AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866320 MtrunA17_Chr5g0422401 71.707 205 8 2 13 167 2 206 4.56e-84 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866320 AT1G26090.1 47.291 203 49 4 22 169 27 226 2.31e-45 155

Find 109 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTTCTGTCTTGGAATT+TGG 0.162457 5_4:+67863596 None:intergenic
CAAGCTGGTGCTCAAGTTTC+AGG 0.173599 5_4:-67865796 Msa0866320:three_prime_UTR
CTTTCGAATGATTCTGGTTT+TGG 0.183397 5_4:+67865748 None:intergenic
CAATTCTGCATTACGTTATT+GGG 0.192768 5_4:-67865830 Msa0866320:three_prime_UTR
TTCTCAAATCCACAGAAATT+TGG 0.216274 5_4:-67865892 Msa0866320:three_prime_UTR
TCAATTCTGCATTACGTTAT+TGG 0.222888 5_4:-67865831 Msa0866320:three_prime_UTR
TTTGCTCTTTCGAATGATTC+TGG 0.223719 5_4:+67865742 None:intergenic
GCTCAAGTTTCAGGCGCTTT+TGG 0.247175 5_4:-67865787 Msa0866320:three_prime_UTR
AACTGATGATGTCATATTAC+TGG 0.259593 5_4:+67865585 None:intergenic
TTGACAGAGGTTGGATTGTT+AGG 0.266572 5_4:+67865850 None:intergenic
TTAATAATCCTCAGCATAAA+AGG 0.279276 5_4:+67863525 None:intergenic
GAGGAGCTTGGCATCCTTCC+TGG 0.297777 5_4:-67866502 Msa0866320:CDS
GGACACTTTGGATCAAATTC+TGG 0.320988 5_4:-67866094 Msa0866320:three_prime_UTR
TGTTCGAACAAAACCCCTTT+TGG 0.329376 5_4:-67867276 Msa0866320:CDS
CTTGCACTTGAGAGGCTTGT+AGG 0.332180 5_4:-67866457 Msa0866320:CDS
TTGGCTGAGAAAACTGAAAT+TGG 0.346531 5_4:-67866216 Msa0866320:three_prime_UTR
TCGATTGGGCTATTTACTAA+TGG 0.357529 5_4:+67865679 None:intergenic
AATTTCGAGCTTCACATTTC+CGG 0.370043 5_4:-67867318 Msa0866320:CDS
ATTTGATGTCATAAGAAAAT+CGG 0.374741 5_4:-67865560 Msa0866320:three_prime_UTR
TAGGGGAGGATCTGAGCTTT+TGG 0.374945 5_4:-67863685 Msa0866320:three_prime_UTR
GAGGCGTTTAAGATTAGCTT+TGG 0.376524 5_4:-67867354 Msa0866320:CDS
GAAAAGATTGAATCCATTCC+AGG 0.386011 5_4:+67866484 None:intergenic
CTGTACATTTGTGCATGAAT+TGG 0.392123 5_4:-67863476 Msa0866320:three_prime_UTR
AGCAGCAGATCTTATTTCAA+TGG 0.400613 5_4:-67866138 Msa0866320:three_prime_UTR
AAAACATTGTTCCAATCGAT+TGG 0.414883 5_4:+67865664 None:intergenic
GAAGCAGTAAAGCAAGGTTT+TGG 0.422646 5_4:-67866336 Msa0866320:CDS
CGCCGCTATCTTCGCCGCTC+AGG 0.428635 5_4:-67867168 Msa0866320:intron
AAGATTAGCTTTGGATTGGA+TGG 0.430982 5_4:-67867345 Msa0866320:CDS
TTTCTCGGCAAAGGTGGCTC+TGG 0.432097 5_4:-67867200 Msa0866320:CDS
CCTTGAATTTCTTGAGGCAA+AGG 0.436195 5_4:+67863633 None:intergenic
GAAAACTGAAATTGGTAGAT+TGG 0.441363 5_4:-67866208 Msa0866320:three_prime_UTR
CTTGAATTTCTTGAGGCAAA+GGG 0.442218 5_4:+67863634 None:intergenic
GCTGAGGATTATTAATGTTA+CGG 0.443193 5_4:-67863517 Msa0866320:three_prime_UTR
TCTTGTTGACTCTTTGAAGA+TGG 0.447145 5_4:+67866421 None:intergenic
CGAGGAAACCTTGAGAATCA+TGG 0.447952 5_4:-67866362 Msa0866320:CDS
TAATTACAAGACTTCTGTCT+TGG 0.456853 5_4:+67863589 None:intergenic
TGCCTTGAGTCATATTAAGC+TGG 0.456940 5_4:+67866681 None:intergenic
TTGCACTTGAGAGGCTTGTA+GGG 0.463616 5_4:-67866456 Msa0866320:CDS
TTCAGAAACATGGGACACTT+TGG 0.465064 5_4:-67866106 Msa0866320:three_prime_UTR
AGAAGAAGACACTGCCAAAA+GGG 0.468798 5_4:+67867262 None:intergenic
GCAGCAGATCTTATTTCAAT+GGG 0.474876 5_4:-67866137 Msa0866320:three_prime_UTR
AATGCAGAATTGACAGAGGT+TGG 0.475547 5_4:+67865841 None:intergenic
AAACATTGTTCCAATCGATT+GGG 0.477015 5_4:+67865665 None:intergenic
TCGGTTACTCTCTTCATGCC+AGG 0.479429 5_4:-67865541 Msa0866320:three_prime_UTR
GCTTGGCATCCTTCCTGGAA+TGG 0.479876 5_4:-67866497 Msa0866320:CDS
TGGCTTCATCCACAAGTCTC+AGG 0.482093 5_4:+67866172 None:intergenic
GAAGTTGAACGACAAAGAAC+CGG 0.483634 5_4:+67867299 None:intergenic
GCCTCAAGAAATTCAAGGAA+AGG 0.484187 5_4:-67863628 Msa0866320:three_prime_UTR
CCTTTGCCTCAAGAAATTCA+AGG 0.489134 5_4:-67863633 Msa0866320:three_prime_UTR
GATGACACGCCTTTGATCTC+CGG 0.493928 5_4:+67863656 None:intergenic
TGTGCCATATAATAGATTGT+CGG 0.495097 5_4:-67866526 Msa0866320:intron
AAGAAGAAGACACTGCCAAA+AGG 0.495604 5_4:+67867261 None:intergenic
ATCTCTGATTTGTCAAAACC+TGG 0.497549 5_4:+67865523 None:intergenic
GTTTAAGATTAGCTTTGGAT+TGG 0.499217 5_4:-67867349 Msa0866320:CDS
AGCGGCGAAGATAGCGGCGG+TGG 0.504443 5_4:+67867172 None:intergenic
ATGATGTCATATTACTGGAT+TGG 0.518193 5_4:+67865590 None:intergenic
TGAGATGAAAGCAGAAGGCA+AGG 0.520256 5_4:+67865705 None:intergenic
AGATTAGCTTTGGATTGGAT+GGG 0.521247 5_4:-67867344 Msa0866320:CDS
ATGACTCAAGGCACACTTGG+AGG 0.523642 5_4:-67866671 Msa0866320:CDS
CCTCAGCATAAAAGGTGAGA+AGG 0.525519 5_4:+67863533 None:intergenic
TAGATTGTCGGAGAGGAGCT+TGG 0.527913 5_4:-67866514 Msa0866320:CDS
TCCTTCACTCCTGAGACTTG+TGG 0.529663 5_4:-67866181 Msa0866320:three_prime_UTR
TTAAAATAAATGCAGTATAG+GGG 0.532352 5_4:-67863702 Msa0866320:intron
AATTCTGCATTACGTTATTG+GGG 0.532431 5_4:-67865829 Msa0866320:three_prime_UTR
ACCTTTCCTTGAATTTCTTG+AGG 0.534279 5_4:+67863627 None:intergenic
CAAGAAATTCAAGGAAAGGT+TGG 0.534618 5_4:-67863624 Msa0866320:three_prime_UTR
TTTCGGTACTTGCACTTGAG+AGG 0.545250 5_4:-67866465 Msa0866320:CDS
TGGTAGAAGCCGGAGATCAA+AGG 0.547294 5_4:-67863665 Msa0866320:three_prime_UTR
ATTTGGTTGCCTCCTTGTGA+TGG 0.549573 5_4:-67865875 Msa0866320:three_prime_UTR
TTTAGTTGAAGCAACATCCT+CGG 0.550886 5_4:+67867232 None:intergenic
GATTATTAATGTTACGGCAG+TGG 0.555143 5_4:-67863511 Msa0866320:three_prime_UTR
TTTGACGTAATAATATATGA+TGG 0.555790 5_4:-67866394 Msa0866320:CDS
TATTAATGTTACGGCAGTGG+TGG 0.560519 5_4:-67863508 Msa0866320:three_prime_UTR
TAGTAAATAGCCCAATCGAT+TGG 0.561225 5_4:-67865675 Msa0866320:three_prime_UTR
TGACTCAAGGCACACTTGGA+GGG 0.565824 5_4:-67866670 Msa0866320:CDS
GAGGAAACCTTGAGAATCAT+GGG 0.567213 5_4:-67866361 Msa0866320:CDS
CTCAGCATAAAAGGTGAGAA+GGG 0.570816 5_4:+67863534 None:intergenic
GCCTTGAGTCATATTAAGCT+GGG 0.571410 5_4:+67866682 None:intergenic
GGAGGATGAGTTCAGAAACA+TGG 0.573634 5_4:-67866116 Msa0866320:three_prime_UTR
GAAATTCAAGGAAAGGTTGG+CGG 0.573892 5_4:-67863621 Msa0866320:three_prime_UTR
TCCACAAGTCTCAGGAGTGA+AGG 0.574370 5_4:+67866180 None:intergenic
GCTTCCACCCATGATTCTCA+AGG 0.576164 5_4:+67866354 None:intergenic
GACTCAAGGCACACTTGGAG+GGG 0.579696 5_4:-67866669 Msa0866320:intron
AAATTTCTGTGGATTTGAGA+AGG 0.582017 5_4:+67865894 None:intergenic
AATATGACTCAAGGCACACT+TGG 0.591609 5_4:-67866674 Msa0866320:CDS
TTTAAAATATATCCGCACAT+TGG 0.592995 5_4:-67866235 Msa0866320:three_prime_UTR
ACACTGTGAATAAAGATGCT+AGG 0.598622 5_4:-67865636 Msa0866320:three_prime_UTR
GCCCAGCTTAATATGACTCA+AGG 0.605769 5_4:-67866683 Msa0866320:CDS
CACTTTGGATCAAATTCTGG+AGG 0.608227 5_4:-67866091 Msa0866320:intron
AGGAGGCAACCAAATTTCTG+TGG 0.612090 5_4:+67865883 None:intergenic
ATTCTGCATTACGTTATTGG+GGG 0.613562 5_4:-67865828 Msa0866320:three_prime_UTR
GCAGATCTTATTTCAATGGG+AGG 0.614942 5_4:-67866134 Msa0866320:three_prime_UTR
GAAGAAGACACTGCCAAAAG+GGG 0.622389 5_4:+67867263 None:intergenic
GGACTTGAGATGAAAGCAGA+AGG 0.626478 5_4:+67865700 None:intergenic
AAATAAATGCAGTATAGGGG+AGG 0.629069 5_4:-67863699 Msa0866320:intron
GAGGATGAGTTCAGAAACAT+GGG 0.643942 5_4:-67866115 Msa0866320:three_prime_UTR
TCAAACGAAAGAAAATGTCA+AGG 0.645004 5_4:+67866280 None:intergenic
CATATAATAGATTGTCGGAG+AGG 0.652359 5_4:-67866521 Msa0866320:intron
GAGATGAAAGCAGAAGGCAA+GGG 0.655584 5_4:+67865706 None:intergenic
GATTGTTAGGATCCATCACA+AGG 0.660209 5_4:+67865863 None:intergenic
TGGGTGGAAGCAGTAAAGCA+AGG 0.674055 5_4:-67866342 Msa0866320:CDS
AGATTGAATCCATTCCAGGA+AGG 0.674668 5_4:+67866488 None:intergenic
TACCTGAGCGGCGAAGATAG+CGG 0.683068 5_4:+67867166 None:intergenic
GAAACCTTGAGAATCATGGG+TGG 0.699723 5_4:-67866358 Msa0866320:CDS
CTGAGCGGCGAAGATAGCGG+CGG 0.708358 5_4:+67867169 None:intergenic
ACGTAATGCAGAATTGACAG+AGG 0.717466 5_4:+67865837 None:intergenic
TAAAGTTGTACGTACCTGAG+CGG 0.748110 5_4:+67867154 None:intergenic
TGTTAGGATCCATCACAAGG+AGG 0.756186 5_4:+67865866 None:intergenic
ATATGATGGTGTCAGCAGCG+AGG 0.762833 5_4:-67866380 Msa0866320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTCTTTTGTTTTTAT+GGG + chr5_4:67865531-67865550 None:intergenic 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG + chr5_4:67865532-67865551 None:intergenic 10.0%
!!! AATATTTCTTTTGTTTTTAT+GGG + chr5_4:67865531-67865550 None:intergenic 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG + chr5_4:67865532-67865551 None:intergenic 10.0%
!!! TTTTGTTTACATAAATAAAA+TGG - chr5_4:67865719-67865738 Msa0866320:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTTGTAGTT+TGG - chr5_4:67866640-67866659 Msa0866320:intron 10.0%
!!! TTTTCTATCTATATTTATGA+TGG - chr5_4:67864249-67864268 Msa0866320:intron 15.0%
!! TTTCTATCTATATTTATGAT+GGG - chr5_4:67864250-67864269 Msa0866320:intron 15.0%
!! AAACAAAAGAAATATTACTA+AGG - chr5_4:67865535-67865554 Msa0866320:three_prime_UTR 15.0%
!! AAACAAAAGAAATATTACTA+AGG - chr5_4:67865535-67865554 Msa0866320:three_prime_UTR 15.0%
!! AAATTTCTACTCAATAAATA+TGG + chr5_4:67866908-67866927 None:intergenic 15.0%
!!! TATTTATTGAGTAGAAATTT+TGG - chr5_4:67866908-67866927 Msa0866320:intron 15.0%
!!! TTTAAAATAAATGCAGTATA+GGG - chr5_4:67867164-67867183 Msa0866320:intron 15.0%
!! TTTGACGTAATAATATATGA+TGG - chr5_4:67864473-67864492 Msa0866320:intron 20.0%
!! ATTTGATGTCATAAGAAAAT+CGG - chr5_4:67865307-67865326 Msa0866320:intron 20.0%
!! AAATATAAAATGCATGAGAA+AGG + chr5_4:67865397-67865416 None:intergenic 20.0%
!! ATATTCTATGAGAAATAAGA+TGG - chr5_4:67865461-67865480 Msa0866320:intron 20.0%
!! ATATTCTATGAGAAATAAGA+TGG - chr5_4:67865461-67865480 Msa0866320:intron 20.0%
!!! ATATGTTTTTGTAAAATTCC+TGG - chr5_4:67865778-67865797 Msa0866320:three_prime_UTR 20.0%
!! AGTTAAGAAATTTATTTACC+AGG + chr5_4:67865799-67865818 None:intergenic 20.0%
!! AGATTCCCAAAATAAAAATA+TGG + chr5_4:67866697-67866716 None:intergenic 20.0%
!! TTTACATATTATTGTTCAAC+TGG - chr5_4:67866978-67866997 Msa0866320:intron 20.0%
!!! GTTTAAAATAAATGCAGTAT+AGG - chr5_4:67867163-67867182 Msa0866320:intron 20.0%
!! TTAAAATAAATGCAGTATAG+GGG - chr5_4:67867165-67867184 Msa0866320:intron 20.0%
! TGAATGAGTGTAAGTAAAAA+TGG - chr5_4:67863466-67863485 Msa0866320:three_prime_UTR 25.0%
!!! ACTAAATTACTCACTTTTCT+CGG - chr5_4:67863652-67863671 Msa0866320:three_prime_UTR 25.0%
!!! AATGATGATAGATTAGTCTT+GGG - chr5_4:67863743-67863762 Msa0866320:intron 25.0%
! ATTGCATAATATATGCTAGA+TGG - chr5_4:67863791-67863810 Msa0866320:intron 25.0%
! TTGCATAATATATGCTAGAT+GGG - chr5_4:67863792-67863811 Msa0866320:intron 25.0%
! TAGAAATTCACGTGAATAAA+TGG + chr5_4:67863835-67863854 None:intergenic 25.0%
! TATCTACTCAATTGTAAGAT+TGG - chr5_4:67863963-67863982 Msa0866320:intron 25.0%
!! GGAATTTATTCTTTTCATCA+AGG - chr5_4:67864271-67864290 Msa0866320:intron 25.0%
!! TTTAAAATATATCCGCACAT+TGG - chr5_4:67864632-67864651 Msa0866320:intron 25.0%
! AATAAGATGGTTCTTATCTT+TGG - chr5_4:67865474-67865493 Msa0866320:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG - chr5_4:67865491-67865510 Msa0866320:intron 25.0%
!! TCAATTCATCATTTTCTTCA+TGG - chr5_4:67865560-67865579 Msa0866320:three_prime_UTR 25.0%
! AATAAGATGGTTCTTATCTT+TGG - chr5_4:67865474-67865493 Msa0866320:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG - chr5_4:67865491-67865510 Msa0866320:intron 25.0%
!!! TTAACTTGCAAAATAGATGT+TGG - chr5_4:67865813-67865832 Msa0866320:three_prime_UTR 25.0%
! GTTAGTTAGAAGAAGATTAT+GGG - chr5_4:67865929-67865948 Msa0866320:intron 25.0%
! GACCTTAATATTATACTGTA+TGG - chr5_4:67866662-67866681 Msa0866320:intron 25.0%
! CTCCATACAGTATAATATTA+AGG + chr5_4:67866667-67866686 None:intergenic 25.0%
!!! TGCACTCCATATTTTTATTT+TGG - chr5_4:67866688-67866707 Msa0866320:CDS 25.0%
!!! GCACTCCATATTTTTATTTT+GGG - chr5_4:67866689-67866708 Msa0866320:CDS 25.0%
! TCATTAAAGATCAAATAGCT+TGG - chr5_4:67866943-67866962 Msa0866320:intron 25.0%
! TTAATAATCCTCAGCATAAA+AGG + chr5_4:67867345-67867364 None:intergenic 25.0%
TATATTGAATTGATGCAGTG+AGG - chr5_4:67863494-67863513 Msa0866320:three_prime_UTR 30.0%
!! GTTTAAGATTAGCTTTGGAT+TGG - chr5_4:67863518-67863537 Msa0866320:three_prime_UTR 30.0%
!! CAATGATGATAGATTAGTCT+TGG - chr5_4:67863742-67863761 Msa0866320:intron 30.0%
TGCATAATATATGCTAGATG+GGG - chr5_4:67863793-67863812 Msa0866320:intron 30.0%
ATATATATAGAGGGAGGAAA+TGG + chr5_4:67864062-67864081 None:intergenic 30.0%
CACAAGGTGATATATATAGA+GGG + chr5_4:67864071-67864090 None:intergenic 30.0%
ACACAAGGTGATATATATAG+AGG + chr5_4:67864072-67864091 None:intergenic 30.0%
TCGAAATCAAAATGTACACA+AGG + chr5_4:67864087-67864106 None:intergenic 30.0%
TCTATTATATGGCACAAAAG+AGG + chr5_4:67864337-67864356 None:intergenic 30.0%
TGTGCCATATAATAGATTGT+CGG - chr5_4:67864341-67864360 Msa0866320:intron 30.0%
!! TGGAATGGATTCAATCTTTT+CGG - chr5_4:67864385-67864404 Msa0866320:intron 30.0%
TCAAACGAAAGAAAATGTCA+AGG + chr5_4:67864590-67864609 None:intergenic 30.0%
! GTTTGATACTTCGATTTTGT+AGG - chr5_4:67864604-67864623 Msa0866320:intron 30.0%
GAAAACTGAAATTGGTAGAT+TGG - chr5_4:67864659-67864678 Msa0866320:intron 30.0%
!! TCTGCTGCTATTTATTTTCA+TGG + chr5_4:67864718-67864737 None:intergenic 30.0%
AAATTTCTGTGGATTTGAGA+AGG + chr5_4:67864976-67864995 None:intergenic 30.0%
TTCTCAAATCCACAGAAATT+TGG - chr5_4:67864975-67864994 Msa0866320:intron 30.0%
TCAATTCTGCATTACGTTAT+TGG - chr5_4:67865036-67865055 Msa0866320:intron 30.0%
CAATTCTGCATTACGTTATT+GGG - chr5_4:67865037-67865056 Msa0866320:intron 30.0%
AATTCTGCATTACGTTATTG+GGG - chr5_4:67865038-67865057 Msa0866320:intron 30.0%
AAACATTGTTCCAATCGATT+GGG + chr5_4:67865205-67865224 None:intergenic 30.0%
AAAACATTGTTCCAATCGAT+TGG + chr5_4:67865206-67865225 None:intergenic 30.0%
ATGATGTCATATTACTGGAT+TGG + chr5_4:67865280-67865299 None:intergenic 30.0%
! AACTGATGATGTCATATTAC+TGG + chr5_4:67865285-67865304 None:intergenic 30.0%
TATAAAATGCATGAGAAAGG+AGG + chr5_4:67865394-67865413 None:intergenic 30.0%
CCATGAAGAATATGGTAAAA+AGG + chr5_4:67865428-67865447 None:intergenic 30.0%
! CCTTTTTACCATATTCTTCA+TGG - chr5_4:67865425-67865444 Msa0866320:intron 30.0%
! GGTTAGTTAGAAGAAGATTA+TGG - chr5_4:67865928-67865947 Msa0866320:intron 30.0%
ATGGGACTGTTATAAATAGT+AGG - chr5_4:67865947-67865966 Msa0866320:intron 30.0%
GACTGTTATAAATAGTAGGA+GGG - chr5_4:67865951-67865970 Msa0866320:intron 30.0%
GGGATTGTATACCTAAATTA+GGG + chr5_4:67866171-67866190 None:intergenic 30.0%
ATCATGAGAGAATATTTGGT+GGG + chr5_4:67866192-67866211 None:intergenic 30.0%
AATCATGAGAGAATATTTGG+TGG + chr5_4:67866193-67866212 None:intergenic 30.0%
ACCAAATATTCTCTCATGAT+TGG - chr5_4:67866192-67866211 Msa0866320:three_prime_UTR 30.0%
! TTCAAGAGATCAGTATCTTT+TGG - chr5_4:67866451-67866470 Msa0866320:CDS 30.0%
AAAAGACCTACAGACTTAAA+GGG + chr5_4:67866621-67866640 None:intergenic 30.0%
AAAAAGACCTACAGACTTAA+AGG + chr5_4:67866622-67866641 None:intergenic 30.0%
! TGGGAATCTTTAATTTAGAG+TGG - chr5_4:67866708-67866727 Msa0866320:CDS 30.0%
! GGGAATCTTTAATTTAGAGT+GGG - chr5_4:67866709-67866728 Msa0866320:CDS 30.0%
TAATTACAAGACTTCTGTCT+TGG + chr5_4:67867281-67867300 None:intergenic 30.0%
GCTGAGGATTATTAATGTTA+CGG - chr5_4:67867350-67867369 Msa0866320:CDS 30.0%
!! AAGATTAGCTTTGGATTGGA+TGG - chr5_4:67863522-67863541 Msa0866320:three_prime_UTR 35.0%
!! AGATTAGCTTTGGATTGGAT+GGG - chr5_4:67863523-67863542 Msa0866320:three_prime_UTR 35.0%
AATTTCGAGCTTCACATTTC+CGG - chr5_4:67863549-67863568 Msa0866320:three_prime_UTR 35.0%
TTTAGTTGAAGCAACATCCT+CGG + chr5_4:67863638-67863657 None:intergenic 35.0%
! CACGTGAATTTCTAGACATT+AGG - chr5_4:67863841-67863860 Msa0866320:intron 35.0%
! CATGTTTCAGCATTTTGCAA+TGG - chr5_4:67863890-67863909 Msa0866320:intron 35.0%
AAGGTGATATATATAGAGGG+AGG + chr5_4:67864068-67864087 None:intergenic 35.0%
! TGCTTGCTTCAGAAGTTTTA+GGG + chr5_4:67864161-67864180 None:intergenic 35.0%
CTCTCCGACAATCTATTATA+TGG + chr5_4:67864348-67864367 None:intergenic 35.0%
CATATAATAGATTGTCGGAG+AGG - chr5_4:67864346-67864365 Msa0866320:intron 35.0%
GAAAAGATTGAATCCATTCC+AGG + chr5_4:67864386-67864405 None:intergenic 35.0%
!! TCTTGTTGACTCTTTGAAGA+TGG + chr5_4:67864449-67864468 None:intergenic 35.0%
TTGGCTGAGAAAACTGAAAT+TGG - chr5_4:67864651-67864670 Msa0866320:intron 35.0%
! AGCAGCAGATCTTATTTCAA+TGG - chr5_4:67864729-67864748 Msa0866320:intron 35.0%
! GCAGCAGATCTTATTTCAAT+GGG - chr5_4:67864730-67864749 Msa0866320:intron 35.0%
TGGCTACATAGATCAAATGA+CGG + chr5_4:67864850-67864869 None:intergenic 35.0%
TGATTATGTGTTGTCCAGAA+AGG - chr5_4:67864942-67864961 Msa0866320:intron 35.0%
ATTCTGCATTACGTTATTGG+GGG - chr5_4:67865039-67865058 Msa0866320:intron 35.0%
!!! CTTTCGAATGATTCTGGTTT+TGG + chr5_4:67865122-67865141 None:intergenic 35.0%
TTTGCTCTTTCGAATGATTC+TGG + chr5_4:67865128-67865147 None:intergenic 35.0%
TCGATTGGGCTATTTACTAA+TGG + chr5_4:67865191-67865210 None:intergenic 35.0%
TAGTAAATAGCCCAATCGAT+TGG - chr5_4:67865192-67865211 Msa0866320:intron 35.0%
! CGATTGGAACAATGTTTTAC+TGG - chr5_4:67865208-67865227 Msa0866320:intron 35.0%
ACACTGTGAATAAAGATGCT+AGG - chr5_4:67865231-67865250 Msa0866320:intron 35.0%
! ATCTCTGATTTGTCAAAACC+TGG + chr5_4:67865347-67865366 None:intergenic 35.0%
AATGAGTGCCATGAAGAATA+TGG + chr5_4:67865436-67865455 None:intergenic 35.0%
GGACTGTTATAAATAGTAGG+AGG - chr5_4:67865950-67865969 Msa0866320:intron 35.0%
TCCATCCTTTCTCCATTTAT+AGG - chr5_4:67866101-67866120 Msa0866320:three_prime_UTR 35.0%
GGGGATTGTATACCTAAATT+AGG + chr5_4:67866172-67866191 None:intergenic 35.0%
! TCATGAGAGAATATTTGGTG+GGG + chr5_4:67866191-67866210 None:intergenic 35.0%
GCCAATCATGAGAGAATATT+TGG + chr5_4:67866196-67866215 None:intergenic 35.0%
TCTCATGATTGGCAATGATT+AGG - chr5_4:67866203-67866222 Msa0866320:three_prime_UTR 35.0%
! TATGTTTGGTACTGAAGGTT+TGG + chr5_4:67866478-67866497 None:intergenic 35.0%
! TTCCTTTTAGGCTTGATACT+CGG + chr5_4:67866505-67866524 None:intergenic 35.0%
GTATCAAGCCTAAAAGGAAA+AGG - chr5_4:67866506-67866525 Msa0866320:CDS 35.0%
!! TTAGAGCACCTTTTCCTTTT+AGG + chr5_4:67866517-67866536 None:intergenic 35.0%
! TAATTTAGAGTGGGAGAGAA+TGG - chr5_4:67866718-67866737 Msa0866320:CDS 35.0%
CAATTTCTGTACTTCTCACA+TGG - chr5_4:67867077-67867096 Msa0866320:intron 35.0%
! CAAGTTTTTGCATTATGCTC+TGG - chr5_4:67867102-67867121 Msa0866320:intron 35.0%
AAATAAATGCAGTATAGGGG+AGG - chr5_4:67867168-67867187 Msa0866320:intron 35.0%
CTTGAATTTCTTGAGGCAAA+GGG + chr5_4:67867236-67867255 None:intergenic 35.0%
ACCTTTCCTTGAATTTCTTG+AGG + chr5_4:67867243-67867262 None:intergenic 35.0%
CAAGAAATTCAAGGAAAGGT+TGG - chr5_4:67867243-67867262 Msa0866320:CDS 35.0%
AAGACTTCTGTCTTGGAATT+TGG + chr5_4:67867274-67867293 None:intergenic 35.0%
GATTATTAATGTTACGGCAG+TGG - chr5_4:67867356-67867375 Msa0866320:CDS 35.0%
CTGTACATTTGTGCATGAAT+TGG - chr5_4:67867391-67867410 Msa0866320:intron 35.0%
!! GAGGCGTTTAAGATTAGCTT+TGG - chr5_4:67863513-67863532 Msa0866320:three_prime_UTR 40.0%
GAAGTTGAACGACAAAGAAC+CGG + chr5_4:67863571-67863590 None:intergenic 40.0%
! TGTTCGAACAAAACCCCTTT+TGG - chr5_4:67863591-67863610 Msa0866320:three_prime_UTR 40.0%
AGAAGAAGACACTGCCAAAA+GGG + chr5_4:67863608-67863627 None:intergenic 40.0%
AAGAAGAAGACACTGCCAAA+AGG + chr5_4:67863609-67863628 None:intergenic 40.0%
!! TTACTCACTTTTCTCGGCAA+AGG - chr5_4:67863658-67863677 Msa0866320:three_prime_UTR 40.0%
TAAAGTTGTACGTACCTGAG+CGG + chr5_4:67863716-67863735 None:intergenic 40.0%
! ACCTCCAATTTTCGTTGGAA+GGG - chr5_4:67863766-67863785 Msa0866320:intron 40.0%
ATGTCCCTTCCAACGAAAAT+TGG + chr5_4:67863773-67863792 None:intergenic 40.0%
CGTGAATAAATGGAGTGTAC+AGG + chr5_4:67863825-67863844 None:intergenic 40.0%
! TTTCAGCATTTTGCAATGGC+TGG - chr5_4:67863894-67863913 Msa0866320:intron 40.0%
!! GCTTGCTTCAGAAGTTTTAG+GGG + chr5_4:67864160-67864179 None:intergenic 40.0%
! CTGCTTGCTTCAGAAGTTTT+AGG + chr5_4:67864162-67864181 None:intergenic 40.0%
GCCTTGAGTCATATTAAGCT+GGG + chr5_4:67864188-67864207 None:intergenic 40.0%
TGCCTTGAGTCATATTAAGC+TGG + chr5_4:67864189-67864208 None:intergenic 40.0%
AATATGACTCAAGGCACACT+TGG - chr5_4:67864193-67864212 Msa0866320:intron 40.0%
AAGGTTTCAAACTGCAGTTG+CGG - chr5_4:67864290-67864309 Msa0866320:intron 40.0%
AGATTGAATCCATTCCAGGA+AGG + chr5_4:67864382-67864401 None:intergenic 40.0%
GAGGAAACCTTGAGAATCAT+GGG - chr5_4:67864506-67864525 Msa0866320:intron 40.0%
! GAAGCAGTAAAGCAAGGTTT+TGG - chr5_4:67864531-67864550 Msa0866320:intron 40.0%
! GCAGATCTTATTTCAATGGG+AGG - chr5_4:67864733-67864752 Msa0866320:intron 40.0%
GAGGATGAGTTCAGAAACAT+GGG - chr5_4:67864752-67864771 Msa0866320:intron 40.0%
TTCAGAAACATGGGACACTT+TGG - chr5_4:67864761-67864780 Msa0866320:intron 40.0%
GGACACTTTGGATCAAATTC+TGG - chr5_4:67864773-67864792 Msa0866320:intron 40.0%
CACTTTGGATCAAATTCTGG+AGG - chr5_4:67864776-67864795 Msa0866320:intron 40.0%
CGATCTTTATCCACTGTGTA+GGG + chr5_4:67864874-67864893 None:intergenic 40.0%
CCTACACAGTGGATAAAGAT+CGG - chr5_4:67864872-67864891 Msa0866320:intron 40.0%
GATTGTTAGGATCCATCACA+AGG + chr5_4:67865007-67865026 None:intergenic 40.0%
TTGACAGAGGTTGGATTGTT+AGG + chr5_4:67865020-67865039 None:intergenic 40.0%
AATGCAGAATTGACAGAGGT+TGG + chr5_4:67865029-67865048 None:intergenic 40.0%
ACGTAATGCAGAATTGACAG+AGG + chr5_4:67865033-67865052 None:intergenic 40.0%
TAACAAACTAACCACCTAGC+AGG - chr5_4:67865907-67865926 Msa0866320:three_prime_UTR 40.0%
CTTCTTCTAACTAACCTGCT+AGG + chr5_4:67865924-67865943 None:intergenic 40.0%
TAAATAGTAGGAGGGAAGAG+AGG - chr5_4:67865959-67865978 Msa0866320:intron 40.0%
CTTGTCTGCAAAACAAGTCT+AGG - chr5_4:67865999-67866018 Msa0866320:intron 40.0%
GCCTATAAATGGAGAAAGGA+TGG + chr5_4:67866105-67866124 None:intergenic 40.0%
GAACGCCTATAAATGGAGAA+AGG + chr5_4:67866109-67866128 None:intergenic 40.0%
AGAATCGGAACGCCTATAAA+TGG + chr5_4:67866116-67866135 None:intergenic 40.0%
TTTATAGGCGTTCCGATTCT+AGG - chr5_4:67866116-67866135 Msa0866320:three_prime_UTR 40.0%
TTATAGGCGTTCCGATTCTA+GGG - chr5_4:67866117-67866136 Msa0866320:three_prime_UTR 40.0%
TGATTGGCAATGATTAGGTC+AGG - chr5_4:67866208-67866227 Msa0866320:three_prime_UTR 40.0%
CATATTGTTCAGTACTCAGC+CGG + chr5_4:67866302-67866321 None:intergenic 40.0%
!! GGCTGAGTACTGAACAATAT+GGG - chr5_4:67866301-67866320 Msa0866320:CDS 40.0%
!! GCTGAGTACTGAACAATATG+GGG - chr5_4:67866302-67866321 Msa0866320:CDS 40.0%
AAGAGGAGTGGTGACTTAAA+GGG + chr5_4:67866354-67866373 None:intergenic 40.0%
AAAGAGGAGTGGTGACTTAA+AGG + chr5_4:67866355-67866374 None:intergenic 40.0%
AAGCTTTACACAAAGAGGAG+TGG + chr5_4:67866366-67866385 None:intergenic 40.0%
GACTGACCATGACAAATGTT+GGG + chr5_4:67866390-67866409 None:intergenic 40.0%
AGACTGACCATGACAAATGT+TGG + chr5_4:67866391-67866410 None:intergenic 40.0%
AGTCTCTAGTCTAGTGATTC+TGG - chr5_4:67866406-67866425 Msa0866320:CDS 40.0%
! TCCTTTTAGGCTTGATACTC+GGG + chr5_4:67866504-67866523 None:intergenic 40.0%
!! AAAGGAAAAGGTGCTCTAAC+TGG - chr5_4:67866518-67866537 Msa0866320:intron 40.0%
TAAGTGCTCTTTGAGCCTTA+AGG + chr5_4:67866768-67866787 None:intergenic 40.0%
TTTACATTTACCTCCCACCA+AGG - chr5_4:67866796-67866815 Msa0866320:intron 40.0%
TTACATTTACCTCCCACCAA+GGG - chr5_4:67866797-67866816 Msa0866320:intron 40.0%
TTACCACTAGGCCAAACAAT+TGG - chr5_4:67866868-67866887 Msa0866320:intron 40.0%
GCAACTCAACTCCAATTGTT+TGG + chr5_4:67866882-67866901 None:intergenic 40.0%
CCTTGAATTTCTTGAGGCAA+AGG + chr5_4:67867237-67867256 None:intergenic 40.0%
CCTTTGCCTCAAGAAATTCA+AGG - chr5_4:67867234-67867253 Msa0866320:CDS 40.0%
GCCTCAAGAAATTCAAGGAA+AGG - chr5_4:67867239-67867258 Msa0866320:CDS 40.0%
GAAATTCAAGGAAAGGTTGG+CGG - chr5_4:67867246-67867265 Msa0866320:CDS 40.0%
CTCAGCATAAAAGGTGAGAA+GGG + chr5_4:67867336-67867355 None:intergenic 40.0%
TATTAATGTTACGGCAGTGG+TGG - chr5_4:67867359-67867378 Msa0866320:intron 40.0%
GAAGAAGACACTGCCAAAAG+GGG + chr5_4:67863607-67863626 None:intergenic 45.0%
GTCTTCTTCTTCTTCTTCCG+AGG - chr5_4:67863618-67863637 Msa0866320:three_prime_UTR 45.0%
! TTGGGACCTCCAATTTTCGT+TGG - chr5_4:67863761-67863780 Msa0866320:intron 45.0%
! GACCTCCAATTTTCGTTGGA+AGG - chr5_4:67863765-67863784 Msa0866320:intron 45.0%
TCCCTTCCAACGAAAATTGG+AGG + chr5_4:67863770-67863789 None:intergenic 45.0%
GATAGTCAGCAGTGATGTCT+TGG + chr5_4:67863947-67863966 None:intergenic 45.0%
GTTCTTGCTGCATTCGACAT+GGG + chr5_4:67863994-67864013 None:intergenic 45.0%
CGAATGCAGCAAGAACCTTT+CGG - chr5_4:67863998-67864017 Msa0866320:intron 45.0%
TTTCCAACCTAACAGCCGAA+AGG + chr5_4:67864016-67864035 None:intergenic 45.0%
TGGAAAAGCGACACACACTT+TGG + chr5_4:67864042-67864061 None:intergenic 45.0%
GCCCAGCTTAATATGACTCA+AGG - chr5_4:67864184-67864203 Msa0866320:intron 45.0%
! TCAAACTGCAGTTGCGGTTT+TGG - chr5_4:67864296-67864315 Msa0866320:intron 45.0%
TTTCGGTACTTGCACTTGAG+AGG - chr5_4:67864402-67864421 Msa0866320:intron 45.0%
TTGCACTTGAGAGGCTTGTA+GGG - chr5_4:67864411-67864430 Msa0866320:intron 45.0%
! TGAGAGGCTTGTAGGGTTTT+TGG - chr5_4:67864418-67864437 Msa0866320:intron 45.0%
! GAGAGGCTTGTAGGGTTTTT+GGG - chr5_4:67864419-67864438 Msa0866320:intron 45.0%
! AGAGGCTTGTAGGGTTTTTG+GGG - chr5_4:67864420-67864439 Msa0866320:intron 45.0%
CGAGGAAACCTTGAGAATCA+TGG - chr5_4:67864505-67864524 Msa0866320:intron 45.0%
GAAACCTTGAGAATCATGGG+TGG - chr5_4:67864509-67864528 Msa0866320:intron 45.0%
! CAGTTTTCTCAGCCAATGTG+CGG + chr5_4:67864647-67864666 None:intergenic 45.0%
GGAGGATGAGTTCAGAAACA+TGG - chr5_4:67864751-67864770 Msa0866320:intron 45.0%
CTTTATCCACTGTGTAGGGT+TGG + chr5_4:67864870-67864889 None:intergenic 45.0%
CCGATCTTTATCCACTGTGT+AGG + chr5_4:67864875-67864894 None:intergenic 45.0%
ACACAGTGGATAAAGATCGG+TGG - chr5_4:67864875-67864894 Msa0866320:intron 45.0%
AGAAGGCAGAAGATCCTTTC+TGG + chr5_4:67864959-67864978 None:intergenic 45.0%
AGGAGGCAACCAAATTTCTG+TGG + chr5_4:67864987-67865006 None:intergenic 45.0%
ATTTGGTTGCCTCCTTGTGA+TGG - chr5_4:67864992-67865011 Msa0866320:intron 45.0%
TGTTAGGATCCATCACAAGG+AGG + chr5_4:67865004-67865023 None:intergenic 45.0%
!!! TTCTGGTTTTGGTTGCTGAG+TGG + chr5_4:67865111-67865130 None:intergenic 45.0%
GAGATGAAAGCAGAAGGCAA+GGG + chr5_4:67865164-67865183 None:intergenic 45.0%
TGAGATGAAAGCAGAAGGCA+AGG + chr5_4:67865165-67865184 None:intergenic 45.0%
GGACTTGAGATGAAAGCAGA+AGG + chr5_4:67865170-67865189 None:intergenic 45.0%
TAGTTACCCTGTGAGTGGAT+AGG - chr5_4:67865874-67865893 Msa0866320:three_prime_UTR 45.0%
AGTTACCCTGTGAGTGGATA+GGG - chr5_4:67865875-67865894 Msa0866320:three_prime_UTR 45.0%
CTTCTAACTAACCTGCTAGG+TGG + chr5_4:67865921-67865940 None:intergenic 45.0%
ACAAGTCTAGGTTGCCATCA+AGG - chr5_4:67866011-67866030 Msa0866320:intron 45.0%
CAAGTCTAGGTTGCCATCAA+GGG - chr5_4:67866012-67866031 Msa0866320:intron 45.0%
! GGCCAATGGTTGGTCAAATT+GGG - chr5_4:67866033-67866052 Msa0866320:intron 45.0%
CTCCCAATTTGACCAACCAT+TGG + chr5_4:67866038-67866057 None:intergenic 45.0%
GTTGAGCCTGACAAAAGAAG+GGG + chr5_4:67866149-67866168 None:intergenic 45.0%
GGTTGAGCCTGACAAAAGAA+GGG + chr5_4:67866150-67866169 None:intergenic 45.0%
GTCAGGCTCAACCCTAATTT+AGG - chr5_4:67866157-67866176 Msa0866320:three_prime_UTR 45.0%
AGGTACAGAAGATGACCTTG+TGG - chr5_4:67866228-67866247 Msa0866320:three_prime_UTR 45.0%
!! ACCTTGTGGCTTGTTGCATT+TGG - chr5_4:67866242-67866261 Msa0866320:three_prime_UTR 45.0%
TCCAAATGCAACAAGCCACA+AGG + chr5_4:67866246-67866265 None:intergenic 45.0%
! GGAAGAAGCCTTTTTACCGT+TGG - chr5_4:67866263-67866282 Msa0866320:three_prime_UTR 45.0%
!! CGGCTGAGTACTGAACAATA+TGG - chr5_4:67866300-67866319 Msa0866320:CDS 45.0%
!! GAGTACTGAACAATATGGGG+AGG - chr5_4:67866305-67866324 Msa0866320:CDS 45.0%
AGAGGAGTGGTGACTTAAAG+GGG + chr5_4:67866353-67866372 None:intergenic 45.0%
TGGGCAAGCTTTACACAAAG+AGG + chr5_4:67866371-67866390 None:intergenic 45.0%
AGCTTGCCCAACATTTGTCA+TGG - chr5_4:67866381-67866400 Msa0866320:CDS 45.0%
ATTCTGGTCAGTCATCCTCT+GGG - chr5_4:67866422-67866441 Msa0866320:CDS 45.0%
! GGGGTTATGTTTGGTACTGA+AGG + chr5_4:67866483-67866502 None:intergenic 45.0%
TGATACTCGGGGGTTATGTT+TGG + chr5_4:67866492-67866511 None:intergenic 45.0%
! CTTTTAGGCTTGATACTCGG+GGG + chr5_4:67866502-67866521 None:intergenic 45.0%
! CCTTTTAGGCTTGATACTCG+GGG + chr5_4:67866503-67866522 None:intergenic 45.0%
TTGGGTACCAAAGGTTTGGA+CGG + chr5_4:67866544-67866563 None:intergenic 45.0%
GCTATTGGGTACCAAAGGTT+TGG + chr5_4:67866548-67866567 None:intergenic 45.0%
AACCTTTGGTACCCAATAGC+AGG - chr5_4:67866548-67866567 Msa0866320:intron 45.0%
ACCTTTGGTACCCAATAGCA+GGG - chr5_4:67866549-67866568 Msa0866320:intron 45.0%
AGGGTAGGTGTGGTAAAGTT+TGG - chr5_4:67866568-67866587 Msa0866320:intron 45.0%
GGGTAGGTGTGGTAAAGTTT+GGG - chr5_4:67866569-67866588 Msa0866320:intron 45.0%
AGTTTGGGAGCCATTTGACT+AGG - chr5_4:67866584-67866603 Msa0866320:intron 45.0%
GTTTGGGAGCCATTTGACTA+GGG - chr5_4:67866585-67866604 Msa0866320:intron 45.0%
TGCAGACCCTTTAAGTCTGT+AGG - chr5_4:67866612-67866631 Msa0866320:intron 45.0%
CCTTAAGGTCTTCTCAACCT+TGG + chr5_4:67866753-67866772 None:intergenic 45.0%
CCAAGGTTGAGAAGACCTTA+AGG - chr5_4:67866750-67866769 Msa0866320:intron 45.0%
TGGCCTAGTGGTAAAAAACC+AGG + chr5_4:67866862-67866881 None:intergenic 45.0%
ACTCCAATTGTTTGGCCTAG+TGG + chr5_4:67866874-67866893 None:intergenic 45.0%
! TCTGAGCTTTTGGTAGAAGC+CGG - chr5_4:67867192-67867211 Msa0866320:CDS 45.0%
CCTCAGCATAAAAGGTGAGA+AGG + chr5_4:67867337-67867356 None:intergenic 45.0%
! CCTTCTCACCTTTTATGCTG+AGG - chr5_4:67867334-67867353 Msa0866320:CDS 45.0%
!! CTCACTTTTCTCGGCAAAGG+TGG - chr5_4:67863661-67863680 Msa0866320:three_prime_UTR 50.0%
GGTTCTTGCTGCATTCGACA+TGG + chr5_4:67863995-67864014 None:intergenic 50.0%
GCAAGAACCTTTCGGCTGTT+AGG - chr5_4:67864006-67864025 Msa0866320:intron 50.0%
GAACCTTTCGGCTGTTAGGT+TGG - chr5_4:67864010-67864029 Msa0866320:intron 50.0%
ATGACTCAAGGCACACTTGG+AGG - chr5_4:67864196-67864215 Msa0866320:intron 50.0%
TGACTCAAGGCACACTTGGA+GGG - chr5_4:67864197-67864216 Msa0866320:intron 50.0%
TAGATTGTCGGAGAGGAGCT+TGG - chr5_4:67864353-67864372 Msa0866320:intron 50.0%
CTTGCACTTGAGAGGCTTGT+AGG - chr5_4:67864410-67864429 Msa0866320:intron 50.0%
! ATATGATGGTGTCAGCAGCG+AGG - chr5_4:67864487-67864506 Msa0866320:intron 50.0%
GCTTCCACCCATGATTCTCA+AGG + chr5_4:67864516-67864535 None:intergenic 50.0%
TGGGTGGAAGCAGTAAAGCA+AGG - chr5_4:67864525-67864544 Msa0866320:intron 50.0%
TCCTTCACTCCTGAGACTTG+TGG - chr5_4:67864686-67864705 Msa0866320:intron 50.0%
TCCACAAGTCTCAGGAGTGA+AGG + chr5_4:67864690-67864709 None:intergenic 50.0%
TGGCTTCATCCACAAGTCTC+AGG + chr5_4:67864698-67864717 None:intergenic 50.0%
ATGTAGCCAACCCTACACAG+TGG - chr5_4:67864861-67864880 Msa0866320:intron 50.0%
CAAGCTGGTGCTCAAGTTTC+AGG - chr5_4:67865071-67865090 Msa0866320:intron 50.0%
! GCTCAAGTTTCAGGCGCTTT+TGG - chr5_4:67865080-67865099 Msa0866320:intron 50.0%
TCGGTTACTCTCTTCATGCC+AGG - chr5_4:67865326-67865345 Msa0866320:intron 50.0%
ACGCTTAGTTACCCTGTGAG+TGG - chr5_4:67865869-67865888 Msa0866320:three_prime_UTR 50.0%
ATTCGCCCTATCCACTCACA+GGG + chr5_4:67865883-67865902 None:intergenic 50.0%
AATTCGCCCTATCCACTCAC+AGG + chr5_4:67865884-67865903 None:intergenic 50.0%
! GGGCCAATGGTTGGTCAAAT+TGG - chr5_4:67866032-67866051 Msa0866320:intron 50.0%
! TCTGGTCCCCTTCTTTTGTC+AGG - chr5_4:67866140-67866159 Msa0866320:three_prime_UTR 50.0%
GGGTTGAGCCTGACAAAAGA+AGG + chr5_4:67866151-67866170 None:intergenic 50.0%
GGGAAGCTCCAACGGTAAAA+AGG + chr5_4:67866274-67866293 None:intergenic 50.0%
! TCAGTACTCAGCCGGTTCAA+GGG + chr5_4:67866294-67866313 None:intergenic 50.0%
! TTCAGTACTCAGCCGGTTCA+AGG + chr5_4:67866295-67866314 None:intergenic 50.0%
ATGGGGAGGATTGTGACTGT+AGG - chr5_4:67866319-67866338 Msa0866320:CDS 50.0%
GAGTGGTGACTTAAAGGGGT+AGG + chr5_4:67866349-67866368 None:intergenic 50.0%
GATTCTGGTCAGTCATCCTC+TGG - chr5_4:67866421-67866440 Msa0866320:CDS 50.0%
TTCTGGTCAGTCATCCTCTG+GGG - chr5_4:67866423-67866442 Msa0866320:CDS 50.0%
TCTCTTGAACATACCCCCAG+AGG + chr5_4:67866440-67866459 None:intergenic 50.0%
CCCCGAGTATCAAGCCTAAA+AGG - chr5_4:67866500-67866519 Msa0866320:CDS 50.0%
TAACTGGCCGTCCAAACCTT+TGG - chr5_4:67866534-67866553 Msa0866320:intron 50.0%
ACCCTGCTATTGGGTACCAA+AGG + chr5_4:67866553-67866572 None:intergenic 50.0%
TTGGTACCCAATAGCAGGGT+AGG - chr5_4:67866553-67866572 Msa0866320:intron 50.0%
ACCACACCTACCCTGCTATT+GGG + chr5_4:67866562-67866581 None:intergenic 50.0%
TACCACACCTACCCTGCTAT+TGG + chr5_4:67866563-67866582 None:intergenic 50.0%
CTGCAACCTCCCTAGTCAAA+TGG + chr5_4:67866597-67866616 None:intergenic 50.0%
AGGTCTTCTCAACCTTGGAC+CGG + chr5_4:67866748-67866767 None:intergenic 50.0%
!! GGCTCAAAGAGCACTTACGA+AGG - chr5_4:67866771-67866790 Msa0866320:intron 50.0%
AAAAAACCAGGCCCTAGACC+AGG + chr5_4:67866850-67866869 None:intergenic 50.0%
!!! GGGCCTGGTTTTTTACCACT+AGG - chr5_4:67866856-67866875 Msa0866320:intron 50.0%
! TAGGGGAGGATCTGAGCTTT+TGG - chr5_4:67867182-67867201 Msa0866320:CDS 50.0%
TGGTAGAAGCCGGAGATCAA+AGG - chr5_4:67867202-67867221 Msa0866320:CDS 50.0%
GATGACACGCCTTTGATCTC+CGG + chr5_4:67867214-67867233 None:intergenic 50.0%
TTTCTCGGCAAAGGTGGCTC+TGG - chr5_4:67863667-67863686 Msa0866320:three_prime_UTR 55.0%
TACCTGAGCGGCGAAGATAG+CGG + chr5_4:67863704-67863723 None:intergenic 55.0%
GACTCAAGGCACACTTGGAG+GGG - chr5_4:67864198-67864217 Msa0866320:intron 55.0%
GCTTGGCATCCTTCCTGGAA+TGG - chr5_4:67864370-67864389 Msa0866320:intron 55.0%
! TGGGGGTGTGCAATTCAAGC+TGG - chr5_4:67865056-67865075 Msa0866320:intron 55.0%
AGTAGGAGGGAAGAGAGGAG+AGG - chr5_4:67865964-67865983 Msa0866320:intron 55.0%
GGAAGAGAGGAGAGGATGCT+TGG - chr5_4:67865972-67865991 Msa0866320:intron 55.0%
AGGTTGCCATCAAGGGCCAA+TGG - chr5_4:67866019-67866038 Msa0866320:intron 55.0%
TGCCATCAAGGGCCAATGGT+TGG - chr5_4:67866023-67866042 Msa0866320:intron 55.0%
GACCAACCATTGGCCCTTGA+TGG + chr5_4:67866028-67866047 None:intergenic 55.0%
AGGGGACCAGACCCTAGAAT+CGG + chr5_4:67866131-67866150 None:intergenic 55.0%
CGGTTCAAGGGAAGCTCCAA+CGG + chr5_4:67866282-67866301 None:intergenic 55.0%
CGTTGGAGCTTCCCTTGAAC+CGG - chr5_4:67866280-67866299 Msa0866320:exon 55.0%
TCTGGTCAGTCATCCTCTGG+GGG - chr5_4:67866424-67866443 Msa0866320:CDS 55.0%
ACCCAATAGCAGGGTAGGTG+TGG - chr5_4:67866558-67866577 Msa0866320:intron 55.0%
TGGGAGCCATTTGACTAGGG+AGG - chr5_4:67866588-67866607 Msa0866320:intron 55.0%
AGTGGGAGAGAATGGTGACC+CGG - chr5_4:67866726-67866745 Msa0866320:intron 55.0%
GGTCTTCTCAACCTTGGACC+GGG + chr5_4:67866747-67866766 None:intergenic 55.0%
AACCTGGAACCTCCTGGTCT+AGG - chr5_4:67866835-67866854 Msa0866320:intron 55.0%
ACCTGGAACCTCCTGGTCTA+GGG - chr5_4:67866836-67866855 Msa0866320:intron 55.0%
TCAAGGCACACTTGGAGGGG+TGG - chr5_4:67864201-67864220 Msa0866320:intron 60.0%
CAAGGCACACTTGGAGGGGT+GGG - chr5_4:67864202-67864221 Msa0866320:intron 60.0%
GAGGAGCTTGGCATCCTTCC+TGG - chr5_4:67864365-67864384 Msa0866320:intron 60.0%
!! GGCGTTCCGATTCTAGGGTC+TGG - chr5_4:67866122-67866141 Msa0866320:three_prime_UTR 60.0%
GAGAATGGTGACCCGGTCCA+AGG - chr5_4:67866733-67866752 Msa0866320:intron 60.0%
TCCAGGTTTGAGCCCCGCTA+AGG + chr5_4:67866823-67866842 None:intergenic 60.0%
GGCTCAAACCTGGAACCTCC+TGG - chr5_4:67866829-67866848 Msa0866320:intron 60.0%
AAACCAGGCCCTAGACCAGG+AGG + chr5_4:67866847-67866866 None:intergenic 60.0%
! CTGAGCGGCGAAGATAGCGG+CGG + chr5_4:67863701-67863720 None:intergenic 65.0%
CCTCCCACCAAGGGCCTTAG+CGG - chr5_4:67866806-67866825 Msa0866320:intron 65.0%
CTCCCACCAAGGGCCTTAGC+GGG - chr5_4:67866807-67866826 Msa0866320:intron 65.0%
TCCCACCAAGGGCCTTAGCG+GGG - chr5_4:67866808-67866827 Msa0866320:intron 65.0%
TTGAGCCCCGCTAAGGCCCT+TGG + chr5_4:67866816-67866835 None:intergenic 65.0%
GCCTTAGCGGGGCTCAAACC+TGG - chr5_4:67866819-67866838 Msa0866320:intron 65.0%
GCCCTAGACCAGGAGGTTCC+AGG + chr5_4:67866840-67866859 None:intergenic 65.0%
! GAACCTCCTGGTCTAGGGCC+TGG - chr5_4:67866841-67866860 Msa0866320:intron 65.0%
! AGCGGCGAAGATAGCGGCGG+TGG + chr5_4:67863698-67863717 None:intergenic 70.0%
CGCCGCTATCTTCGCCGCTC+AGG - chr5_4:67863699-67863718 Msa0866320:intron 70.0%
CCGCTAAGGCCCTTGGTGGG+AGG + chr5_4:67866809-67866828 None:intergenic 70.0%
GCCCCGCTAAGGCCCTTGGT+GGG + chr5_4:67866812-67866831 None:intergenic 70.0%
AGCCCCGCTAAGGCCCTTGG+TGG + chr5_4:67866813-67866832 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 67863458 67867431 67863458 ID=Msa0866320;Name=Msa0866320
chr5_4 mRNA 67863458 67867431 67863458 ID=Msa0866320-mRNA-1;Parent=Msa0866320;Name=Msa0866320-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0.6|0.66|1|1|0.83|6|877|175
chr5_4 exon 67863458 67863709 67863458 ID=Msa0866320-mRNA-1:exon:21447;Parent=Msa0866320-mRNA-1
chr5_4 exon 67865510 67865929 67865510 ID=Msa0866320-mRNA-1:exon:21446;Parent=Msa0866320-mRNA-1
chr5_4 exon 67866092 67866533 67866092 ID=Msa0866320-mRNA-1:exon:21445;Parent=Msa0866320-mRNA-1
chr5_4 exon 67866670 67866744 67866670 ID=Msa0866320-mRNA-1:exon:21444;Parent=Msa0866320-mRNA-1
chr5_4 exon 67867169 67867377 67867169 ID=Msa0866320-mRNA-1:exon:21443;Parent=Msa0866320-mRNA-1
chr5_4 exon 67867425 67867431 67867425 ID=Msa0866320-mRNA-1:exon:21442;Parent=Msa0866320-mRNA-1
chr5_4 CDS 67867425 67867431 67867425 ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4 CDS 67867169 67867377 67867169 ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4 CDS 67866670 67866744 67866670 ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4 CDS 67866297 67866533 67866297 ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4 three_prime_UTR 67866092 67866296 67866092 ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1
chr5_4 three_prime_UTR 67865510 67865929 67865510 ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1
chr5_4 three_prime_UTR 67863458 67863709 67863458 ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1
Gene Sequence

>Msa0866320

ATGACAATGAGGCGTTTAAGATTAGCTTTGGATTGGATGGGTTCAATTTCGAGCTTCACATTTCCGGTTCTTTGTCGTTCAACTTCTGTTCGAACAAAACCCCTTTTGGCAGTGTCTTCTTCTTCTTCTTCCGAGGATGTTGCTTCAACTAAATTACTCACTTTTCTCGGCAAAGGTGGCTCTGGCAAAACCACCGCCGCTATCTTCGCCGCTCAGATGCTTCTTGAACCCCTAAAACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTCGGAGAGGAGCTTGGCATCCTTCCTGGAATGGATTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGCCATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATATGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTTTGGAATTGCTACTTTTTATCTCACAGACAAACATATCCTTGA

Protein sequence

>Msa0866320

MTMRRLRLALDWMGSISSFTFPVLCRSTSVRTKPLLAVSSSSSSEDVASTKLLTFLGKGGSGKTTAAIFAAQMLLEPLKLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMPSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARFWNCYFLSHRQTYP*