AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930850 MtrunA17_Chr8g0391671 97.516 483 11 1 1 483 1 482 0.0 963
Msa0930850 MtrunA17_Chr5g0397811 92.381 105 7 1 196 300 3 106 5.40e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930850 AT1G24610.1 66.385 473 154 4 11 480 4 474 0.0 631

Find 118 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCATCATCCATTAATT+TGG 0.191527 6_2:-79959427 None:intergenic
CAAATATGATGGTGCTCTTT+TGG 0.205619 6_2:+79958151 Msa0930850:CDS
GGCATTGAATCTGGTTAATA+TGG 0.230169 6_2:+79956372 Msa0930850:exon
CTCGATTCCTCAAATGGTTT+AGG 0.230593 6_2:+79956580 Msa0930850:CDS
ACACTTTCCCACCAAATTAA+TGG 0.235094 6_2:+79959416 Msa0930850:CDS
CTATAATTACAGACTTCTTT+TGG 0.248268 6_2:-79959503 None:intergenic
CATCCATAGCAAAGTAATAA+AGG 0.272419 6_2:-79958056 None:intergenic
TCGATTCCTCAAATGGTTTA+GGG 0.287954 6_2:+79956581 Msa0930850:CDS
TCCTGAACAATTCTAGCATT+TGG 0.291593 6_2:-79957817 None:intergenic
AGCTAAAACATCAAATAAAA+AGG 0.305384 6_2:-79959727 None:intergenic
TTATTGAAGCAGGGTGCTTC+AGG 0.306570 6_2:+79959450 Msa0930850:CDS
CTCAAATGGTTTAGGGTTAG+TGG 0.331608 6_2:+79956588 Msa0930850:CDS
CCACCAAACGGATGCATATC+TGG 0.334061 6_2:-79957643 None:intergenic
TCTTCCCCAGGAAAGAAAAT+AGG 0.342405 6_2:-79956996 None:intergenic
GAGATGAAGCATCTACTTCT+TGG 0.347456 6_2:-79957666 None:intergenic
TAAGTGACATTGAACACTTT+TGG 0.368647 6_2:+79959642 Msa0930850:three_prime_UTR
TCCAAATGCTAGAATTGTTC+AGG 0.369501 6_2:+79957816 Msa0930850:CDS
CAATTAACCTCCCATGTTCC+CGG 0.370584 6_2:+79956712 Msa0930850:CDS
GGAGCAGGTGTAGAGAAATT+TGG 0.377711 6_2:-79958206 None:intergenic
GAAGTAGATGCTTCATCTCT+TGG 0.384991 6_2:+79957670 Msa0930850:CDS
CATGGTAACAAGCAATCAAA+TGG 0.388478 6_2:+79957733 Msa0930850:CDS
CACCCACATCTTTGTGCTAC+CGG 0.389753 6_2:-79957848 None:intergenic
AGTACTCCTTGCAAGTGATA+TGG 0.393467 6_2:+79959272 Msa0930850:CDS
CTTCATGAAAGGGCAAAACT+TGG 0.399181 6_2:+79956924 Msa0930850:CDS
GCTCAAAATCAAGAAGAAAT+CGG 0.402032 6_2:-79957588 None:intergenic
GCAATTAGGTCAGTACCAAT+TGG 0.411464 6_2:-79956625 None:intergenic
GTGGAAGATACCTTGAGATC+TGG 0.412921 6_2:-79958275 None:intergenic
GAGTGAAAGGGCATTGAATC+TGG 0.416960 6_2:+79956363 Msa0930850:five_prime_UTR
CACTAACCCTAAACCATTTG+AGG 0.419235 6_2:-79956587 None:intergenic
ATCCACACGATCTCATCAAA+TGG 0.420118 6_2:+79956509 Msa0930850:CDS
GACCCTTTATTACTTTGCTA+TGG 0.431078 6_2:+79958053 Msa0930850:CDS
CTGGTTAATATGGTTATAGT+TGG 0.431597 6_2:+79956382 Msa0930850:exon
AATAATAGAAGGTCGTTTGT+TGG 0.431982 6_2:+79959239 Msa0930850:CDS
GCACAACTCGATTCCTCAAA+TGG 0.432361 6_2:+79956574 Msa0930850:CDS
TTAGATGCTGAGGCTCCTCT+TGG 0.432705 6_2:+79959333 Msa0930850:CDS
ATCCATAGCAAAGTAATAAA+GGG 0.432856 6_2:-79958055 None:intergenic
TGATTACACATGTCAATTAG+AGG 0.440828 6_2:-79957784 None:intergenic
GATGAAGATGCGCATGTTAG+TGG 0.442848 6_2:-79956460 None:intergenic
AAGTGTACCTGGTGAAGAAT+AGG 0.446363 6_2:-79957041 None:intergenic
TTATAGTTGGTGGTGGTAGT+TGG 0.452028 6_2:+79956395 Msa0930850:CDS
TTGAGCTCGATACAGTCATA+AGG 0.453734 6_2:-79958131 None:intergenic
GAAAAGTAGAGTAGAGTGAA+AGG 0.459061 6_2:+79956350 Msa0930850:five_prime_UTR
TAGGAAGAGTGTAAGTTTGT+GGG 0.460771 6_2:-79956977 None:intergenic
TGAATTGTGGGCAATGAAGC+TGG 0.463428 6_2:+79956890 Msa0930850:CDS
GTTAATATGGTTATAGTTGG+TGG 0.472157 6_2:+79956385 Msa0930850:exon
TGAGCTCGATACAGTCATAA+GGG 0.476129 6_2:-79958130 None:intergenic
TGATGAATCTTTATTGAAGC+AGG 0.476763 6_2:+79959440 Msa0930850:CDS
TTCATCATCCATTAATTTGG+TGG 0.478727 6_2:-79959424 None:intergenic
TTCATGTAACAGGTGAGCTT+AGG 0.480929 6_2:+79959207 Msa0930850:intron
ATGTAACAGGTGAGCTTAGG+TGG 0.482998 6_2:+79959210 Msa0930850:intron
TGTGTTGAGGAAGAGCAATT+AGG 0.483022 6_2:-79956639 None:intergenic
GATGCTGCGAGCATGGCCGC+TGG 0.487107 6_2:+79958173 Msa0930850:CDS
ATAGGAAGAGTGTAAGTTTG+TGG 0.491387 6_2:-79956978 None:intergenic
CAATTAGGTCAGTACCAATT+GGG 0.491707 6_2:-79956624 None:intergenic
TTTGAAGCTTCTTCATGAAA+GGG 0.494538 6_2:+79956914 Msa0930850:CDS
GTTTGAAGCTTCTTCATGAA+AGG 0.494844 6_2:+79956913 Msa0930850:CDS
CTCTACACCTGCTCCATGGC+AGG 0.495127 6_2:+79958214 Msa0930850:CDS
TGGTTTAGGGTTAGTGGCTA+AGG 0.496899 6_2:+79956594 Msa0930850:CDS
ACACCAGATATGCATCCGTT+TGG 0.501980 6_2:+79957640 Msa0930850:CDS
GCTAAGGAAGATATCCCAAT+TGG 0.505887 6_2:+79956610 Msa0930850:CDS
CCAGATATGCATCCGTTTGG+TGG 0.506084 6_2:+79957643 Msa0930850:CDS
TGTGGGAGATTACTGATGTA+TGG 0.507516 6_2:-79956960 None:intergenic
GCATTTGGCAGATGAATTGT+GGG 0.511625 6_2:+79956878 Msa0930850:intron
TCAAGAGCATTCAAGTTACA+TGG 0.514609 6_2:+79957715 Msa0930850:CDS
GGTAAAGCTTCTTTCATCAA+AGG 0.514902 6_2:+79959551 Msa0930850:CDS
CTATCTCAGCTAAATCTAGC+TGG 0.514942 6_2:+79958245 Msa0930850:CDS
GGTGGGCAAGAAATAATAGA+AGG 0.517366 6_2:+79959228 Msa0930850:CDS
TAGATGCTTCATCTCTTGGA+TGG 0.521095 6_2:+79957674 Msa0930850:CDS
TCATCATCCATTAATTTGGT+GGG 0.525608 6_2:-79959423 None:intergenic
ATAAGTTCCTGCCATGGAGC+AGG 0.528390 6_2:-79958221 None:intergenic
GAAGCTTTACCTTCCTTGAG+AGG 0.528724 6_2:-79959539 None:intergenic
AATGACACACAGAGCAATCA+AGG 0.529045 6_2:-79959385 None:intergenic
AATATGGTTATAGTTGGTGG+TGG 0.531556 6_2:+79956388 Msa0930850:exon
TCAATTAGAGGGAGCATCAT+GGG 0.532994 6_2:-79957772 None:intergenic
TCCACACGATCTCATCAAAT+GGG 0.536822 6_2:+79956510 Msa0930850:CDS
AAAAGTAGAGTAGAGTGAAA+GGG 0.539984 6_2:+79956351 Msa0930850:five_prime_UTR
TGGTGGTGGTAGTTGGAAAA+CGG 0.543989 6_2:+79956402 Msa0930850:CDS
GTCAATTAGAGGGAGCATCA+TGG 0.544285 6_2:-79957773 None:intergenic
ATGGTAACAAGCAATCAAAT+GGG 0.547291 6_2:+79957734 Msa0930850:CDS
TCACAAATCCATAATCAAGA+AGG 0.549483 6_2:-79958097 None:intergenic
TCTACTTCTTGGCCACCAAA+CGG 0.549674 6_2:-79957655 None:intergenic
ATCAAATGGGTAACAAGAGA+AGG 0.550397 6_2:+79956523 Msa0930850:CDS
TGTGGCTGAGAAAGCAATCA+AGG 0.555448 6_2:+79958025 Msa0930850:CDS
AGCATTTGGCAGATGAATTG+TGG 0.556575 6_2:+79956877 Msa0930850:intron
CTATGCTCCTATTCTTCACC+AGG 0.562752 6_2:+79957034 Msa0930850:CDS
AAGCCGGTAGCACAAAGATG+TGG 0.568257 6_2:+79957845 Msa0930850:CDS
TGGAGAAACTCCAGATCTCA+AGG 0.573409 6_2:+79958265 Msa0930850:CDS
GCTTCTTTCATCAAAGGAGA+CGG 0.577964 6_2:+79959557 Msa0930850:CDS
AAGGAGACGGTCACTACTGA+AGG 0.581558 6_2:+79959570 Msa0930850:CDS
GATGAATCTTTATTGAAGCA+GGG 0.583312 6_2:+79959441 Msa0930850:CDS
CACTTGCCATATCACTTGCA+AGG 0.586602 6_2:-79959278 None:intergenic
CATGGGAGGTTAATTGAAGG+AGG 0.592569 6_2:-79956705 None:intergenic
AAATTCTTGATGTCTTCCCC+AGG 0.592666 6_2:-79957008 None:intergenic
TTGATGAGATCGTGTGGATG+AGG 0.593115 6_2:-79956505 None:intergenic
AAAGTCAAGCATGCATTAGT+CGG 0.594145 6_2:+79957613 Msa0930850:CDS
GCTCTGTGTGTCATTGCACT+AGG 0.596790 6_2:+79959393 Msa0930850:CDS
GAACATGGGAGGTTAATTGA+AGG 0.597020 6_2:-79956708 None:intergenic
GATTACACATGTCAATTAGA+GGG 0.597579 6_2:-79957783 None:intergenic
ACTTAAGTCTTTAGATGCTG+AGG 0.601367 6_2:+79959323 Msa0930850:CDS
AAGTGCAGAGGAATGTGTTG+AGG 0.602415 6_2:-79956652 None:intergenic
CTAAAGACTTAAGTGTGTTG+AGG 0.608231 6_2:-79959314 None:intergenic
AAATGGGTAACAAGAGAAGG+TGG 0.609234 6_2:+79956526 Msa0930850:CDS
AGATGCTTCATCTCTTGGAT+GGG 0.610544 6_2:+79957675 Msa0930850:CDS
GAATTGTGGGCAATGAAGCT+GGG 0.611628 6_2:+79956891 Msa0930850:CDS
ATTTCTCTACACCTGCTCCA+TGG 0.612721 6_2:+79958210 Msa0930850:CDS
TAGCACAAAGATGTGGGTGA+AGG 0.614670 6_2:+79957852 Msa0930850:CDS
AGCCGGTAGCACAAAGATGT+GGG 0.619848 6_2:+79957846 Msa0930850:CDS
ATTGTTCAGGAACAAGAAGC+CGG 0.621234 6_2:+79957829 Msa0930850:CDS
TGTAACAGGTGAGCTTAGGT+GGG 0.630878 6_2:+79959211 Msa0930850:intron
GATAGAATAAGTTCCTGCCA+TGG 0.632180 6_2:-79958227 None:intergenic
TCATCATCGTTGAAGTGCAG+AGG 0.633506 6_2:-79956664 None:intergenic
TGTATCGAGCTCAAATATGA+TGG 0.639565 6_2:+79958140 Msa0930850:CDS
AGGTCATTTGCAACACCAAG+AGG 0.646673 6_2:-79959348 None:intergenic
TTACTTACCGGGAACATGGG+AGG 0.654333 6_2:-79956719 None:intergenic
ACCCATTTGATGAGATCGTG+TGG 0.664082 6_2:-79956511 None:intergenic
TCAAGGTACGAAATACAGCA+AGG 0.687972 6_2:-79959368 None:intergenic
GTTGTGCTATCTTCACAGCA+CGG 0.695139 6_2:-79956558 None:intergenic
ATTTGGTGAAGAAACTCCAG+CGG 0.710039 6_2:-79958189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATGAAAACTACTAT+TGG + chr6_2:79958330-79958349 Msa0930850:intron 15.0%
!! TATATTTATTAACCATTCAA+TGG - chr6_2:79958478-79958497 None:intergenic 15.0%
!!! TTCAAATATACATGATTTTA+AGG - chr6_2:79958643-79958662 None:intergenic 15.0%
!!! AATGTTTTTATAGCAAATAT+TGG + chr6_2:79959016-79959035 Msa0930850:intron 15.0%
!! AAAAATAGTATAATGCTTTG+TGG + chr6_2:79957104-79957123 Msa0930850:intron 20.0%
!! ATAACTAAATCGTGATAATT+AGG - chr6_2:79957393-79957412 None:intergenic 20.0%
!!! GTCATTATACATAATTTTTC+AGG - chr6_2:79958724-79958743 None:intergenic 20.0%
!! TTTAGATCGTTAAGTATATA+TGG - chr6_2:79958796-79958815 None:intergenic 20.0%
!! AACATAATGCGTAAAAATAA+TGG - chr6_2:79958944-79958963 None:intergenic 20.0%
!! AAAGTTCATAGTTATTCTAT+AGG - chr6_2:79958990-79959009 None:intergenic 20.0%
!!! TAAATCAAATTTTGACCTTA+TGG - chr6_2:79959182-79959201 None:intergenic 20.0%
!!! ATTTACTTTTTTCATGTAAC+AGG + chr6_2:79959197-79959216 Msa0930850:intron 20.0%
! TAAAAACCAGTCGTAAAATT+CGG + chr6_2:79957186-79957205 Msa0930850:intron 25.0%
! AAATTGCTCATTTCAAAAGT+GGG - chr6_2:79957424-79957443 None:intergenic 25.0%
!!! ACTTTTGAAATGAGCAATTT+GGG + chr6_2:79957424-79957443 Msa0930850:intron 25.0%
!!! TAATTATTTTGAATGCCTTG+CGG + chr6_2:79957502-79957521 Msa0930850:intron 25.0%
! AGGAATTCAATATTTACCTT+AGG + chr6_2:79958001-79958020 Msa0930850:intron 25.0%
! ATCCATAGCAAAGTAATAAA+GGG - chr6_2:79958058-79958077 None:intergenic 25.0%
!! AATACAGCTATAGAATTTTG+TGG - chr6_2:79958297-79958316 None:intergenic 25.0%
! ACATTCAAAATGGTTGTTAA+CGG - chr6_2:79958543-79958562 None:intergenic 25.0%
! GAGATTAATGACATTCAAAA+TGG - chr6_2:79958553-79958572 None:intergenic 25.0%
! ATGTATATTTGAATCCAGTT+TGG + chr6_2:79958650-79958669 Msa0930850:intron 25.0%
! CATATATTAATCATCCAAAC+TGG - chr6_2:79958667-79958686 None:intergenic 25.0%
! CAGTTTGGATGATTAATATA+TGG + chr6_2:79958665-79958684 Msa0930850:intron 25.0%
!!! TGCGTAAAAATAATGGATTA+TGG - chr6_2:79958937-79958956 None:intergenic 25.0%
! TTCATAGTTATTCTATAGGA+AGG - chr6_2:79958986-79959005 None:intergenic 25.0%
! ATTAGTATTATCTCTTTCAC+CGG + chr6_2:79959050-79959069 Msa0930850:intron 25.0%
!! GCAATTGATATGAAAGTTTT+GGG - chr6_2:79959141-79959160 None:intergenic 25.0%
!! AGCAATTGATATGAAAGTTT+TGG - chr6_2:79959142-79959161 None:intergenic 25.0%
! AGATTCATCATCCATTAATT+TGG - chr6_2:79959430-79959449 None:intergenic 25.0%
!! CTATAATTACAGACTTCTTT+TGG - chr6_2:79959506-79959525 None:intergenic 25.0%
AAAAGTAGAGTAGAGTGAAA+GGG + chr6_2:79956351-79956370 Msa0930850:five_prime_UTR 30.0%
CTGGTTAATATGGTTATAGT+TGG + chr6_2:79956382-79956401 Msa0930850:exon 30.0%
GTTAATATGGTTATAGTTGG+TGG + chr6_2:79956385-79956404 Msa0930850:exon 30.0%
!! TTTCTTTCTAGAGTCTTGTT+TGG - chr6_2:79956812-79956831 None:intergenic 30.0%
GTTGAATAAATTGGACAATG+TGG + chr6_2:79956853-79956872 Msa0930850:intron 30.0%
! TTTGAAGCTTCTTCATGAAA+GGG + chr6_2:79956914-79956933 Msa0930850:CDS 30.0%
TCGGTGTAAATAATGTTAGT+AGG + chr6_2:79957205-79957224 Msa0930850:intron 30.0%
CTCAGTGTCTATTAATTATG+TGG + chr6_2:79957348-79957367 Msa0930850:intron 30.0%
CAAATTGCTCATTTCAAAAG+TGG - chr6_2:79957425-79957444 None:intergenic 30.0%
!!! CACTTTTGAAATGAGCAATT+TGG + chr6_2:79957423-79957442 Msa0930850:intron 30.0%
! TTTATCTCCAAGTGTAGTTT+TGG + chr6_2:79957456-79957475 Msa0930850:intron 30.0%
! TTATCTCCAAGTGTAGTTTT+GGG + chr6_2:79957457-79957476 Msa0930850:intron 30.0%
GCTCAAAATCAAGAAGAAAT+CGG - chr6_2:79957591-79957610 None:intergenic 30.0%
ATGGTAACAAGCAATCAAAT+GGG + chr6_2:79957734-79957753 Msa0930850:CDS 30.0%
GATTACACATGTCAATTAGA+GGG - chr6_2:79957786-79957805 None:intergenic 30.0%
TGATTACACATGTCAATTAG+AGG - chr6_2:79957787-79957806 None:intergenic 30.0%
! CTTTAGATTTTTCTTTGCTG+AGG + chr6_2:79957981-79958000 Msa0930850:intron 30.0%
! TCAATATTTACCTTAGGTTG+TGG + chr6_2:79958007-79958026 Msa0930850:intron 30.0%
CATCCATAGCAAAGTAATAA+AGG - chr6_2:79958059-79958078 None:intergenic 30.0%
! GATCTTTTCCTTCTTGATTA+TGG + chr6_2:79958089-79958108 Msa0930850:CDS 30.0%
TCACAAATCCATAATCAAGA+AGG - chr6_2:79958100-79958119 None:intergenic 30.0%
GTATGTTTGAACACAAATTG+TGG + chr6_2:79958586-79958605 Msa0930850:intron 30.0%
TTAGTATTATCTCTTTCACC+GGG + chr6_2:79959051-79959070 Msa0930850:intron 30.0%
TGAATAAGTTAAGAGGATTC+AGG - chr6_2:79959084-79959103 None:intergenic 30.0%
!!! TATGAAAGTTTTGGGAAGTT+GGG - chr6_2:79959133-79959152 None:intergenic 30.0%
!!! ATATGAAAGTTTTGGGAAGT+TGG - chr6_2:79959134-79959153 None:intergenic 30.0%
AATAATAGAAGGTCGTTTGT+TGG + chr6_2:79959239-79959258 Msa0930850:CDS 30.0%
! TCATCATCCATTAATTTGGT+GGG - chr6_2:79959426-79959445 None:intergenic 30.0%
! TTCATCATCCATTAATTTGG+TGG - chr6_2:79959427-79959446 None:intergenic 30.0%
TGATGAATCTTTATTGAAGC+AGG + chr6_2:79959440-79959459 Msa0930850:CDS 30.0%
GATGAATCTTTATTGAAGCA+GGG + chr6_2:79959441-79959460 Msa0930850:CDS 30.0%
ATGTAATGAAAAACCTCTCA+AGG + chr6_2:79959526-79959545 Msa0930850:CDS 30.0%
! TAAGTGACATTGAACACTTT+TGG + chr6_2:79959642-79959661 Msa0930850:three_prime_UTR 30.0%
!! CTACTCTACTTTTCTTCACT+AGG - chr6_2:79956344-79956363 None:intergenic 35.0%
GAAAAGTAGAGTAGAGTGAA+AGG + chr6_2:79956350-79956369 Msa0930850:five_prime_UTR 35.0%
! GGCATTGAATCTGGTTAATA+TGG + chr6_2:79956372-79956391 Msa0930850:exon 35.0%
!! AATATGGTTATAGTTGGTGG+TGG + chr6_2:79956388-79956407 Msa0930850:exon 35.0%
ATCAAATGGGTAACAAGAGA+AGG + chr6_2:79956523-79956542 Msa0930850:CDS 35.0%
TCGATTCCTCAAATGGTTTA+GGG + chr6_2:79956581-79956600 Msa0930850:CDS 35.0%
CAATTAGGTCAGTACCAATT+GGG - chr6_2:79956627-79956646 None:intergenic 35.0%
! ATTTTACTTACCGGGAACAT+GGG - chr6_2:79956725-79956744 None:intergenic 35.0%
! AATTTTACTTACCGGGAACA+TGG - chr6_2:79956726-79956745 None:intergenic 35.0%
! AGCTGGTAATTTTACTTACC+GGG - chr6_2:79956733-79956752 None:intergenic 35.0%
! GAGCTGGTAATTTTACTTAC+CGG - chr6_2:79956734-79956753 None:intergenic 35.0%
GTCGTCGATGTTGAATAAAT+TGG + chr6_2:79956844-79956863 Msa0930850:intron 35.0%
! GTTTGAAGCTTCTTCATGAA+AGG + chr6_2:79956913-79956932 Msa0930850:CDS 35.0%
! CAAAACTTGGATCTTTTTGG+TGG + chr6_2:79956937-79956956 Msa0930850:CDS 35.0%
! TAGGAAGAGTGTAAGTTTGT+GGG - chr6_2:79956980-79956999 None:intergenic 35.0%
! ATAGGAAGAGTGTAAGTTTG+TGG - chr6_2:79956981-79957000 None:intergenic 35.0%
! ACTCTTCCTATTTTCTTTCC+TGG + chr6_2:79956990-79957009 Msa0930850:CDS 35.0%
! CTCTTCCTATTTTCTTTCCT+GGG + chr6_2:79956991-79957010 Msa0930850:CDS 35.0%
! TCTTCCTATTTTCTTTCCTG+GGG + chr6_2:79956992-79957011 Msa0930850:CDS 35.0%
AACAGTAAGTAAAGTGTACC+TGG - chr6_2:79957055-79957074 None:intergenic 35.0%
! TTTACACCGAATTTTACGAC+TGG - chr6_2:79957195-79957214 None:intergenic 35.0%
AGATAGACAATTGTAGCTTC+TGG - chr6_2:79957330-79957349 None:intergenic 35.0%
ACACTTGGAGATAAACTATG+CGG - chr6_2:79957451-79957470 None:intergenic 35.0%
!! TATCTCCAAGTGTAGTTTTG+GGG + chr6_2:79957458-79957477 Msa0930850:intron 35.0%
AAATTCATGAATCACGAGAC+AGG + chr6_2:79957552-79957571 Msa0930850:intron 35.0%
AAAGTCAAGCATGCATTAGT+CGG + chr6_2:79957613-79957632 Msa0930850:CDS 35.0%
!! TCAAGAGCATTCAAGTTACA+TGG + chr6_2:79957715-79957734 Msa0930850:CDS 35.0%
CATGGTAACAAGCAATCAAA+TGG + chr6_2:79957733-79957752 Msa0930850:CDS 35.0%
TCCAAATGCTAGAATTGTTC+AGG + chr6_2:79957816-79957835 Msa0930850:CDS 35.0%
TCCTGAACAATTCTAGCATT+TGG - chr6_2:79957820-79957839 None:intergenic 35.0%
GACCCTTTATTACTTTGCTA+TGG + chr6_2:79958053-79958072 Msa0930850:CDS 35.0%
TGTATCGAGCTCAAATATGA+TGG + chr6_2:79958140-79958159 Msa0930850:CDS 35.0%
!! CAAATATGATGGTGCTCTTT+TGG + chr6_2:79958151-79958170 Msa0930850:CDS 35.0%
GGTTAATTACGTCCATTGAA+TGG + chr6_2:79958463-79958482 Msa0930850:intron 35.0%
GAATATGTGTGTTTGTGTGT+TGG + chr6_2:79958694-79958713 Msa0930850:intron 35.0%
! TGTTTTCCCTCTGTTCATTA+AGG + chr6_2:79958960-79958979 Msa0930850:intron 35.0%
TAGTATTATCTCTTTCACCG+GGG + chr6_2:79959052-79959071 Msa0930850:intron 35.0%
CAAGGGTTGAATAAGTTAAG+AGG - chr6_2:79959091-79959110 None:intergenic 35.0%
CTCTTAACTTATTCAACCCT+TGG + chr6_2:79959089-79959108 Msa0930850:intron 35.0%
ATGTTAGCACAAGAACCATA+AGG + chr6_2:79959164-79959183 Msa0930850:intron 35.0%
CTAAAGACTTAAGTGTGTTG+AGG - chr6_2:79959317-79959336 None:intergenic 35.0%
ACTTAAGTCTTTAGATGCTG+AGG + chr6_2:79959323-79959342 Msa0930850:CDS 35.0%
ACACTTTCCCACCAAATTAA+TGG + chr6_2:79959416-79959435 Msa0930850:CDS 35.0%
! CTTTTGGATTCTGAACTGAA+TGG - chr6_2:79959490-79959509 None:intergenic 35.0%
AATGAAAAACCTCTCAAGGA+AGG + chr6_2:79959530-79959549 Msa0930850:CDS 35.0%
GGTAAAGCTTCTTTCATCAA+AGG + chr6_2:79959551-79959570 Msa0930850:CDS 35.0%
!! TTATAGTTGGTGGTGGTAGT+TGG + chr6_2:79956395-79956414 Msa0930850:CDS 40.0%
ATCCACACGATCTCATCAAA+TGG + chr6_2:79956509-79956528 Msa0930850:CDS 40.0%
TCCACACGATCTCATCAAAT+GGG + chr6_2:79956510-79956529 Msa0930850:CDS 40.0%
AAATGGGTAACAAGAGAAGG+TGG + chr6_2:79956526-79956545 Msa0930850:CDS 40.0%
CTCGATTCCTCAAATGGTTT+AGG + chr6_2:79956580-79956599 Msa0930850:CDS 40.0%
CACTAACCCTAAACCATTTG+AGG - chr6_2:79956590-79956609 None:intergenic 40.0%
! CTCAAATGGTTTAGGGTTAG+TGG + chr6_2:79956588-79956607 Msa0930850:CDS 40.0%
GCTAAGGAAGATATCCCAAT+TGG + chr6_2:79956610-79956629 Msa0930850:CDS 40.0%
GCAATTAGGTCAGTACCAAT+TGG - chr6_2:79956628-79956647 None:intergenic 40.0%
TGTGTTGAGGAAGAGCAATT+AGG - chr6_2:79956642-79956661 None:intergenic 40.0%
GAACATGGGAGGTTAATTGA+AGG - chr6_2:79956711-79956730 None:intergenic 40.0%
CATTCATGAGCTAATTGAGC+TGG - chr6_2:79956750-79956769 None:intergenic 40.0%
TTGGACAATGTGGTAGCATT+TGG + chr6_2:79956863-79956882 Msa0930850:intron 40.0%
AGCATTTGGCAGATGAATTG+TGG + chr6_2:79956877-79956896 Msa0930850:intron 40.0%
GCATTTGGCAGATGAATTGT+GGG + chr6_2:79956878-79956897 Msa0930850:intron 40.0%
CTTCATGAAAGGGCAAAACT+TGG + chr6_2:79956924-79956943 Msa0930850:CDS 40.0%
! GGGCAAAACTTGGATCTTTT+TGG + chr6_2:79956934-79956953 Msa0930850:CDS 40.0%
TGTGGGAGATTACTGATGTA+TGG - chr6_2:79956963-79956982 None:intergenic 40.0%
TCTTCCCCAGGAAAGAAAAT+AGG - chr6_2:79956999-79957018 None:intergenic 40.0%
AAATTCTTGATGTCTTCCCC+AGG - chr6_2:79957011-79957030 None:intergenic 40.0%
AAGTGTACCTGGTGAAGAAT+AGG - chr6_2:79957044-79957063 None:intergenic 40.0%
ACAATTGTAGCTTCTGGTGT+TGG - chr6_2:79957324-79957343 None:intergenic 40.0%
! GAGATGAAGCATCTACTTCT+TGG - chr6_2:79957669-79957688 None:intergenic 40.0%
GAAGTAGATGCTTCATCTCT+TGG + chr6_2:79957670-79957689 Msa0930850:CDS 40.0%
TAGATGCTTCATCTCTTGGA+TGG + chr6_2:79957674-79957693 Msa0930850:CDS 40.0%
AGATGCTTCATCTCTTGGAT+GGG + chr6_2:79957675-79957694 Msa0930850:CDS 40.0%
!! TCAATTAGAGGGAGCATCAT+GGG - chr6_2:79957775-79957794 None:intergenic 40.0%
ATTGTTCAGGAACAAGAAGC+CGG + chr6_2:79957829-79957848 Msa0930850:CDS 40.0%
TGAGCTCGATACAGTCATAA+GGG - chr6_2:79958133-79958152 None:intergenic 40.0%
TTGAGCTCGATACAGTCATA+AGG - chr6_2:79958134-79958153 None:intergenic 40.0%
! ATTTGGTGAAGAAACTCCAG+CGG - chr6_2:79958192-79958211 None:intergenic 40.0%
GATAGAATAAGTTCCTGCCA+TGG - chr6_2:79958230-79958249 None:intergenic 40.0%
CTATCTCAGCTAAATCTAGC+TGG + chr6_2:79958245-79958264 Msa0930850:CDS 40.0%
GTTAGCGCTGTTAAAGTATG+TGG + chr6_2:79958442-79958461 Msa0930850:intron 40.0%
GCTTACTGTACTTTGCAGAA+AGG + chr6_2:79958875-79958894 Msa0930850:intron 40.0%
TTCATGTAACAGGTGAGCTT+AGG + chr6_2:79959207-79959226 Msa0930850:intron 40.0%
GGTGGGCAAGAAATAATAGA+AGG + chr6_2:79959228-79959247 Msa0930850:CDS 40.0%
AGTACTCCTTGCAAGTGATA+TGG + chr6_2:79959272-79959291 Msa0930850:CDS 40.0%
TCAAGGTACGAAATACAGCA+AGG - chr6_2:79959371-79959390 None:intergenic 40.0%
AATGACACACAGAGCAATCA+AGG - chr6_2:79959388-79959407 None:intergenic 40.0%
GCTTCTTTCATCAAAGGAGA+CGG + chr6_2:79959557-79959576 Msa0930850:CDS 40.0%
!! GAGTGAAAGGGCATTGAATC+TGG + chr6_2:79956363-79956382 Msa0930850:five_prime_UTR 45.0%
!! TGGTGGTGGTAGTTGGAAAA+CGG + chr6_2:79956402-79956421 Msa0930850:CDS 45.0%
GATGAAGATGCGCATGTTAG+TGG - chr6_2:79956463-79956482 None:intergenic 45.0%
TTGATGAGATCGTGTGGATG+AGG - chr6_2:79956508-79956527 None:intergenic 45.0%
ACCCATTTGATGAGATCGTG+TGG - chr6_2:79956514-79956533 None:intergenic 45.0%
GTTGTGCTATCTTCACAGCA+CGG - chr6_2:79956561-79956580 None:intergenic 45.0%
GCACAACTCGATTCCTCAAA+TGG + chr6_2:79956574-79956593 Msa0930850:CDS 45.0%
! TGGTTTAGGGTTAGTGGCTA+AGG + chr6_2:79956594-79956613 Msa0930850:CDS 45.0%
AAGTGCAGAGGAATGTGTTG+AGG - chr6_2:79956655-79956674 None:intergenic 45.0%
TCATCATCGTTGAAGTGCAG+AGG - chr6_2:79956667-79956686 None:intergenic 45.0%
CATGGGAGGTTAATTGAAGG+AGG - chr6_2:79956708-79956727 None:intergenic 45.0%
CAATTAACCTCCCATGTTCC+CGG + chr6_2:79956712-79956731 Msa0930850:CDS 45.0%
TGAATTGTGGGCAATGAAGC+TGG + chr6_2:79956890-79956909 Msa0930850:CDS 45.0%
GAATTGTGGGCAATGAAGCT+GGG + chr6_2:79956891-79956910 Msa0930850:CDS 45.0%
CTATGCTCCTATTCTTCACC+AGG + chr6_2:79957034-79957053 Msa0930850:CDS 45.0%
ATATGCACTGCAGTGAAGAG+AGG - chr6_2:79957130-79957149 None:intergenic 45.0%
ACATTGCTCTTGTGAGGACT+GGG - chr6_2:79957245-79957264 None:intergenic 45.0%
AGTTGCACATTGCTCTTGTG+AGG - chr6_2:79957251-79957270 None:intergenic 45.0%
!! CTGGTGTTGGTCACAAATGT+TGG - chr6_2:79957311-79957330 None:intergenic 45.0%
TGACACCCCAAAACTACACT+TGG - chr6_2:79957466-79957485 None:intergenic 45.0%
ACACCAGATATGCATCCGTT+TGG + chr6_2:79957640-79957659 Msa0930850:CDS 45.0%
TCTACTTCTTGGCCACCAAA+CGG - chr6_2:79957658-79957677 None:intergenic 45.0%
!! GTCAATTAGAGGGAGCATCA+TGG - chr6_2:79957776-79957795 None:intergenic 45.0%
TAGCACAAAGATGTGGGTGA+AGG + chr6_2:79957852-79957871 Msa0930850:CDS 45.0%
TGTGGCTGAGAAAGCAATCA+AGG + chr6_2:79958025-79958044 Msa0930850:CDS 45.0%
GGAGCAGGTGTAGAGAAATT+TGG - chr6_2:79958209-79958228 None:intergenic 45.0%
ATTTCTCTACACCTGCTCCA+TGG + chr6_2:79958210-79958229 Msa0930850:CDS 45.0%
TGGAGAAACTCCAGATCTCA+AGG + chr6_2:79958265-79958284 Msa0930850:CDS 45.0%
GTGGAAGATACCTTGAGATC+TGG - chr6_2:79958278-79958297 None:intergenic 45.0%
GGAAGGCCTTAATGAACAGA+GGG - chr6_2:79958969-79958988 None:intergenic 45.0%
AGGAAGGCCTTAATGAACAG+AGG - chr6_2:79958970-79958989 None:intergenic 45.0%
!! GCACAACTGATTTGAGCCAA+GGG - chr6_2:79959108-79959127 None:intergenic 45.0%
!! AGCACAACTGATTTGAGCCA+AGG - chr6_2:79959109-79959128 None:intergenic 45.0%
ATGTAACAGGTGAGCTTAGG+TGG + chr6_2:79959210-79959229 Msa0930850:intron 45.0%
TGTAACAGGTGAGCTTAGGT+GGG + chr6_2:79959211-79959230 Msa0930850:intron 45.0%
CACTTGCCATATCACTTGCA+AGG - chr6_2:79959281-79959300 None:intergenic 45.0%
AGGTCATTTGCAACACCAAG+AGG - chr6_2:79959351-79959370 None:intergenic 45.0%
! TTATTGAAGCAGGGTGCTTC+AGG + chr6_2:79959450-79959469 Msa0930850:CDS 45.0%
GAAGCTTTACCTTCCTTGAG+AGG - chr6_2:79959542-79959561 None:intergenic 45.0%
!! ATAAATATAAATATAACAAA+TGG + chr6_2:79958489-79958508 Msa0930850:intron 5.0%
TTACTTACCGGGAACATGGG+AGG - chr6_2:79956722-79956741 None:intergenic 50.0%
CACATTGCTCTTGTGAGGAC+TGG - chr6_2:79957246-79957265 None:intergenic 50.0%
TGCCTTGCGGATTTGCAGTT+TGG + chr6_2:79957515-79957534 Msa0930850:intron 50.0%
TGCCAAACTGCAAATCCGCA+AGG - chr6_2:79957520-79957539 None:intergenic 50.0%
CCACCAAACGGATGCATATC+TGG - chr6_2:79957646-79957665 None:intergenic 50.0%
CCAGATATGCATCCGTTTGG+TGG + chr6_2:79957643-79957662 Msa0930850:CDS 50.0%
AAGCCGGTAGCACAAAGATG+TGG + chr6_2:79957845-79957864 Msa0930850:CDS 50.0%
AGCCGGTAGCACAAAGATGT+GGG + chr6_2:79957846-79957865 Msa0930850:CDS 50.0%
CACCCACATCTTTGTGCTAC+CGG - chr6_2:79957851-79957870 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTCT+GGG - chr6_2:79957914-79957933 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTC+TGG - chr6_2:79957915-79957934 None:intergenic 50.0%
GCTTTCTCAGCCACAACCTA+AGG - chr6_2:79958020-79958039 None:intergenic 50.0%
! TCTTTTGGATGCTGCGAGCA+TGG + chr6_2:79958166-79958185 Msa0930850:CDS 50.0%
ATAAGTTCCTGCCATGGAGC+AGG - chr6_2:79958224-79958243 None:intergenic 50.0%
! GAGGATTCAGGTTCAAACCC+CGG - chr6_2:79959072-79959091 None:intergenic 50.0%
TTAGATGCTGAGGCTCCTCT+TGG + chr6_2:79959333-79959352 Msa0930850:CDS 50.0%
! GCTCTGTGTGTCATTGCACT+AGG + chr6_2:79959393-79959412 Msa0930850:CDS 50.0%
AAGGAGACGGTCACTACTGA+AGG + chr6_2:79959570-79959589 Msa0930850:CDS 50.0%
GTCTGGGAGAGGAGTCATGA+AGG - chr6_2:79957898-79957917 None:intergenic 55.0%
TGTGTGTGTGTGTCTGGGAG+AGG - chr6_2:79957909-79957928 None:intergenic 55.0%
CTCTACACCTGCTCCATGGC+AGG + chr6_2:79958214-79958233 Msa0930850:CDS 60.0%
GATGCTGCGAGCATGGCCGC+TGG + chr6_2:79958173-79958192 Msa0930850:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79956322 79959735 79956322 ID=Msa0930850;Name=Msa0930850
chr6_2 mRNA 79956322 79959735 79956322 ID=Msa0930850-mRNA-1;Parent=Msa0930850;Name=Msa0930850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|5|139|483
chr6_2 exon 79956322 79956733 79956322 ID=Msa0930850-mRNA-1:exon:13893;Parent=Msa0930850-mRNA-1
chr6_2 exon 79956889 79957055 79956889 ID=Msa0930850-mRNA-1:exon:13894;Parent=Msa0930850-mRNA-1
chr6_2 exon 79957574 79957873 79957574 ID=Msa0930850-mRNA-1:exon:13895;Parent=Msa0930850-mRNA-1
chr6_2 exon 79958023 79958286 79958023 ID=Msa0930850-mRNA-1:exon:13896;Parent=Msa0930850-mRNA-1
chr6_2 exon 79959219 79959735 79959219 ID=Msa0930850-mRNA-1:exon:13897;Parent=Msa0930850-mRNA-1
chr6_2 five_prime_UTR 79956322 79956390 79956322 ID=Msa0930850-mRNA-1:five_prime_utr;Parent=Msa0930850-mRNA-1
chr6_2 CDS 79956391 79956733 79956391 ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2 CDS 79956889 79957055 79956889 ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2 CDS 79957574 79957873 79957574 ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2 CDS 79958023 79958286 79958023 ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2 CDS 79959219 79959596 79959219 ID=Msa0930850-mRNA-1:cds;Parent=Msa0930850-mRNA-1
chr6_2 three_prime_UTR 79959597 79959735 79959597 ID=Msa0930850-mRNA-1:three_prime_utr;Parent=Msa0930850-mRNA-1
Gene Sequence

>Msa0930850

ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGCGCATCTTCATCTTCATCATCATCACGAGTAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATAGCACAACTCGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTCTGCACTTCAACGATGATGATCGCAACTCTCACTCTCTCCTCCTTCAATTAACCTCCCATGTTCCCGATGAATTGTGGGCAATGAAGCTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCACTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATATGCATCCGTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTTTCATCAAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAGCCGGTAGCACAAAGATGTGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAGGAAGATGACCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCCGCTGGAGTTTCTTCACCAAATTTCTCTACACCTGCTCCATGGCAGGAACTTATTCTATCTCAGCTAAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGGCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCAAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTAGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGACGGTCACTACTGAAGGCTAA

Protein sequence

>Msa0930850

MVIVGGGSWKTAMLMSSSLSHVRPLTCASSSSSSSRVAPHPHDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNDDDRNSHSLLLQLTSHVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDMHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMWVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLDAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTTEG*