AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296490 MtrunA17_Chr2g0319111 96.907 194 6 0 1 194 1 194 6.34e-139 385
Msa0296490 MtrunA17_Chr1g0169641 37.500 88 54 1 76 163 18 104 7.07e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296490 AT5G54600.1 72.941 170 45 1 25 193 24 193 2.04e-87 256
Msa0296490 AT5G54600.2 64.118 170 41 2 25 193 24 174 3.54e-70 211
Msa0296490 AT5G23535.2 36.170 94 59 1 76 169 18 110 8.45e-12 61.2
Msa0296490 AT5G23535.1 36.170 94 59 1 76 169 18 110 8.45e-12 61.2

Find 59 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGATGATGATTT+TGG 0.154494 2_3:-49848080 None:intergenic
CCATACACAACTTGAGTAAT+TGG 0.198248 2_3:+49851805 Msa0296490:three_prime_UTR
ATATACACTTAACAATAAAA+TGG 0.212660 2_3:-49851746 None:intergenic
ATTATGTTGTGTTATTGTTT+TGG 0.299061 2_3:+49851767 Msa0296490:three_prime_UTR
CTCTCCTCCAACTCTTTCTT+CGG 0.310929 2_3:+49848203 Msa0296490:CDS
CACTCTCTCTCCTCTTCTTC+CGG 0.354334 2_3:+49848244 Msa0296490:CDS
TGCCTTGAATTTCAGATTGA+AGG 0.361025 2_3:+49851465 Msa0296490:intron
GATACTGTGAAAGTCATTTC+AGG 0.365279 2_3:+49851001 Msa0296490:CDS
CACAAATTGCATGTTAAAGT+TGG 0.369050 2_3:+49850977 Msa0296490:CDS
TGATTGATAGTGTAGAGAAT+TGG 0.369373 2_3:+49851607 Msa0296490:CDS
TAGAAGTAATATATTGAAGT+TGG 0.399718 2_3:-49851995 None:intergenic
CATGTGAAGAGTAGAGAAGA+GGG 0.410603 2_3:+49851112 Msa0296490:CDS
AGTCATTTCAGGACATGAAA+AGG 0.422260 2_3:+49851012 Msa0296490:CDS
TGTAACACTGGAAGGCTGTT+TGG 0.423940 2_3:-49850956 None:intergenic
CCAATTACTCAAGTTGTGTA+TGG 0.434585 2_3:-49851805 None:intergenic
AACTCTCAATGTAGACTTGT+CGG 0.435195 2_3:+49851905 Msa0296490:three_prime_UTR
GGAACCAGGGCAAATAAATA+AGG 0.444386 2_3:+49851135 Msa0296490:CDS
TATACACTTAACAATAAAAT+GGG 0.446260 2_3:-49851745 None:intergenic
GACATGAAAAGGGTCAAGTC+GGG 0.450856 2_3:+49851023 Msa0296490:CDS
GAGAGAGTGATGGGAGAGAG+AGG 0.454990 2_3:-49848230 None:intergenic
GAGTGATGGGAGAGAGAGGC+TGG 0.459880 2_3:-49848226 None:intergenic
AGAAGAGGAGAGAGAGTGAT+GGG 0.472459 2_3:-49848239 None:intergenic
ATAATCAAAACATCCTTTGT+CGG 0.484825 2_3:-49851933 None:intergenic
ATAACCTTATTTATTTGCCC+TGG 0.506533 2_3:-49851139 None:intergenic
AAGAATGTCGCGAGCCGTGT+AGG 0.506736 2_3:+49851528 Msa0296490:CDS
AACAACAACAATGGTAGCTA+TGG 0.507971 2_3:+49848142 Msa0296490:exon
GTCATTTCAGGACATGAAAA+GGG 0.512740 2_3:+49851013 Msa0296490:CDS
GGAGAGGGAAAGTGAGGTCA+TGG 0.516077 2_3:-49848186 None:intergenic
GTTGGAGGAGAGGGAAAGTG+AGG 0.516290 2_3:-49848192 None:intergenic
GCAGAAGCAGAAAGAAGAAG+AGG 0.532761 2_3:+49848098 Msa0296490:five_prime_UTR
AACAATGGTAGCTATGGCTA+TGG 0.541534 2_3:+49848148 Msa0296490:exon
AGCAATGTCGTATTGTAATG+AGG 0.546477 2_3:+49850594 Msa0296490:CDS
CTGGCCGAAGAAAGAGTTGG+AGG 0.550962 2_3:-49848207 None:intergenic
ACATGCAATTTGTGTAACAC+TGG 0.551056 2_3:-49850968 None:intergenic
GAATGGAGTACCGGAAGAAG+AGG 0.553957 2_3:-49848254 None:intergenic
GGACATGAAAAGGGTCAAGT+CGG 0.554119 2_3:+49851022 Msa0296490:CDS
ATACGACATTGCTTATCTGT+CGG 0.561688 2_3:-49850584 None:intergenic
TGAATTAATATAGTAAAACT+AGG 0.562139 2_3:-49851676 None:intergenic
TTTCTGGTAGCTTAAACGAT+GGG 0.563960 2_3:+49850916 Msa0296490:intron
GCAATGTCGTATTGTAATGA+GGG 0.573580 2_3:+49850595 Msa0296490:CDS
CGAAGAAAGAGTTGGAGGAG+AGG 0.575494 2_3:-49848202 None:intergenic
ATGTGAAGAGTAGAGAAGAG+GGG 0.578718 2_3:+49851113 Msa0296490:CDS
AAGAAGAGGAGAGAGAGTGA+TGG 0.583328 2_3:-49848240 None:intergenic
GAAGAAAGAGTTGGAGGAGA+GGG 0.585065 2_3:-49848201 None:intergenic
TCAAAACATCCTTTGTCGGA+AGG 0.589800 2_3:-49851929 None:intergenic
CTTGTCGGTCCTTCCGACAA+AGG 0.592601 2_3:+49851920 Msa0296490:three_prime_UTR
AGGCTGGCCGAAGAAAGAGT+TGG 0.600014 2_3:-49848210 None:intergenic
GGTCATAAAGTTCTTGACAA+TGG 0.600337 2_3:+49851549 Msa0296490:CDS
TGTGAAGAGTAGAGAAGAGG+GGG 0.603619 2_3:+49851114 Msa0296490:CDS
GCATGTGAAGAGTAGAGAAG+AGG 0.605586 2_3:+49851111 Msa0296490:CDS
ACATGAAAAGGGTCAAGTCG+GGG 0.610466 2_3:+49851024 Msa0296490:CDS
GCTTAAACGATGGGAGCGAA+AGG 0.614072 2_3:+49850925 Msa0296490:intron
TTGTGTATGGAGATCAACAT+AGG 0.615289 2_3:-49851792 None:intergenic
CAAGAACTTTATGACCTACA+CGG 0.617107 2_3:-49851542 None:intergenic
AGAGAATTGGAAGAAACTGA+AGG 0.625300 2_3:+49851620 Msa0296490:CDS
GCAATTTGTGTAACACTGGA+AGG 0.648985 2_3:-49850964 None:intergenic
ATCACATTTGAACTGTGGAT+AGG 0.663323 2_3:-49851489 None:intergenic
AGAGCATCACATTTGAACTG+TGG 0.672540 2_3:-49851494 None:intergenic
TGAAAAGGGTCAAGTCGGGG+AGG 0.705204 2_3:+49851027 Msa0296490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATCTATATTGTTTTTAT+TGG + chr2_3:49850545-49850564 Msa0296490:intron 10.0%
!! ATAAAATTAAAGAAATTGTA+AGG - chr2_3:49850789-49850808 None:intergenic 10.0%
!! AAATAAAAAAATTTGCGAAA+TGG - chr2_3:49848293-49848312 None:intergenic 15.0%
!!! GTTTCAATTTTTATTATTCT+AGG + chr2_3:49848326-49848345 Msa0296490:intron 15.0%
!! TAAAAAAATAAAACACGAAA+TGG - chr2_3:49848427-49848446 None:intergenic 15.0%
!!! TTCGTGTTTTATTTTTTTAT+TGG + chr2_3:49848428-49848447 Msa0296490:intron 15.0%
!!! TTATTTTTTTATTGGAATTG+TGG + chr2_3:49848436-49848455 Msa0296490:intron 15.0%
!! TATTATATTCATCAAATTAG+TGG + chr2_3:49848489-49848508 Msa0296490:intron 15.0%
!! AATGTGAAAATATTGATAAA+AGG + chr2_3:49848885-49848904 Msa0296490:intron 15.0%
!! AAGAACATATATTCTTATTA+AGG - chr2_3:49848928-49848947 None:intergenic 15.0%
!! AAAATAAACTCAAAATTTGT+AGG - chr2_3:49849289-49849308 None:intergenic 15.0%
!!! GTGTTTTTTTTTTTTTATAG+AGG - chr2_3:49849956-49849975 None:intergenic 15.0%
!!! ATTCATAATAATGTTTTTTC+TGG - chr2_3:49851180-49851199 None:intergenic 15.0%
!! TGAATTAATATAGTAAAACT+AGG - chr2_3:49851679-49851698 None:intergenic 15.0%
!! TATACACTTAACAATAAAAT+GGG - chr2_3:49851748-49851767 None:intergenic 15.0%
!! ATATACACTTAACAATAAAA+TGG - chr2_3:49851749-49851768 None:intergenic 15.0%
!!! TTTTCTACTTTTATCCATAT+GGG + chr2_3:49848355-49848374 Msa0296490:intron 20.0%
!!! ATTTTAAGAATTTTAGTTCC+TGG + chr2_3:49848395-49848414 Msa0296490:intron 20.0%
!!! TTTTAAGAATTTTAGTTCCT+GGG + chr2_3:49848396-49848415 Msa0296490:intron 20.0%
!! GTCAAATGTTTCTTATAATA+AGG - chr2_3:49849418-49849437 None:intergenic 20.0%
!!! TAAGAAACATTTGACTTTTT+AGG + chr2_3:49849423-49849442 Msa0296490:intron 20.0%
!!! TAAGAAACAATTGACTTTTT+TGG - chr2_3:49849512-49849531 None:intergenic 20.0%
!!! GTCAATTGTTTCTTATAATA+AGG + chr2_3:49849517-49849536 Msa0296490:intron 20.0%
!! AGTCAATTATATATAACGAA+AGG - chr2_3:49850263-49850282 None:intergenic 20.0%
!!! TATTTCACATAACAGATTTT+TGG + chr2_3:49850338-49850357 Msa0296490:intron 20.0%
!! CTGAAAAGAATAATCATATT+AGG - chr2_3:49850649-49850668 None:intergenic 20.0%
!!! ATTACACAAGACATTTTATA+AGG - chr2_3:49850876-49850895 None:intergenic 20.0%
!!! ATAATGTTTTTTCTGGTAAA+GGG - chr2_3:49851173-49851192 None:intergenic 20.0%
!!! AATAATGTTTTTTCTGGTAA+AGG - chr2_3:49851174-49851193 None:intergenic 20.0%
!!! TGTATGATGTTTGTTTTTTT+TGG + chr2_3:49851402-49851421 Msa0296490:intron 20.0%
!!! ATTATGTTGTGTTATTGTTT+TGG + chr2_3:49851767-49851786 Msa0296490:three_prime_UTR 20.0%
!!! AATCTTCAAAATACCATTTT+TGG + chr2_3:49851960-49851979 Msa0296490:three_prime_UTR 20.0%
!!! CTTTTCTACTTTTATCCATA+TGG + chr2_3:49848354-49848373 Msa0296490:intron 25.0%
! CTTGAATTAAAAAACCCATA+TGG - chr2_3:49848372-49848391 None:intergenic 25.0%
! TTCGTAATTCTATTCATGTT+TGG + chr2_3:49848538-49848557 Msa0296490:intron 25.0%
! TCGTAATTCTATTCATGTTT+GGG + chr2_3:49848539-49848558 Msa0296490:intron 25.0%
!! TATTCATGTTTGGGATTATA+TGG + chr2_3:49848548-49848567 Msa0296490:intron 25.0%
! TATTCTTATTAAGGCTTAGT+TGG - chr2_3:49848919-49848938 None:intergenic 25.0%
! AAACTCATCCAAATTGAAAA+CGG - chr2_3:49849126-49849145 None:intergenic 25.0%
! ATGTTTCTTATAATAAGGAC+CGG - chr2_3:49849413-49849432 None:intergenic 25.0%
!! TTGTTTCTTATAATAAGGAC+CGG + chr2_3:49849522-49849541 Msa0296490:intron 25.0%
! AAAGATAAGGAAACAAGATT+GGG - chr2_3:49849622-49849641 None:intergenic 25.0%
! AAAAGATAAGGAAACAAGAT+TGG - chr2_3:49849623-49849642 None:intergenic 25.0%
!!! TTCTCTCTAAAATTTAGAGA+TGG + chr2_3:49849656-49849675 Msa0296490:intron 25.0%
!!! TTGATCTTCTCTCTAAAATT+TGG - chr2_3:49849650-49849669 None:intergenic 25.0%
!!! CATACCCTTTTTTATTTGTA+CGG + chr2_3:49850231-49850250 Msa0296490:intron 25.0%
! TGTTCCGTACAAATAAAAAA+GGG - chr2_3:49850238-49850257 None:intergenic 25.0%
! ATGTTCCGTACAAATAAAAA+AGG - chr2_3:49850239-49850258 None:intergenic 25.0%
! AAGAATAATCATATTAGGCA+TGG - chr2_3:49850644-49850663 None:intergenic 25.0%
! AAAAAACATTTCTTTGCTCT+CGG - chr2_3:49850720-49850739 None:intergenic 25.0%
! GAAGGAGAATGTTATATAAT+AGG - chr2_3:49851230-49851249 None:intergenic 25.0%
! GTTCGCTATTTAATAAAAAC+TGG + chr2_3:49851579-49851598 Msa0296490:CDS 25.0%
! CTATTTAATAAAAACTGGAG+AGG + chr2_3:49851584-49851603 Msa0296490:CDS 25.0%
! TTAAAAAAGACCAAAACCAA+AGG - chr2_3:49851844-49851863 None:intergenic 25.0%
! ATAATCAAAACATCCTTTGT+CGG - chr2_3:49851936-49851955 None:intergenic 25.0%
!!! ACAAAGGATGTTTTGATTAT+TGG + chr2_3:49851936-49851955 Msa0296490:three_prime_UTR 25.0%
!!! CAAAGGATGTTTTGATTATT+GGG + chr2_3:49851937-49851956 Msa0296490:three_prime_UTR 25.0%
! GTTGTTTACAATTCCAAAAA+TGG - chr2_3:49851976-49851995 None:intergenic 25.0%
TGTTACAACAACAACAACAA+TGG + chr2_3:49848133-49848152 Msa0296490:exon 30.0%
CTAATAGTCATGCTAGAAAA+TGG - chr2_3:49848711-49848730 None:intergenic 30.0%
TATTAAGGCTTAGTTGGAAA+TGG - chr2_3:49848913-49848932 None:intergenic 30.0%
TAAATGCAAAAGTAGCAGAT+AGG - chr2_3:49848979-49848998 None:intergenic 30.0%
!!! TATCTGCTACTTTTGCATTT+AGG + chr2_3:49848978-49848997 Msa0296490:intron 30.0%
!! CTACTTTTGCATTTAGGAAT+TGG + chr2_3:49848984-49849003 Msa0296490:intron 30.0%
!!! TTATTGCTTTGTTTTACTGC+CGG + chr2_3:49849030-49849049 Msa0296490:intron 30.0%
TGTGTCAGTAAAATATGTTC+CGG - chr2_3:49849052-49849071 None:intergenic 30.0%
TTTCGTCCATTAATTAGTTC+CGG + chr2_3:49849164-49849183 Msa0296490:intron 30.0%
AATGCATTGTTCTCAAATAG+CGG + chr2_3:49849337-49849356 Msa0296490:intron 30.0%
ATCAAGTGAGAGAAAAGATA+AGG - chr2_3:49849635-49849654 None:intergenic 30.0%
TTAGAGATGGACACAAATTA+TGG + chr2_3:49849669-49849688 Msa0296490:intron 30.0%
!! TTCTCTCTAAAATTTGGATC+CGG - chr2_3:49849723-49849742 None:intergenic 30.0%
GAAGATCAAAGAGAAAGAAA+AGG + chr2_3:49849740-49849759 Msa0296490:intron 30.0%
!!! AGACACTTATTTTGGTAAGA+AGG + chr2_3:49849786-49849805 Msa0296490:intron 30.0%
!!! TTATTTTGGTAAGAAGGAGA+TGG + chr2_3:49849792-49849811 Msa0296490:intron 30.0%
ATAGCCACAAATTATGGAAA+GGG + chr2_3:49849862-49849881 Msa0296490:intron 30.0%
TATATTATAACCCTGTAGCA+CGG - chr2_3:49849912-49849931 None:intergenic 30.0%
!! AATATGAGAGTATTACTCAC+TGG - chr2_3:49850165-49850184 None:intergenic 30.0%
! ACAAATAAAAAAGGGTATGG+AGG - chr2_3:49850230-49850249 None:intergenic 30.0%
CGTACAAATAAAAAAGGGTA+TGG - chr2_3:49850233-49850252 None:intergenic 30.0%
TTGACTTAATTCAACCACTA+TGG + chr2_3:49850277-49850296 Msa0296490:intron 30.0%
TGACTTAATTCAACCACTAT+GGG + chr2_3:49850278-49850297 Msa0296490:intron 30.0%
TAAACAATCAGATTTCAGTC+TGG - chr2_3:49850459-49850478 None:intergenic 30.0%
TGAAATCTGATTGTTTAGCA+AGG + chr2_3:49850462-49850481 Msa0296490:intron 30.0%
!! TGTTTTTATTGGTGATATGC+AGG + chr2_3:49850556-49850575 Msa0296490:intron 30.0%
!! GTTTTTATTGGTGATATGCA+GGG + chr2_3:49850557-49850576 Msa0296490:intron 30.0%
CATAAGAAGACATCGTTTAT+AGG + chr2_3:49850821-49850840 Msa0296490:intron 30.0%
!! GTTCTGTTTCTTTTCTTTTC+TGG + chr2_3:49850900-49850919 Msa0296490:intron 30.0%
CACAAATTGCATGTTAAAGT+TGG + chr2_3:49850977-49850996 Msa0296490:CDS 30.0%
! ATAACCTTATTTATTTGCCC+TGG - chr2_3:49851142-49851161 None:intergenic 30.0%
!! TGATTGATAGTGTAGAGAAT+TGG + chr2_3:49851607-49851626 Msa0296490:CDS 30.0%
!!! TGGATTTGTTTTTTGTCCTT+TGG + chr2_3:49851825-49851844 Msa0296490:three_prime_UTR 30.0%
!!! TGTTTTTTGTCCTTTGGTTT+TGG + chr2_3:49851831-49851850 Msa0296490:three_prime_UTR 30.0%
!! TCTGCTTCTGATGATGATTT+TGG - chr2_3:49848083-49848102 None:intergenic 35.0%
! TGTTGTTGTTGTTGTAACAG+TGG - chr2_3:49848132-49848151 None:intergenic 35.0%
