AlfalfaGEDB | Msa0866320

M. sativa cultivar zhongmu-4 / Msa0866320

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF02374.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0866320	ACK38188.1	71.707	205	8	2	13	167	2	206	8.83e-83	256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0866320	sp\|Q6DYE4\|Y1609_ARATH	47.291	203	49	4	22	169	27	226	2.27e-44	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0866320	B7ZWR0	71.707	205	8	2	13	167	2	206	4.22e-83	256

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0866320	-0.800720	1.262724e-48	-8.615850e-47
Msa0001420	Msa0866320	0.824348	8.475410e-54	-8.615850e-47
Msa0001510	Msa0866320	0.840268	9.633819e-58	-8.615850e-47
Msa0001540	Msa0866320	0.839232	1.791897e-57	-8.615850e-47
Msa0002690	Msa0866320	0.838811	2.302916e-57	-8.615850e-47
Msa0002700	Msa0866320	0.830757	2.453300e-55	-8.615850e-47
Msa0004180	Msa0866320	0.862178	6.091059e-64	-8.615850e-47
Msa0007570	Msa0866320	0.838251	3.213439e-57	-8.615850e-47
Msa0008600	Msa0866320	-0.817607	3.021474e-52	-8.615850e-47
Msa0009210	Msa0866320	0.829058	6.365852e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0866320	MtrunA17_Chr5g0422401	71.707	205	8	2	13	167	2	206	4.56e-84	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0866320	AT1G26090.1	47.291	203	49	4	22	169	27	226	2.31e-45	155

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Find 109 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGTTCCAATCGAT+TGG	0.414883	5_4:+67865664	None:intergenic
AAACATTGTTCCAATCGATT+GGG	0.477015	5_4:+67865665	None:intergenic
AAATAAATGCAGTATAGGGG+AGG	0.629069	5_4:-67863699	Msa0866320:intron
AAATTTCTGTGGATTTGAGA+AGG	0.582017	5_4:+67865894	None:intergenic
AACTGATGATGTCATATTAC+TGG	0.259593	5_4:+67865585	None:intergenic
AAGAAGAAGACACTGCCAAA+AGG	0.495604	5_4:+67867261	None:intergenic
AAGACTTCTGTCTTGGAATT+TGG	0.162457	5_4:+67863596	None:intergenic
AAGATTAGCTTTGGATTGGA+TGG	0.430982	5_4:-67867345	Msa0866320:CDS
AATATGACTCAAGGCACACT+TGG	0.591609	5_4:-67866674	Msa0866320:CDS
AATGCAGAATTGACAGAGGT+TGG	0.475547	5_4:+67865841	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTGAATTGATGCAGTG+AGG	-	chr5_4:67863494-67863513	Msa0866320:three_prime_UTR	30.0%
TGCATAATATATGCTAGATG+GGG	-	chr5_4:67863793-67863812	Msa0866320:intron	30.0%
ATATATATAGAGGGAGGAAA+TGG	+	chr5_4:67864062-67864081	None:intergenic	30.0%
CACAAGGTGATATATATAGA+GGG	+	chr5_4:67864071-67864090	None:intergenic	30.0%
ACACAAGGTGATATATATAG+AGG	+	chr5_4:67864072-67864091	None:intergenic	30.0%
TCGAAATCAAAATGTACACA+AGG	+	chr5_4:67864087-67864106	None:intergenic	30.0%
TCTATTATATGGCACAAAAG+AGG	+	chr5_4:67864337-67864356	None:intergenic	30.0%
TGTGCCATATAATAGATTGT+CGG	-	chr5_4:67864341-67864360	Msa0866320:intron	30.0%
TCAAACGAAAGAAAATGTCA+AGG	+	chr5_4:67864590-67864609	None:intergenic	30.0%
GAAAACTGAAATTGGTAGAT+TGG	-	chr5_4:67864659-67864678	Msa0866320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	67863458	67867431	67863458	ID=Msa0866320;Name=Msa0866320
chr5_4	mRNA	67863458	67867431	67863458	ID=Msa0866320-mRNA-1;Parent=Msa0866320;Name=Msa0866320-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0\|0.6\|0.66\|1\|1\|0.83\|6\|877\|175
chr5_4	exon	67863458	67863709	67863458	ID=Msa0866320-mRNA-1:exon:21447;Parent=Msa0866320-mRNA-1
chr5_4	exon	67865510	67865929	67865510	ID=Msa0866320-mRNA-1:exon:21446;Parent=Msa0866320-mRNA-1
chr5_4	exon	67866092	67866533	67866092	ID=Msa0866320-mRNA-1:exon:21445;Parent=Msa0866320-mRNA-1
chr5_4	exon	67866670	67866744	67866670	ID=Msa0866320-mRNA-1:exon:21444;Parent=Msa0866320-mRNA-1
chr5_4	exon	67867169	67867377	67867169	ID=Msa0866320-mRNA-1:exon:21443;Parent=Msa0866320-mRNA-1
chr5_4	exon	67867425	67867431	67867425	ID=Msa0866320-mRNA-1:exon:21442;Parent=Msa0866320-mRNA-1
chr5_4	CDS	67867425	67867431	67867425	ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4	CDS	67867169	67867377	67867169	ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4	CDS	67866670	67866744	67866670	ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4	CDS	67866297	67866533	67866297	ID=Msa0866320-mRNA-1:cds;Parent=Msa0866320-mRNA-1
chr5_4	three_prime_UTR	67866092	67866296	67866092	ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1
chr5_4	three_prime_UTR	67865510	67865929	67865510	ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1
chr5_4	three_prime_UTR	67863458	67863709	67863458	ID=Msa0866320-mRNA-1:three_prime_utr;Parent=Msa0866320-mRNA-1

Gene Sequence

>Msa0866320

ATGACAATGAGGCGTTTAAGATTAGCTTTGGATTGGATGGGTTCAATTTCGAGCTTCACATTTCCGGTTCTTTGTCGTTCAACTTCTGTTCGAACAAAACCCCTTTTGGCAGTGTCTTCTTCTTCTTCTTCCGAGGATGTTGCTTCAACTAAATTACTCACTTTTCTCGGCAAAGGTGGCTCTGGCAAAACCACCGCCGCTATCTTCGCCGCTCAGATGCTTCTTGAACCCCTAAAACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTCGGAGAGGAGCTTGGCATCCTTCCTGGAATGGATTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGCCATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATATGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTTTGGAATTGCTACTTTTTATCTCACAGACAAACATATCCTTGA

Protein sequence

>Msa0866320

MTMRRLRLALDWMGSISSFTFPVLCRSTSVRTKPLLAVSSSSSSEDVASTKLLTFLGKGGSGKTTAAIFAAQMLLEPLKLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMPSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARFWNCYFLSHRQTYP*