CDS 55.0%
ACGAAGGTGACAGGGTCATG+AGG + chr1_2:59932800-59932819 Msa0081400:intron 55.0%
!! TTAAGAGACGGGTTGGGGGA+TGG - chr1_2:59933133-59933152 None:intergenic 55.0%
TAGGCGTCTGCCAAAGCCAA+AGG + chr1_2:59934244-59934263 Msa0081400:intron 55.0%
AGGCGTCTGCCAAAGCCAAA+GGG + chr1_2:59934245-59934264 Msa0081400:intron 55.0%
! GAAAGTGCATCTGCAGCAGC+AGG - chr1_2:59935582-59935601 None:intergenic 55.0%
ATGGAAACTGCCGCAACTGG+AGG - chr1_2:59935618-59935637 None:intergenic 55.0%
CAATTGCATCCACGGAGCCA+AGG + chr1_2:59935702-59935721 Msa0081400:CDS 55.0%
GTGGTGCTCGGTTAGGGAAA+AGG - chr1_2:59935922-59935941 None:intergenic 55.0%
TTCCAGGTGGTGCTCGGTTA+GGG - chr1_2:59935928-59935947 None:intergenic 55.0%
TAACCGAGCACCACCTGGAA+GGG + chr1_2:59935928-59935947 Msa0081400:CDS 55.0%
GGATTTGAGGGGCTGTTCCT+TGG + chr1_2:59936669-59936688 Msa0081400:CDS 55.0%
TTTGAGGGGCTGTTCCTTGG+GGG + chr1_2:59936672-59936691 Msa0081400:CDS 55.0%
CAGACACATAGTTGCCCCCA+AGG - chr1_2:59936689-59936708 None:intergenic 55.0%
CTTGGGGGCAACTATGTGTC+TGG + chr1_2:59936687-59936706 Msa0081400:CDS 55.0%
!! TGTCTGGTGTTGCCTTGGGA+AGG + chr1_2:59936703-59936722 Msa0081400:CDS 55.0%
! TGCCTTGGGAAGGTGTGTTG+AGG + chr1_2:59936713-59936732 Msa0081400:CDS 55.0%
! GCCTTGGGAAGGTGTGTTGA+GGG + chr1_2:59936714-59936733 Msa0081400:CDS 55.0%
TCCCTCAACACACCTTCCCA+AGG - chr1_2:59936718-59936737 None:intergenic 55.0%
TTCTCCACCTTCACCCGCCA+TGG + chr1_2:59931302-59931321 Msa0081400:exon 60.0%
!! GTAACCATGGCGGGTGAAGG+TGG - chr1_2:59931309-59931328 None:intergenic 60.0%
CGGAGAAGGGTTTGAGAGGG+TGG - chr1_2:59931345-59931364 None:intergenic 60.0%
GGGCGGAGAAGGGTTTGAGA+GGG - chr1_2:59931348-59931367 None:intergenic 60.0%
AGGGCGGAGAAGGGTTTGAG+AGG - chr1_2:59931349-59931368 None:intergenic 60.0%
TGGAGGAGGGGAAAGGGGAA+TGG - chr1_2:59931377-59931396 None:intergenic 60.0%
GGAGCAACGGAGACGGAGAA+TGG - chr1_2:59931442-59931461 None:intergenic 60.0%
CCGCAATGGAGCAACGGAGA+CGG - chr1_2:59931449-59931468 None:intergenic 60.0%
CCGTCTCCGTTGCTCCATTG+CGG + chr1_2:59931446-59931465 Msa0081400:CDS 60.0%
TCTCCGTTGCTCCATTGCGG+AGG + chr1_2:59931449-59931468 Msa0081400:CDS 60.0%
! TGCGGTGGATTCCTCCGCAA+TGG - chr1_2:59931463-59931482 None:intergenic 60.0%
GTCGACGGATGAGGACTCTC+CGG - chr1_2:59931517-59931536 None:intergenic 60.0%
! GTCCTCATCCGTCGACTGTG+TGG + chr1_2:59931521-59931540 Msa0081400:CDS 60.0%
TGGGAAATTGAGGCCGGTGC+CGG + chr1_2:59932557-59932576 Msa0081400:CDS 60.0%
!! TCAGTTGGCTTTCCCGGCAC+CGG - chr1_2:59932573-59932592 None:intergenic 60.0%
!! GGCAAGATCAGGGCTGGCTT+TGG + chr1_2:59932624-59932643 Msa0081400:CDS 60.0%
!! AGGGCTGGCTTTGGAGCACT+TGG + chr1_2:59932633-59932652 Msa0081400:CDS 60.0%
GTTTGCACTCCTTGGCTCCG+TGG - chr1_2:59935714-59935733 None:intergenic 60.0%
TTCCCTAACCGAGCACCACC+TGG + chr1_2:59935923-59935942 Msa0081400:CDS 60.0%
CTTCCAGGTGGTGCTCGGTT+AGG - chr1_2:59935929-59935948 None:intergenic 60.0%
CTAACCGAGCACCACCTGGA+AGG + chr1_2:59935927-59935946 Msa0081400:CDS 60.0%
GAACCCTTCCAGGTGGTGCT+CGG - chr1_2:59935934-59935953 None:intergenic 60.0%
GGGAAATTGAGGCCGGTGCC+GGG + chr1_2:59932558-59932577 Msa0081400:CDS 65.0%
GCGTCGAAATCTTGGGGCCG+AGG + chr1_2:59932842-59932861 Msa0081400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59931167 59937058 59931167 ID=Msa0081400;Name=Msa0081400
chr1_2 mRNA 59931167 59937058 59931167 ID=Msa0081400-mRNA-1;Parent=Msa0081400;Name=Msa0081400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=134|0.88|0.9|1|0.88|0.8|10|264|545
chr1_2 exon 59931167 59931273 59931167 ID=Msa0081400-mRNA-1:exon:19482;Parent=Msa0081400-mRNA-1
chr1_2 exon 59931294 59931740 59931294 ID=Msa0081400-mRNA-1:exon:19483;Parent=Msa0081400-mRNA-1
chr1_2 exon 59932507 59932674 59932507 ID=Msa0081400-mRNA-1:exon:19484;Parent=Msa0081400-mRNA-1
chr1_2 exon 59932813 59932897 59932813 ID=Msa0081400-mRNA-1:exon:19485;Parent=Msa0081400-mRNA-1
chr1_2 exon 59934019 59934166 59934019 ID=Msa0081400-mRNA-1:exon:19486;Parent=Msa0081400-mRNA-1
chr1_2 exon 59934247 59934327 59934247 ID=Msa0081400-mRNA-1:exon:19487;Parent=Msa0081400-mRNA-1
chr1_2 exon 59934425 59934596 59934425 ID=Msa0081400-mRNA-1:exon:19488;Parent=Msa0081400-mRNA-1
chr1_2 exon 59935579 59935738 59935579 ID=Msa0081400-mRNA-1:exon:19489;Parent=Msa0081400-mRNA-1
chr1_2 exon 59935900 59936003 59935900 ID=Msa0081400-mRNA-1:exon:19490;Parent=Msa0081400-mRNA-1
chr1_2 exon 59936495 59937058 59936495 ID=Msa0081400-mRNA-1:exon:19491;Parent=Msa0081400-mRNA-1
chr1_2 five_prime_UTR 59931167 59931273 59931167 ID=Msa0081400-mRNA-1:five_prime_utr;Parent=Msa0081400-mRNA-1
chr1_2 five_prime_UTR 59931294 59931320 59931294 ID=Msa0081400-mRNA-1:five_prime_utr;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59931321 59931740 59931321 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59932507 59932674 59932507 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59932813 59932897 59932813 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59934019 59934166 59934019 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59934247 59934327 59934247 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59934425 59934596 59934425 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59935579 59935738 59935579 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59935900 59936003 59935900 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 CDS 59936495 59936794 59936495 ID=Msa0081400-mRNA-1:cds;Parent=Msa0081400-mRNA-1
chr1_2 three_prime_UTR 59936795 59937058 59936795 ID=Msa0081400-mRNA-1:three_prime_utr;Parent=Msa0081400-mRNA-1
Gene Sequence

>Msa0081400

ATGGTTACACTCACCTTCTTCCCACCCTCTCAAACCCTTCTCCGCCCTCATCTCCATTCCCCTTTCCCCTCCTCCAATTCAAATTCAAAATTCATTCGCAATCGCAGTCACCATAACCCCATTCTCCGTCTCCGTTGCTCCATTGCGGAGGAATCCACCGCATCTCCGACTAAAACCACCTCAAAATCAAATTCCGGAGAGTCCTCATCCGTCGACTGTGTGGTTGTTGGTGGTGGCATCAGTGGACTATGTATTGCTCAGGCTCTTTCTACAAAGCATGCTGATGGTGTCCCCAATGTTGTTGTTACCGAGGCGAAAGATCGAGTTGGTGGGAATATTATTACCGTGGAGAGAGATGGGTTTCTTTGGGAAGAAGGTCCTAATAGTTTTCAACCTTCTGATCCTATGCTCACCATGGTGGACGATCTTGTTTTGGGTGATCCTGATGCACCTAGATTTGTGTTGTGGAATGGGAAATTGAGGCCGGTGCCGGGAAAGCCAACTGATTTGCCTTTCTTTGACTTAATGAGTATTGGTGGCAAGATCAGGGCTGGCTTTGGAGCACTTGGAATTCGCCCTCCTCCTCCAGGTCATGAGGAATCGGTTGAAGAGTTCGTGCGTCGAAATCTTGGGGCCGAGGTTTTTGAACGCCTGATAGAGCCTTTTTGTTCAGGTGTCTATGCCGGCGATCCTTCAAAATTAAGTATGAAAGCAGCTTTTGGGAAAGTGTGGAGGCTCGAACAAAATGGTGGTAGCATTATTGGTGGAGCCTTCAAAGCAATACAGGAGAGAAATAAAGCTTCAAAACCACCCCGTGATCCGCGTCTGCCAAAGCCAAAGGGTCAAACTGTTGGATCATTCCAGAAGGGACTTACCATGTTGCCAAACGCAATTTCTGCTAGGTTAGGTAACAAGGTGAAGTTATCTTGGAAGCTTTTAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACGTATGAAACCCCAGAAGGAGTTGTTTCTTTGCAAAGCAAGACTGTTATCATGACCATTCCTTCCCATGTTGCTAGTCCATTGCTGCAACCACTGTCTCCTGCTGCTGCAGATGCACTTTCAAAGTTTTATTATCCTCCAGTTGCGGCAGTTTCCATTTCCTATCCAAAAGAAGCCATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGATTTGGTCAATTGCATCCACGGAGCCAAGGAGTGCAAACATTAGGAACTATATACAGCTCATCCCTTTTCCCTAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGGGCTACCAATTCTGGGATTTTATCAAAGACGGAGGGTGAACTTGTTGAAGCAGTTGACCGAGATTTGAGAAAAATCCTTATAAATCCAAATGCTCAGGATCCAATTGTTTTGGGGGTTAGAGTGTGGCCTCAAGCTATTCCACAGTTCTTAGTTGGACATCTTGATCTTCTAGATGCTGCTAAAGTTTCTCTTAAAAATACCGGATTTGAGGGGCTGTTCCTTGGGGGCAACTATGTGTCTGGTGTTGCCTTGGGAAGGTGTGTTGAGGGAGCCTACGAGATAGCAGCTGAAGTAAATGATTTTCTCTTGCAGAGAGTGTACAAGTAG
Protein sequence

>Msa0081400

MVTLTFFPPSQTLLRPHLHSPFPSSNSNSKFIRNRSHHNPILRLRCSIAEESTASPTKTTSKSNSGESSSVDCVVVGGGISGLCIAQALSTKHADGVPNVVVTEAKDRVGGNIITVERDGFLWEEGPNSFQPSDPMLTMVDDLVLGDPDAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKIRAGFGALGIRPPPPGHEESVEEFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEQNGGSIIGGAFKAIQERNKASKPPRDPRLPKPKGQTVGSFQKGLTMLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASPLLQPLSPAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVQTLGTIYSSSLFPNRAPPGRVLLLNYIGGATNSGILSKTEGELVEAVDRDLRKILINPNAQDPIVLGVRVWPQAIPQFLVGHLDLLDAAKVSLKNTGFEGLFLGGNYVSGVALGRCVEGAYEIAAEVNDFLLQRVYK*