AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315760 MtrunA17_Chr2g0287211 94.393 428 5 1 1 409 1 428 0.0 829
Msa0315760 MtrunA17_Chr2g0287181 90.654 428 21 1 1 409 1 428 0.0 801
Msa0315760 MtrunA17_Chr6g0479141 73.596 356 75 1 57 393 1 356 0.0 562
Msa0315760 MtrunA17_Chr3g0110261 73.876 356 74 1 57 393 1 356 0.0 561
Msa0315760 MtrunA17_Chr5g0434471 70.255 353 86 1 60 393 5 357 0.0 535
Msa0315760 MtrunA17_Chr8g0364341 83.636 55 9 0 289 343 9 63 1.67e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315760 AT5G35630.3 77.494 431 74 4 1 409 1 430 0.0 687
Msa0315760 AT5G35630.2 77.494 431 74 4 1 409 1 430 0.0 687
Msa0315760 AT5G35630.1 77.494 431 74 4 1 409 1 430 0.0 687
Msa0315760 AT5G37600.1 74.438 356 72 1 57 393 1 356 0.0 566
Msa0315760 AT5G16570.1 74.438 356 72 1 57 393 1 356 0.0 564
Msa0315760 AT1G66200.1 75.000 356 70 1 57 393 1 356 0.0 563
Msa0315760 AT1G66200.3 73.151 365 70 2 57 393 1 365 0.0 556
Msa0315760 AT3G17820.1 71.955 353 80 1 57 390 1 353 0.0 543
Msa0315760 AT1G48470.1 70.414 338 81 1 72 390 16 353 0.0 519
Msa0315760 AT1G66200.2 72.222 252 51 1 57 289 1 252 1.22e-133 384
Msa0315760 AT5G16570.2 70.293 239 52 1 57 276 1 239 1.60e-123 358

Find 145 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCTTGGTGCTCTTTA+AGG 0.126003 2_4:-12323819 Msa0315760:five_prime_UTR
GCAGAACATGGCACAGATTT+TGG 0.155664 2_4:-12322527 Msa0315760:intron
GGTTGAGGATTTACTTAATT+TGG 0.180473 2_4:-12322344 Msa0315760:CDS
CCGCGGTGGTAACAACATTT+TGG 0.220354 2_4:-12321588 Msa0315760:intron
CTCACCTTTGCCATTCTTCT+CGG 0.229339 2_4:+12319767 None:intergenic
TTGAAGCTGGTGATCATATC+TGG 0.250556 2_4:-12320600 Msa0315760:CDS
TATAGTACCTCAATTGGTTT+TGG 0.258095 2_4:+12320312 None:intergenic
AAGCTGACTGATTTCTTTGT+AGG 0.266537 2_4:+12319146 None:intergenic
ATATGTGGTGACAGCCTTAT+TGG 0.284085 2_4:-12319494 Msa0315760:CDS
CACAACTCTCACACTCTATA+TGG 0.285360 2_4:-12323723 Msa0315760:five_prime_UTR
AGTCTAAATCTATTGATTAA+TGG 0.290344 2_4:-12319401 Msa0315760:exon
GCCCCGGCGGCGCAGTAATA+AGG 0.290627 2_4:+12321024 None:intergenic
GCTTTATGTCTCTTATTTGT+AGG 0.306213 2_4:+12321437 None:intergenic
CTTCTCTTGGTGCTCTTTAA+GGG 0.310657 2_4:-12323818 Msa0315760:five_prime_UTR
ATCAAAGATGTGGAGTTCTT+TGG 0.311844 2_4:-12322443 Msa0315760:CDS
TGCTGCAGTTTGTGAGGTGC+TGG 0.317755 2_4:-12319369 Msa0315760:three_prime_UTR
TTCACCGAGGACATTTATAA+TGG 0.329802 2_4:-12319092 Msa0315760:three_prime_UTR
TATATTATGAAGATATTGTT+TGG 0.331941 2_4:-12319316 Msa0315760:three_prime_UTR
CATAATATAATAAATCTAAA+TGG 0.338711 2_4:+12319330 None:intergenic
AGCTCAGAGGGATGCTCAAC+AGG 0.340393 2_4:+12321798 None:intergenic
AAAGCTGCAAACTTTGGAAA+TGG 0.342244 2_4:+12323664 None:intergenic
CAGGATGTCACACCAATTAC+AGG 0.343535 2_4:-12320200 Msa0315760:intron
GGAATTTCAGCCTCAACCTT+TGG 0.352234 2_4:+12321395 None:intergenic
TGGCCTGTTGGTGGCTATCC+TGG 0.366008 2_4:-12321152 Msa0315760:CDS
TAATGTACTCTCTGCCAATA+AGG 0.366195 2_4:+12319480 None:intergenic
TTTCACATCTGTTTGAAGTA+AGG 0.375190 2_4:+12321187 None:intergenic
TCAACTCTGGCACCATCAAC+AGG 0.381942 2_4:-12322366 Msa0315760:CDS
GAATTTCAGCCTCAACCTTT+GGG 0.391287 2_4:+12321396 None:intergenic
AATAAGGCTGTCACCACATA+TGG 0.395016 2_4:+12319496 None:intergenic
TGTCTTGATTGCAGGTTACT+TGG 0.398318 2_4:-12319548 Msa0315760:intron
TAAATCCTCAACCCTGTTGA+TGG 0.404683 2_4:+12322354 None:intergenic
GGAAATGAGAGAAGGTTGAC+AGG 0.416285 2_4:-12319979 Msa0315760:CDS
GGTCCTTATTACTGCGCCGC+CGG 0.416746 2_4:-12321027 Msa0315760:CDS
CTTGTCTGACATTGTGTAGA+AGG 0.424180 2_4:+12322502 None:intergenic
ACAGATGTGAAATGGCCATT+AGG 0.428436 2_4:-12321176 Msa0315760:CDS
GTCCTTATTACTGCGCCGCC+GGG 0.429665 2_4:-12321026 Msa0315760:CDS
ATGCTCAACAGGCTTTGATA+TGG 0.434596 2_4:+12321809 None:intergenic
GTGAGAGTTGTGTAAAATAA+AGG 0.435343 2_4:+12323734 None:intergenic
GTGATCATATCTGGGCTTCA+AGG 0.435881 2_4:-12320591 Msa0315760:CDS
GCATAATTGCTGAGTACATC+TGG 0.436205 2_4:-12322300 Msa0315760:intron
GAGGGAAGATGGAGGGTTTG+AGG 0.436712 2_4:-12320067 Msa0315760:CDS
TGAAACAGGATTGGTGGAAC+AGG 0.436884 2_4:-12321947 Msa0315760:intron
AAGCTGCAAACTTTGGAAAT+GGG 0.438166 2_4:+12323665 None:intergenic
TACTTCAAACAGATGTGAAA+TGG 0.440857 2_4:-12321184 Msa0315760:CDS
GCCGGGGCAGATAAGTCATT+TGG 0.440872 2_4:-12321009 Msa0315760:CDS
TACAAGGCTTGCTTATATGC+TGG 0.449645 2_4:-12320964 Msa0315760:CDS
ACAAAGAGCATGAGGGAAGA+TGG 0.452148 2_4:-12320078 Msa0315760:CDS
CTTTATGTCTCTTATTTGTA+GGG 0.456048 2_4:+12321438 None:intergenic
TGTGTAAAATAAAGGTTGGT+TGG 0.457964 2_4:+12323742 None:intergenic
AAGCACTATAGTACCTCAAT+TGG 0.459753 2_4:+12320306 None:intergenic
TTTAACCTTGACAGGGCGAT+TGG 0.463470 2_4:-12320230 Msa0315760:intron
TGTCTCTTATTTGTAGGGAT+AGG 0.465641 2_4:+12321443 None:intergenic
TTATAAGTCCAAGCTTCTCT+TGG 0.474113 2_4:-12323831 Msa0315760:five_prime_UTR
GCAATTATGCTGTCAGTGAA+TGG 0.479383 2_4:+12322313 None:intergenic
GGCAGAGAGTACATTATTGT+GGG 0.479550 2_4:-12319473 Msa0315760:CDS
CCACCAACAGGCCAACCTAA+TGG 0.483275 2_4:+12321161 None:intergenic
CTTCCTAAGTGGAACTATGA+TGG 0.483826 2_4:-12321777 Msa0315760:CDS
CAATGTGAACCTTGTGGCGA+AGG 0.487159 2_4:+12320016 None:intergenic
AAGGTTCACATTGAAGCATA+TGG 0.487181 2_4:-12320006 Msa0315760:CDS
GGCTGTGTTTGCATGTGGTA+TGG 0.491287 2_4:-12319238 Msa0315760:three_prime_UTR
TTGCAGGTTACTTGGAAGAC+AGG 0.494206 2_4:-12319540 Msa0315760:intron
TGGTGGCTATCCTGGTCCTC+AGG 0.500616 2_4:-12321144 Msa0315760:intron
CCATTAGGTTGGCCTGTTGG+TGG 0.503990 2_4:-12321161 Msa0315760:CDS
GGACCAGGATAGCCACCAAC+AGG 0.504091 2_4:+12321149 None:intergenic
TGGCTATTCTAATAACGATA+GGG 0.506183 2_4:+12323762 None:intergenic
CAGGCGTCCGGCTTCAAACA+TGG 0.506417 2_4:-12319521 Msa0315760:CDS
TGGCAGAGAGTACATTATTG+TGG 0.507952 2_4:-12319474 Msa0315760:CDS
AGAGTAATGGCAATCAACTC+TGG 0.512452 2_4:-12322379 Msa0315760:CDS
TTCTGCTAAATTCAGAGTAA+TGG 0.515964 2_4:-12322392 Msa0315760:CDS
TTGGCTATTCTAATAACGAT+AGG 0.524575 2_4:+12323761 None:intergenic
CTTCAGTAACCCAAAGGTTG+AGG 0.530081 2_4:-12321405 Msa0315760:CDS
GCTGCAGTTTGTGAGGTGCT+GGG 0.533336 2_4:-12319368 Msa0315760:three_prime_UTR
GGAAGAGACACCGAGAAGAA+TGG 0.536053 2_4:-12319777 Msa0315760:CDS
CTCCACATCTTTGATGAGAT+CGG 0.538614 2_4:+12322451 None:intergenic
CCTTGACAGGGCGATTGGAA+TGG 0.539038 2_4:-12320225 Msa0315760:intron
TGATGAGATCGGAGTTGCAA+GGG 0.539695 2_4:+12322462 None:intergenic
TTACTTGGAAGACAGGCGTC+CGG 0.542791 2_4:-12319533 Msa0315760:CDS
TCTCGGTGTCTCTTCCCACA+CGG 0.544625 2_4:+12319784 None:intergenic
GAACCTTTCCCTTCGCCACA+AGG 0.547634 2_4:-12320025 Msa0315760:CDS
TTGAATAGCTTCTCTTTCTG+AGG 0.548315 2_4:+12319118 None:intergenic
TGGCACCATCAACAGGGTTG+AGG 0.550831 2_4:-12322359 Msa0315760:CDS
GGATCTTTGAAAATTGCTTG+AGG 0.551311 2_4:+12321614 None:intergenic
TCTAGCACTGGACAAGCCCC+TGG 0.553808 2_4:-12321753 Msa0315760:CDS
GATCGGAGTTGCAAGGGGAG+AGG 0.554178 2_4:+12322468 None:intergenic
TGAAGCTGGTGATCATATCT+GGG 0.554602 2_4:-12320599 Msa0315760:CDS
TTGATGAGATCGGAGTTGCA+AGG 0.555124 2_4:+12322461 None:intergenic
TATTCCATTATAAATGTCCT+CGG 0.556627 2_4:+12319088 None:intergenic
ATCACTTCACTATCTTCACC+AGG 0.558839 2_4:+12321735 None:intergenic
CACATTGAAGCATATGGAGA+AGG 0.559868 2_4:-12320000 Msa0315760:CDS
AACTATGATGGATCTAGCAC+TGG 0.560911 2_4:-12321765 Msa0315760:CDS
GATCCATCATAGTTCCACTT+AGG 0.563451 2_4:+12321774 None:intergenic
CCTTGATCCAAAACCAATTG+AGG 0.564795 2_4:-12320319 Msa0315760:intron
TATATCTGATGCTCATTACA+AGG 0.567381 2_4:-12320980 Msa0315760:CDS
AGAGCTTCAGCCTCTAGAGT+TGG 0.568683 2_4:+12319448 None:intergenic
AAAGAGCACCAAGAGAAGCT+TGG 0.568886 2_4:+12323823 None:intergenic
TTGTATATCAGATATTTCGT+TGG 0.569347 2_4:-12319259 Msa0315760:three_prime_UTR
TTCAAACATGGATCCATATG+TGG 0.574208 2_4:-12319509 Msa0315760:CDS
AGGGTTTGAGGTAATAAAGA+AGG 0.575169 2_4:-12320055 Msa0315760:CDS
CTCCGATCTCATCAAAGATG+TGG 0.575385 2_4:-12322453 Msa0315760:CDS
GAACCTTGTGGCGAAGGGAA+AGG 0.577024 2_4:+12320022 None:intergenic
TGGCCATTAGGTTGGCCTGT+TGG 0.578206 2_4:-12321164 Msa0315760:CDS
TATGGATCCATGTTTGAAGC+CGG 0.582314 2_4:+12319514 None:intergenic
ATGGAGAAGGAAATGAGAGA+AGG 0.582440 2_4:-12319987 Msa0315760:CDS
ACCAAATGACTTATCTGCCC+CGG 0.584020 2_4:+12321008 None:intergenic
AATGGTATTACCTGAGGACC+AGG 0.584702 2_4:+12321134 None:intergenic
CAGCACTGCTGCAGTTTGTG+AGG 0.584949 2_4:-12319375 Msa0315760:three_prime_UTR
CCAAGAAAATGTGTTGATGC+TGG 0.585913 2_4:+12319942 None:intergenic
ATGTGAAATGGCCATTAGGT+TGG 0.587256 2_4:-12321172 Msa0315760:CDS
AATGTGAACCTTGTGGCGAA+GGG 0.589750 2_4:+12320017 None:intergenic
CAGGGCGATTGGAATGGTGC+AGG 0.596483 2_4:-12320219 Msa0315760:CDS
ATCCCTCTGAGCTTCCTAAG+TGG 0.601311 2_4:-12321788 Msa0315760:CDS
ATGTTGTTACCACCGCGGAA+AGG 0.604039 2_4:+12321593 None:intergenic
TCCTTATTACTGCGCCGCCG+GGG 0.605888 2_4:-12321025 Msa0315760:CDS
GGCTATTCTAATAACGATAG+GGG 0.606029 2_4:+12323763 None:intergenic
CAGAGAATTACTGAACAAGC+TGG 0.610576 2_4:-12320354 Msa0315760:CDS
TTCAAAGATCCTTTCCGCGG+TGG 0.612743 2_4:-12321602 Msa0315760:CDS
TTCCACTTAGGAAGCTCAGA+GGG 0.616333 2_4:+12321786 None:intergenic
GTAGGGATAGGCTCACCTTG+TGG 0.616926 2_4:+12321455 None:intergenic
CCACACGGATTGAGCATCCA+CGG 0.619918 2_4:+12319799 None:intergenic
TCGTTGGCTGTGTTTGCATG+TGG 0.621670 2_4:-12319243 Msa0315760:three_prime_UTR
CCTAGTGTAGGTATTGAAGC+TGG 0.623241 2_4:-12320613 Msa0315760:intron
GATGAGATCGGAGTTGCAAG+GGG 0.624226 2_4:+12322463 None:intergenic
GACACCGAGAAGAATGGCAA+AGG 0.626801 2_4:-12319771 Msa0315760:intron
CTATATGGTTCAGTGACACA+AGG 0.630105 2_4:-12323708 Msa0315760:five_prime_UTR
CGATAGGGGTGTGCTATGAG+TGG 0.630490 2_4:+12323777 None:intergenic
CACTTCACTATCTTCACCAG+GGG 0.632006 2_4:+12321737 None:intergenic
CGTGGATGCTCAATCCGTGT+GGG 0.632481 2_4:-12319798 Msa0315760:CDS
CCGTGGATGCTCAATCCGTG+TGG 0.633763 2_4:-12319799 Msa0315760:CDS
TGAAATCTTCAGTAACCCAA+AGG 0.645974 2_4:-12321411 Msa0315760:CDS
GGCTTCAAGGTACATCCTTG+AGG 0.647096 2_4:-12320578 Msa0315760:intron
AAGAGCATGAGGGAAGATGG+AGG 0.649362 2_4:-12320075 Msa0315760:CDS
AGAGCATGAGGGAAGATGGA+GGG 0.649616 2_4:-12320074 Msa0315760:CDS
TATGCTGGAATTAACATCAG+TGG 0.654120 2_4:-12320949 Msa0315760:intron
CAACTCTGGCACCATCAACA+GGG 0.659254 2_4:-12322365 Msa0315760:CDS
TGCGATGCTTATACACCACA+AGG 0.660080 2_4:-12321470 Msa0315760:CDS
ATTGTGGGAACCAACTCTAG+AGG 0.660710 2_4:-12319458 Msa0315760:CDS
TTTCAGTACAAAGAGCATGA+GGG 0.669238 2_4:-12320085 Msa0315760:intron
ATGCAGGGAGTGGCTAACCG+TGG 0.669725 2_4:-12319816 Msa0315760:intron
GAGTTGTGTAAAATAAAGGT+TGG 0.680782 2_4:+12323738 None:intergenic
TCACTTCACTATCTTCACCA+GGG 0.684268 2_4:+12321736 None:intergenic
AGGTTGAGGCTGAAATTCCG+TGG 0.684939 2_4:-12321391 Msa0315760:intron
AAATGACTTATCTGCCCCGG+CGG 0.706244 2_4:+12321011 None:intergenic
CCAAAATGTTGTTACCACCG+CGG 0.710389 2_4:+12321588 None:intergenic
GTTCCACTTAGGAAGCTCAG+AGG 0.715738 2_4:+12321785 None:intergenic
ATGCTTCAATGTGAACCTTG+TGG 0.722374 2_4:+12320010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTATTTATAATTTGATT+AGG + chr2_4:12320690-12320709 None:intergenic 10.0%
!!! ATTAATTTTACTAATTGTTT+TGG - chr2_4:12322669-12322688 Msa0315760:intron 10.0%
!! ATTTATAATATTTATCAACT+TGG + chr2_4:12322814-12322833 None:intergenic 10.0%
!! CATAATATAATAAATCTAAA+TGG + chr2_4:12323596-12323615 None:intergenic 10.0%
!!! GACTTATAATATTTTAGATA+AGG + chr2_4:12319081-12319100 None:intergenic 15.0%
!!! TAACAAAGAATATTTCTTTT+TGG + chr2_4:12319750-12319769 None:intergenic 15.0%
!!! AAAATGCTTTTATTTATGTT+AGG - chr2_4:12320237-12320256 Msa0315760:intron 15.0%
!! ATTTCATAATATTTGCATTT+CGG + chr2_4:12321401-12321420 None:intergenic 15.0%
!!! TGTTTTATTTCAAATTTCAT+AGG - chr2_4:12321817-12321836 Msa0315760:intron 15.0%
!! TAGTAAAATTAATTAGCATA+AGG + chr2_4:12322662-12322681 None:intergenic 15.0%
!! TATATTATGAAGATATTGTT+TGG - chr2_4:12323607-12323626 Msa0315760:intron 15.0%
!!! AAATCTCAACATTTGATTTT+TGG - chr2_4:12319445-12319464 Msa0315760:CDS 20.0%
!!! TTTAAGTTAAAAATAAAGGG+TGG - chr2_4:12319493-12319512 Msa0315760:CDS 20.0%
!! TTTAGTAGAAATGAAAAACT+TGG - chr2_4:12319658-12319677 Msa0315760:intron 20.0%
!! TTAGTAGAAATGAAAAACTT+GGG - chr2_4:12319659-12319678 Msa0315760:intron 20.0%
!!! TTGAGTGATGATTTATTTTT+TGG - chr2_4:12319816-12319835 Msa0315760:intron 20.0%
!!! AGATATCATCATTTAAGATA+AGG + chr2_4:12320140-12320159 None:intergenic 20.0%
!! TTGGTAAAATTAATAAGGTA+AGG + chr2_4:12321571-12321590 None:intergenic 20.0%
!!! AGTAGTTGGTAAAATTAATA+AGG + chr2_4:12321576-12321595 None:intergenic 20.0%
!!! ATAGAAGATAACTTAACTTT+TGG - chr2_4:12321633-12321652 Msa0315760:intron 20.0%
!! TTGAAATAAAACACAAGAAA+TGG + chr2_4:12321810-12321829 None:intergenic 20.0%
!! AATTAGTGAATTTCAAAATG+TGG - chr2_4:12321840-12321859 Msa0315760:intron 20.0%
!! ATATTCCTTCATATTATATC+AGG - chr2_4:12321874-12321893 Msa0315760:intron 20.0%
!! TATTCCTTCATATTATATCA+GGG - chr2_4:12321875-12321894 Msa0315760:intron 20.0%
!!! AATTTCATTTAACCTACTTT+TGG - chr2_4:12322369-12322388 Msa0315760:CDS 20.0%
!! TCTTATAAAATTGAATATGC+AGG - chr2_4:12323091-12323110 Msa0315760:intron 20.0%
!! CTTATAAAATTGAATATGCA+GGG - chr2_4:12323092-12323111 Msa0315760:intron 20.0%
!!! AATTGTAGACTTTTAATCAA+GGG + chr2_4:12323323-12323342 None:intergenic 20.0%
!!! TAATTGTAGACTTTTAATCA+AGG + chr2_4:12323324-12323343 None:intergenic 20.0%
!!! AGTCTAAATCTATTGATTAA+TGG - chr2_4:12323522-12323541 Msa0315760:intron 20.0%
!! GAATACCATTTTCATTCTTA+TGG - chr2_4:12319327-12319346 Msa0315760:three_prime_UTR 25.0%
! CTTTACCATAAGAATGAAAA+TGG + chr2_4:12319335-12319354 None:intergenic 25.0%
!! TTTCATCATTTAAGTTCTTG+TGG - chr2_4:12319595-12319614 Msa0315760:intron 25.0%
! TTTATTCACTAATCACTATC+AGG + chr2_4:12320009-12320028 None:intergenic 25.0%
! AGTGAATAAAATGTCTTGTA+AGG - chr2_4:12320019-12320038 Msa0315760:CDS 25.0%
! CATTAACATAAGAATGGAAA+TGG + chr2_4:12320716-12320735 None:intergenic 25.0%
! GTAGTACATTAACATAAGAA+TGG + chr2_4:12320722-12320741 None:intergenic 25.0%
! CTTATGTTAATGTACTACAT+AGG - chr2_4:12320724-12320743 Msa0315760:intron 25.0%
!!! TGATACTTTTTTTCTGAAAC+AGG - chr2_4:12320962-12320981 Msa0315760:CDS 25.0%
! ATATAGATCAAACAACAACA+TGG + chr2_4:12321074-12321093 None:intergenic 25.0%
!! AGTAACATGAATAGAAGTAT+CGG + chr2_4:12321235-12321254 None:intergenic 25.0%
!! CTTTATGTCTCTTATTTGTA+GGG + chr2_4:12321488-12321507 None:intergenic 25.0%
! ATATGTGAAAAACCAAAAGT+AGG + chr2_4:12322384-12322403 None:intergenic 25.0%
! TTCAACTATTTAATACAGAG+AGG - chr2_4:12322410-12322429 Msa0315760:CDS 25.0%
! ACATTATCTTAATTCTGTGT+AGG - chr2_4:12322469-12322488 Msa0315760:CDS 25.0%
!!! CAATAATGGTGTCTTTTTTA+AGG - chr2_4:12322501-12322520 Msa0315760:CDS 25.0%
! TATGTCAAAAAACCTGTAAT+TGG + chr2_4:12322738-12322757 None:intergenic 25.0%
! ACAGATATGATTCATAACAA+AGG + chr2_4:12322761-12322780 None:intergenic 25.0%
!! AGACTTTTGCATATAGAAAA+AGG + chr2_4:12323260-12323279 None:intergenic 25.0%
! TTGTATATCAGATATTTCGT+TGG - chr2_4:12323664-12323683 Msa0315760:five_prime_UTR 25.0%
! TATTCCATTATAAATGTCCT+CGG + chr2_4:12323838-12323857 None:intergenic 25.0%
TGGCTATTCTAATAACGATA+GGG + chr2_4:12319164-12319183 None:intergenic 30.0%
TTGGCTATTCTAATAACGAT+AGG + chr2_4:12319165-12319184 None:intergenic 30.0%
! TGTGTAAAATAAAGGTTGGT+TGG + chr2_4:12319184-12319203 None:intergenic 30.0%
GAGTTGTGTAAAATAAAGGT+TGG + chr2_4:12319188-12319207 None:intergenic 30.0%
GTGAGAGTTGTGTAAAATAA+AGG + chr2_4:12319192-12319211 None:intergenic 30.0%
ACCAATACAGAGTTGAAAAA+TGG + chr2_4:12319288-12319307 None:intergenic 30.0%
AAGTTAAAAATAAAGGGTGG+TGG - chr2_4:12319496-12319515 Msa0315760:CDS 30.0%
!! TGAAAAAGTTAGTTCTGCTT+TGG + chr2_4:12319580-12319599 None:intergenic 30.0%
AAAAACTTGGGTCATTGTAA+TGG - chr2_4:12319671-12319690 Msa0315760:intron 30.0%
!! AATCATTCTTGTATTGACTG+AGG - chr2_4:12319910-12319929 Msa0315760:intron 30.0%
GCAAAAATTGTCAAAAACTG+AGG + chr2_4:12320178-12320197 None:intergenic 30.0%
TCATCAGTCAAATTTGAGAA+TGG - chr2_4:12320262-12320281 Msa0315760:intron 30.0%
! ACTTTTTGTTAAGCAGAACA+TGG - chr2_4:12320384-12320403 Msa0315760:intron 30.0%
TTCTGCTAAATTCAGAGTAA+TGG - chr2_4:12320531-12320550 Msa0315760:intron 30.0%
GGTTGAGGATTTACTTAATT+TGG - chr2_4:12320579-12320598 Msa0315760:CDS 30.0%
!!! CTTTTTTTCTGAAACAGGAT+TGG - chr2_4:12320967-12320986 Msa0315760:CDS 30.0%
GGTACACAAATTCTTACTAT+AGG + chr2_4:12321214-12321233 None:intergenic 30.0%
GATCAAAGTTAAATCTGCAA+TGG + chr2_4:12321272-12321291 None:intergenic 30.0%
!! CGAATTATTTTGTTTCACGA+AGG - chr2_4:12321425-12321444 Msa0315760:CDS 30.0%
! GCTTTATGTCTCTTATTTGT+AGG + chr2_4:12321489-12321508 None:intergenic 30.0%
! GTTGTATGTTGATTGTTCAA+AGG - chr2_4:12321691-12321710 Msa0315760:intron 30.0%
! ATGTTGATTGTTCAAAGGTA+TGG - chr2_4:12321696-12321715 Msa0315760:intron 30.0%
! TTTCACATCTGTTTGAAGTA+AGG + chr2_4:12321739-12321758 None:intergenic 30.0%
TACTTCAAACAGATGTGAAA+TGG - chr2_4:12321739-12321758 Msa0315760:CDS 30.0%
TATATCTGATGCTCATTACA+AGG - chr2_4:12321943-12321962 Msa0315760:intron 30.0%
ATCATAACACGTGAAACAAA+AGG + chr2_4:12322045-12322064 None:intergenic 30.0%
! TTCTTTTATGAATCTTGCAG+TGG - chr2_4:12322272-12322291 Msa0315760:intron 30.0%
! TCTTTTATGAATCTTGCAGT+GGG - chr2_4:12322273-12322292 Msa0315760:intron 30.0%
GGTTAAATGAAATTACCTCA+AGG + chr2_4:12322363-12322382 None:intergenic 30.0%
!! TATAGTACCTCAATTGGTTT+TGG + chr2_4:12322614-12322633 None:intergenic 30.0%
!!! TTTTGGTTTTAACCTTGACA+GGG - chr2_4:12322686-12322705 Msa0315760:intron 30.0%
TTACTGTGTTTAACAAGAGT+AGG + chr2_4:12323030-12323049 None:intergenic 30.0%
ATACCAGAAAACTAATTCCA+AGG - chr2_4:12323194-12323213 Msa0315760:intron 30.0%
TATATGCAAAAGTCTACAAG+TGG - chr2_4:12323265-12323284 Msa0315760:intron 30.0%
TTATAAGTCCAAGCTTCTCT+TGG - chr2_4:12319092-12319111 Msa0315760:three_prime_UTR 35.0%
!! GAGTGGATGAAGTTTGTTTT+TGG + chr2_4:12319132-12319151 None:intergenic 35.0%
GGCTATTCTAATAACGATAG+GGG + chr2_4:12319163-12319182 None:intergenic 35.0%
! AAGCTGCAAACTTTGGAAAT+GGG + chr2_4:12319261-12319280 None:intergenic 35.0%
! AAAGCTGCAAACTTTGGAAA+TGG + chr2_4:12319262-12319281 None:intergenic 35.0%
!!! GCCATTTTTCAACTCTGTAT+TGG - chr2_4:12319284-12319303 Msa0315760:three_prime_UTR 35.0%
!! TAAAGGGTGGTGGTTATTTT+TGG - chr2_4:12319506-12319525 Msa0315760:CDS 35.0%
ATCACTCAAGAAAATGTGCA+AGG + chr2_4:12319805-12319824 None:intergenic 35.0%
AATGTGCATCTTATTGAGTG+TGG - chr2_4:12319879-12319898 Msa0315760:intron 35.0%
TCAAATTTGAGAATGGTTGC+TGG - chr2_4:12320269-12320288 Msa0315760:intron 35.0%
ATCAAAGATGTGGAGTTCTT+TGG - chr2_4:12320480-12320499 Msa0315760:intron 35.0%
!! ACACCTTCAAGTTGAATTGT+CGG + chr2_4:12320751-12320770 None:intergenic 35.0%
ACTAGCACATACACAAATAC+TGG + chr2_4:12320900-12320919 None:intergenic 35.0%
!!! TTTTTCTGAAACAGGATTGG+TGG - chr2_4:12320970-12320989 Msa0315760:CDS 35.0%
! GGATCTTTGAAAATTGCTTG+AGG + chr2_4:12321312-12321331 None:intergenic 35.0%
! ATTTTCAAAGATCCTTTCCG+CGG - chr2_4:12321318-12321337 Msa0315760:intron 35.0%
!! GGTAACAACATTTTGGTAAG+TGG - chr2_4:12321342-12321361 Msa0315760:intron 35.0%
! TGTCTCTTATTTGTAGGGAT+AGG + chr2_4:12321483-12321502 None:intergenic 35.0%
TGAAATCTTCAGTAACCCAA+AGG - chr2_4:12321512-12321531 Msa0315760:intron 35.0%
CGAAGCTAGAAAATGAAACT+AGG - chr2_4:12321602-12321621 Msa0315760:CDS 35.0%
ACAAGAAATGGTATTACCTG+AGG + chr2_4:12321798-12321817 None:intergenic 35.0%
AGGACCCTGATATAATATGA+AGG + chr2_4:12321882-12321901 None:intergenic 35.0%
TATGCTGGAATTAACATCAG+TGG - chr2_4:12321974-12321993 Msa0315760:intron 35.0%
ATTAACATCAGTGGTACCAA+TGG - chr2_4:12321983-12322002 Msa0315760:intron 35.0%
GGTACAACAAGAAATTTACC+TGG + chr2_4:12322024-12322043 None:intergenic 35.0%
! CTTAATTCTGTGTAGGCTTT+TGG - chr2_4:12322476-12322495 Msa0315760:CDS 35.0%
!!! GTAGGCTTTTGGTTCAATAA+TGG - chr2_4:12322487-12322506 Msa0315760:CDS 35.0%
TTGTTCAGTAATTCTCTGTC+AGG + chr2_4:12322567-12322586 None:intergenic 35.0%
!!! CTCAATTGGTTTTGGATCAA+GGG + chr2_4:12322606-12322625 None:intergenic 35.0%
AAGCACTATAGTACCTCAAT+TGG + chr2_4:12322620-12322639 None:intergenic 35.0%
!!! GTTTTGGTTTTAACCTTGAC+AGG - chr2_4:12322685-12322704 Msa0315760:intron 35.0%
!! TTTTCAGTACAAAGAGCATG+AGG - chr2_4:12322837-12322856 Msa0315760:intron 35.0%
! TTTCAGTACAAAGAGCATGA+GGG - chr2_4:12322838-12322857 Msa0315760:intron 35.0%
! AGGGTTTGAGGTAATAAAGA+AGG - chr2_4:12322868-12322887 Msa0315760:intron 35.0%
AAGGTTCACATTGAAGCATA+TGG - chr2_4:12322917-12322936 Msa0315760:intron 35.0%
! CAGCATCAACACATTTTCTT+GGG - chr2_4:12322982-12323001 Msa0315760:intron 35.0%
AAGAGTAGGTGTTCAAAGTT+TGG + chr2_4:12323016-12323035 None:intergenic 35.0%
AAAATTGAATATGCAGGGAG+TGG - chr2_4:12323097-12323116 Msa0315760:intron 35.0%
GAAAATTTGAGCGCTAAAAG+CGG + chr2_4:12323220-12323239 None:intergenic 35.0%
TGCAATCAAGACATTAGGAA+AGG + chr2_4:12323368-12323387 None:intergenic 35.0%
TTTCCTAATGTCTTGATTGC+AGG - chr2_4:12323367-12323386 Msa0315760:intron 35.0%
TAACCTGCAATCAAGACATT+AGG + chr2_4:12323373-12323392 None:intergenic 35.0%
TTCAAACATGGATCCATATG+TGG - chr2_4:12323414-12323433 Msa0315760:intron 35.0%
TAATGTACTCTCTGCCAATA+AGG + chr2_4:12323446-12323465 None:intergenic 35.0%
! AAGCTGACTGATTTCTTTGT+AGG + chr2_4:12323780-12323799 None:intergenic 35.0%
TTGAATAGCTTCTCTTTCTG+AGG + chr2_4:12323808-12323827 None:intergenic 35.0%
! AGCTATTCAAATTTTCACCG+AGG - chr2_4:12323818-12323837 Msa0315760:five_prime_UTR 35.0%
TTCACCGAGGACATTTATAA+TGG - chr2_4:12323831-12323850 Msa0315760:five_prime_UTR 35.0%
!! CTTCTCTTGGTGCTCTTTAA+GGG - chr2_4:12319105-12319124 Msa0315760:three_prime_UTR 40.0%
CACAACTCTCACACTCTATA+TGG - chr2_4:12319200-12319219 Msa0315760:three_prime_UTR 40.0%
CTATATGGTTCAGTGACACA+AGG - chr2_4:12319215-12319234 Msa0315760:three_prime_UTR 40.0%
TGGCAAAAAGCTGCAAACTT+TGG + chr2_4:12319268-12319287 None:intergenic 40.0%
CTTGTCTGACATTGTGTAGA+AGG + chr2_4:12320424-12320443 None:intergenic 40.0%
CTCCACATCTTTGATGAGAT+CGG + chr2_4:12320475-12320494 None:intergenic 40.0%
AGAGTAATGGCAATCAACTC+TGG - chr2_4:12320544-12320563 Msa0315760:intron 40.0%
TAAATCCTCAACCCTGTTGA+TGG + chr2_4:12320572-12320591 None:intergenic 40.0%
GCAATTATGCTGTCAGTGAA+TGG + chr2_4:12320613-12320632 None:intergenic 40.0%
GCATAATTGCTGAGTACATC+TGG - chr2_4:12320623-12320642 Msa0315760:intron 40.0%
! ATGCTCAACAGGCTTTGATA+TGG + chr2_4:12321117-12321136 None:intergenic 40.0%
CTTCCTAAGTGGAACTATGA+TGG - chr2_4:12321146-12321165 Msa0315760:CDS 40.0%
GATCCATCATAGTTCCACTT+AGG + chr2_4:12321152-12321171 None:intergenic 40.0%
!! AACTATGATGGATCTAGCAC+TGG - chr2_4:12321158-12321177 Msa0315760:CDS 40.0%
TCACTTCACTATCTTCACCA+GGG + chr2_4:12321190-12321209 None:intergenic 40.0%
ATCACTTCACTATCTTCACC+AGG + chr2_4:12321191-12321210 None:intergenic 40.0%
TGAAAATTGCTTGAGGACTG+TGG + chr2_4:12321305-12321324 None:intergenic 40.0%
GAATTTCAGCCTCAACCTTT+GGG + chr2_4:12321530-12321549 None:intergenic 40.0%
! AAGGAGTGCAATACATACCA+CGG + chr2_4:12321552-12321571 None:intergenic 40.0%
TAGCTTCGAACAACAGTAGT+TGG + chr2_4:12321590-12321609 None:intergenic 40.0%
ACAGATGTGAAATGGCCATT+AGG - chr2_4:12321747-12321766 Msa0315760:CDS 40.0%
ATGTGAAATGGCCATTAGGT+TGG - chr2_4:12321751-12321770 Msa0315760:CDS 40.0%
! TACAAGGCTTGCTTATATGC+TGG - chr2_4:12321959-12321978 Msa0315760:intron 40.0%
AACAAGAAATTTACCTGGCC+AGG + chr2_4:12322019-12322038 None:intergenic 40.0%
CATGACATAAGCACAAGTGT+CGG - chr2_4:12322132-12322151 Msa0315760:intron 40.0%
!! TGAAGACTTCGGTGCTATAT+AGG - chr2_4:12322218-12322237 Msa0315760:intron 40.0%
!! TATCAAGTTGGTCCTAGTGT+AGG - chr2_4:12322298-12322317 Msa0315760:intron 40.0%
TTGAAGCTGGTGATCATATC+TGG - chr2_4:12322323-12322342 Msa0315760:CDS 40.0%
TGAAGCTGGTGATCATATCT+GGG - chr2_4:12322324-12322343 Msa0315760:CDS 40.0%
CAGAGAATTACTGAACAAGC+TGG - chr2_4:12322569-12322588 Msa0315760:intron 40.0%
!!! CCTCAATTGGTTTTGGATCA+AGG + chr2_4:12322607-12322626 None:intergenic 40.0%
CCTTGATCCAAAACCAATTG+AGG - chr2_4:12322604-12322623 Msa0315760:intron 40.0%
ATGCTTCAATGTGAACCTTG+TGG + chr2_4:12322916-12322935 None:intergenic 40.0%
CACATTGAAGCATATGGAGA+AGG - chr2_4:12322923-12322942 Msa0315760:intron 40.0%
ATGGAGAAGGAAATGAGAGA+AGG - chr2_4:12322936-12322955 Msa0315760:intron 40.0%
! CCAAGAAAATGTGTTGATGC+TGG + chr2_4:12322984-12323003 None:intergenic 40.0%
! CCAGCATCAACACATTTTCT+TGG - chr2_4:12322981-12323000 Msa0315760:intron 40.0%
AGGGTTCAAAATTCGAACTC+TGG + chr2_4:12323304-12323323 None:intergenic 40.0%
TGTCTTGATTGCAGGTTACT+TGG - chr2_4:12323375-12323394 Msa0315760:intron 40.0%
! TATGGATCCATGTTTGAAGC+CGG + chr2_4:12323412-12323431 None:intergenic 40.0%
AATAAGGCTGTCACCACATA+TGG + chr2_4:12323430-12323449 None:intergenic 40.0%
! ATATGTGGTGACAGCCTTAT+TGG - chr2_4:12323429-12323448 Msa0315760:intron 40.0%
! TGGCAGAGAGTACATTATTG+TGG - chr2_4:12323449-12323468 Msa0315760:intron 40.0%
! GGCAGAGAGTACATTATTGT+GGG - chr2_4:12323450-12323469 Msa0315760:intron 40.0%
!! AAAGAGCACCAAGAGAAGCT+TGG + chr2_4:12319103-12319122 None:intergenic 45.0%
!! GCTTCTCTTGGTGCTCTTTA+AGG - chr2_4:12319104-12319123 Msa0315760:three_prime_UTR 45.0%
! GCAGAACATGGCACAGATTT+TGG - chr2_4:12320396-12320415 Msa0315760:intron 45.0%
TGATGAGATCGGAGTTGCAA+GGG + chr2_4:12320464-12320483 None:intergenic 45.0%
TTGATGAGATCGGAGTTGCA+AGG + chr2_4:12320465-12320484 None:intergenic 45.0%
CTCCGATCTCATCAAAGATG+TGG - chr2_4:12320470-12320489 Msa0315760:intron 45.0%
GGACCGACAATTCAACTTGA+AGG - chr2_4:12320745-12320764 Msa0315760:intron 45.0%
! TGAAACAGGATTGGTGGAAC+AGG - chr2_4:12320976-12320995 Msa0315760:CDS 45.0%
TTCCACTTAGGAAGCTCAGA+GGG + chr2_4:12321140-12321159 None:intergenic 45.0%
CACTTCACTATCTTCACCAG+GGG + chr2_4:12321189-12321208 None:intergenic 45.0%
AAATTGCTTGAGGACTGTGG+AGG + chr2_4:12321302-12321321 None:intergenic 45.0%
CCAAAATGTTGTTACCACCG+CGG + chr2_4:12321338-12321357 None:intergenic 45.0%
TGCGATGCTTATACACCACA+AGG - chr2_4:12321453-12321472 Msa0315760:CDS 45.0%
CTTCAGTAACCCAAAGGTTG+AGG - chr2_4:12321518-12321537 Msa0315760:intron 45.0%
GGAATTTCAGCCTCAACCTT+TGG + chr2_4:12321531-12321550 None:intergenic 45.0%
AATGGTATTACCTGAGGACC+AGG + chr2_4:12321792-12321811 None:intergenic 45.0%
ACCAAATGACTTATCTGCCC+CGG + chr2_4:12321918-12321937 None:intergenic 45.0%
GTAGATGCAGACATCAGACA+CGG - chr2_4:12322080-12322099 Msa0315760:intron 45.0%
ACATGTGTCAATGCCCAACA+CGG + chr2_4:12322166-12322185 None:intergenic 45.0%
!! TGTTGGGCATTGACACATGT+TGG - chr2_4:12322166-12322185 Msa0315760:intron 45.0%
!! TTCACAATGAAGGCGTCTCT+CGG + chr2_4:12322202-12322221 None:intergenic 45.0%
CGCCTTCATTGTGAAGACTT+CGG - chr2_4:12322207-12322226 Msa0315760:intron 45.0%
CACCGAAGTCTTCACAATGA+AGG + chr2_4:12322212-12322231 None:intergenic 45.0%
!! TTGCAGTGGGAGTATCAAGT+TGG - chr2_4:12322286-12322305 Msa0315760:intron 45.0%
CCAGCTTCAATACCTACACT+AGG + chr2_4:12322313-12322332 None:intergenic 45.0%
!! CCTAGTGTAGGTATTGAAGC+TGG - chr2_4:12322310-12322329 Msa0315760:CDS 45.0%
GTGATCATATCTGGGCTTCA+AGG - chr2_4:12322332-12322351 Msa0315760:CDS 45.0%
TTTAACCTTGACAGGGCGAT+TGG - chr2_4:12322693-12322712 Msa0315760:intron 45.0%
CAGGATGTCACACCAATTAC+AGG - chr2_4:12322723-12322742 Msa0315760:intron 45.0%
! ACAAAGAGCATGAGGGAAGA+TGG - chr2_4:12322845-12322864 Msa0315760:intron 45.0%
AATGTGAACCTTGTGGCGAA+GGG + chr2_4:12322909-12322928 None:intergenic 45.0%
GGAAATGAGAGAAGGTTGAC+AGG - chr2_4:12322944-12322963 Msa0315760:intron 45.0%
CTCACCTTTGCCATTCTTCT+CGG + chr2_4:12323159-12323178 None:intergenic 45.0%
!!! CGGCCTTGGAATTAGTTTTC+TGG + chr2_4:12323200-12323219 None:intergenic 45.0%
TTGCAGGTTACTTGGAAGAC+AGG - chr2_4:12323383-12323402 Msa0315760:intron 45.0%
ATTGTGGGAACCAACTCTAG+AGG - chr2_4:12323465-12323484 Msa0315760:intron 45.0%
!!! TTTTTTTAAGTTAAAAATAA+AGG - chr2_4:12319489-12319508 Msa0315760:CDS 5.0%
!!! TTTTTTAAGTTAAAAATAAA+GGG - chr2_4:12319490-12319509 Msa0315760:CDS 5.0%
GATGAGATCGGAGTTGCAAG+GGG + chr2_4:12320463-12320482 None:intergenic 50.0%
TCAACTCTGGCACCATCAAC+AGG - chr2_4:12320557-12320576 Msa0315760:intron 50.0%
CAACTCTGGCACCATCAACA+GGG - chr2_4:12320558-12320577 Msa0315760:intron 50.0%
ATCCCTCTGAGCTTCCTAAG+TGG - chr2_4:12321135-12321154 Msa0315760:intron 50.0%
GTTCCACTTAGGAAGCTCAG+AGG + chr2_4:12321141-12321160 None:intergenic 50.0%
TTCAAAGATCCTTTCCGCGG+TGG - chr2_4:12321321-12321340 Msa0315760:intron 50.0%
ATGTTGTTACCACCGCGGAA+AGG + chr2_4:12321333-12321352 None:intergenic 50.0%
! CCGCGGTGGTAACAACATTT+TGG - chr2_4:12321335-12321354 Msa0315760:intron 50.0%
AGGTTGAGGCTGAAATTCCG+TGG - chr2_4:12321532-12321551 Msa0315760:intron 50.0%
AAATGACTTATCTGCCCCGG+CGG + chr2_4:12321915-12321934 None:intergenic 50.0%
CATCAGTGGTACCAATGGAG+AGG - chr2_4:12321988-12322007 Msa0315760:intron 50.0%
ACCAATGGAGAGGTTATGCC+TGG - chr2_4:12321998-12322017 Msa0315760:intron 50.0%
GGCTTCAAGGTACATCCTTG+AGG - chr2_4:12322345-12322364 Msa0315760:CDS 50.0%
! AAGAGCATGAGGGAAGATGG+AGG - chr2_4:12322848-12322867 Msa0315760:intron 50.0%
AGAGCATGAGGGAAGATGGA+GGG - chr2_4:12322849-12322868 Msa0315760:intron 50.0%
CAATGTGAACCTTGTGGCGA+AGG + chr2_4:12322910-12322929 None:intergenic 50.0%
GGAAGAGACACCGAGAAGAA+TGG - chr2_4:12323146-12323165 Msa0315760:intron 50.0%
GACACCGAGAAGAATGGCAA+AGG - chr2_4:12323152-12323171 Msa0315760:intron 50.0%
TTACTTGGAAGACAGGCGTC+CGG - chr2_4:12323390-12323409 Msa0315760:intron 50.0%
!! AGAGCTTCAGCCTCTAGAGT+TGG + chr2_4:12323478-12323497 None:intergenic 50.0%
! TCGTTGGCTGTGTTTGCATG+TGG - chr2_4:12323680-12323699 Msa0315760:five_prime_UTR 50.0%
GGCTGTGTTTGCATGTGGTA+TGG - chr2_4:12323685-12323704 Msa0315760:five_prime_UTR 50.0%
! CGATAGGGGTGTGCTATGAG+TGG + chr2_4:12319149-12319168 None:intergenic 55.0%
TGGCACCATCAACAGGGTTG+AGG - chr2_4:12320564-12320583 Msa0315760:intron 55.0%
AGCTCAGAGGGATGCTCAAC+AGG + chr2_4:12321128-12321147 None:intergenic 55.0%
GTAGGGATAGGCTCACCTTG+TGG + chr2_4:12321471-12321490 None:intergenic 55.0%
!! TGGCCATTAGGTTGGCCTGT+TGG - chr2_4:12321759-12321778 Msa0315760:CDS 55.0%
CCACCAACAGGCCAACCTAA+TGG + chr2_4:12321765-12321784 None:intergenic 55.0%
!! CCATTAGGTTGGCCTGTTGG+TGG - chr2_4:12321762-12321781 Msa0315760:CDS 55.0%
GCCGGGGCAGATAAGTCATT+TGG - chr2_4:12321914-12321933 Msa0315760:intron 55.0%
GCCAGGCATAACCTCTCCAT+TGG + chr2_4:12322002-12322021 None:intergenic 55.0%
!! TGTCGGTTTCGTGTCCGTGT+TGG - chr2_4:12322149-12322168 Msa0315760:intron 55.0%
! GTCGGTTTCGTGTCCGTGTT+GGG - chr2_4:12322150-12322169 Msa0315760:intron 55.0%
CCATTCCAATCGCCCTGTCA+AGG + chr2_4:12322701-12322720 None:intergenic 55.0%
CCTTGACAGGGCGATTGGAA+TGG - chr2_4:12322698-12322717 Msa0315760:intron 55.0%
GAGGGAAGATGGAGGGTTTG+AGG - chr2_4:12322856-12322875 Msa0315760:intron 55.0%
GAACCTTTCCCTTCGCCACA+AGG - chr2_4:12322898-12322917 Msa0315760:intron 55.0%
GAACCTTGTGGCGAAGGGAA+AGG + chr2_4:12322904-12322923 None:intergenic 55.0%
! CCACACGGATTGAGCATCCA+CGG + chr2_4:12323127-12323146 None:intergenic 55.0%
CGTGGATGCTCAATCCGTGT+GGG - chr2_4:12323125-12323144 Msa0315760:intron 55.0%
!! TCTCGGTGTCTCTTCCCACA+CGG + chr2_4:12323142-12323161 None:intergenic 55.0%
TTGAGCGCTAAAAGCGGCCT+TGG + chr2_4:12323214-12323233 None:intergenic 55.0%
CAGCACTGCTGCAGTTTGTG+AGG - chr2_4:12323548-12323567 Msa0315760:intron 55.0%
TGCTGCAGTTTGTGAGGTGC+TGG - chr2_4:12323554-12323573 Msa0315760:intron 55.0%
! GCTGCAGTTTGTGAGGTGCT+GGG - chr2_4:12323555-12323574 Msa0315760:intron 55.0%
GATCGGAGTTGCAAGGGGAG+AGG + chr2_4:12320458-12320477 None:intergenic 60.0%
! TCTAGCACTGGACAAGCCCC+TGG - chr2_4:12321170-12321189 Msa0315760:CDS 60.0%
!! TGGCCTGTTGGTGGCTATCC+TGG - chr2_4:12321771-12321790 Msa0315760:CDS 60.0%
GGACCAGGATAGCCACCAAC+AGG + chr2_4:12321777-12321796 None:intergenic 60.0%
TGGTGGCTATCCTGGTCCTC+AGG - chr2_4:12321779-12321798 Msa0315760:CDS 60.0%
GGTCCTTATTACTGCGCCGC+CGG - chr2_4:12321896-12321915 Msa0315760:intron 60.0%
GTCCTTATTACTGCGCCGCC+GGG - chr2_4:12321897-12321916 Msa0315760:intron 60.0%
TCCTTATTACTGCGCCGCCG+GGG - chr2_4:12321898-12321917 Msa0315760:intron 60.0%
TGGAGAGGTTATGCCTGGCC+AGG - chr2_4:12322003-12322022 Msa0315760:intron 60.0%
CAGGGCGATTGGAATGGTGC+AGG - chr2_4:12322704-12322723 Msa0315760:intron 60.0%
ATGCAGGGAGTGGCTAACCG+TGG - chr2_4:12323107-12323126 Msa0315760:intron 60.0%
CCGTGGATGCTCAATCCGTG+TGG - chr2_4:12323124-12323143 Msa0315760:intron 60.0%
CAGGCGTCCGGCTTCAAACA+TGG - chr2_4:12323402-12323421 Msa0315760:intron 60.0%
GCCCCGGCGGCGCAGTAATA+AGG + chr2_4:12321902-12321921 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 12319063 12323882 12319063 ID=Msa0315760;Name=Msa0315760
chr2_4 mRNA 12319063 12323882 12319063 ID=Msa0315760-mRNA-1;Parent=Msa0315760;Name=Msa0315760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=246|0.92|0.85|1|0.92|0.85|14|354|409
chr2_4 exon 12319063 12319556 12319063 ID=Msa0315760-mRNA-1:exon:4774;Parent=Msa0315760-mRNA-1
chr2_4 exon 12319772 12319832 12319772 ID=Msa0315760-mRNA-1:exon:4773;Parent=Msa0315760-mRNA-1
chr2_4 exon 12319942 12320101 12319942 ID=Msa0315760-mRNA-1:exon:4772;Parent=Msa0315760-mRNA-1
chr2_4 exon 12320201 12320238 12320201 ID=Msa0315760-mRNA-1:exon:4771;Parent=Msa0315760-mRNA-1
chr2_4 exon 12320320 12320373 12320320 ID=Msa0315760-mRNA-1:exon:4770;Parent=Msa0315760-mRNA-1
chr2_4 exon 12320579 12320625 12320579 ID=Msa0315760-mRNA-1:exon:4769;Parent=Msa0315760-mRNA-1
chr2_4 exon 12320950 12321049 12320950 ID=Msa0315760-mRNA-1:exon:4768;Parent=Msa0315760-mRNA-1
chr2_4 exon 12321145 12321232 12321145 ID=Msa0315760-mRNA-1:exon:4767;Parent=Msa0315760-mRNA-1
chr2_4 exon 12321392 12321498 12321392 ID=Msa0315760-mRNA-1:exon:4766;Parent=Msa0315760-mRNA-1
chr2_4 exon 12321589 12321637 12321589 ID=Msa0315760-mRNA-1:exon:4765;Parent=Msa0315760-mRNA-1
chr2_4 exon 12321729 12321832 12321729 ID=Msa0315760-mRNA-1:exon:4764;Parent=Msa0315760-mRNA-1
chr2_4 exon 12321922 12321961 12321922 ID=Msa0315760-mRNA-1:exon:4763;Parent=Msa0315760-mRNA-1
chr2_4 exon 12322301 12322545 12322301 ID=Msa0315760-mRNA-1:exon:4762;Parent=Msa0315760-mRNA-1
chr2_4 exon 12323640 12323882 12323640 ID=Msa0315760-mRNA-1:exon:4761;Parent=Msa0315760-mRNA-1
chr2_4 five_prime_UTR 12323640 12323882 12323640 ID=Msa0315760-mRNA-1:five_prime_utr;Parent=Msa0315760-mRNA-1
chr2_4 five_prime_UTR 12322543 12322545 12322543 ID=Msa0315760-mRNA-1:five_prime_utr;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12322301 12322542 12322301 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12321922 12321961 12321922 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12321729 12321832 12321729 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12321589 12321637 12321589 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12321392 12321498 12321392 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12321145 12321232 12321145 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12320950 12321049 12320950 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12320579 12320625 12320579 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12320320 12320373 12320320 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12320201 12320238 12320201 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12319942 12320101 12319942 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12319772 12319832 12319772 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 CDS 12319417 12319556 12319417 ID=Msa0315760-mRNA-1:cds;Parent=Msa0315760-mRNA-1
chr2_4 three_prime_UTR 12319063 12319416 12319063 ID=Msa0315760-mRNA-1:three_prime_utr;Parent=Msa0315760-mRNA-1
Gene Sequence

>Msa0315760

ATGGCACAGATTTTGGCTCCTTCTACACAATGTCAGACAAGAATCACAAAAACCTCTCCCCTTGCAACTCCGATCTCATCAAAGATGTGGAGTTCTTTGGTTATGAAACAAAACAAGAAAGTTGCACGTTCTGCTAAATTCAGAGTAATGGCAATCAACTCTGGCACCATCAACAGGGTTGAGGATTTACTTAATTTGGACATCACTCCATTCACTGACAGCATAATTGCTGAGTACATCTGGATTGGTGGAACAGGAATCGATGTGCGCAGTAAATCAAGAACCATATCAAAGCCTGTTGAGCATCCCTCTGAGCTTCCTAAGTGGAACTATGATGGATCTAGCACTGGACAAGCCCCTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGCGGTGGTAACAACATTTTGGTCATTTGCGATGCTTATACACCACAAGGTGAGCCTATCCCTACAAATAAGAGACATAAAGCTGCTGAAATCTTCAGTAACCCAAAGGTTGAGGCTGAAATTCCGTGGTATGGAATCGAACAAGAGTACACCTTACTTCAAACAGATGTGAAATGGCCATTAGGTTGGCCTGTTGGTGGCTATCCTGGTCCTCAGGGTCCTTATTACTGCGCCGCCGGGGCAGATAAGTCATTTGGTCGTGATATATCTGATGCTCATTACAAGGCTTGCTTATATGCTGGAATTAACATCAGTGGTATTGAAGCTGGTGATCATATCTGGGCTTCAAGGTACATCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTGCTCACCCTTGATCCAAAACCAATTGAGGGCGATTGGAATGGTGCAGGATGTCACACCAATTACAGTACAAAGAGCATGAGGGAAGATGGAGGGTTTGAGGTAATAAAGAAGGCAATTTTGAACCTTTCCCTTCGCCACAAGGTTCACATTGAAGCATATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAGACTGCCAGCATCAACACATTTTCTTGGGGAGTGGCTAACCGTGGATGCTCAATCCGTGTGGGAAGAGACACCGAGAAGAATGGCAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCAAACATGGATCCATATGTGGTGACAGCCTTATTGGCAGAGAGTACATTATTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATTGCATTGAAAGTCTAA

Protein sequence

>Msa0315760

MAQILAPSTQCQTRITKTSPLATPISSKMWSSLVMKQNKKVARSAKFRVMAINSGTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQKIALKV*