AlfalfaGEDB | Msa0930850

M. sativa cultivar zhongmu-4 / Msa0930850

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003713 GO:0003824 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018026 GO:0018027 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0046975 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930850	XP_003630935.1	97.516	483	11	1	1	483	1	482	0.0	963

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930850	sp\|Q5ZML9\|SETD3_CHICK	23.044	473	316	15	6	465	44	481	2.34e-18	91.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0930850	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0930850	0.806894	6.589597e-50	-8.615850e-47
Msa0000610	Msa0930850	0.801762	7.726250e-49	-8.615850e-47
Msa0001510	Msa0930850	0.849302	3.527560e-60	-8.615850e-47
Msa0001540	Msa0930850	0.804941	1.696252e-49	-8.615850e-47
Msa0002690	Msa0930850	0.833206	6.093093e-56	-8.615850e-47
Msa0002700	Msa0930850	0.833342	5.633668e-56	-8.615850e-47
Msa0004180	Msa0930850	0.827740	1.323893e-54	-8.615850e-47
Msa0007570	Msa0930850	0.838454	2.848518e-57	-8.615850e-47
Msa0011910	Msa0930850	0.822219	2.663132e-53	-8.615850e-47
Msa0015220	Msa0930850	0.834790	2.444700e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930850	MtrunA17_Chr8g0391671	97.516	483	11	1	1	483	1	482	0.0	963
Msa0930850	MtrunA17_Chr5g0397811	92.381	105	7	1	196	300	3	106	5.40e-64	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930850	AT1G24610.1	66.385	473	154	4	11	480	4	474	0.0	631

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Find 118 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAGAGTAGAGTGAAA+GGG	0.539984	6_2:+79956351	Msa0930850:five_prime_UTR
AAAGTCAAGCATGCATTAGT+CGG	0.594145	6_2:+79957613	Msa0930850:CDS
AAATGGGTAACAAGAGAAGG+TGG	0.609234	6_2:+79956526	Msa0930850:CDS
AAATTCTTGATGTCTTCCCC+AGG	0.592666	6_2:-79957008	None:intergenic
AAGCCGGTAGCACAAAGATG+TGG	0.568257	6_2:+79957845	Msa0930850:CDS
AAGGAGACGGTCACTACTGA+AGG	0.581558	6_2:+79959570	Msa0930850:CDS
AAGTGCAGAGGAATGTGTTG+AGG	0.602415	6_2:-79956652	None:intergenic
AAGTGTACCTGGTGAAGAAT+AGG	0.446363	6_2:-79957041	None:intergenic
AATAATAGAAGGTCGTTTGT+TGG	0.431982	6_2:+79959239	Msa0930850:CDS
AATATGGTTATAGTTGGTGG+TGG	0.531556	6_2:+79956388	Msa0930850:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTAGAGTAGAGTGAAA+GGG	+	chr6_2:79956351-79956370	Msa0930850:five_prime_UTR	30.0%
CTGGTTAATATGGTTATAGT+TGG	+	chr6_2:79956382-79956401	Msa0930850:exon	30.0%
GTTAATATGGTTATAGTTGG+TGG	+	chr6_2:79956385-79956404	Msa0930850:exon	30.0%
GTTGAATAAATTGGACAATG+TGG	+	chr6_2:79956853-79956872	Msa0930850:intron	30.0%
TCGGTGTAAATAATGTTAGT+AGG	+	chr6_2:79957205-79957224	Msa0930850:intron	30.0%
CTCAGTGTCTATTAATTATG+TGG	+	chr6_2:79957348-79957367	Msa0930850:intron	30.0%
CAAATTGCTCATTTCAAAAG+TGG	-	chr6_2:79957425-79957444	None:intergenic	30.0%
GCTCAAAATCAAGAAGAAAT+CGG	-	chr6_2:79957591-79957610	None:intergenic	30.0%
ATGGTAACAAGCAATCAAAT+GGG	+	chr6_2:79957734-79957753	Msa0930850:CDS	30.0%
GATTACACATGTCAATTAGA+GGG	-	chr6_2:79957786-79957805	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	79956322	79959735	79956322	ID=Msa0930850;Name=Msa0930850
chr6_2	mRNA	79956322	79959735	79956322	ID=Msa0930850-mRNA-1;Parent=Msa0930850;Name=Msa0930850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69\|1\|1\|1\|1\|1\|5\|139\|483
chr6_2	exon	79956322	79956733	79956322	ID=Msa0930850-mRNA-1:exon:13893;Parent=Msa0930850-mRNA-1
chr6_2	exon	79956889	79957055	79956889	ID=Msa0930850-mRNA-1:exon:13894;Parent=Msa0930850-mRNA-1
chr6_2	exon	79957574	79957873	79957574	ID=Msa0930850-mRNA-1:exon:13895;Parent=Msa0930850-mRNA-1
chr6_2	exon	79958023	79958286	79958023	ID=Msa0930850-mRNA-1:exon:13896;Parent=Msa0930850-mRNA-1
chr6_2	exon	79959219	79959735	79959219	ID=Msa0930850-mRNA-1:exon:13897;Parent=Msa0930850-mRNA-1
chr6_2	five_prime_UTR	79956322	79956390	79956322	ID=Msa0930850-mRNA-1:five_prime_utr;Parent=Msa0930850-mRNA-1
chr6_2	CDS	79956391	79956733	79956391	ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2	CDS	79956889	79957055	79956889	ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2	CDS	79957574	79957873	79957574	ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2	CDS	79958023	79958286	79958023	ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2	CDS	79959219	79959596	79959219	ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2	three_prime_UTR	79959597	79959735	79959597	ID=Msa0930850-mRNA-1:three_prime_utr;Parent=Msa0930850-mRNA-1

Gene Sequence

>Msa0930850

ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGCGCATCTTCATCTTCATCATCATCACGAGTAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATAGCACAACTCGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTCTGCACTTCAACGATGATGATCGCAACTCTCACTCTCTCCTCCTTCAATTAACCTCCCATGTTCCCGATGAATTGTGGGCAATGAAGCTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCACTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATATGCATCCGTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTTTCATCAAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAGCCGGTAGCACAAAGATGTGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAGGAAGATGACCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCCGCTGGAGTTTCTTCACCAAATTTCTCTACACCTGCTCCATGGCAGGAACTTATTCTATCTCAGCTAAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGGCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCAAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTAGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGACGGTCACTACTGAAGGCTAA

Protein sequence

>Msa0930850

MVIVGGGSWKTAMLMSSSLSHVRPLTCASSSSSSSRVAPHPHDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNDDDRNSHSLLLQLTSHVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDMHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMWVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLDAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTTEG*