AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185770 MtrunA17_Chr8g0345861 90.588 85 8 0 2 86 55 139 1.79e-52 162
Msa0185770 MtrunA17_Chr7g0276381 56.481 108 33 2 3 96 51 158 2.22e-31 108
Msa0185770 MtrunA17_Chr4g0004811 49.091 55 28 0 31 85 61 115 2.05e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185770 AT2G46820.2 62.000 100 32 1 3 96 54 153 2.56e-27 99.0
Msa0185770 AT2G46820.1 62.000 100 32 1 3 96 54 153 2.56e-27 99.0
Msa0185770 AT1G52220.4 39.506 81 46 2 9 89 52 129 1.11e-11 57.8
Msa0185770 AT4G01150.1 33.750 80 53 0 7 86 54 133 1.48e-11 58.2

Find 45 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCACCTATCAGCTTAAA+TGG 0.216366 1_4:+76553952 None:intergenic
CCTGGAGTTCTTGAGTTAAT+AGG 0.246781 1_4:-76554130 Msa0185770:CDS
CCCTGCAAATATCGCGTATT+TGG 0.254699 1_4:-76554049 Msa0185770:CDS
GGATGACCTTATAGAAGATA+TGG 0.334538 1_4:-76553723 Msa0185770:three_prime_UTR
ACCAAATACGCGATATTTGC+AGG 0.338699 1_4:+76554048 None:intergenic
TTACAAATTGATAAGATTAG+AGG 0.340323 1_4:-76553638 Msa0185770:three_prime_UTR
GATAGACTTCCTTTGATTCC+TGG 0.345188 1_4:-76554148 Msa0185770:CDS
GTTCTTGAGTTAATAGGAAT+TGG 0.346748 1_4:-76554124 Msa0185770:CDS
AAGAAAACCCTAGAAATTAC+TGG 0.372173 1_4:+76553554 None:intergenic
GTCATCCCATATCTTCTATA+AGG 0.393009 1_4:+76553717 None:intergenic
TCTAATCTTATCAATTTGTA+AGG 0.400180 1_4:+76553640 None:intergenic
TGGTGCATTGACATATAGAT+AGG 0.400882 1_4:-76553746 Msa0185770:three_prime_UTR
AATATCGGACTCTATCTATA+AGG 0.408677 1_4:+76553695 None:intergenic
GATATACATGGTTGATGGTC+AGG 0.413657 1_4:-76553808 Msa0185770:three_prime_UTR
AAAGATTGCTCGTGATGTTA+TGG 0.420998 1_4:-76554546 Msa0185770:CDS
TAGCTAGTGTATTTGCACTA+TGG 0.434144 1_4:-76554300 Msa0185770:CDS
CCGGGTCCATTTAAGCTGAT+AGG 0.438510 1_4:-76553958 Msa0185770:three_prime_UTR
TGCATCAAGTGAAATAATGT+TGG 0.448853 1_4:+76553833 None:intergenic
GATGTTATGGTAATGGCAAC+AGG 0.459632 1_4:-76554533 Msa0185770:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 1_4:-76554289 Msa0185770:CDS
GCATCAAGTGAAATAATGTT+GGG 0.472689 1_4:+76553834 None:intergenic
TCAGTTGATTCAACTTCTGT+TGG 0.480966 1_4:+76554503 None:intergenic
TGAAGATTCTTAACAAACTC+AGG 0.486308 1_4:+76554476 None:intergenic
GCATTGATATACATGGTTGA+TGG 0.499691 1_4:-76553786 Msa0185770:three_prime_UTR
TAAATATGCAGTGGGTTCAT+TGG 0.505381 1_4:-76554326 Msa0185770:CDS
CCTATTAACTCAAGAACTCC+AGG 0.507872 1_4:+76554130 None:intergenic
CCTATCAGCTTAAATGGACC+CGG 0.513699 1_4:+76553958 None:intergenic
GATGACCTTATAGAAGATAT+GGG 0.519246 1_4:-76553722 Msa0185770:three_prime_UTR
TTAATAGGAATTGGTTACAC+TGG 0.524822 1_4:-76554115 Msa0185770:CDS
GGTGCATTGACATATAGATA+GGG 0.536163 1_4:-76553745 Msa0185770:three_prime_UTR
TAATAGGAATTGGTTACACT+GGG 0.540472 1_4:-76554114 Msa0185770:CDS
TCAAGAACTCCAGGAATCAA+AGG 0.544788 1_4:+76554139 None:intergenic
CTTAGATTTAAATATATGAC+TGG 0.551593 1_4:-76554073 Msa0185770:CDS
ACTTGATGCATTGATATACA+TGG 0.554350 1_4:-76553820 Msa0185770:three_prime_UTR
TGCTCGTGATGTTATGGTAA+TGG 0.557462 1_4:-76554540 Msa0185770:CDS
TTTGATGATAAATATGCAGT+GGG 0.562064 1_4:-76554334 Msa0185770:CDS
ATTTGATGATAAATATGCAG+TGG 0.570116 1_4:-76554335 Msa0185770:CDS
GCATTGATATACATGGTTGA+TGG 0.575015 1_4:-76553813 Msa0185770:three_prime_UTR
TGGTCAAATACTATTGTGCT+TGG 0.604863 1_4:-76553766 Msa0185770:three_prime_UTR
TGGTCAGGCATTGATATACA+TGG 0.611000 1_4:-76553793 Msa0185770:three_prime_UTR
GTGCATTGACATATAGATAG+GGG 0.628973 1_4:-76553744 Msa0185770:three_prime_UTR
GGTCCATTTAAGCTGATAGG+TGG 0.648693 1_4:-76553955 Msa0185770:three_prime_UTR
CTATCAGCTTAAATGGACCC+GGG 0.651243 1_4:+76553959 None:intergenic
CCAAATACGCGATATTTGCA+GGG 0.651865 1_4:+76554049 None:intergenic
AATAGGAATTGGTTACACTG+GGG 0.760636 1_4:-76554113 Msa0185770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAACATAATTCT+AGG + chr1_4:76554034-76554053 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - chr1_4:76554036-76554055 Msa0185770:exon 10.0%
!! TATTTCAAAAAAAAAATACA+AGG + chr1_4:76554395-76554414 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG + chr1_4:76554733-76554752 None:intergenic 10.0%
!! AAAATAAATAACATAATTCT+AGG + chr1_4:76554034-76554053 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - chr1_4:76554036-76554055 Msa0185770:exon 10.0%
!! TATTTCAAAAAAAAAATACA+AGG + chr1_4:76554395-76554414 None:intergenic 10.0%
!! ATAAAAATGTATTACAATAT+CGG + chr1_4:76554733-76554752 None:intergenic 10.0%
!! TCAATAATAAACATTAAGAA+GGG + chr1_4:76554011-76554030 None:intergenic 15.0%
!! TCAATAATAAACATTAAGAA+GGG + chr1_4:76554011-76554030 None:intergenic 15.0%
!! GTCAATAATAAACATTAAGA+AGG + chr1_4:76554012-76554031 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG - chr1_4:76554337-76554356 Msa0185770:CDS 20.0%
!!! TGTTTTTTTAAAATGATTCC+CGG - chr1_4:76554433-76554452 Msa0185770:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + chr1_4:76554773-76554792 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - chr1_4:76554772-76554791 Msa0185770:intron 20.0%
!! GTCAATAATAAACATTAAGA+AGG + chr1_4:76554012-76554031 None:intergenic 20.0%
!! CTTAGATTTAAATATATGAC+TGG - chr1_4:76554337-76554356 Msa0185770:CDS 20.0%
!!! TGTTTTTTTAAAATGATTCC+CGG - chr1_4:76554433-76554452 Msa0185770:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + chr1_4:76554773-76554792 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - chr1_4:76554772-76554791 Msa0185770:intron 20.0%
! AACTATTGATGAAGATTAGA+CGG - chr1_4:76553667-76553686 Msa0185770:three_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + chr1_4:76553775-76553794 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG - chr1_4:76553788-76553807 Msa0185770:three_prime_UTR 25.0%
! ATAATACTAACTTTCTTCCT+AGG + chr1_4:76553824-76553843 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - chr1_4:76553974-76553993 Msa0185770:three_prime_UTR 25.0%
!! ATTTGATGATAAATATGCAG+TGG - chr1_4:76554075-76554094 Msa0185770:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG - chr1_4:76554076-76554095 Msa0185770:CDS 25.0%
!!! GTTTTTTTAAAATGATTCCC+GGG - chr1_4:76554434-76554453 Msa0185770:intron 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG - chr1_4:76554848-76554867 Msa0185770:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG - chr1_4:76554849-76554868 Msa0185770:intron 25.0%
! AACTATTGATGAAGATTAGA+CGG - chr1_4:76553667-76553686 Msa0185770:three_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + chr1_4:76553775-76553794 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG - chr1_4:76553788-76553807 Msa0185770:three_prime_UTR 25.0%
! ATAATACTAACTTTCTTCCT+AGG + chr1_4:76553824-76553843 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - chr1_4:76553974-76553993 Msa0185770:three_prime_UTR 25.0%
!! ATTTGATGATAAATATGCAG+TGG - chr1_4:76554075-76554094 Msa0185770:CDS 25.0%
!! TTTGATGATAAATATGCAGT+GGG - chr1_4:76554076-76554095 Msa0185770:CDS 25.0%
!!! GTTTTTTTAAAATGATTCCC+GGG - chr1_4:76554434-76554453 Msa0185770:intron 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG - chr1_4:76554848-76554867 Msa0185770:intron 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG - chr1_4:76554849-76554868 Msa0185770:intron 25.0%
GAAGAAGTAAGCAATATAGA+TGG + chr1_4:76553786-76553805 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG - chr1_4:76553787-76553806 Msa0185770:three_prime_UTR 30.0%
TGAAGATTCTTAACAAACTC+AGG + chr1_4:76553937-76553956 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - chr1_4:76554047-76554066 Msa0185770:CDS 30.0%
! TATTTTGTTGGCATCATAGT+GGG - chr1_4:76554048-76554067 Msa0185770:CDS 30.0%
CAATTACTTTCACTTGTAAC+AGG - chr1_4:76554234-76554253 Msa0185770:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - chr1_4:76554286-76554305 Msa0185770:CDS 30.0%
TTAATAGGAATTGGTTACAC+TGG - chr1_4:76554295-76554314 Msa0185770:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG - chr1_4:76554296-76554315 Msa0185770:CDS 30.0%
GCATCAAGTGAAATAATGTT+GGG + chr1_4:76554579-76554598 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + chr1_4:76554580-76554599 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG - chr1_4:76554590-76554609 Msa0185770:intron 30.0%
GATGACCTTATAGAAGATAT+GGG - chr1_4:76554688-76554707 Msa0185770:intron 30.0%
AATATCGGACTCTATCTATA+AGG + chr1_4:76554718-76554737 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + chr1_4:76554859-76554878 None:intergenic 30.0%
GAAGAAGTAAGCAATATAGA+TGG + chr1_4:76553786-76553805 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG - chr1_4:76553787-76553806 Msa0185770:three_prime_UTR 30.0%
TGAAGATTCTTAACAAACTC+AGG + chr1_4:76553937-76553956 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - chr1_4:76554047-76554066 Msa0185770:CDS 30.0%
! TATTTTGTTGGCATCATAGT+GGG - chr1_4:76554048-76554067 Msa0185770:CDS 30.0%
CAATTACTTTCACTTGTAAC+AGG - chr1_4:76554234-76554253 Msa0185770:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - chr1_4:76554286-76554305 Msa0185770:CDS 30.0%
TTAATAGGAATTGGTTACAC+TGG - chr1_4:76554295-76554314 Msa0185770:CDS 30.0%
TAATAGGAATTGGTTACACT+GGG - chr1_4:76554296-76554315 Msa0185770:CDS 30.0%
GCATCAAGTGAAATAATGTT+GGG + chr1_4:76554579-76554598 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + chr1_4:76554580-76554599 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG - chr1_4:76554590-76554609 Msa0185770:intron 30.0%
GATGACCTTATAGAAGATAT+GGG - chr1_4:76554688-76554707 Msa0185770:intron 30.0%
AATATCGGACTCTATCTATA+AGG + chr1_4:76554718-76554737 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + chr1_4:76554859-76554878 None:intergenic 30.0%
!! CATGATTCTGAGACAACAAA+GGG + chr1_4:76553583-76553602 None:intergenic 35.0%
TCAACTACACTTACAATGAG+TGG + chr1_4:76553615-76553634 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + chr1_4:76553733-76553752 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG + chr1_4:76553766-76553785 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG - chr1_4:76553864-76553883 Msa0185770:three_prime_UTR 35.0%
! TCAGTTGATTCAACTTCTGT+TGG + chr1_4:76553910-76553929 None:intergenic 35.0%
CAAGAAGCTGTATGATACAT+AGG - chr1_4:76553955-76553974 Msa0185770:three_prime_UTR 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - chr1_4:76554084-76554103 Msa0185770:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG - chr1_4:76554110-76554129 Msa0185770:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG - chr1_4:76554297-76554316 Msa0185770:CDS 35.0%
! GCATTGATATACATGGTTGA+TGG - chr1_4:76554597-76554616 Msa0185770:intron 35.0%
! GCATTGATATACATGGTTGA+TGG - chr1_4:76554597-76554616 Msa0185770:intron 35.0%
TGGTCAAATACTATTGTGCT+TGG - chr1_4:76554644-76554663 Msa0185770:intron 35.0%
! TGGTGCATTGACATATAGAT+AGG - chr1_4:76554664-76554683 Msa0185770:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - chr1_4:76554665-76554684 Msa0185770:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - chr1_4:76554666-76554685 Msa0185770:intron 35.0%
GGATGACCTTATAGAAGATA+TGG - chr1_4:76554687-76554706 Msa0185770:intron 35.0%
GTCATCCCATATCTTCTATA+AGG + chr1_4:76554696-76554715 None:intergenic 35.0%
!! CATGATTCTGAGACAACAAA+GGG + chr1_4:76553583-76553602 None:intergenic 35.0%
TCAACTACACTTACAATGAG+TGG + chr1_4:76553615-76553634 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + chr1_4:76553733-76553752 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG + chr1_4:76553766-76553785 None:intergenic 35.0%
AAAGATTGCTCGTGATGTTA+TGG - chr1_4:76553864-76553883 Msa0185770:three_prime_UTR 35.0%
! TCAGTTGATTCAACTTCTGT+TGG + chr1_4:76553910-76553929 None:intergenic 35.0%
CAAGAAGCTGTATGATACAT+AGG - chr1_4:76553955-76553974 Msa0185770:three_prime_UTR 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - chr1_4:76554084-76554103 Msa0185770:CDS 35.0%
TAGCTAGTGTATTTGCACTA+TGG - chr1_4:76554110-76554129 Msa0185770:CDS 35.0%
AATAGGAATTGGTTACACTG+GGG - chr1_4:76554297-76554316 Msa0185770:CDS 35.0%
! GCATTGATATACATGGTTGA+TGG - chr1_4:76554597-76554616 Msa0185770:intron 35.0%
! GCATTGATATACATGGTTGA+TGG - chr1_4:76554597-76554616 Msa0185770:intron 35.0%
TGGTCAAATACTATTGTGCT+TGG - chr1_4:76554644-76554663 Msa0185770:intron 35.0%
! TGGTGCATTGACATATAGAT+AGG - chr1_4:76554664-76554683 Msa0185770:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - chr1_4:76554665-76554684 Msa0185770:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - chr1_4:76554666-76554685 Msa0185770:intron 35.0%
GGATGACCTTATAGAAGATA+TGG - chr1_4:76554687-76554706 Msa0185770:intron 35.0%
GTCATCCCATATCTTCTATA+AGG + chr1_4:76554696-76554715 None:intergenic 35.0%
!! GCATGATTCTGAGACAACAA+AGG + chr1_4:76553584-76553603 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG + chr1_4:76553751-76553770 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG - chr1_4:76553804-76553823 Msa0185770:three_prime_UTR 40.0%
TGCTCGTGATGTTATGGTAA+TGG - chr1_4:76553870-76553889 Msa0185770:three_prime_UTR 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - chr1_4:76553877-76553896 Msa0185770:three_prime_UTR 40.0%
GATAGACTTCCTTTGATTCC+TGG - chr1_4:76554262-76554281 Msa0185770:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG + chr1_4:76554274-76554293 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + chr1_4:76554283-76554302 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - chr1_4:76554280-76554299 Msa0185770:CDS 40.0%
CCAAATACGCGATATTTGCA+GGG + chr1_4:76554364-76554383 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG + chr1_4:76554365-76554384 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG - chr1_4:76554602-76554621 Msa0185770:intron 40.0%
!! TGGTCAGGCATTGATATACA+TGG - chr1_4:76554617-76554636 Msa0185770:intron 40.0%
!! GCATGATTCTGAGACAACAA+AGG + chr1_4:76553584-76553603 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG + chr1_4:76553751-76553770 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG - chr1_4:76553804-76553823 Msa0185770:three_prime_UTR 40.0%
TGCTCGTGATGTTATGGTAA+TGG - chr1_4:76553870-76553889 Msa0185770:three_prime_UTR 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - chr1_4:76553877-76553896 Msa0185770:three_prime_UTR 40.0%
GATAGACTTCCTTTGATTCC+TGG - chr1_4:76554262-76554281 Msa0185770:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG + chr1_4:76554274-76554293 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + chr1_4:76554283-76554302 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - chr1_4:76554280-76554299 Msa0185770:CDS 40.0%
CCAAATACGCGATATTTGCA+GGG + chr1_4:76554364-76554383 None:intergenic 40.0%
ACCAAATACGCGATATTTGC+AGG + chr1_4:76554365-76554384 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG - chr1_4:76554602-76554621 Msa0185770:intron 40.0%
!! TGGTCAGGCATTGATATACA+TGG - chr1_4:76554617-76554636 Msa0185770:intron 40.0%
TGAGACAACAAAGGGAGTGA+TGG + chr1_4:76553575-76553594 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - chr1_4:76554132-76554151 Msa0185770:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG - chr1_4:76554361-76554380 Msa0185770:intron 45.0%
CTATCAGCTTAAATGGACCC+GGG + chr1_4:76554454-76554473 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG + chr1_4:76554455-76554474 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG - chr1_4:76554455-76554474 Msa0185770:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG + chr1_4:76554461-76554480 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG + chr1_4:76553575-76553594 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - chr1_4:76554132-76554151 Msa0185770:CDS 45.0%
CCCTGCAAATATCGCGTATT+TGG - chr1_4:76554361-76554380 Msa0185770:intron 45.0%
CTATCAGCTTAAATGGACCC+GGG + chr1_4:76554454-76554473 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+CGG + chr1_4:76554455-76554474 None:intergenic 45.0%
GGTCCATTTAAGCTGATAGG+TGG - chr1_4:76554455-76554474 Msa0185770:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG + chr1_4:76554461-76554480 None:intergenic 45.0%
! GGAGTGATGGAAGTGTGGAA+AGG + chr1_4:76553562-76553581 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + chr1_4:76553567-76553586 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG - chr1_4:76554121-76554140 Msa0185770:CDS 50.0%
CCGGGTCCATTTAAGCTGAT+AGG - chr1_4:76554452-76554471 Msa0185770:intron 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG + chr1_4:76553562-76553581 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + chr1_4:76553567-76553586 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG - chr1_4:76554121-76554140 Msa0185770:CDS 50.0%
CCGGGTCCATTTAAGCTGAT+AGG - chr1_4:76554452-76554471 Msa0185770:intron 50.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 76553550 76554882 76553550 ID=Msa0185770;Name=Msa0185770
chr1_4 mRNA 76553550 76554882 76553550 ID=Msa0185770-mRNA-1;Parent=Msa0185770;Name=Msa0185770-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0.66|0.75|1|0.66|0.75|4|492|109
chr1_4 exon 76553550 76554176 76553550 ID=Msa0185770-mRNA-1:exon:26017;Parent=Msa0185770-mRNA-1
chr1_4 exon 76554279 76554365 76554279 ID=Msa0185770-mRNA-1:exon:26016;Parent=Msa0185770-mRNA-1
chr1_4 exon 76554469 76554572 76554469 ID=Msa0185770-mRNA-1:exon:26015;Parent=Msa0185770-mRNA-1
chr1_4 exon 76554879 76554882 76554879 ID=Msa0185770-mRNA-1:exon:26014;Parent=Msa0185770-mRNA-1
chr1_4 CDS 76554879 76554882 76554879 ID=Msa0185770-mRNA-1:cds;Parent=Msa0185770-mRNA-1
chr1_4 CDS 76554469 76554572 76554469 ID=Msa0185770-mRNA-1:cds;Parent=Msa0185770-mRNA-1
chr1_4 CDS 76554279 76554365 76554279 ID=Msa0185770-mRNA-1:cds;Parent=Msa0185770-mRNA-1
chr1_4 CDS 76554042 76554176 76554042 ID=Msa0185770-mRNA-1:cds;Parent=Msa0185770-mRNA-1
chr1_4 three_prime_UTR 76553550 76554041 76553550 ID=Msa0185770-mRNA-1:three_prime_utr;Parent=Msa0185770-mRNA-1
Gene Sequence

>Msa0185770

ATGTATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGAATCAACTGAACTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTTGGGACAAATTTGATGATAAATATGCAGTGGGTTCATTGGTTGTAGCTAGTGTATTTGCACTATGGAGCTCAGCTGGTTTTATCTCGGCAATTGATAGACTTCCTTTGATTCCTGGAGTTCTTGAGTTAATAGGAATTGGTTACACTGGGGTAAGTCAAATAAATACACTTAGATTTAAATATATGACTGGTCCCTGCAAATATCGCGTATTTGGTTTTTAG

Protein sequence

>Msa0185770

MYRKIARDVMVMATGDAPTEVESTELPEFVKNLQEAWDKFDDKYAVGSLVVASVFALWSSAGFISAIDRLPLIPGVLELIGIGYTGVSQINTLRFKYMTGPCKYRVFGF*