AACAACAACAATGGTAGCTA+TGG + chr2_3:49848142-49848161 Msa0296490:exon 35.0%
AGACAATGAATCACAAACAC+AGG - chr2_3:49848667-49848686 None:intergenic 35.0%
AGACAGTCACAAATTTCGAT+AGG + chr2_3:49848804-49848823 Msa0296490:intron 35.0%
ACATCTAGTGCATATGAAGA+AGG + chr2_3:49848839-49848858 Msa0296490:intron 35.0%
!! TGAATCAGCCGTTTTCAATT+TGG + chr2_3:49849115-49849134 Msa0296490:intron 35.0%
AGTTCACCGGAACTAATTAA+TGG - chr2_3:49849173-49849192 None:intergenic 35.0%
TAATTAGTTCCGGTGAACTT+TGG + chr2_3:49849174-49849193 Msa0296490:intron 35.0%
TGTAGGCTGATTGATCAAAA+GGG - chr2_3:49849272-49849291 None:intergenic 35.0%
TTGTAGGCTGATTGATCAAA+AGG - chr2_3:49849273-49849292 None:intergenic 35.0%
ATAACAGTGCTACAGCAAAA+TGG + chr2_3:49849362-49849381 Msa0296490:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG - chr2_3:49849526-49849545 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG - chr2_3:49849525-49849544 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr2_3:49849525-49849544 Msa0296490:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr2_3:49849526-49849545 Msa0296490:intron 35.0%
! AGAGAGGTAGACACTTATTT+TGG + chr2_3:49849778-49849797 Msa0296490:intron 35.0%
CTCACTAAAGTTTGGCAAAA+TGG - chr2_3:49849840-49849859 None:intergenic 35.0%
TGAGAGATAGCCACAAATTA+TGG + chr2_3:49849856-49849875 Msa0296490:intron 35.0%
GATAGCCACAAATTATGGAA+AGG + chr2_3:49849861-49849880 Msa0296490:intron 35.0%
TAGCCACAAATTATGGAAAG+GGG + chr2_3:49849863-49849882 Msa0296490:intron 35.0%
CTATCCTAGTTTCGCTATTA+GGG + chr2_3:49849980-49849999 Msa0296490:intron 35.0%
CAACTGTGCAATAGAAGAAA+AGG + chr2_3:49850045-49850064 Msa0296490:intron 35.0%
AGCATAGCTTACATGCATAA+AGG - chr2_3:49850204-49850223 None:intergenic 35.0%
ATACGACATTGCTTATCTGT+CGG - chr2_3:49850587-49850606 None:intergenic 35.0%
AGCAATGTCGTATTGTAATG+AGG + chr2_3:49850594-49850613 Msa0296490:CDS 35.0%
GCAATGTCGTATTGTAATGA+GGG + chr2_3:49850595-49850614 Msa0296490:CDS 35.0%
!!! AGAAATGTTTTTTCCGTCAG+TGG + chr2_3:49850727-49850746 Msa0296490:intron 35.0%
!! TTTTCTGGTAGCTTAAACGA+TGG + chr2_3:49850915-49850934 Msa0296490:intron 35.0%
! TTTCTGGTAGCTTAAACGAT+GGG + chr2_3:49850916-49850935 Msa0296490:intron 35.0%
ACATGCAATTTGTGTAACAC+TGG - chr2_3:49850971-49850990 None:intergenic 35.0%
GATACTGTGAAAGTCATTTC+AGG + chr2_3:49851001-49851020 Msa0296490:CDS 35.0%
AGTCATTTCAGGACATGAAA+AGG + chr2_3:49851012-49851031 Msa0296490:CDS 35.0%
GTCATTTCAGGACATGAAAA+GGG + chr2_3:49851013-49851032 Msa0296490:CDS 35.0%
ATAACATTCTCCTTCGTTTG+AGG + chr2_3:49851235-49851254 Msa0296490:intron 35.0%
TAACATTCTCCTTCGTTTGA+GGG + chr2_3:49851236-49851255 Msa0296490:intron 35.0%
! ATCCTGGTTGGAACAAATTT+TGG + chr2_3:49851272-49851291 Msa0296490:intron 35.0%
! TCTTTTCTCGAGAAACTTGA+GGG + chr2_3:49851340-49851359 Msa0296490:intron 35.0%
!! TTTTGGTGCATTTCTTCTCA+TGG + chr2_3:49851419-49851438 Msa0296490:intron 35.0%
! CAATCTGAAATTCAAGGCAA+TGG - chr2_3:49851464-49851483 None:intergenic 35.0%
TGCCTTGAATTTCAGATTGA+AGG + chr2_3:49851465-49851484 Msa0296490:intron 35.0%
! GACCTTCAATCTGAAATTCA+AGG - chr2_3:49851470-49851489 None:intergenic 35.0%
ATCACATTTGAACTGTGGAT+AGG - chr2_3:49851492-49851511 None:intergenic 35.0%
CAAGAACTTTATGACCTACA+CGG - chr2_3:49851545-49851564 None:intergenic 35.0%
GGTCATAAAGTTCTTGACAA+TGG + chr2_3:49851549-49851568 Msa0296490:CDS 35.0%
AGAGAATTGGAAGAAACTGA+AGG + chr2_3:49851620-49851639 Msa0296490:CDS 35.0%
TTGTGTATGGAGATCAACAT+AGG - chr2_3:49851795-49851814 None:intergenic 35.0%
! CCAATTACTCAAGTTGTGTA+TGG - chr2_3:49851808-49851827 None:intergenic 35.0%
CCATACACAACTTGAGTAAT+TGG + chr2_3:49851805-49851824 Msa0296490:three_prime_UTR 35.0%
AACTCTCAATGTAGACTTGT+CGG + chr2_3:49851905-49851924 Msa0296490:three_prime_UTR 35.0%
AACAATGGTAGCTATGGCTA+TGG + chr2_3:49848148-49848167 Msa0296490:exon 40.0%
ATGGATGAAGTGTGAGAGAA+TGG - chr2_3:49848274-49848293 None:intergenic 40.0%
GACACGACATTAACATGTGT+TGG - chr2_3:49848645-49848664 None:intergenic 40.0%
GAGAGGATCAAGAAAGAGAT+AGG - chr2_3:49849560-49849579 None:intergenic 40.0%
TTATGGAAGAAGAGAGTGAG+TGG + chr2_3:49849686-49849705 Msa0296490:intron 40.0%
GGCTATCTCTCACTAAAGTT+TGG - chr2_3:49849848-49849867 None:intergenic 40.0%
AGCCACAAATTATGGAAAGG+GGG + chr2_3:49849864-49849883 Msa0296490:intron 40.0%
GCTATCCTAGTTTCGCTATT+AGG + chr2_3:49849979-49849998 Msa0296490:intron 40.0%
ATTGCCCTAATAGCGAAACT+AGG - chr2_3:49849987-49850006 None:intergenic 40.0%
TTTCGCTATTAGGGCAATAG+CGG + chr2_3:49849989-49850008 Msa0296490:intron 40.0%
AAATAGCTGAACTCCCATAG+TGG - chr2_3:49850294-49850313 None:intergenic 40.0%
AGAGTATGAAATGCCACTGA+CGG - chr2_3:49850743-49850762 None:intergenic 40.0%
GCAATTTGTGTAACACTGGA+AGG - chr2_3:49850967-49850986 None:intergenic 40.0%
CATGTGAAGAGTAGAGAAGA+GGG + chr2_3:49851112-49851131 Msa0296490:CDS 40.0%
ATGTGAAGAGTAGAGAAGAG+GGG + chr2_3:49851113-49851132 Msa0296490:CDS 40.0%
GGAACCAGGGCAAATAAATA+AGG + chr2_3:49851135-49851154 Msa0296490:CDS 40.0%
! GACCAAAATTTGTTCCAACC+AGG - chr2_3:49851277-49851296 None:intergenic 40.0%
CTCAAGTTTCTCGAGAAAAG+AGG - chr2_3:49851341-49851360 None:intergenic 40.0%
! CTCTTTTCTCGAGAAACTTG+AGG + chr2_3:49851339-49851358 Msa0296490:intron 40.0%
! AGAGCATCACATTTGAACTG+TGG - chr2_3:49851497-49851516 None:intergenic 40.0%
TCAAAACATCCTTTGTCGGA+AGG - chr2_3:49851932-49851951 None:intergenic 40.0%
GCAGAAGCAGAAAGAAGAAG+AGG + chr2_3:49848098-49848117 Msa0296490:five_prime_UTR 45.0%
GAAGAAAGAGTTGGAGGAGA+GGG - chr2_3:49848204-49848223 None:intergenic 45.0%
CTCTCCTCCAACTCTTTCTT+CGG + chr2_3:49848203-49848222 Msa0296490:CDS 45.0%
AGAAGAGGAGAGAGAGTGAT+GGG - chr2_3:49848242-49848261 None:intergenic 45.0%
AAGAAGAGGAGAGAGAGTGA+TGG - chr2_3:49848243-49848262 None:intergenic 45.0%
AGTGTGAGAGAATGGAGTAC+CGG - chr2_3:49848266-49848285 None:intergenic 45.0%
AACACGAAATGGTACTACCC+AGG - chr2_3:49848416-49848435 None:intergenic 45.0%
ACGTCAATGCTTCTGATCGA+AGG + chr2_3:49848584-49848603 Msa0296490:intron 45.0%
TCCTTCCAAAATACTCCCTC+CGG + chr2_3:49849391-49849410 Msa0296490:intron 45.0%
AAGAAGAGAGTGAGTGGAAG+TGG + chr2_3:49849692-49849711 Msa0296490:intron 45.0%
GTGAGAAGATCAATCGAGAG+AGG + chr2_3:49849762-49849781 Msa0296490:intron 45.0%
AGAAGGAGATGGAGAGTGAT+TGG + chr2_3:49849803-49849822 Msa0296490:intron 45.0%
TGGAGAGTGATTGGAAGAAG+AGG + chr2_3:49849812-49849831 Msa0296490:intron 45.0%
GCCACAAATTATGGAAAGGG+GGG + chr2_3:49849865-49849884 Msa0296490:intron 45.0%
CCACAAATTATGGAAAGGGG+GGG + chr2_3:49849866-49849885 Msa0296490:intron 45.0%
CACAAATTATGGAAAGGGGG+GGG + chr2_3:49849867-49849886 Msa0296490:intron 45.0%
TGTAACACTGGAAGGCTGTT+TGG - chr2_3:49850959-49850978 None:intergenic 45.0%
GGACATGAAAAGGGTCAAGT+CGG + chr2_3:49851022-49851041 Msa0296490:CDS 45.0%
GACATGAAAAGGGTCAAGTC+GGG + chr2_3:49851023-49851042 Msa0296490:CDS 45.0%
ACATGAAAAGGGTCAAGTCG+GGG + chr2_3:49851024-49851043 Msa0296490:CDS 45.0%
GCATGTGAAGAGTAGAGAAG+AGG + chr2_3:49851111-49851130 Msa0296490:CDS 45.0%
TGTGAAGAGTAGAGAAGAGG+GGG + chr2_3:49851114-49851133 Msa0296490:CDS 45.0%
ACTCGAATTCCCTCAAACGA+AGG - chr2_3:49851248-49851267 None:intergenic 45.0%
! ATTCGAGTTCGAATCCTGGT+TGG + chr2_3:49851260-49851279 Msa0296490:intron 45.0%
TTTACCTCCCGACTGAAGTT+TGG + chr2_3:49851306-49851325 Msa0296490:intron 45.0%
TGGCAATCCAAACTTCAGTC+GGG - chr2_3:49851316-49851335 None:intergenic 45.0%
GTGGCAATCCAAACTTCAGT+CGG - chr2_3:49851317-49851336 None:intergenic 45.0%
CGAAGAAAGAGTTGGAGGAG+AGG - chr2_3:49848205-49848224 None:intergenic 50.0%
CACTCTCTCTCCTCTTCTTC+CGG + chr2_3:49848244-49848263 Msa0296490:CDS 50.0%
!! GAATGGAGTACCGGAAGAAG+AGG - chr2_3:49848257-49848276 None:intergenic 50.0%
TCTGCTGCACCAAAGTTCAC+CGG - chr2_3:49849186-49849205 None:intergenic 50.0%
!!! ACCGGAGGGAGTATTTTGGA+AGG - chr2_3:49849395-49849414 None:intergenic 50.0%
!!! AAGGACCGGAGGGAGTATTT+TGG - chr2_3:49849399-49849418 None:intergenic 50.0%
AGATAGGCACATACTCCCTC+CGG - chr2_3:49849544-49849563 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_3:49849575-49849594 None:intergenic 50.0%
AAGAGAGTGAGTGGAAGTGG+AGG + chr2_3:49849695-49849714 Msa0296490:intron 50.0%
CCCCCCCTTTCCATAATTTG+TGG - chr2_3:49849869-49849888 None:intergenic 50.0%
ATAACCCTGTAGCACGGATC+CGG - chr2_3:49849906-49849925 None:intergenic 50.0%
GCTTAAACGATGGGAGCGAA+AGG + chr2_3:49850925-49850944 Msa0296490:intron 50.0%
! GGGAATTCGAGTTCGAATCC+TGG + chr2_3:49851256-49851275 Msa0296490:intron 50.0%
CAATCCAAACTTCAGTCGGG+AGG - chr2_3:49851313-49851332 None:intergenic 50.0%
GTTTCTCGAGAAAAGAGGCG+TGG - chr2_3:49851336-49851355 None:intergenic 50.0%
GGAGAGGGAAAGTGAGGTCA+TGG - chr2_3:49848189-49848208 None:intergenic 55.0%
GTTGGAGGAGAGGGAAAGTG+AGG - chr2_3:49848195-49848214 None:intergenic 55.0%
CTGGCCGAAGAAAGAGTTGG+AGG - chr2_3:49848210-49848229 None:intergenic 55.0%
! AGGCTGGCCGAAGAAAGAGT+TGG - chr2_3:49848213-49848232 None:intergenic 55.0%
! GAGAGAGTGATGGGAGAGAG+AGG - chr2_3:49848233-49848252 None:intergenic 55.0%
GTGAGTGGAAGTGGAGGATC+CGG + chr2_3:49849701-49849720 Msa0296490:intron 55.0%
TGAAAAGGGTCAAGTCGGGG+AGG + chr2_3:49851027-49851046 Msa0296490:CDS 55.0%
AGTAGAGAAGAGGGGGAACC+AGG + chr2_3:49851121-49851140 Msa0296490:CDS 55.0%
GTAGAGAAGAGGGGGAACCA+GGG + chr2_3:49851122-49851141 Msa0296490:CDS 55.0%
AAGAATGTCGCGAGCCGTGT+AGG + chr2_3:49851528-49851547 Msa0296490:CDS 55.0%
CTTGTCGGTCCTTCCGACAA+AGG + chr2_3:49851920-49851939 Msa0296490:three_prime_UTR 55.0%
! GAGTGATGGGAGAGAGAGGC+TGG - chr2_3:49848229-49848248 None:intergenic 60.0%
GAAAGGGGGGGGAGAAGAAG+AGG + chr2_3:49849878-49849897 Msa0296490:intron 60.0%
GGGGGGAGAAGAAGAGGATC+CGG + chr2_3:49849884-49849903 Msa0296490:intron 60.0%
AGGATCCGGATCCGTGCTAC+AGG + chr2_3:49849898-49849917 Msa0296490:intron 60.0%
GGATCCGGATCCGTGCTACA+GGG + chr2_3:49849899-49849918 Msa0296490:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 49848078 49852002 49848078 ID=Msa0296490;Name=Msa0296490
chr2_3 mRNA 49848078 49852002 49848078 ID=Msa0296490-mRNA-1;Parent=Msa0296490;Name=Msa0296490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=74|1|1|1|1|1|4|322|194
chr2_3 exon 49848078 49848265 49848078 ID=Msa0296490-mRNA-1:exon:15649;Parent=Msa0296490-mRNA-1
chr2_3 exon 49850578 49850616 49850578 ID=Msa0296490-mRNA-1:exon:15650;Parent=Msa0296490-mRNA-1
chr2_3 exon 49850926 49851156 49850926 ID=Msa0296490-mRNA-1:exon:15651;Parent=Msa0296490-mRNA-1
chr2_3 exon 49851480 49852002 49851480 ID=Msa0296490-mRNA-1:exon:15652;Parent=Msa0296490-mRNA-1
chr2_3 five_prime_UTR 49848078 49848151 49848078 ID=Msa0296490-mRNA-1:five_prime_utr;Parent=Msa0296490-mRNA-1
chr2_3 CDS 49848152 49848265 49848152 ID=Msa0296490-mRNA-1:cds;Parent=Msa0296490-mRNA-1
chr2_3 CDS 49850578 49850616 49850578 ID=Msa0296490-mRNA-1:cds;Parent=Msa0296490-mRNA-1
chr2_3 CDS 49850926 49851156 49850926 ID=Msa0296490-mRNA-1:cds;Parent=Msa0296490-mRNA-1
chr2_3 CDS 49851480 49851680 49851480 ID=Msa0296490-mRNA-1:cds;Parent=Msa0296490-mRNA-1
chr2_3 three_prime_UTR 49851681 49852002 49851681 ID=Msa0296490-mRNA-1:three_prime_utr;Parent=Msa0296490-mRNA-1
Gene Sequence

>Msa0296490

ATGGTAGCTATGGCTATGGCTTCTCTTCAAAGTTCCATGACCTCACTTTCCCTCTCCTCCAACTCTTTCTTCGGCCAGCCTCTCTCTCCCATCACTCTCTCTCCTCTTCTTCCGGGTAAGCCGACAGATAAGCAATGTCGTATTGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAACCAAACAGCCTTCCAGTGTTACACAAATTGCATGTTAAAGTTGGAGATACTGTGAAAGTCATTTCAGGACATGAAAAGGGTCAAGTCGGGGAGGTTACTAAGATCTTCAAGCACAACAGCACTATCATTGTCAAAGACATAAACTTGAAGACAAAGCATGTGAAGAGTAGAGAAGAGGGGGAACCAGGGCAAATAAATAAGATTGAAGGTCCTATCCACAGTTCAAATGTGATGCTCTACTCTAAAGAAAAGAATGTCGCGAGCCGTGTAGGTCATAAAGTTCTTGACAATGGTAAAAAAGTTCGCTATTTAATAAAAACTGGAGAGGTGATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGCTACTAAAAAAACTGAAGAAGTTGTTGCTGCCTAG

Protein sequence

>Msa0296490

MVAMAMASLQSSMTSLSLSSNSFFGQPLSPITLSPLLPGKPTDKQCRIVMRLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQVGEVTKIFKHNSTIIVKDINLKTKHVKSREEGEPGQINKIEGPIHSSNVMLYSKEKNVASRVGHKVLDNGKKVRYLIKTGEVIDSVENWKKLKEATKKTEEVVAA*