AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0498250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498250 MtrunA17_Chr3g0095461 98.467 261 4 0 1 261 1 261 0.0 533
Msa0498250 MtrunA17_Chr5g0442381 73.881 268 61 4 2 261 3 269 4.55e-133 376
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498250 AT1G06680.1 74.340 265 62 2 1 261 1 263 5.53e-140 394
Msa0498250 AT1G06680.2 83.333 180 30 0 82 261 40 219 4.03e-110 317
Msa0498250 AT2G30790.1 80.000 125 25 0 137 261 1 125 3.62e-70 212

Find 89 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAGAGGTGGTTTA+AGG 0.210913 3_4:+34031545 Msa0498250:CDS
AATTAGAGAGCATGTTTAAA+AGG 0.227167 3_4:-34031699 None:intergenic
CTTGGAAAACAAGCCTTCTT+TGG 0.229953 3_4:+34030963 Msa0498250:CDS
TTGCTTGGATTCCACTTTGC+TGG 0.251510 3_4:-34030214 None:intergenic
GAAGAAATCAACCTCGTAAA+TGG 0.255505 3_4:+34031785 Msa0498250:three_prime_UTR
TTCACCAAAGTTCTTAATTT+AGG 0.265359 3_4:-34031613 None:intergenic
TTCGTTGCAGCCAATGTCTT+TGG 0.280236 3_4:+34030130 Msa0498250:intron
ACCTGAGGAGTTCCTATCTA+AGG 0.292484 3_4:+34030351 Msa0498250:CDS
TGGAGTTGTAAGAGCATATT+GGG 0.306962 3_4:-34029191 None:intergenic
CTTTGAATTACATTTAGATA+TGG 0.310025 3_4:-34029063 None:intergenic
ATGGAGTTGTAAGAGCATAT+TGG 0.315427 3_4:-34029192 None:intergenic
ATTGAACATGTGGTTGGTTT+TGG 0.331888 3_4:-34029025 None:intergenic
TTGGTCTGTTGGTAACAATT+TGG 0.365385 3_4:-34029234 None:intergenic
ATACTTAGACTCTAGCAAAA+TGG 0.377812 3_4:+34029144 Msa0498250:exon
GGGAACTCTCTCTCTTTGCT+TGG 0.385361 3_4:-34030229 None:intergenic
CGTTGAGACAAACTTCTAGA+TGG 0.406600 3_4:-34029211 None:intergenic
AAATTACCTCTGAATCAGTT+TGG 0.412596 3_4:-34030986 None:intergenic
GTTGCCTAAATTAAGAACTT+TGG 0.414675 3_4:+34031609 Msa0498250:exon
GGAGACAAGAGGTGGTTTAA+GGG 0.417477 3_4:+34031546 Msa0498250:CDS
TTGAATCCATCTCCATTGTA+TGG 0.419187 3_4:-34030181 None:intergenic
GAGAGTTCAGCACCAGTGAT+TGG 0.419628 3_4:+34031399 Msa0498250:CDS
CTTATTCTTAACTAAGCACT+TGG 0.423335 3_4:+34031659 Msa0498250:three_prime_UTR
TTTCACCATTGTTCCACCAT+TGG 0.425621 3_4:+34031963 Msa0498250:three_prime_UTR
AACAATATGGTTTGGTCTGT+TGG 0.428277 3_4:-34029245 None:intergenic
CTCCTTGGTGCTGCTGCTGT+TGG 0.429596 3_4:+34029340 Msa0498250:CDS
TGCATTTGTGATGTGGGATA+AGG 0.430538 3_4:-34028965 None:intergenic
TCTGTGCCTTGCAAACAATA+TGG 0.436546 3_4:-34029258 None:intergenic
TGAATCAGTTTGGCCAAAGA+AGG 0.439035 3_4:-34030976 None:intergenic
TTGCAGGTGGACTATTTGCT+TGG 0.444087 3_4:+34030945 Msa0498250:intron
AGATTCTTAAAACCTTAGAT+AGG 0.450368 3_4:-34030363 None:intergenic
TTGGATTTGAAGTGGATGAT+TGG 0.452855 3_4:-34028999 None:intergenic
TTAGCACTTTCTGTACTCCT+TGG 0.453497 3_4:+34029325 Msa0498250:CDS
CTTTGCCTTTCCAAAGACAT+TGG 0.454759 3_4:-34030140 None:intergenic
AAGGATATGTCTCCGGCTCT+TGG 0.458419 3_4:+34031826 Msa0498250:three_prime_UTR
TATGAATGAGACTGAGAGTA+GGG 0.459488 3_4:-34029102 None:intergenic
TGATGTGGGATAAGGTTGTA+AGG 0.467999 3_4:-34028957 None:intergenic
AGAGAGAGAGTTCCCTGGTC+AGG 0.474121 3_4:+34030237 Msa0498250:CDS
TACATTTGCAAGGCTCAAGC+TGG 0.487789 3_4:+34031525 Msa0498250:CDS
ATTACAGCAACTGTAAATGA+TGG 0.489996 3_4:+34031495 Msa0498250:CDS
GCCTTGCAAACAATATGGTT+TGG 0.494429 3_4:-34029253 None:intergenic
TCTCCATAGGCAGCATCAGC+AGG 0.502473 3_4:-34029376 None:intergenic
TCACCTGCTGATGCTGCCTA+TGG 0.505052 3_4:+34029373 Msa0498250:CDS
TTTGATTGCATTTGTGATGT+GGG 0.512792 3_4:-34028971 None:intergenic
TTACAGTTGCTGTAATCAGC+TGG 0.513113 3_4:-34031488 None:intergenic
ATATGAATGAGACTGAGAGT+AGG 0.515599 3_4:-34029103 None:intergenic
TAAATTAAGAACTTTGGTGA+AGG 0.520267 3_4:+34031615 Msa0498250:exon
GATGCTGCCTATGGAGAAGC+TGG 0.528839 3_4:+34029382 Msa0498250:CDS
CTGTCAGTGTTGTTTCTCGT+AGG 0.529367 3_4:+34029302 Msa0498250:CDS
TATCTCAAAGGATATGTCTC+CGG 0.531045 3_4:+34031819 Msa0498250:three_prime_UTR
TACTGTTTCCCACCAATCAC+TGG 0.540361 3_4:-34031411 None:intergenic
ACCTTAGATAGGAACTCCTC+AGG 0.540944 3_4:-34030352 None:intergenic
GTCAGTTGTTTGGACAAGAA+CGG 0.541430 3_4:-34030302 None:intergenic
AACTGTTGGTTCCAGCAAAG+TGG 0.546443 3_4:+34030203 Msa0498250:CDS
TCGTATCTAAGAACCTGACC+AGG 0.546447 3_4:-34030250 None:intergenic
GGATATCTTCAACCAAGAGC+CGG 0.548027 3_4:-34031838 None:intergenic
ATTTGATTGCATTTGTGATG+TGG 0.551626 3_4:-34028972 None:intergenic
TTTGGATATTGGATTTGAAG+TGG 0.551682 3_4:-34029007 None:intergenic
TGTGGCATTGAACATGTGGT+TGG 0.552144 3_4:-34029031 None:intergenic
AAATTAAGAACTTTGGTGAA+GGG 0.554191 3_4:+34031616 Msa0498250:exon
CTTTGGCCAAACTGATTCAG+AGG 0.554518 3_4:+34030980 Msa0498250:CDS
ACCAAACCATATTGTTTGCA+AGG 0.554941 3_4:+34029252 Msa0498250:CDS
TGGAGATGGATTCAAACTGT+TGG 0.556213 3_4:+34030189 Msa0498250:CDS
TGCAGCCAATGTCTTTGGAA+AGG 0.567085 3_4:+34030135 Msa0498250:intron
GATAAATAAAAGTATCTCAA+AGG 0.567547 3_4:+34031807 Msa0498250:three_prime_UTR
TAAGATGTTTGCCACAGCTA+CGG 0.572617 3_4:-34031376 None:intergenic
AGTTCAGCACCAGTGATTGG+TGG 0.574912 3_4:+34031402 Msa0498250:CDS
ATACAGTTTAAAATTCTCAA+CGG 0.578850 3_4:-34031744 None:intergenic
CTGATGTGGCATTGAACATG+TGG 0.579978 3_4:-34029035 None:intergenic
GTTCAGCACCAGTGATTGGT+GGG 0.588274 3_4:+34031403 Msa0498250:CDS
AGGACTGCTGATGGAGATGA+AGG 0.590065 3_4:+34031456 Msa0498250:CDS
CTCCTCAGGTGAACCATAGT+CGG 0.592937 3_4:-34030338 None:intergenic
TGATACAAATGCCGTAGCTG+TGG 0.593917 3_4:+34031365 Msa0498250:CDS
AGCAAAGAGAGAGAGTTCCC+TGG 0.594993 3_4:+34030232 Msa0498250:CDS
GGGAGCAAGAAAGTTTGTTG+AGG 0.618163 3_4:+34031566 Msa0498250:CDS
GGCACAGAAACAAGAAGTTG+AGG 0.624235 3_4:+34029273 Msa0498250:CDS
GTGCAAGAAGCATTGTGTAG+AGG 0.636043 3_4:-34029167 None:intergenic
TGGAAAGCTATACATTTGCA+AGG 0.638163 3_4:+34031515 Msa0498250:CDS
AGCCAACAGCAGCAGCACCA+AGG 0.639865 3_4:-34029342 None:intergenic
AGGCTCAAGCTGGAGACAAG+AGG 0.642347 3_4:+34031535 Msa0498250:CDS
TTGATCCAATGGTGGAACAA+TGG 0.649133 3_4:-34031968 None:intergenic
GAGTAGGGAGAGAGTGTGTG+TGG 0.649481 3_4:-34029087 None:intergenic
TAGATATGGTGTGTCTGATG+TGG 0.653512 3_4:-34029049 None:intergenic
CTCAAGCTGGAGACAAGAGG+TGG 0.660302 3_4:+34031538 Msa0498250:CDS
ACTGCTGATGGAGATGAAGG+TGG 0.671218 3_4:+34031459 Msa0498250:CDS
GGAGTTGTAAGAGCATATTG+GGG 0.678383 3_4:-34029190 None:intergenic
CACCGACTATGGTTCACCTG+AGG 0.694411 3_4:+34030336 Msa0498250:CDS
CGTATCTAAGAACCTGACCA+GGG 0.700077 3_4:-34030249 None:intergenic
TGGTCAGGTTCTTAGATACG+AGG 0.713849 3_4:+34030252 Msa0498250:CDS
GAGTTGTAAGAGCATATTGG+GGG 0.741082 3_4:-34029189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAATATATGTTCATA+AGG - chr3_4:34030541-34030560 None:intergenic 10.0%
!!! GCTAATTTTATTTTTAAATA+CGG + chr3_4:34031887-34031906 Msa0498250:intron 10.0%
!! TCTAAAGATGAAAAAAAATA+AGG - chr3_4:34029422-34029441 None:intergenic 15.0%
!! TTGTTTAATATTTAATCGAA+CGG + chr3_4:34029756-34029775 Msa0498250:intron 15.0%
!! GTATATGAAAAATCATTTAT+TGG + chr3_4:34031763-34031782 Msa0498250:three_prime_UTR 15.0%
!!! TTTTGTTGTTGATAAAATTT+AGG - chr3_4:34031862-34031881 None:intergenic 15.0%
!!! TTTTATCAACAACAAAAATA+AGG + chr3_4:34031865-34031884 Msa0498250:intron 15.0%
!! CTTTGAATTACATTTAGATA+TGG - chr3_4:34029066-34029085 None:intergenic 20.0%
!!! GAATACAATTTTCTAATCTT+AGG - chr3_4:34029464-34029483 None:intergenic 20.0%
!! ATTATTGTATGAAGATTAGA+CGG + chr3_4:34029674-34029693 Msa0498250:intron 20.0%
!!! TTTCCTTTAAAATACTACTT+AGG + chr3_4:34029722-34029741 Msa0498250:intron 20.0%
!!! TATCCTAAGTAGTATTTTAA+AGG - chr3_4:34029728-34029747 None:intergenic 20.0%
!! AAATATAATCAGAATAGTTG+TGG + chr3_4:34029935-34029954 Msa0498250:intron 20.0%
!!! ATGTTAATCACATTTTACTT+TGG + chr3_4:34029970-34029989 Msa0498250:intron 20.0%
!!! TTAGAAATTTGAAGTTATAG+AGG - chr3_4:34030659-34030678 None:intergenic 20.0%
!!! ATACAGTTTAAAATTCTCAA+CGG - chr3_4:34031747-34031766 None:intergenic 20.0%
!!! GATAAATAAAAGTATCTCAA+AGG + chr3_4:34031807-34031826 Msa0498250:three_prime_UTR 20.0%
! AAGTTGTTTATAAATGTGAC+CGG + chr3_4:34029563-34029582 Msa0498250:intron 25.0%
! GTCTAATCTTCATACAATAA+TGG - chr3_4:34029675-34029694 None:intergenic 25.0%
! TTTAATATTTAATCGAACGG+TGG + chr3_4:34029759-34029778 Msa0498250:intron 25.0%
! AGAAATCAAATGAAAACTAG+TGG + chr3_4:34030011-34030030 Msa0498250:intron 25.0%
! AGATTCTTAAAACCTTAGAT+AGG - chr3_4:34030366-34030385 None:intergenic 25.0%
! TCAACAAATATTGTATGTTG+AGG - chr3_4:34030575-34030594 None:intergenic 25.0%
! TTCCATTTGGAAAAATAGTT+TGG + chr3_4:34030734-34030753 Msa0498250:intron 25.0%
!!! AACCAAACTATTTTTCCAAA+TGG - chr3_4:34030739-34030758 None:intergenic 25.0%
!!! TAGTTTGGTTCAATGATTTT+TGG + chr3_4:34030749-34030768 Msa0498250:intron 25.0%
! AAAATGCCTTTGAACTTTAA+GGG + chr3_4:34030876-34030895 Msa0498250:intron 25.0%
! TTCACCAAAGTTCTTAATTT+AGG - chr3_4:34031616-34031635 None:intergenic 25.0%
! TAAATTAAGAACTTTGGTGA+AGG + chr3_4:34031615-34031634 Msa0498250:exon 25.0%
! AAATTAAGAACTTTGGTGAA+GGG + chr3_4:34031616-34031635 Msa0498250:exon 25.0%
!!! ACTTGGAGTTTTAATCATAA+TGG + chr3_4:34031676-34031695 Msa0498250:three_prime_UTR 25.0%
!! AATTAGAGAGCATGTTTAAA+AGG - chr3_4:34031702-34031721 None:intergenic 25.0%
!!! CTTTTATTTATCCATTTACG+AGG - chr3_4:34031799-34031818 None:intergenic 25.0%
! TTTAAATACGGCTAATTCTA+CGG + chr3_4:34031899-34031918 Msa0498250:intron 25.0%
TTTGATTGCATTTGTGATGT+GGG - chr3_4:34028974-34028993 None:intergenic 30.0%
ATTTGATTGCATTTGTGATG+TGG - chr3_4:34028975-34028994 None:intergenic 30.0%
TTTGGATATTGGATTTGAAG+TGG - chr3_4:34029010-34029029 None:intergenic 30.0%
ATACTTAGACTCTAGCAAAA+TGG + chr3_4:34029144-34029163 Msa0498250:exon 30.0%
CATTATATAACTGACGTATC+TGG - chr3_4:34029528-34029547 None:intergenic 30.0%
TCGTTTGATCTTTAATCCAA+TGG + chr3_4:34029610-34029629 Msa0498250:intron 30.0%
TTTGATCTTTAATCCAATGG+TGG + chr3_4:34029613-34029632 Msa0498250:intron 30.0%
TCAAATGAAAACTAGTGGTT+TGG + chr3_4:34030016-34030035 Msa0498250:intron 30.0%
!! CTTAATCTCAAAGTCACTTT+TGG - chr3_4:34030089-34030108 None:intergenic 30.0%
! TGTTCTTTTTGTCAGTTGTT+TGG - chr3_4:34030315-34030334 None:intergenic 30.0%
CAAATTTCTAAATTCGTCAC+TGG + chr3_4:34030668-34030687 Msa0498250:intron 30.0%
CAAATAAGATTACCACCAAT+AGG + chr3_4:34030698-34030717 Msa0498250:intron 30.0%
ATTCTTCTACTTAATGTACG+AGG + chr3_4:34030785-34030804 Msa0498250:intron 30.0%
GAAAATGCCTTTGAACTTTA+AGG + chr3_4:34030875-34030894 Msa0498250:intron 30.0%
TTATTGCCCTTAAAGTTCAA+AGG - chr3_4:34030885-34030904 None:intergenic 30.0%
! CTTGGCTGAAATTTAAGATT+TGG + chr3_4:34030913-34030932 Msa0498250:intron 30.0%
AAATTACCTCTGAATCAGTT+TGG - chr3_4:34030989-34031008 None:intergenic 30.0%
ACAGTACATTTCATAATGCA+GGG - chr3_4:34031030-34031049 None:intergenic 30.0%
!! CATCATCTTTTAAGGAAATC+TGG - chr3_4:34031057-34031076 None:intergenic 30.0%
! CCAATATGCATCATCTTTTA+AGG - chr3_4:34031065-34031084 None:intergenic 30.0%
CCTTAAAAGATGATGCATAT+TGG + chr3_4:34031062-34031081 Msa0498250:intron 30.0%
TTGAATGTAACCACATTTGT+CGG + chr3_4:34031180-34031199 Msa0498250:intron 30.0%
ATGATGAGTTGTGCTAATAA+GGG - chr3_4:34031308-34031327 None:intergenic 30.0%
AATGATGAGTTGTGCTAATA+AGG - chr3_4:34031309-34031328 None:intergenic 30.0%
!! ACAACATATCAGTTTTGACA+AGG + chr3_4:34031436-34031455 Msa0498250:CDS 30.0%
ATTACAGCAACTGTAAATGA+TGG + chr3_4:34031495-34031514 Msa0498250:CDS 30.0%
GTTGCCTAAATTAAGAACTT+TGG + chr3_4:34031609-34031628 Msa0498250:exon 30.0%
CTTATTCTTAACTAAGCACT+TGG + chr3_4:34031659-34031678 Msa0498250:three_prime_UTR 30.0%
! TTGGATTTGAAGTGGATGAT+TGG - chr3_4:34029002-34029021 None:intergenic 35.0%
!!! ATGTGGTTGGTTTTGGATAT+TGG - chr3_4:34029021-34029040 None:intergenic 35.0%
!!! ATTGAACATGTGGTTGGTTT+TGG - chr3_4:34029028-34029047 None:intergenic 35.0%
TATGAATGAGACTGAGAGTA+GGG - chr3_4:34029105-34029124 None:intergenic 35.0%
ATATGAATGAGACTGAGAGT+AGG - chr3_4:34029106-34029125 None:intergenic 35.0%
! TGGAGTTGTAAGAGCATATT+GGG - chr3_4:34029194-34029213 None:intergenic 35.0%
! ATGGAGTTGTAAGAGCATAT+TGG - chr3_4:34029195-34029214 None:intergenic 35.0%
!! TTGGTCTGTTGGTAACAATT+TGG - chr3_4:34029237-34029256 None:intergenic 35.0%
!! AACAATATGGTTTGGTCTGT+TGG - chr3_4:34029248-34029267 None:intergenic 35.0%
ACCAAACCATATTGTTTGCA+AGG + chr3_4:34029252-34029271 Msa0498250:CDS 35.0%
AAAAATACCAGCTTCTCCAT+AGG - chr3_4:34029392-34029411 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr3_4:34029566-34029585 Msa0498250:intron 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr3_4:34029567-34029586 Msa0498250:intron 35.0%
ATAGCTCATGCATGTTATGT+TGG + chr3_4:34029858-34029877 Msa0498250:intron 35.0%
! ACAGACTTTTTGCCATACAA+TGG + chr3_4:34030169-34030188 Msa0498250:CDS 35.0%
! TTTTTGCCATACAATGGAGA+TGG + chr3_4:34030175-34030194 Msa0498250:CDS 35.0%
TTGAATCCATCTCCATTGTA+TGG - chr3_4:34030184-34030203 None:intergenic 35.0%
! AAAAAGAACATCACCGACTA+TGG + chr3_4:34030325-34030344 Msa0498250:CDS 35.0%
! ATATTTTACAACCGTTCTCG+AGG + chr3_4:34030440-34030459 Msa0498250:intron 35.0%
! TATTTTACAACCGTTCTCGA+GGG + chr3_4:34030441-34030460 Msa0498250:intron 35.0%
ACATTAAATTCCCTCGAGAA+CGG - chr3_4:34030454-34030473 None:intergenic 35.0%
TCGAGGGAATTTAATGTTAC+AGG + chr3_4:34030457-34030476 Msa0498250:intron 35.0%
TTTCTAAATTCGTCACTGGT+TGG + chr3_4:34030672-34030691 Msa0498250:intron 35.0%
AATCCAAAGATAGCTCCTAT+TGG - chr3_4:34030716-34030735 None:intergenic 35.0%
AGCTATCTTTGGATTCCATT+TGG + chr3_4:34030721-34030740 Msa0498250:intron 35.0%
TTCTACTTAATGTACGAGGA+AGG + chr3_4:34030789-34030808 Msa0498250:intron 35.0%
AAAAATCGACGAATGTTCAG+TGG + chr3_4:34030824-34030843 Msa0498250:intron 35.0%
!!! GATTTGGTTTTGATCTTTGC+AGG + chr3_4:34030929-34030948 Msa0498250:intron 35.0%
CACAGTACATTTCATAATGC+AGG - chr3_4:34031031-34031050 None:intergenic 35.0%
TCTATGTGTGAGTTCATATC+TGG - chr3_4:34031129-34031148 None:intergenic 35.0%
TTTCTGAACTTGAATTCCTC+AGG + chr3_4:34031335-34031354 Msa0498250:intron 35.0%
TTCTGAACTTGAATTCCTCA+GGG + chr3_4:34031336-34031355 Msa0498250:intron 35.0%
TGGAAAGCTATACATTTGCA+AGG + chr3_4:34031515-34031534 Msa0498250:CDS 35.0%
GAAGAAATCAACCTCGTAAA+TGG + chr3_4:34031785-34031804 Msa0498250:three_prime_UTR 35.0%
TATCTCAAAGGATATGTCTC+CGG + chr3_4:34031819-34031838 Msa0498250:three_prime_UTR 35.0%
TGATGTGGGATAAGGTTGTA+AGG - chr3_4:34028960-34028979 None:intergenic 40.0%
TGCATTTGTGATGTGGGATA+AGG - chr3_4:34028968-34028987 None:intergenic 40.0%
TAGATATGGTGTGTCTGATG+TGG - chr3_4:34029052-34029071 None:intergenic 40.0%
! GAGTTGTAAGAGCATATTGG+GGG - chr3_4:34029192-34029211 None:intergenic 40.0%
! GGAGTTGTAAGAGCATATTG+GGG - chr3_4:34029193-34029212 None:intergenic 40.0%
CGTTGAGACAAACTTCTAGA+TGG - chr3_4:34029214-34029233 None:intergenic 40.0%
GCCTTGCAAACAATATGGTT+TGG - chr3_4:34029256-34029275 None:intergenic 40.0%
TCTGTGCCTTGCAAACAATA+TGG - chr3_4:34029261-34029280 None:intergenic 40.0%
TTAGCACTTTCTGTACTCCT+TGG + chr3_4:34029325-34029344 Msa0498250:CDS 40.0%
CTTTGCCTTTCCAAAGACAT+TGG - chr3_4:34030143-34030162 None:intergenic 40.0%
! TGGAGATGGATTCAAACTGT+TGG + chr3_4:34030189-34030208 Msa0498250:CDS 40.0%
GTCAGTTGTTTGGACAAGAA+CGG - chr3_4:34030305-34030324 None:intergenic 40.0%
AGGGCAATAACGAAAGTTCT+TGG + chr3_4:34030895-34030914 Msa0498250:intron 40.0%
!!! TTGGTTTTGATCTTTGCAGG+TGG + chr3_4:34030932-34030951 Msa0498250:intron 40.0%
CTTGGAAAACAAGCCTTCTT+TGG + chr3_4:34030963-34030982 Msa0498250:CDS 40.0%
TGAATCAGTTTGGCCAAAGA+AGG - chr3_4:34030979-34030998 None:intergenic 40.0%
ACCAACAATTCGAATCGAAG+GGG - chr3_4:34031245-34031264 None:intergenic 40.0%
CACCAACAATTCGAATCGAA+GGG - chr3_4:34031246-34031265 None:intergenic 40.0%
ACACCAACAATTCGAATCGA+AGG - chr3_4:34031247-34031266 None:intergenic 40.0%
TTTGTATCAAAACCACCCTG+AGG - chr3_4:34031354-34031373 None:intergenic 40.0%
TAAGATGTTTGCCACAGCTA+CGG - chr3_4:34031379-34031398 None:intergenic 40.0%
TTACAGTTGCTGTAATCAGC+TGG - chr3_4:34031491-34031510 None:intergenic 40.0%
TTTCACCATTGTTCCACCAT+TGG + chr3_4:34031963-34031982 Msa0498250:three_prime_UTR 40.0%
! TTGATCCAATGGTGGAACAA+TGG - chr3_4:34031971-34031990 None:intergenic 40.0%
! TGTGGCATTGAACATGTGGT+TGG - chr3_4:34029034-34029053 None:intergenic 45.0%
! CTGATGTGGCATTGAACATG+TGG - chr3_4:34029038-34029057 None:intergenic 45.0%
!! GTGCAAGAAGCATTGTGTAG+AGG - chr3_4:34029170-34029189 None:intergenic 45.0%
GGCACAGAAACAAGAAGTTG+AGG + chr3_4:34029273-34029292 Msa0498250:CDS 45.0%
!! CTGTCAGTGTTGTTTCTCGT+AGG + chr3_4:34029302-34029321 Msa0498250:CDS 45.0%
GCTCTAACTTATACTCCCTC+CGG - chr3_4:34029585-34029604 None:intergenic 45.0%
TAGTCTCAAGTCTCCACCAT+TGG - chr3_4:34029629-34029648 None:intergenic 45.0%
TTCGTTGCAGCCAATGTCTT+TGG + chr3_4:34030130-34030149 Msa0498250:intron 45.0%
! TGCAGCCAATGTCTTTGGAA+AGG + chr3_4:34030135-34030154 Msa0498250:intron 45.0%
!! AACTGTTGGTTCCAGCAAAG+TGG + chr3_4:34030203-34030222 Msa0498250:CDS 45.0%
TTGCTTGGATTCCACTTTGC+TGG - chr3_4:34030217-34030236 None:intergenic 45.0%
CGTATCTAAGAACCTGACCA+GGG - chr3_4:34030252-34030271 None:intergenic 45.0%
TCGTATCTAAGAACCTGACC+AGG - chr3_4:34030253-34030272 None:intergenic 45.0%
TGGTCAGGTTCTTAGATACG+AGG + chr3_4:34030252-34030271 Msa0498250:CDS 45.0%
ACCTGAGGAGTTCCTATCTA+AGG + chr3_4:34030351-34030370 Msa0498250:CDS 45.0%
ACCTTAGATAGGAACTCCTC+AGG - chr3_4:34030355-34030374 None:intergenic 45.0%
! TTCATAAGGTGTCAGCTCAG+TGG - chr3_4:34030527-34030546 None:intergenic 45.0%
CCAAAGATAGCTCCTATTGG+TGG - chr3_4:34030713-34030732 None:intergenic 45.0%
CCACCAATAGGAGCTATCTT+TGG + chr3_4:34030710-34030729 Msa0498250:intron 45.0%
!! TTGCAGGTGGACTATTTGCT+TGG + chr3_4:34030945-34030964 Msa0498250:intron 45.0%
! CTTTGGCCAAACTGATTCAG+AGG + chr3_4:34030980-34030999 Msa0498250:CDS 45.0%
GACATTGACACCGACAAATG+TGG - chr3_4:34031193-34031212 None:intergenic 45.0%
! ACCCCTTCGATTCGAATTGT+TGG + chr3_4:34031241-34031260 Msa0498250:intron 45.0%
TGAACTTGAATTCCTCAGGG+TGG + chr3_4:34031339-34031358 Msa0498250:intron 45.0%
TGATACAAATGCCGTAGCTG+TGG + chr3_4:34031365-34031384 Msa0498250:CDS 45.0%
TACTGTTTCCCACCAATCAC+TGG - chr3_4:34031414-34031433 None:intergenic 45.0%
!! GTTTTGACAAGGACTGCTGA+TGG + chr3_4:34031447-34031466 Msa0498250:CDS 45.0%
TACATTTGCAAGGCTCAAGC+TGG + chr3_4:34031525-34031544 Msa0498250:CDS 45.0%
TGGAGACAAGAGGTGGTTTA+AGG + chr3_4:34031545-34031564 Msa0498250:CDS 45.0%
GGAGACAAGAGGTGGTTTAA+GGG + chr3_4:34031546-34031565 Msa0498250:CDS 45.0%
!! GGGAGCAAGAAAGTTTGTTG+AGG + chr3_4:34031566-34031585 Msa0498250:CDS 45.0%
GGATATCTTCAACCAAGAGC+CGG - chr3_4:34031841-34031860 None:intergenic 45.0%
ACTGCCTGAATCTGTGACTG+CGG + chr3_4:34029791-34029810 Msa0498250:intron 50.0%
TTCTCCGCAGTCACAGATTC+AGG - chr3_4:34029798-34029817 None:intergenic 50.0%
GGGAACTCTCTCTCTTTGCT+TGG - chr3_4:34030232-34030251 None:intergenic 50.0%
AGCAAAGAGAGAGAGTTCCC+TGG + chr3_4:34030232-34030251 Msa0498250:CDS 50.0%
CTCCTCAGGTGAACCATAGT+CGG - chr3_4:34030341-34030360 None:intergenic 50.0%
TGTCAGACACTGACACATGC+TGG + chr3_4:34031209-34031228 Msa0498250:intron 50.0%
GAGAGTTCAGCACCAGTGAT+TGG + chr3_4:34031399-34031418 Msa0498250:CDS 50.0%
AGTTCAGCACCAGTGATTGG+TGG + chr3_4:34031402-34031421 Msa0498250:CDS 50.0%
GTTCAGCACCAGTGATTGGT+GGG + chr3_4:34031403-34031422 Msa0498250:CDS 50.0%
AGGACTGCTGATGGAGATGA+AGG + chr3_4:34031456-34031475 Msa0498250:CDS 50.0%
ACTGCTGATGGAGATGAAGG+TGG + chr3_4:34031459-34031478 Msa0498250:CDS 50.0%
AAGGATATGTCTCCGGCTCT+TGG + chr3_4:34031826-34031845 Msa0498250:three_prime_UTR 50.0%
! GAGTAGGGAGAGAGTGTGTG+TGG - chr3_4:34029090-34029109 None:intergenic 55.0%
TCACCTGCTGATGCTGCCTA+TGG + chr3_4:34029373-34029392 Msa0498250:CDS 55.0%
TCTCCATAGGCAGCATCAGC+AGG - chr3_4:34029379-34029398 None:intergenic 55.0%
GATGCTGCCTATGGAGAAGC+TGG + chr3_4:34029382-34029401 Msa0498250:CDS 55.0%
AGAGAGAGAGTTCCCTGGTC+AGG + chr3_4:34030237-34030256 Msa0498250:CDS 55.0%
! CACCGACTATGGTTCACCTG+AGG + chr3_4:34030336-34030355 Msa0498250:CDS 55.0%
AGGCTCAAGCTGGAGACAAG+AGG + chr3_4:34031535-34031554 Msa0498250:CDS 55.0%
CTCAAGCTGGAGACAAGAGG+TGG + chr3_4:34031538-34031557 Msa0498250:CDS 55.0%
!! CTCCTTGGTGCTGCTGCTGT+TGG + chr3_4:34029340-34029359 Msa0498250:CDS 60.0%
AGCCAACAGCAGCAGCACCA+AGG - chr3_4:34029345-34029364 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 34028951 34031995 34028951 ID=Msa0498250;Name=Msa0498250
chr3_4 mRNA 34028951 34031995 34028951 ID=Msa0498250-mRNA-1;Parent=Msa0498250;Name=Msa0498250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=212|1|1|1|0.75|0.6|5|317|261
chr3_4 exon 34028951 34029403 34028951 ID=Msa0498250-mRNA-1:exon:7216;Parent=Msa0498250-mRNA-1
chr3_4 exon 34030140 34030372 34030140 ID=Msa0498250-mRNA-1:exon:7217;Parent=Msa0498250-mRNA-1
chr3_4 exon 34030951 34031001 34030951 ID=Msa0498250-mRNA-1:exon:7218;Parent=Msa0498250-mRNA-1
chr3_4 exon 34031357 34031859 34031357 ID=Msa0498250-mRNA-1:exon:7219;Parent=Msa0498250-mRNA-1
chr3_4 exon 34031921 34031995 34031921 ID=Msa0498250-mRNA-1:exon:7220;Parent=Msa0498250-mRNA-1
chr3_4 five_prime_UTR 34028951 34029162 34028951 ID=Msa0498250-mRNA-1:five_prime_utr;Parent=Msa0498250-mRNA-1
chr3_4 CDS 34029163 34029403 34029163 ID=Msa0498250-mRNA-1:cds;Parent=Msa0498250-mRNA-1
chr3_4 CDS 34030140 34030372 34030140 ID=Msa0498250-mRNA-1:cds;Parent=Msa0498250-mRNA-1
chr3_4 CDS 34030951 34031001 34030951 ID=Msa0498250-mRNA-1:cds;Parent=Msa0498250-mRNA-1
chr3_4 CDS 34031357 34031617 34031357 ID=Msa0498250-mRNA-1:cds;Parent=Msa0498250-mRNA-1
chr3_4 three_prime_UTR 34031618 34031859 34031618 ID=Msa0498250-mRNA-1:three_prime_utr;Parent=Msa0498250-mRNA-1
chr3_4 three_prime_UTR 34031921 34031995 34031921 ID=Msa0498250-mRNA-1:three_prime_utr;Parent=Msa0498250-mRNA-1
Gene Sequence

>Msa0498250

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGCCAAATTGTTACCAACAGACCAAACCATATTGTTTGCAAGGCACAGAAACAAGAAGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAAGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCATACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCACCTGAGGAGTTCCTATCTAAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATTCAGAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGAAAGCACCAGCTGATTACAGCAACTGTAAATGATGGAAAGCTATACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAGTTTGTTGAGGACACTGCAAGTTCTTTCAGTGTTGCCTAA

Protein sequence

>Msa0498250

MASTQCFLHPQYALTTPSRSLSQRQIVTNRPNHIVCKAQKQEVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA*