AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172820 MtrunA17_Chr1g0192381 83.764 271 34 3 1 269 3 265 1.34e-152 426
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172820 AT3G05625.1 63.218 261 82 6 12 267 2 253 3.44e-113 326
Msa0172820 AT3G05625.2 60.204 196 64 6 12 202 2 188 8.50e-74 224

Find 83 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCCTTCCTTCTGTTTC+CGG 0.124019 1_4:-58045430 Msa0172820:CDS
TTCACTGTCTTTGCCGAAAT+TGG 0.138782 1_4:-58043002 Msa0172820:CDS
TTCCTTCTGTTTCCGGCATC+TGG 0.151607 1_4:-58045423 Msa0172820:CDS
AGGTAGTGGTGGTGGGTTTA+AGG 0.199019 1_4:+58045557 None:intergenic
TCGTCAATATCAATTGAATT+TGG 0.230249 1_4:-58045150 Msa0172820:CDS
CATTTGTTAGGGTGATGTTT+TGG 0.230806 1_4:-58045253 Msa0172820:intron
GGTTTAAGGTTGTGGATAAT+TGG 0.241491 1_4:+58045571 None:intergenic
GCTGCTTGCAAATCTCCTTA+TGG 0.251539 1_4:-58043156 Msa0172820:CDS
ATTGAATTTGGAATTGGAAT+TGG 0.276732 1_4:-58045138 Msa0172820:CDS
ATGCAGGTCTGATGATTATA+TGG 0.301057 1_4:-58043040 Msa0172820:intron
CTGTGTGAAGCTCAACTATA+TGG 0.307850 1_4:-58044021 Msa0172820:CDS
TTCAGCTGAAGTTCCAATTT+CGG 0.309631 1_4:+58042989 None:intergenic
GGAGAGTAAGGTAGTGGTGG+TGG 0.312943 1_4:+58045549 None:intergenic
GGAAACATATAACATGTTTA+AGG 0.318035 1_4:-58043847 Msa0172820:CDS
ATAATCGCTTTCTCTGCTAT+TGG 0.320277 1_4:+58043647 None:intergenic
ATATCAATTGAATTTGGAAT+TGG 0.323162 1_4:-58045144 Msa0172820:CDS
TTAGATGAGTGAACTACATT+AGG 0.328037 1_4:-58042777 Msa0172820:three_prime_UTR
GATTTACCCGTGTAGCTTGT+AGG 0.333350 1_4:-58043678 Msa0172820:intron
CTGCTTGCAAATCTCCTTAT+GGG 0.339629 1_4:-58043155 Msa0172820:CDS
ATGGACTCTTCCGTATCATT+TGG 0.341909 1_4:+58044054 None:intergenic
TGGTGGTGGGTTTAAGGTTG+TGG 0.360687 1_4:+58045563 None:intergenic
AAGAAGGAGCTGAGCAGTTT+CGG 0.373836 1_4:-58044095 Msa0172820:CDS
GTTTGATAAAGCAATTGAAT+TGG 0.379643 1_4:-58045217 Msa0172820:CDS
AATTGCAAGAAGGGCTTCAT+TGG 0.387452 1_4:+58045366 None:intergenic
AGTCTTCGAGAGAGATTTGA+AGG 0.396830 1_4:+58045451 None:intergenic
AATTGATATTGACGAAAGTT+CGG 0.400065 1_4:+58045158 None:intergenic
AAATCAAACCTTTGCCCATA+AGG 0.405834 1_4:+58043141 None:intergenic
TCCTTCTGTTTCCGGCATCT+GGG 0.413953 1_4:-58045422 Msa0172820:CDS
TGAAGGATTGGAGCAAAAGA+TGG 0.433606 1_4:+58045468 None:intergenic
TGAATATTAGTTGACTGTAC+TGG 0.442168 1_4:-58042848 Msa0172820:three_prime_UTR
GTTTCCCTCATGACAGGCCT+TGG 0.443161 1_4:+58043864 None:intergenic
GGCATCTGGGACGCCATCAC+CGG 0.445468 1_4:-58045409 Msa0172820:CDS
GACGCCATCACCGGCGGCAG+CGG 0.446702 1_4:-58045400 Msa0172820:CDS
TCGAGAGAGATTTGAAGGAT+TGG 0.454213 1_4:+58045456 None:intergenic
GAGAGTAAGGTAGTGGTGGT+GGG 0.471942 1_4:+58045550 None:intergenic
TTATCTGGAAGACTGGTTGA+TGG 0.477062 1_4:+58042735 None:intergenic
ATTGCCGCTGCCGCCGGTGA+TGG 0.479013 1_4:+58045396 None:intergenic
GGTAACAAGCATCGTAGCCC+AGG 0.480158 1_4:+58045635 None:intergenic
TTTATGCTTCGCTATATGCT+GGG 0.488456 1_4:-58043623 Msa0172820:CDS
TGGGCTTTATTACGAATCTC+AGG 0.491384 1_4:-58043604 Msa0172820:intron
GGTGATGGCGTCCCAGATGC+CGG 0.498720 1_4:+58045411 None:intergenic
GTTGTTATTGCCGCTGCCGC+CGG 0.501222 1_4:+58045390 None:intergenic
ATAAACATTATCTGGAAGAC+TGG 0.502377 1_4:+58042728 None:intergenic
GAAGGATTGGAGCAAAAGAT+GGG 0.507555 1_4:+58045469 None:intergenic
TGAATTGGATCCTCGTCAAA+AGG 0.513209 1_4:-58045202 Msa0172820:CDS
ATGATACGGAAGAGTCCATA+TGG 0.514782 1_4:-58044050 Msa0172820:CDS
TTATATGTTTCCCTCATGAC+AGG 0.514876 1_4:+58043858 None:intergenic
AAAATTAAGTAAAATGATGA+AGG 0.521273 1_4:+58042882 None:intergenic
TTATATGGCTTCTCTTTCCA+AGG 0.521826 1_4:-58043025 Msa0172820:CDS
GCAAATCTCCTTATGGGCAA+AGG 0.522193 1_4:-58043149 Msa0172820:intron
TATAACATGTTTAAGGATGG+TGG 0.523328 1_4:-58043840 Msa0172820:CDS
TCCTCGTCGAATTGCAAGAA+GGG 0.524837 1_4:+58045357 None:intergenic
TGGGAATGGTGAAGAAAGGA+AGG 0.526224 1_4:+58045525 None:intergenic
TTCACACAGAAAACACCATA+TGG 0.527292 1_4:+58044035 None:intergenic
ATAACATGTTTAAGGATGGT+GGG 0.535247 1_4:-58043839 Msa0172820:CDS
TGCTCAAAATCCAAATGATA+CGG 0.539447 1_4:-58044064 Msa0172820:CDS
GGATGGTGGGGATCCTGAAA+AGG 0.539874 1_4:-58043826 Msa0172820:intron
AAGGTTGTGGATAATTGGCA+TGG 0.556289 1_4:+58045576 None:intergenic
GTAACAAGCATCGTAGCCCA+GGG 0.570672 1_4:+58045636 None:intergenic
TCGGCAAAGACAGTGAACCT+TGG 0.571507 1_4:+58043008 None:intergenic
ATCTGGGACGCCATCACCGG+CGG 0.572114 1_4:-58045406 Msa0172820:CDS
GGAATGGTGAAGAAAGGAAG+GGG 0.575992 1_4:+58045527 None:intergenic
TACATTACAGTCTAAAGAGA+TGG 0.581754 1_4:-58042925 Msa0172820:three_prime_UTR
TCCCAGATGCCGGAAACAGA+AGG 0.582501 1_4:+58045421 None:intergenic
ACATATAACATGTTTAAGGA+TGG 0.584854 1_4:-58043843 Msa0172820:CDS
GATAATTGGCATGGACATAG+TGG 0.585166 1_4:+58045585 None:intergenic
ATGATGGGAATGGTGAAGAA+AGG 0.586825 1_4:+58045521 None:intergenic
TTCCTCGTCGAATTGCAAGA+AGG 0.589113 1_4:+58045356 None:intergenic
TAACATGTTTAAGGATGGTG+GGG 0.591570 1_4:-58043838 Msa0172820:CDS
TTTAGGTTGGCAGAGATCCA+AGG 0.592463 1_4:-58043881 Msa0172820:intron
AGGAATGTCTCTCTTCAGAC+AGG 0.594107 1_4:-58045338 Msa0172820:intron
GAGATCCAAGGCCTGTCATG+AGG 0.597114 1_4:-58043869 Msa0172820:CDS
GGGAATGGTGAAGAAAGGAA+GGG 0.615047 1_4:+58045526 None:intergenic
GGATTGGAGCAAAAGATGGG+TGG 0.615577 1_4:+58045472 None:intergenic
AGCAAGAAAGCGATATCTTG+AGG 0.633760 1_4:-58043989 Msa0172820:intron
AGATCCAAGGCCTGTCATGA+GGG 0.634537 1_4:-58043868 Msa0172820:CDS
AGATGCCGGAAACAGAAGGA+AGG 0.639435 1_4:+58045425 None:intergenic
GAATGGTGAAGAAAGGAAGG+GGG 0.644780 1_4:+58045528 None:intergenic
ATCCTCGTCAAAAGGCGTGT+AGG 0.656501 1_4:-58045194 Msa0172820:CDS
GCCCTTCTTGCAATTCGACG+AGG 0.664402 1_4:-58045358 Msa0172820:CDS
GCATGGACATAGTGGAAGCG+CGG 0.666843 1_4:+58045593 None:intergenic
TGAAGCTCAACTATATGGTG+TGG 0.677146 1_4:-58044016 Msa0172820:CDS
TAACAAGCATCGTAGCCCAG+GGG 0.715576 1_4:+58045637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATGAAATTTACAA+AGG + chr1_4:58044589-58044608 None:intergenic 10.0%
!! TTGAAATGAATTAAAAAAGT+TGG + chr1_4:58043689-58043708 None:intergenic 15.0%
!!! AAGTACATTTTGTTTAATAA+GGG - chr1_4:58043968-58043987 Msa0172820:intron 15.0%
!! TCTGAATATATTATAACAAA+AGG - chr1_4:58044188-58044207 Msa0172820:intron 15.0%
!!! TATTATAAAAAGCATTCATT+TGG + chr1_4:58044238-58044257 None:intergenic 15.0%
!! AGATTATATATACATCATAT+TGG - chr1_4:58044865-58044884 Msa0172820:intron 15.0%
!!! TATACTTTATTGTTACTTTT+TGG - chr1_4:58044994-58045013 Msa0172820:intron 15.0%
!! AAAATTAAGTAAAATGATGA+AGG + chr1_4:58045496-58045515 None:intergenic 15.0%
!!! GGATTTAATTATTTTATGTG+GGG + chr1_4:58042764-58042783 None:intergenic 20.0%
!!! CGGATTTAATTATTTTATGT+GGG + chr1_4:58042765-58042784 None:intergenic 20.0%
!! CAGTATCAAAATATCTTTAA+TGG - chr1_4:58043077-58043096 Msa0172820:intron 20.0%
!!! ATATCAATTGAATTTGGAAT+TGG - chr1_4:58043231-58043250 Msa0172820:intron 20.0%
!! ATACAAGCTTAATCTAAATT+AGG - chr1_4:58043564-58043583 Msa0172820:intron 20.0%
!! GAAAGAATATATTCTGATAA+TGG - chr1_4:58043800-58043819 Msa0172820:intron 20.0%
!!! CAAGTACATTTTGTTTAATA+AGG - chr1_4:58043967-58043986 Msa0172820:intron 20.0%
!! TTAACTTTCTTGATGAATTT+AGG - chr1_4:58044477-58044496 Msa0172820:intron 20.0%
!! TAATACACAATATTTCAGTT+TGG + chr1_4:58045057-58045076 None:intergenic 20.0%
!!! CATCATTTTACTTAATTTTG+TGG - chr1_4:58045497-58045516 Msa0172820:CDS 20.0%
!!! GCGGATTTAATTATTTTATG+TGG + chr1_4:58042766-58042785 None:intergenic 25.0%
! GTTTGATAAAGCAATTGAAT+TGG - chr1_4:58043158-58043177 Msa0172820:CDS 25.0%
! AATTGATATTGACGAAAGTT+CGG + chr1_4:58043220-58043239 None:intergenic 25.0%
! TCGTCAATATCAATTGAATT+TGG - chr1_4:58043225-58043244 Msa0172820:intron 25.0%
!! ATTGAATTTGGAATTGGAAT+TGG - chr1_4:58043237-58043256 Msa0172820:intron 25.0%
! TTATAGCTTCTACAAAATCA+CGG + chr1_4:58043490-58043509 None:intergenic 25.0%
! ATTTAGATTAAGCTTGTATG+TGG + chr1_4:58043563-58043582 None:intergenic 25.0%
!!! GTCTGTATTTTTAAGAAGAA+AGG + chr1_4:58043719-58043738 None:intergenic 25.0%
!!! ACAATTTTGTGTCATTAGTT+AGG + chr1_4:58043767-58043786 None:intergenic 25.0%
! ACTAATGACACAAAATTGTA+TGG - chr1_4:58043768-58043787 Msa0172820:intron 25.0%
!!! AGAATATATTCTGATAATGG+TGG - chr1_4:58043803-58043822 Msa0172820:intron 25.0%
!! TTTTTCCATAGATTTGAAGA+AGG - chr1_4:58044264-58044283 Msa0172820:intron 25.0%
!!! ATTGTCATGTTCTTTTTTCA+CGG + chr1_4:58044445-58044464 None:intergenic 25.0%
! GGAAACATATAACATGTTTA+AGG - chr1_4:58044528-58044547 Msa0172820:intron 25.0%
! ACATATAACATGTTTAAGGA+TGG - chr1_4:58044532-58044551 Msa0172820:intron 25.0%
! ACTGCATTTAAATTGTGAAA+GGG + chr1_4:58044618-58044637 None:intergenic 25.0%
! AACTGCATTTAAATTGTGAA+AGG + chr1_4:58044619-58044638 None:intergenic 25.0%
! TATCAGATTGCATTTCATAA+AGG + chr1_4:58044668-58044687 None:intergenic 25.0%
! TAGTAAGGAAAGAAAAATGT+TGG + chr1_4:58044811-58044830 None:intergenic 25.0%
! ATGATGATGATGATGATGAT+GGG + chr1_4:58042872-58042891 None:intergenic 30.0%
! TAACTAGTGCTCATTTGTTA+GGG - chr1_4:58043111-58043130 Msa0172820:intron 30.0%
!! ATTTGTTAGGGTGATGTTTT+GGG - chr1_4:58043123-58043142 Msa0172820:intron 30.0%
ACGAAACATACACACTAATT+TGG + chr1_4:58043427-58043446 None:intergenic 30.0%
CGATACTTCAATGATAGTAT+TGG - chr1_4:58043596-58043615 Msa0172820:intron 30.0%
!! TATGTTGCTATTTGTGTGTT+TGG - chr1_4:58043834-58043853 Msa0172820:CDS 30.0%
! TATTTGTGTGTTTGGAATCA+TGG - chr1_4:58043842-58043861 Msa0172820:CDS 30.0%
AGAAGCTTCATGTTAATATG+TGG - chr1_4:58043884-58043903 Msa0172820:intron 30.0%
GAAGCTTCATGTTAATATGT+GGG - chr1_4:58043885-58043904 Msa0172820:intron 30.0%
AAGCTTCATGTTAATATGTG+GGG - chr1_4:58043886-58043905 Msa0172820:intron 30.0%
!! ACAAACTTGTTAATGTACCT+TGG - chr1_4:58044049-58044068 Msa0172820:CDS 30.0%
CATAAGATATGAAATAGCCA+AGG + chr1_4:58044069-58044088 None:intergenic 30.0%
TAGTACAATACGACATGTAT+AGG + chr1_4:58044112-58044131 None:intergenic 30.0%
TGCTCAAAATCCAAATGATA+CGG - chr1_4:58044311-58044330 Msa0172820:intron 30.0%
!!! TTGTCATGTTCTTTTTTCAC+GGG + chr1_4:58044444-58044463 None:intergenic 30.0%
CTTTCTTGATGAATTTAGGT+TGG - chr1_4:58044481-58044500 Msa0172820:intron 30.0%
TATAACATGTTTAAGGATGG+TGG - chr1_4:58044535-58044554 Msa0172820:intron 30.0%
ATAACATGTTTAAGGATGGT+GGG - chr1_4:58044536-58044555 Msa0172820:intron 30.0%
! TTGCATTTCATAAAGGCATA+AGG + chr1_4:58044661-58044680 None:intergenic 30.0%
AGTAACTGGTATAGTTAGTA+AGG + chr1_4:58044826-58044845 None:intergenic 30.0%
ATCTCTTAAGATGTCAAGAT+TGG + chr1_4:58044849-58044868 None:intergenic 30.0%
TGTGTATACATGCATTTGAT+TGG + chr1_4:58044931-58044950 None:intergenic 30.0%
CAAATGCATGTATACACAAA+TGG - chr1_4:58044933-58044952 Msa0172820:intron 30.0%
! AGCATCATTTTCATTCTATG+CGG + chr1_4:58045181-58045200 None:intergenic 30.0%
TACATTACAGTCTAAAGAGA+TGG - chr1_4:58045450-58045469 Msa0172820:CDS 30.0%
TGAATATTAGTTGACTGTAC+TGG - chr1_4:58045527-58045546 Msa0172820:CDS 30.0%
TTAGATGAGTGAACTACATT+AGG - chr1_4:58045598-58045617 Msa0172820:exon 30.0%
! GGTTTAAGGTTGTGGATAAT+TGG + chr1_4:58042807-58042826 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr1_4:58042873-58042892 None:intergenic 35.0%
CTAACTAGTGCTCATTTGTT+AGG - chr1_4:58043110-58043129 Msa0172820:intron 35.0%
!! CATTTGTTAGGGTGATGTTT+TGG - chr1_4:58043122-58043141 Msa0172820:intron 35.0%
! TTTGTTAGGGTGATGTTTTG+GGG - chr1_4:58043124-58043143 Msa0172820:intron 35.0%
AATACCAGATCTTTGGCAAA+GGG - chr1_4:58043283-58043302 Msa0172820:intron 35.0%
TCTCACTTTACTACTTGGAT+AGG - chr1_4:58043309-58043328 Msa0172820:intron 35.0%
CAGAAAAATAAAAGCAGGTG+AGG + chr1_4:58043343-58043362 None:intergenic 35.0%
!!! CACCTGCTTTTATTTTTCTG+TGG - chr1_4:58043343-58043362 Msa0172820:intron 35.0%
AGCCACAGAAAAATAAAAGC+AGG + chr1_4:58043348-58043367 None:intergenic 35.0%
!!! TGCTTTTATTTTTCTGTGGC+TGG - chr1_4:58043347-58043366 Msa0172820:intron 35.0%
AGTGTGTATGTTTCGTATCA+CGG - chr1_4:58043431-58043450 Msa0172820:intron 35.0%
GTATGTCAGAATCACAATCA+CGG - chr1_4:58043457-58043476 Msa0172820:intron 35.0%
TAGATATGTTCGAATCACGT+TGG + chr1_4:58043532-58043551 None:intergenic 35.0%
TAAGCTTGTATGTGGTATCA+CGG + chr1_4:58043555-58043574 None:intergenic 35.0%
AACACGTACGTACTTGATAT+CGG - chr1_4:58043624-58043643 Msa0172820:CDS 35.0%
GATACTTTCTGAGTACACAT+TGG + chr1_4:58043667-58043686 None:intergenic 35.0%
CATGTTAATATGTGGGGAAA+AGG - chr1_4:58043892-58043911 Msa0172820:intron 35.0%
GTGATCATAACAAGTAGAGT+AGG + chr1_4:58043948-58043967 None:intergenic 35.0%
GTCGTATTGTACTATGTATG+CGG - chr1_4:58044118-58044137 Msa0172820:intron 35.0%
TCGTATTGTACTATGTATGC+GGG - chr1_4:58044119-58044138 Msa0172820:intron 35.0%
TTCACACAGAAAACACCATA+TGG + chr1_4:58044343-58044362 None:intergenic 35.0%
TTATATGTTTCCCTCATGAC+AGG + chr1_4:58044520-58044539 None:intergenic 35.0%
TAACATGTTTAAGGATGGTG+GGG - chr1_4:58044537-58044556 Msa0172820:intron 35.0%
! ATTATTGAGCACACCTTTTC+AGG + chr1_4:58044565-58044584 None:intergenic 35.0%
ATAATCGCTTTCTCTGCTAT+TGG + chr1_4:58044731-58044750 None:intergenic 35.0%
! TTTTATGCTTCGCTATATGC+TGG - chr1_4:58044751-58044770 Msa0172820:intron 35.0%
TTTATGCTTCGCTATATGCT+GGG - chr1_4:58044752-58044771 Msa0172820:intron 35.0%
AGTTACAAAGCTGAAGAAAG+TGG - chr1_4:58045030-58045049 Msa0172820:intron 35.0%
! GCATCATTTTCATTCTATGC+GGG + chr1_4:58045180-58045199 None:intergenic 35.0%
AAATCAAACCTTTGCCCATA+AGG + chr1_4:58045237-58045256 None:intergenic 35.0%
ATGCAGGTCTGATGATTATA+TGG - chr1_4:58045335-58045354 Msa0172820:intron 35.0%
TTATATGGCTTCTCTTTCCA+AGG - chr1_4:58045350-58045369 Msa0172820:CDS 35.0%
TTCAGCTGAAGTTCCAATTT+CGG + chr1_4:58045389-58045408 None:intergenic 35.0%
GATAATTGGCATGGACATAG+TGG + chr1_4:58042793-58042812 None:intergenic 40.0%
AAGGTTGTGGATAATTGGCA+TGG + chr1_4:58042802-58042821 None:intergenic 40.0%
! ATGATGGGAATGGTGAAGAA+AGG + chr1_4:58042857-58042876 None:intergenic 40.0%
!! GATGATGATGATGATGGGAA+TGG + chr1_4:58042867-58042886 None:intergenic 40.0%
GAAGGATTGGAGCAAAAGAT+GGG + chr1_4:58042909-58042928 None:intergenic 40.0%
TGAAGGATTGGAGCAAAAGA+TGG + chr1_4:58042910-58042929 None:intergenic 40.0%
TCGAGAGAGATTTGAAGGAT+TGG + chr1_4:58042922-58042941 None:intergenic 40.0%
AGTCTTCGAGAGAGATTTGA+AGG + chr1_4:58042927-58042946 None:intergenic 40.0%
AATTGCAAGAAGGGCTTCAT+TGG + chr1_4:58043012-58043031 None:intergenic 40.0%
TGAATTGGATCCTCGTCAAA+AGG - chr1_4:58043173-58043192 Msa0172820:CDS 40.0%
GAGTTCCAATACCAGATCTT+TGG - chr1_4:58043276-58043295 Msa0172820:intron 40.0%
CTTTGCCAAAGATCTGGTAT+TGG + chr1_4:58043284-58043303 None:intergenic 40.0%
CAATACCAGATCTTTGGCAA+AGG - chr1_4:58043282-58043301 Msa0172820:intron 40.0%
ATACCAGATCTTTGGCAAAG+GGG - chr1_4:58043284-58043303 Msa0172820:intron 40.0%
!! TTTTTCTGTGGCTGGTTATG+TGG - chr1_4:58043355-58043374 Msa0172820:intron 40.0%
!! TTTTCTGTGGCTGGTTATGT+GGG - chr1_4:58043356-58043375 Msa0172820:intron 40.0%
AGCTTCTACAAAATCACGGT+TGG + chr1_4:58043486-58043505 None:intergenic 40.0%
CAGCTCCTTCTTCAAATCTA+TGG + chr1_4:58044272-58044291 None:intergenic 40.0%
ATGGACTCTTCCGTATCATT+TGG + chr1_4:58044324-58044343 None:intergenic 40.0%
ATGATACGGAAGAGTCCATA+TGG - chr1_4:58044325-58044344 Msa0172820:intron 40.0%
CTGTGTGAAGCTCAACTATA+TGG - chr1_4:58044354-58044373 Msa0172820:intron 40.0%
TGAAGCTCAACTATATGGTG+TGG - chr1_4:58044359-58044378 Msa0172820:intron 40.0%
AGCAAGAAAGCGATATCTTG+AGG - chr1_4:58044386-58044405 Msa0172820:intron 40.0%
!! TGGGCTTTATTACGAATCTC+AGG - chr1_4:58044771-58044790 Msa0172820:intron 40.0%
GATGTCAAGATTGGAGTAAC+TGG + chr1_4:58044840-58044859 None:intergenic 40.0%
CTGCTTGCAAATCTCCTTAT+GGG - chr1_4:58045220-58045239 Msa0172820:CDS 40.0%
TTCACTGTCTTTGCCGAAAT+TGG - chr1_4:58045373-58045392 Msa0172820:CDS 40.0%
GAATGGTGAAGAAAGGAAGG+GGG + chr1_4:58042850-58042869 None:intergenic 45.0%
GGAATGGTGAAGAAAGGAAG+GGG + chr1_4:58042851-58042870 None:intergenic 45.0%
GGGAATGGTGAAGAAAGGAA+GGG + chr1_4:58042852-58042871 None:intergenic 45.0%
TGGGAATGGTGAAGAAAGGA+AGG + chr1_4:58042853-58042872 None:intergenic 45.0%
CTCTTCCTTCCTTCTGTTTC+CGG - chr1_4:58042945-58042964 Msa0172820:three_prime_UTR 45.0%
TCCTCGTCGAATTGCAAGAA+GGG + chr1_4:58043021-58043040 None:intergenic 45.0%
TTCCTCGTCGAATTGCAAGA+AGG + chr1_4:58043022-58043041 None:intergenic 45.0%
AGGAATGTCTCTCTTCAGAC+AGG - chr1_4:58043037-58043056 Msa0172820:CDS 45.0%
!!! TGATGTTTTGGGGTCTGTTG+TGG - chr1_4:58043134-58043153 Msa0172820:intron 45.0%
GGGTCTCTCACTTTACTACT+TGG - chr1_4:58043304-58043323 Msa0172820:intron 45.0%
ATGCGGGCTTCTTAGAAGTT+AGG - chr1_4:58044135-58044154 Msa0172820:intron 45.0%
AAGAAGGAGCTGAGCAGTTT+CGG - chr1_4:58044280-58044299 Msa0172820:intron 45.0%
!! TTTAGGTTGGCAGAGATCCA+AGG - chr1_4:58044494-58044513 Msa0172820:intron 45.0%
! GATTTACCCGTGTAGCTTGT+AGG - chr1_4:58044697-58044716 Msa0172820:intron 45.0%
AATGCACCTACAAGCTACAC+GGG + chr1_4:58044706-58044725 None:intergenic 45.0%
GAATGCACCTACAAGCTACA+CGG + chr1_4:58044707-58044726 None:intergenic 45.0%
TACACAAATGGCGACACTCA+TGG - chr1_4:58044945-58044964 Msa0172820:intron 45.0%
GCTGCTTGCAAATCTCCTTA+TGG - chr1_4:58045219-58045238 Msa0172820:CDS 45.0%
GCAAATCTCCTTATGGGCAA+AGG - chr1_4:58045226-58045245 Msa0172820:CDS 45.0%
GCACATGCATTCTTTGATGC+AGG - chr1_4:58045319-58045338 Msa0172820:intron 45.0%
! GTAACAAGCATCGTAGCCCA+GGG + chr1_4:58042742-58042761 None:intergenic 50.0%
!! TGGTGGTGGGTTTAAGGTTG+TGG + chr1_4:58042815-58042834 None:intergenic 50.0%
!! AGGTAGTGGTGGTGGGTTTA+AGG + chr1_4:58042821-58042840 None:intergenic 50.0%
! GAGAGTAAGGTAGTGGTGGT+GGG + chr1_4:58042828-58042847 None:intergenic 50.0%
AGAAAGGAAGGGGGAGAGTA+AGG + chr1_4:58042841-58042860 None:intergenic 50.0%
GGATTGGAGCAAAAGATGGG+TGG + chr1_4:58042906-58042925 None:intergenic 50.0%
AGATGCCGGAAACAGAAGGA+AGG + chr1_4:58042953-58042972 None:intergenic 50.0%
TTCCTTCTGTTTCCGGCATC+TGG - chr1_4:58042952-58042971 Msa0172820:three_prime_UTR 50.0%
TCCTTCTGTTTCCGGCATCT+GGG - chr1_4:58042953-58042972 Msa0172820:three_prime_UTR 50.0%
! ATCCTCGTCAAAAGGCGTGT+AGG - chr1_4:58043181-58043200 Msa0172820:CDS 50.0%
! AACCTACACGCCTTTTGACG+AGG + chr1_4:58043186-58043205 None:intergenic 50.0%
AGACCCCTTTGCCAAAGATC+TGG + chr1_4:58043290-58043309 None:intergenic 50.0%
AGATCCAAGGCCTGTCATGA+GGG - chr1_4:58044507-58044526 Msa0172820:intron 50.0%
TCGGCAAAGACAGTGAACCT+TGG + chr1_4:58045370-58045389 None:intergenic 50.0%
! GGTAACAAGCATCGTAGCCC+AGG + chr1_4:58042743-58042762 None:intergenic 55.0%
! GCATGGACATAGTGGAAGCG+CGG + chr1_4:58042785-58042804 None:intergenic 55.0%
! GGAGAGTAAGGTAGTGGTGG+TGG + chr1_4:58042829-58042848 None:intergenic 55.0%
GAAGGGGGAGAGTAAGGTAG+TGG + chr1_4:58042835-58042854 None:intergenic 55.0%
TCCCAGATGCCGGAAACAGA+AGG + chr1_4:58042957-58042976 None:intergenic 55.0%
GCCCTTCTTGCAATTCGACG+AGG - chr1_4:58043017-58043036 Msa0172820:CDS 55.0%
GAGATCCAAGGCCTGTCATG+AGG - chr1_4:58044506-58044525 Msa0172820:intron 55.0%
GTTTCCCTCATGACAGGCCT+TGG + chr1_4:58044514-58044533 None:intergenic 55.0%
!! GGATGGTGGGGATCCTGAAA+AGG - chr1_4:58044549-58044568 Msa0172820:intron 55.0%
! GGGGGAGAGTAAGGTAGTGG+TGG + chr1_4:58042832-58042851 None:intergenic 60.0%
! GTTGTTATTGCCGCTGCCGC+CGG + chr1_4:58042988-58043007 None:intergenic 60.0%
! GGTGATGGCGTCCCAGATGC+CGG + chr1_4:58042967-58042986 None:intergenic 65.0%
! GGCATCTGGGACGCCATCAC+CGG - chr1_4:58042966-58042985 Msa0172820:three_prime_UTR 65.0%
! ATCTGGGACGCCATCACCGG+CGG - chr1_4:58042969-58042988 Msa0172820:three_prime_UTR 65.0%
ATTGCCGCTGCCGCCGGTGA+TGG + chr1_4:58042982-58043001 None:intergenic 70.0%
GACGCCATCACCGGCGGCAG+CGG - chr1_4:58042975-58042994 Msa0172820:exon 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58042739 58045658 58042739 ID=Msa0172820;Name=Msa0172820
chr1_4 mRNA 58042739 58045658 58042739 ID=Msa0172820-mRNA-1;Parent=Msa0172820;Name=Msa0172820-mRNA-1;_AED=0.21;_eAED=0.21;_QI=56|0.83|0.85|1|1|1|7|251|269
chr1_4 exon 58042739 58043056 58042739 ID=Msa0172820-mRNA-1:exon:17865;Parent=Msa0172820-mRNA-1
chr1_4 exon 58043150 58043211 58043150 ID=Msa0172820-mRNA-1:exon:17864;Parent=Msa0172820-mRNA-1
chr1_4 exon 58043605 58043685 58043605 ID=Msa0172820-mRNA-1:exon:17863;Parent=Msa0172820-mRNA-1
chr1_4 exon 58043827 58043898 58043827 ID=Msa0172820-mRNA-1:exon:17862;Parent=Msa0172820-mRNA-1
chr1_4 exon 58043990 58044122 58043990 ID=Msa0172820-mRNA-1:exon:17861;Parent=Msa0172820-mRNA-1
chr1_4 exon 58045135 58045265 58045135 ID=Msa0172820-mRNA-1:exon:17860;Parent=Msa0172820-mRNA-1
chr1_4 exon 58045339 58045658 58045339 ID=Msa0172820-mRNA-1:exon:17859;Parent=Msa0172820-mRNA-1
chr1_4 five_prime_UTR 58045603 58045658 58045603 ID=Msa0172820-mRNA-1:five_prime_utr;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58045339 58045602 58045339 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58045135 58045265 58045135 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58043990 58044122 58043990 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58043827 58043898 58043827 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58043605 58043685 58043605 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58043150 58043211 58043150 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 CDS 58042990 58043056 58042990 ID=Msa0172820-mRNA-1:cds;Parent=Msa0172820-mRNA-1
chr1_4 three_prime_UTR 58042739 58042989 58042739 ID=Msa0172820-mRNA-1:three_prime_utr;Parent=Msa0172820-mRNA-1
Gene Sequence

>Msa0172820

ATGTCCATGCCAATTATCCACAACCTTAAACCCACCACCACTACCTTACTCTCCCCCTTCCTTTCTTCACCATTCCCATCATCATCATCATCATCATCATCTTTCAAACCACCCATCTTTTGCTCCAATCCTTCAAATCTCTCTCGAAGACTCTTCCTTCCTTCTGTTTCCGGCATCTGGGACGCCATCACCGGCGGCAGCGGCAATAACAACACCAATGAAGCCCTTCTTGCAATTCGACGAGGAATGTCTCTCTTCAGACAGGGTGATGTTTTGGGGTCTGTTGTGGAGTTTGATAAAGCAATTGAATTGGATCCTCGTCAAAAGGCGTGTAGGTTTATTCGTTTTTCCGAACTTTCGTCAATATCAATTGAATTTGGAATTGGAATTGGAATATTTGAAGAAGGAGCTGAGCAGTTTCGGTTAGACGTTGCTCAAAATCCAAATGATACGGAAGAGTCCATATGGTGTTTTCTGTGTGAAGCTCAACTATATGGTGTGGATGAAGCAAGAAAGCGATATCTTGAGGTTGGCAGAGATCCAAGGCCTGTCATGAGGGAAACATATAACATGTTTAAGGATGGTGGGGATCCTGAAAAGCTTGTAGGTGCATTCTCCAATAGCAGAGAAAGCGATTATTTTTATGCTTCGCTATATGCTGGGCTTTATTACGAATCTCAGAATGAAAATGATGCTGCAAAAGTTCATATAGTTGCTGCTTGCAAATCTCCTTATGGGCAAAGGTCTGATGATTATATGGCTTCTCTTTCCAAGGTTCACTGTCTTTGCCGAAATTGGAACTTCAGCTGA

Protein sequence

>Msa0172820

MSMPIIHNLKPTTTTLLSPFLSSPFPSSSSSSSSFKPPIFCSNPSNLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGDVLGSVVEFDKAIELDPRQKACRFIRFSELSSISIEFGIGIGIFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKRYLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNENDAAKVHIVAACKSPYGQRSDDYMASLSKVHCLCRNWNFS*