Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410880 | sp|A1L4Y1|GET3B_ARATH | 83.836 | 365 | 58 | 1 | 42 | 406 | 48 | 411 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410880 | G7I505 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 809 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044320 | Msa1410880 | 0.800114 | 1.677438e-48 | -8.615850e-47 |
| Msa0046360 | Msa1410880 | 0.820073 | 8.317123e-53 | -8.615850e-47 |
| Msa0046410 | Msa1410880 | 0.878068 | 3.786262e-69 | -8.615850e-47 |
| Msa0056160 | Msa1410880 | 0.805971 | 1.031841e-49 | -8.615850e-47 |
| Msa0085130 | Msa1410880 | 0.840372 | 9.045738e-58 | -8.615850e-47 |
| Msa0116260 | Msa1410880 | 0.863321 | 2.705270e-64 | -8.615850e-47 |
| Msa1384980 | Msa1410880 | 0.837313 | 5.594058e-57 | -8.615850e-47 |
| Msa1408190 | Msa1410880 | 0.800231 | 1.587894e-48 | -8.615850e-47 |
| Msa1410880 | Msa1413360 | 0.801986 | 6.950289e-49 | -8.615850e-47 |
| Msa1410880 | Msa1432250 | 0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa1410880 | Msa1448990 | 0.801668 | 8.076491e-49 | -8.615850e-47 |
| Msa0606680 | Msa1410880 | 0.800142 | 1.655326e-48 | -8.615850e-47 |
| Msa0687320 | Msa1410880 | 0.818168 | 2.255920e-52 | -8.615850e-47 |
| Msa0701460 | Msa1410880 | 0.808212 | 3.459795e-50 | -8.615850e-47 |
| Msa0701530 | Msa1410880 | 0.810419 | 1.163600e-50 | -8.615850e-47 |
| Msa0703150 | Msa1410880 | 0.815006 | 1.153130e-51 | -8.615850e-47 |
| Msa0729590 | Msa1410880 | 0.801741 | 7.802523e-49 | -8.615850e-47 |
| Msa0734760 | Msa1410880 | 0.808729 | 2.683905e-50 | -8.615850e-47 |
| Msa0796610 | Msa1410880 | 0.803423 | 3.511487e-49 | -8.615850e-47 |
| Msa0813630 | Msa1410880 | 0.811234 | 7.752669e-51 | -8.615850e-47 |
| Msa0130920 | Msa1410880 | 0.867877 | 9.895988e-66 | -8.615850e-47 |
| Msa0146600 | Msa1410880 | 0.815741 | 7.912453e-52 | -8.615850e-47 |
| Msa0153640 | Msa1410880 | 0.801698 | 7.962488e-49 | -8.615850e-47 |
| Msa0173280 | Msa1410880 | 0.805882 | 1.076833e-49 | -8.615850e-47 |
| Msa0184850 | Msa1410880 | 0.841628 | 4.234341e-58 | -8.615850e-47 |
| Msa1228280 | Msa1410880 | 0.800997 | 1.108126e-48 | -8.615850e-47 |
| Msa1230190 | Msa1410880 | 0.802387 | 5.746311e-49 | -8.615850e-47 |
| Msa1240090 | Msa1410880 | 0.809844 | 1.547941e-50 | -8.615850e-47 |
| Msa1319720 | Msa1410880 | 0.833908 | 4.069188e-56 | -8.615850e-47 |
| Msa0378670 | Msa1410880 | 0.808542 | 2.942191e-50 | -8.615850e-47 |
| Msa0387790 | Msa1410880 | 0.802617 | 5.153910e-49 | -8.615850e-47 |
| Msa0400900 | Msa1410880 | 0.843962 | 1.014579e-58 | -8.615850e-47 |
| Msa0411260 | Msa1410880 | 0.805612 | 1.227298e-49 | -8.615850e-47 |
| Msa0447830 | Msa1410880 | 0.807124 | 5.891539e-50 | -8.615850e-47 |
| Msa0463580 | Msa1410880 | 0.814988 | 1.163594e-51 | -8.615850e-47 |
| Msa0469270 | Msa1410880 | 0.807170 | 5.762042e-50 | -8.615850e-47 |
| Msa1004140 | Msa1410880 | 0.821423 | 4.070171e-53 | -8.615850e-47 |
| Msa1101300 | Msa1410880 | 0.801893 | 7.264223e-49 | -8.615850e-47 |
| Msa0243160 | Msa1410880 | 0.817049 | 4.033941e-52 | -8.615850e-47 |
| Msa0292150 | Msa1410880 | 0.818209 | 2.209046e-52 | -8.615850e-47 |
| Msa0311570 | Msa1410880 | 0.818105 | 2.331134e-52 | -8.615850e-47 |
| Msa0330370 | Msa1410880 | 0.804871 | 1.754297e-49 | -8.615850e-47 |
| Msa0335860 | Msa1410880 | 0.814350 | 1.611372e-51 | -8.615850e-47 |
| Msa1130660 | Msa1410880 | 0.825006 | 5.930342e-54 | -8.615850e-47 |
| Msa1130730 | Msa1410880 | 0.803686 | 3.096763e-49 | -8.615850e-47 |
| Msa1134230 | Msa1410880 | 0.803312 | 3.702159e-49 | -8.615850e-47 |
| Msa1144420 | Msa1410880 | 0.831594 | 1.527787e-55 | -8.615850e-47 |
| Msa1182400 | Msa1410880 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa1182480 | Msa1410880 | 0.815294 | 9.952597e-52 | -8.615850e-47 |
| Msa1183730 | Msa1410880 | 0.843502 | 1.346780e-58 | -8.615850e-47 |
| Msa1209790 | Msa1410880 | 0.806905 | 6.553418e-50 | -8.615850e-47 |
| Msa1209800 | Msa1410880 | 0.812331 | 4.473963e-51 | -8.615850e-47 |
| Msa0487860 | Msa1410880 | 0.800212 | 1.602010e-48 | -8.615850e-47 |
| Msa0493430 | Msa1410880 | 0.825244 | 5.208839e-54 | -8.615850e-47 |
| Msa0512310 | Msa1410880 | 0.807957 | 3.920558e-50 | -8.615850e-47 |
| Msa0853920 | Msa1410880 | 0.800890 | 1.165584e-48 | -8.615850e-47 |
| Msa0861560 | Msa1410880 | 0.804073 | 2.573795e-49 | -8.615850e-47 |
| Msa0865280 | Msa1410880 | 0.807185 | 5.720157e-50 | -8.615850e-47 |
| Msa0868040 | Msa1410880 | 0.875018 | 4.288437e-68 | -8.615850e-47 |
| Msa0905170 | Msa1410880 | 0.809360 | 1.966049e-50 | -8.615850e-47 |
| Msa0912110 | Msa1410880 | 0.808510 | 2.989852e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410880 | MtrunA17_Chr1g0199481 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 809 |
| Msa1410880 | MtrunA17_Chr4g0028631 | 66.762 | 349 | 111 | 3 | 58 | 406 | 38 | 381 | 5.13e-174 | 491 |
| Msa1410880 | MtrunA17_Chr8g0350831 | 31.410 | 312 | 173 | 11 | 93 | 398 | 32 | 308 | 4.87e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410880 | AT3G10350.1 | 83.836 | 365 | 58 | 1 | 42 | 406 | 48 | 411 | 0.0 | 606 |
| Msa1410880 | AT3G10350.2 | 83.046 | 348 | 49 | 3 | 59 | 406 | 96 | 433 | 0.0 | 563 |
| Msa1410880 | AT5G60730.1 | 65.242 | 351 | 117 | 2 | 57 | 406 | 45 | 391 | 2.50e-150 | 431 |
| Msa1410880 | AT1G01910.1 | 32.588 | 313 | 168 | 10 | 93 | 398 | 31 | 307 | 8.46e-36 | 135 |
| Msa1410880 | AT1G01910.4 | 32.588 | 313 | 168 | 10 | 93 | 398 | 31 | 307 | 8.46e-36 | 135 |
| Msa1410880 | AT1G01910.2 | 32.588 | 313 | 168 | 10 | 93 | 398 | 31 | 307 | 8.46e-36 | 135 |
| Msa1410880 | AT1G01910.3 | 31.922 | 307 | 166 | 10 | 93 | 392 | 31 | 301 | 4.92e-34 | 129 |
| Msa1410880 | AT1G01910.5 | 33.520 | 179 | 108 | 4 | 226 | 398 | 30 | 203 | 5.17e-22 | 94.7 |
Find 125 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCCTGCTCTCAAATTTC+TGG | 0.056203 | tig0023710:+10053 | Msa1410880:CDS |
| ATTGTCCTTGCCTGATTTCT+TGG | 0.156940 | tig0023710:+8763 | Msa1410880:CDS |
| AATTTCTGGGTGACATTATC+TGG | 0.197363 | tig0023710:+10067 | Msa1410880:CDS |
| CATATACAAGTTAGTTGATT+AGG | 0.201085 | tig0023710:-10451 | None:intergenic |
| ATCCTTTCTTTCTTTCGTTT+TGG | 0.228003 | tig0023710:-6262 | None:intergenic |
| TGTCCTGTGTGCTCTTGTTA+TGG | 0.247488 | tig0023710:-10319 | None:intergenic |
| GCTAAAACTGGGAGAGTTAC+TGG | 0.276118 | tig0023710:+8438 | Msa1410880:CDS |
| GTCCTGTGTGCTCTTGTTAT+GGG | 0.284709 | tig0023710:-10318 | None:intergenic |
| GCTGTTAAATTTGCAAATAA+TGG | 0.303414 | tig0023710:+7251 | Msa1410880:CDS |
| CTTCAATGAGGCACTCAATC+TGG | 0.311076 | tig0023710:-9660 | None:intergenic |
| GGGTTTGACGACATGGTTGC+TGG | 0.323204 | tig0023710:+7158 | Msa1410880:CDS |
| ATATACAAGTTAGTTGATTA+GGG | 0.325610 | tig0023710:-10450 | None:intergenic |
| GATGGTACAGGCTGACAAAT+TGG | 0.357327 | tig0023710:+9209 | Msa1410880:intron |
| TTCATGGATGGCATGGGTCT+TGG | 0.357627 | tig0023710:+7730 | Msa1410880:CDS |
| GAAAGGATTGAAGATGAATA+TGG | 0.364627 | tig0023710:+6277 | Msa1410880:exon |
| TGCTCCTACAGAATCTATAT+CGG | 0.365031 | tig0023710:+7136 | Msa1410880:CDS |
| AAATCTTCCCTAGCCTTCTC+AGG | 0.365946 | tig0023710:-7661 | None:intergenic |
| AGGAGATGGGGTGGGATGGA+AGG | 0.368060 | tig0023710:-6366 | None:intergenic |
| TACAAATATACAGTGAAAAC+TGG | 0.368654 | tig0023710:-10544 | None:intergenic |
| TCAGCTCTCATTCCCACACT+TGG | 0.371045 | tig0023710:+10485 | Msa1410880:three_prime_UTR |
| GTTCCTGCTCTCAAATTTCT+GGG | 0.399883 | tig0023710:+10054 | Msa1410880:CDS |
| GTGAAAACTGGCATTTCATA+TGG | 0.400480 | tig0023710:-10532 | None:intergenic |
| TACTGGAGTCAAAGATTTCA+TGG | 0.409294 | tig0023710:+7714 | Msa1410880:CDS |
| CTGACAAATTGGAGAAGCTT+AGG | 0.410433 | tig0023710:+9220 | Msa1410880:CDS |
| AGAGAGGAGATGGGGTGGGA+TGG | 0.416140 | tig0023710:-6370 | None:intergenic |
| ATCGATAAGCTGGAGAGTTC+TGG | 0.417848 | tig0023710:-9994 | None:intergenic |
| AAAGTTAGGAGAGCTAAAAC+TGG | 0.426921 | tig0023710:+8426 | Msa1410880:intron |
| CCGTGGACGTATTTGAATCA+AGG | 0.428656 | tig0023710:+6199 | None:intergenic |
| GAAGGAGAGAGCACCCTTGA+TGG | 0.430411 | tig0023710:-6348 | None:intergenic |
| TCTGCAATTAAATCTGTGTT+CGG | 0.431700 | tig0023710:+9090 | Msa1410880:CDS |
| AAGGAGGATGCTTTGTGAAA+AGG | 0.435733 | tig0023710:-6395 | None:intergenic |
| AAACAAAACGGTGGAAGTAC+TGG | 0.440568 | tig0023710:+7697 | Msa1410880:CDS |
| AACAAATTCAATGTCCATCA+AGG | 0.442476 | tig0023710:+6334 | Msa1410880:CDS |
| TGAAAAGGAAAGAGAGGAGA+TGG | 0.451049 | tig0023710:-6380 | None:intergenic |
| ATGGATGCATCCAAGAAATC+AGG | 0.451659 | tig0023710:-8773 | None:intergenic |
| AGAGCGAAAAGTGGATAATC+AGG | 0.455173 | tig0023710:-7477 | None:intergenic |
| CTGCAATTAAATCTGTGTTC+GGG | 0.456881 | tig0023710:+9091 | Msa1410880:CDS |
| AGACTTGGTGGGTTGCTTAG+TGG | 0.463437 | tig0023710:-6435 | None:intergenic |
| CAGCTCTCATTCCCACACTT+GGG | 0.466183 | tig0023710:+10486 | Msa1410880:three_prime_UTR |
| GCTCCTACAGAATCTATATC+GGG | 0.467326 | tig0023710:+7137 | Msa1410880:CDS |
| ACTTTACTATAGGATTTGAC+AGG | 0.468530 | tig0023710:+7429 | Msa1410880:intron |
| TACAGTCAAGTGGTAGCTGC+TGG | 0.476587 | tig0023710:+10361 | Msa1410880:three_prime_UTR |
| ACATGCTAGGTGGGAAAGGA+GGG | 0.481081 | tig0023710:+7198 | Msa1410880:CDS |
| CAACATCAACAAGTGGTGCT+TGG | 0.486618 | tig0023710:-10020 | None:intergenic |
| GGTTTGACGACATGGTTGCT+GGG | 0.490443 | tig0023710:+7159 | Msa1410880:CDS |
| TATTACATGCTAGGTGGGAA+AGG | 0.499703 | tig0023710:+7194 | Msa1410880:CDS |
| TACCTTTAGTATCTTCCCGA+TGG | 0.504784 | tig0023710:-8792 | None:intergenic |
| AGATAAACCCTGAGAAGGCT+AGG | 0.504802 | tig0023710:+7653 | Msa1410880:intron |
| TACATGCTAGGTGGGAAAGG+AGG | 0.505952 | tig0023710:+7197 | Msa1410880:CDS |
| GAAAAGGAAAGAGAGGAGAT+GGG | 0.506532 | tig0023710:-6379 | None:intergenic |
| GGATACACCTCCTCCTGGAC+TGG | 0.509204 | tig0023710:+8459 | Msa1410880:CDS |
| ATTTCTTGGATGCATCCATC+GGG | 0.509752 | tig0023710:+8777 | Msa1410880:CDS |
| TGCTTGGATCATCGATAAGC+TGG | 0.509888 | tig0023710:-10004 | None:intergenic |
| GGAAAGAGAGGAGATGGGGT+GGG | 0.511544 | tig0023710:-6374 | None:intergenic |
| CTTGTTGATGTTGAGATAAG+AGG | 0.512017 | tig0023710:+10030 | Msa1410880:CDS |
| CAAAGATTTCATGGATGGCA+TGG | 0.513368 | tig0023710:+7723 | Msa1410880:CDS |
| GATTTCTTGGATGCATCCAT+CGG | 0.513943 | tig0023710:+8776 | Msa1410880:CDS |
| CTAGGTGGGAAAGGAGGGGT+AGG | 0.517623 | tig0023710:+7203 | Msa1410880:CDS |
| AACCAAAACGAAAGAAAGAA+AGG | 0.518898 | tig0023710:+6260 | Msa1410880:five_prime_UTR |
| TATATCGGGGTTTGACGACA+TGG | 0.529417 | tig0023710:+7151 | Msa1410880:CDS |
| TCAGTGGAAACCACGAGAGT+AGG | 0.530042 | tig0023710:-7278 | None:intergenic |
| GGAGCATTGGTACAGGTGGA+TGG | 0.530531 | tig0023710:+7453 | Msa1410880:CDS |
| CAGTGGAAACCACGAGAGTA+GGG | 0.531494 | tig0023710:-7277 | None:intergenic |
| CGAGATGTAGCTAAACAAAA+CGG | 0.532507 | tig0023710:+7685 | Msa1410880:CDS |
| GAGAGGAAGTATTACATGCT+AGG | 0.533273 | tig0023710:+7185 | Msa1410880:CDS |
| CACTCGAATTGTATTCGATA+CGG | 0.537086 | tig0023710:+8632 | Msa1410880:CDS |
| AACGCTTTCTTTCTTCAATG+AGG | 0.537410 | tig0023710:-9672 | None:intergenic |
| TGACAAATTGGAGAAGCTTA+GGG | 0.538635 | tig0023710:+9221 | Msa1410880:CDS |
| AGGAAAGAGAGGAGATGGGG+TGG | 0.540088 | tig0023710:-6375 | None:intergenic |
| TCACCCAGAAATTTGAGAGC+AGG | 0.551277 | tig0023710:-10057 | None:intergenic |
| AAAACCTTGAAAAGACTTGG+TGG | 0.552040 | tig0023710:-6447 | None:intergenic |
| CGTGGACGTATTTGAATCAA+GGG | 0.552330 | tig0023710:+6200 | Msa1410880:five_prime_UTR |
| GGAAGTATTACATGCTAGGT+GGG | 0.558483 | tig0023710:+7189 | Msa1410880:CDS |
| TCTTGGAATGATAGTAGACC+AGG | 0.560237 | tig0023710:+7747 | Msa1410880:CDS |
| AATAAGCAAAAGCCCAAGTG+TGG | 0.561040 | tig0023710:-10498 | None:intergenic |
| ATCAGATTTATACAGTCAAG+TGG | 0.563363 | tig0023710:+10351 | Msa1410880:three_prime_UTR |
| GCTTTGTGAAAAGGAAAGAG+AGG | 0.563606 | tig0023710:-6386 | None:intergenic |
| TAGGTGGGAAAGGAGGGGTA+GGG | 0.563836 | tig0023710:+7204 | Msa1410880:CDS |
| CCTTGATTCAAATACGTCCA+CGG | 0.564975 | tig0023710:-6199 | None:intergenic |
| GAATCGCTCAAAGAATGTGC+AGG | 0.565427 | tig0023710:-7302 | None:intergenic |
| CTTACTTCAAGAGCGAAAAG+TGG | 0.566351 | tig0023710:-7486 | None:intergenic |
| TTACTGGATACACCTCCTCC+TGG | 0.568600 | tig0023710:+8454 | Msa1410880:CDS |
| TGAAGCTATTGCGATTTCCA+AGG | 0.574785 | tig0023710:+8483 | Msa1410880:CDS |
| CAAAGAATGTGCAGGATCAG+TGG | 0.575550 | tig0023710:-7294 | None:intergenic |
| ATCCATCGGGAAGATACTAA+AGG | 0.577762 | tig0023710:+8790 | Msa1410880:CDS |
| GGAGTCAAAGATTTCATGGA+TGG | 0.578877 | tig0023710:+7718 | Msa1410880:CDS |
| AATCTTCCCTAGCCTTCTCA+GGG | 0.579005 | tig0023710:-7660 | None:intergenic |
| GCAATAGCTTCATCCAGTCC+AGG | 0.580425 | tig0023710:-8472 | None:intergenic |
| TTACTATAGGATTTGACAGG+GGG | 0.581858 | tig0023710:+7432 | Msa1410880:intron |
| AAACCTTGAAAAGACTTGGT+GGG | 0.584998 | tig0023710:-6446 | None:intergenic |
| CAAGAGCACACAGGACATGA+AGG | 0.585891 | tig0023710:+10325 | Msa1410880:three_prime_UTR |
| TTGCAATCAGATGCGGATGG+TGG | 0.586447 | tig0023710:-9728 | None:intergenic |
| GAGAAGAAGCAGAAGAAGAG+TGG | 0.586591 | tig0023710:-6304 | None:intergenic |
| AATTGGAGAAGCTTAGGGAG+AGG | 0.591225 | tig0023710:+9226 | Msa1410880:CDS |
| TTGACAATGAGTCTCTTCAC+AGG | 0.595374 | tig0023710:-9695 | None:intergenic |
| AAAAGGAAAGAGAGGAGATG+GGG | 0.595407 | tig0023710:-6378 | None:intergenic |
| AAAGATTTCATGGATGGCAT+GGG | 0.595809 | tig0023710:+7724 | Msa1410880:CDS |
| GCTTCATCCAGTCCAGGAGG+AGG | 0.599686 | tig0023710:-8466 | None:intergenic |
| GATAAACCCTGAGAAGGCTA+GGG | 0.599812 | tig0023710:+7654 | Msa1410880:intron |
| ACAAATTCAATGTCCATCAA+GGG | 0.601941 | tig0023710:+6335 | Msa1410880:CDS |
| ATTACAGATAAACCCTGAGA+AGG | 0.606217 | tig0023710:+7648 | Msa1410880:intron |
| TGTTATTGTTACAATCCCCA+CGG | 0.608154 | tig0023710:+9296 | Msa1410880:CDS |
| CTTTACTATAGGATTTGACA+GGG | 0.609356 | tig0023710:+7430 | Msa1410880:intron |
| CATGCTAGGTGGGAAAGGAG+GGG | 0.610256 | tig0023710:+7199 | Msa1410880:CDS |
| CTTATCTCAACATCAACAAG+TGG | 0.612453 | tig0023710:-10027 | None:intergenic |
| AGGAAGTATTACATGCTAGG+TGG | 0.625352 | tig0023710:+7188 | Msa1410880:CDS |
| AGTCAAGTGGTAGCTGCTGG+AGG | 0.631627 | tig0023710:+10364 | Msa1410880:three_prime_UTR |
| TTTGTTGTCAGTGAGATCAG+TGG | 0.633537 | tig0023710:+7112 | Msa1410880:intron |
| GAACACAGATTTAATTGCAG+AGG | 0.636304 | tig0023710:-9088 | None:intergenic |
| TGCATCCAAGAAATCAGGCA+AGG | 0.637215 | tig0023710:-8768 | None:intergenic |
| ACATGGTTGCTGGGACTGAG+AGG | 0.644373 | tig0023710:+7168 | Msa1410880:CDS |
| ATAAGCAAAAGCCCAAGTGT+GGG | 0.649917 | tig0023710:-10497 | None:intergenic |
| AAGTTAGGAGAGCTAAAACT+GGG | 0.652686 | tig0023710:+8427 | Msa1410880:intron |
| ACAAAACTTGCAATCAGATG+CGG | 0.652947 | tig0023710:-9735 | None:intergenic |
| TAATGGACACCCTACTCTCG+TGG | 0.654345 | tig0023710:+7268 | Msa1410880:CDS |
| GGAAGCGTGCAAAGAAACAA+AGG | 0.662287 | tig0023710:-6414 | None:intergenic |
| AACCCCGATATAGATTCTGT+AGG | 0.670064 | tig0023710:-7140 | None:intergenic |
| TTTACTATAGGATTTGACAG+GGG | 0.676132 | tig0023710:+7431 | Msa1410880:intron |
| AACCCATAACAAGAGCACAC+AGG | 0.677515 | tig0023710:+10316 | Msa1410880:three_prime_UTR |
| CTCCTACAGAATCTATATCG+GGG | 0.677970 | tig0023710:+7138 | Msa1410880:CDS |
| AATCTTACAGCATCTTGACG+AGG | 0.694562 | tig0023710:-9123 | None:intergenic |
| GATGTAGCTAAACAAAACGG+TGG | 0.701807 | tig0023710:+7688 | Msa1410880:CDS |
| AACTTGCAATCAGATGCGGA+TGG | 0.702574 | tig0023710:-9731 | None:intergenic |
| AGCGTGCAAAGAAACAAAGG+AGG | 0.724675 | tig0023710:-6411 | None:intergenic |
| ATAGCTTCATCCAGTCCAGG+AGG | 0.738020 | tig0023710:-8469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAATTAAAT+GGG | + | tig0023710:6697-6716 | Msa1410880:intron | 0.0% |
| !!! | TTTAGATAATTTGTTTAATT+TGG | + | tig0023710:6737-6756 | Msa1410880:intron | 10.0% |
| !!! | ATTTTGAATCAATTAAATTA+AGG | - | tig0023710:8863-8882 | None:intergenic | 10.0% |
| !!! | CTTGTTATTAAATTGAATAT+TGG | + | tig0023710:6528-6547 | Msa1410880:intron | 15.0% |
| !! | AATAACTAGATGAATTAAAT+GGG | - | tig0023710:6589-6608 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAATTAAATGGGT+AGG | + | tig0023710:6701-6720 | Msa1410880:intron | 15.0% |
| !! | CATAAAATTTAAATAGCTTA+AGG | - | tig0023710:8294-8313 | None:intergenic | 15.0% |
| !! | ATCAATTAAATTAAGGAATA+TGG | - | tig0023710:8856-8875 | None:intergenic | 15.0% |
| !!! | AGTAAAAAAAAAAGTGTTAA+GGG | - | tig0023710:8978-8997 | None:intergenic | 15.0% |
| !!! | AAGTAAAAAAAAAAGTGTTA+AGG | - | tig0023710:8979-8998 | None:intergenic | 15.0% |
| !!! | GTTATTCAATTATTATTTCT+AGG | - | tig0023710:9327-9346 | None:intergenic | 15.0% |
| !! | TGTATTAAAAAAATACTTTC+TGG | - | tig0023710:10392-10411 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAAACATTCACT+GGG | - | tig0023710:6559-6578 | None:intergenic | 20.0% |
| !! | ATAAAAGAAAAAACATTCAC+TGG | - | tig0023710:6560-6579 | None:intergenic | 20.0% |
| !! | CAATAACTAGATGAATTAAA+TGG | - | tig0023710:6590-6609 | None:intergenic | 20.0% |
| !!! | TTTAATTTGGAGCATAATTT+AGG | + | tig0023710:6750-6769 | Msa1410880:intron | 20.0% |
| !! | TGGTTTAATTCTATTTCATA+TGG | + | tig0023710:6776-6795 | Msa1410880:intron | 20.0% |
| !!! | CAGAAAAGTTGTAATTTTAA+AGG | - | tig0023710:7851-7870 | None:intergenic | 20.0% |
| !!! | TTAGCTTTAACATGAATTTA+TGG | - | tig0023710:8217-8236 | None:intergenic | 20.0% |
| !! | TTAATTATCATATTTACCAC+CGG | + | tig0023710:8261-8280 | Msa1410880:intron | 20.0% |
| !!! | ATATTTCACATCTTTGTTTT+TGG | + | tig0023710:8686-8705 | Msa1410880:intron | 20.0% |
| !!! | ATTTGATTCGAAGTATATTT+TGG | - | tig0023710:10195-10214 | None:intergenic | 20.0% |
| !! | ATATACAAGTTAGTTGATTA+GGG | - | tig0023710:10453-10472 | None:intergenic | 20.0% |
| ! | AAAAAAACCTTGAAAAGACT+TGG | - | tig0023710:6453-6472 | None:intergenic | 25.0% |
| ! | ATTCATCTAGTTATTGCAAA+TGG | + | tig0023710:6594-6613 | Msa1410880:intron | 25.0% |
| ! | TTCATCTAGTTATTGCAAAT+GGG | + | tig0023710:6595-6614 | Msa1410880:intron | 25.0% |
| ! | AATTTAATGTAACCACTGTT+TGG | + | tig0023710:6857-6876 | Msa1410880:intron | 25.0% |
| ! | ATTTAATGTAACCACTGTTT+GGG | + | tig0023710:6858-6877 | Msa1410880:intron | 25.0% |
| ! | GCTGTTAAATTTGCAAATAA+TGG | + | tig0023710:7251-7270 | Msa1410880:CDS | 25.0% |
| ! | TCAAATCCTATAGTAAAGTA+GGG | - | tig0023710:7428-7447 | None:intergenic | 25.0% |
| ! | AACTATATGTGTACCATTTA+AGG | + | tig0023710:7601-7620 | Msa1410880:intron | 25.0% |
| ! | GTAAAACTTATTGAGATGTA+TGG | + | tig0023710:7769-7788 | Msa1410880:intron | 25.0% |
| !! | TTTTATGCTGTGAATTTTCA+AGG | + | tig0023710:7816-7835 | Msa1410880:intron | 25.0% |
| ! | ACATATCATTCACAAATGAT+AGG | + | tig0023710:7931-7950 | Msa1410880:intron | 25.0% |
| ! | TAAAAGGAATCGATATAGTT+AGG | + | tig0023710:8027-8046 | Msa1410880:intron | 25.0% |
| ! | TCAATACTATTACTCATTCT+AGG | - | tig0023710:8107-8126 | None:intergenic | 25.0% |
| !!! | CATGCATTTTTTATGCTTTA+TGG | + | tig0023710:8506-8525 | Msa1410880:intron | 25.0% |
| ! | ATTCAAGAAATTGTATAACC+TGG | - | tig0023710:8593-8612 | None:intergenic | 25.0% |
| ! | GATGTGAAATATTTAACTAC+TGG | - | tig0023710:8678-8697 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGTGTTAAGGGTA+GGG | - | tig0023710:8973-8992 | None:intergenic | 25.0% |
| !!! | AAAAAAAAAGTGTTAAGGGT+AGG | - | tig0023710:8974-8993 | None:intergenic | 25.0% |
| ! | TGCTGTAAGATTTATATTGT+TGG | + | tig0023710:9134-9153 | Msa1410880:intron | 25.0% |
| ! | GCTGTAAGATTTATATTGTT+GGG | + | tig0023710:9135-9154 | Msa1410880:intron | 25.0% |
| ! | TAACATTTGTCATATCTTGA+TGG | + | tig0023710:9191-9210 | Msa1410880:intron | 25.0% |
| ! | GAAGTTAAATATCATTCAGT+TGG | - | tig0023710:9538-9557 | None:intergenic | 25.0% |
| ! | AAACTTCATATTCATTGTGT+TGG | + | tig0023710:9572-9591 | Msa1410880:intron | 25.0% |
| ! | AATTCACTCTTCAAAACTTA+GGG | - | tig0023710:9914-9933 | None:intergenic | 25.0% |
| !! | CTTTTCTTTACTATCACTAT+TGG | + | tig0023710:10253-10272 | Msa1410880:intron | 25.0% |
| ! | CATATACAAGTTAGTTGATT+AGG | - | tig0023710:10454-10473 | None:intergenic | 25.0% |
| ! | TACAAATATACAGTGAAAAC+TGG | - | tig0023710:10547-10566 | None:intergenic | 25.0% |
| AACCAAAACGAAAGAAAGAA+AGG | + | tig0023710:6260-6279 | Msa1410880:five_prime_UTR | 30.0% | |
| ! | ATCCTTTCTTTCTTTCGTTT+TGG | - | tig0023710:6265-6284 | None:intergenic | 30.0% |
| GAAAGGATTGAAGATGAATA+TGG | + | tig0023710:6277-6296 | Msa1410880:exon | 30.0% | |
| AACAAATTCAATGTCCATCA+AGG | + | tig0023710:6334-6353 | Msa1410880:CDS | 30.0% | |
| ACAAATTCAATGTCCATCAA+GGG | + | tig0023710:6335-6354 | Msa1410880:CDS | 30.0% | |
| TAAAGAAAGAGACATCAAAG+AGG | + | tig0023710:6618-6637 | Msa1410880:intron | 30.0% | |
| AAAGAAAGAGACATCAAAGA+GGG | + | tig0023710:6619-6638 | Msa1410880:intron | 30.0% | |
| ! | TTTCTTATCATATTTTGCGC+TGG | + | tig0023710:6658-6677 | Msa1410880:intron | 30.0% |
| ! | ACTTCAAATTGAAGGTGTAT+CGG | - | tig0023710:6904-6923 | None:intergenic | 30.0% |
| TCAATGCTACATAAGCTAAT+GGG | + | tig0023710:6925-6944 | Msa1410880:intron | 30.0% | |
| TCTCACTGACAACAAAAATA+AGG | - | tig0023710:7108-7127 | None:intergenic | 30.0% | |
| ! | AGTTTTCCCTACTTTACTAT+AGG | + | tig0023710:7419-7438 | Msa1410880:intron | 30.0% |
| GTCAAATCCTATAGTAAAGT+AGG | - | tig0023710:7429-7448 | None:intergenic | 30.0% | |
| ACTTTACTATAGGATTTGAC+AGG | + | tig0023710:7429-7448 | Msa1410880:intron | 30.0% | |
| CTTTACTATAGGATTTGACA+GGG | + | tig0023710:7430-7449 | Msa1410880:intron | 30.0% | |
| TTTACTATAGGATTTGACAG+GGG | + | tig0023710:7431-7450 | Msa1410880:intron | 30.0% | |
| ATAAGCAGTGTAACCTTAAA+TGG | - | tig0023710:7617-7636 | None:intergenic | 30.0% | |
| ! | ACATCTCAATAAGTTTTACC+TGG | - | tig0023710:7768-7787 | None:intergenic | 30.0% |
| ATGGTTATGTATTTCATCCA+AGG | + | tig0023710:7788-7807 | Msa1410880:intron | 30.0% | |
| TGGTTATGTATTTCATCCAA+GGG | + | tig0023710:7789-7808 | Msa1410880:intron | 30.0% | |
| TTAGGAATAACATCTGTGTT+TGG | + | tig0023710:8045-8064 | Msa1410880:intron | 30.0% | |
| ATTCTTTGACTGCAAAAGTT+AGG | + | tig0023710:8412-8431 | Msa1410880:intron | 30.0% | |
| AACTGTTAGTAGAGTGAAAA+CGG | - | tig0023710:8558-8577 | None:intergenic | 30.0% | |
| CTTCTACTAAGTGAACAATA+AGG | + | tig0023710:8916-8935 | Msa1410880:intron | 30.0% | |
| TCTGCAATTAAATCTGTGTT+CGG | + | tig0023710:9090-9109 | Msa1410880:CDS | 30.0% | |
| ATTCCTGGTATAAATCCAAA+TGG | + | tig0023710:9424-9443 | Msa1410880:intron | 30.0% | |
| TTCCTGGTATAAATCCAAAT+GGG | + | tig0023710:9425-9444 | Msa1410880:intron | 30.0% | |
| ATATTCATTGTGTTGGAAAG+AGG | + | tig0023710:9579-9598 | Msa1410880:intron | 30.0% | |
| AAATATGTCTTTATTCCCCT+AGG | + | tig0023710:9616-9635 | Msa1410880:intron | 30.0% | |
| ! | GTTTTGTGCTATGAAAAGAA+AGG | + | tig0023710:9751-9770 | Msa1410880:CDS | 30.0% |
| GAATTCACTCTTCAAAACTT+AGG | - | tig0023710:9915-9934 | None:intergenic | 30.0% | |
| ATCAGATTTATACAGTCAAG+TGG | + | tig0023710:10351-10370 | Msa1410880:three_prime_UTR | 30.0% | |
| ! | AAACCTTGAAAAGACTTGGT+GGG | - | tig0023710:6449-6468 | None:intergenic | 35.0% |
| AAAACCTTGAAAAGACTTGG+TGG | - | tig0023710:6450-6469 | None:intergenic | 35.0% | |
| AAGAAAGAGACATCAAAGAG+GGG | + | tig0023710:6620-6639 | Msa1410880:intron | 35.0% | |
| TTGGAGCATAATTTAGGTGA+TGG | + | tig0023710:6756-6775 | Msa1410880:intron | 35.0% | |
| TTCATATGGATGATCGATGA+TGG | + | tig0023710:6790-6809 | Msa1410880:intron | 35.0% | |
| ! | GCATTGACACTTCAAATTGA+AGG | - | tig0023710:6912-6931 | None:intergenic | 35.0% |
| GTCAATGCTACATAAGCTAA+TGG | + | tig0023710:6924-6943 | Msa1410880:intron | 35.0% | |
| TTGACATTTCGTGATGTGTT+TGG | + | tig0023710:6981-7000 | Msa1410880:intron | 35.0% | |
| TGACATTTCGTGATGTGTTT+GGG | + | tig0023710:6982-7001 | Msa1410880:intron | 35.0% | |
| !! | ATGTGTTTGGGTTTTCTTTG+AGG | + | tig0023710:6994-7013 | Msa1410880:intron | 35.0% |
| TGCTCCTACAGAATCTATAT+CGG | + | tig0023710:7136-7155 | Msa1410880:CDS | 35.0% | |
| ACCTAGCTCATAAGTAACAT+CGG | - | tig0023710:7360-7379 | None:intergenic | 35.0% | |
| GAGCTAGGTGATTAAAATTC+TGG | + | tig0023710:7371-7390 | Msa1410880:intron | 35.0% | |
| TTACTATAGGATTTGACAGG+GGG | + | tig0023710:7432-7451 | Msa1410880:intron | 35.0% | |
| ATTACAGATAAACCCTGAGA+AGG | + | tig0023710:7648-7667 | Msa1410880:intron | 35.0% | |
| CGAGATGTAGCTAAACAAAA+CGG | + | tig0023710:7685-7704 | Msa1410880:CDS | 35.0% | |
| TACTGGAGTCAAAGATTTCA+TGG | + | tig0023710:7714-7733 | Msa1410880:CDS | 35.0% | |
| AAAGATTTCATGGATGGCAT+GGG | + | tig0023710:7724-7743 | Msa1410880:CDS | 35.0% | |
| CACAGCATAAAATATACCCT+TGG | - | tig0023710:7808-7827 | None:intergenic | 35.0% | |
| TAAGCAACTTGCCATCATAT+AGG | + | tig0023710:7895-7914 | Msa1410880:intron | 35.0% | |
| AAGCAGAATCAGTTATCTTC+TGG | - | tig0023710:8357-8376 | None:intergenic | 35.0% | |
| AAAGTTAGGAGAGCTAAAAC+TGG | + | tig0023710:8426-8445 | Msa1410880:intron | 35.0% | |
| AAGTTAGGAGAGCTAAAACT+GGG | + | tig0023710:8427-8446 | Msa1410880:intron | 35.0% | |
| AGCATAAAAAATGCATGCCT+TGG | - | tig0023710:8503-8522 | None:intergenic | 35.0% | |
| AATTGTATAACCTGGCAAGA+AGG | - | tig0023710:8585-8604 | None:intergenic | 35.0% | |
| CACTCGAATTGTATTCGATA+CGG | + | tig0023710:8632-8651 | Msa1410880:CDS | 35.0% | |
| ACTGGCATTATACTTACTGT+AGG | - | tig0023710:8660-8679 | None:intergenic | 35.0% | |
| ! | ATTTACCCATTTTCCTGAAC+AGG | + | tig0023710:8724-8743 | Msa1410880:intron | 35.0% |
| ! | TTTACCCATTTTCCTGAACA+GGG | + | tig0023710:8725-8744 | Msa1410880:intron | 35.0% |
| AAGGAATATGGATGTGTGTA+TGG | - | tig0023710:8844-8863 | None:intergenic | 35.0% | |
| ATACAGGATCACTCAAAGAA+TGG | - | tig0023710:9014-9033 | None:intergenic | 35.0% | |
| ATTCTTTGAGTGATCCTGTA+TGG | + | tig0023710:9013-9032 | Msa1410880:intron | 35.0% | |
| GAACACAGATTTAATTGCAG+AGG | - | tig0023710:9091-9110 | None:intergenic | 35.0% | |
| CTGCAATTAAATCTGTGTTC+GGG | + | tig0023710:9091-9110 | Msa1410880:CDS | 35.0% | |
| ! | TTGTCATATCTTGATGGTAC+AGG | + | tig0023710:9197-9216 | Msa1410880:intron | 35.0% |
| TGACAAATTGGAGAAGCTTA+GGG | + | tig0023710:9221-9240 | Msa1410880:CDS | 35.0% | |
| TGTTATTGTTACAATCCCCA+CGG | + | tig0023710:9296-9315 | Msa1410880:CDS | 35.0% | |
| !! | TTATTTCTAGGTCATACCGT+GGG | - | tig0023710:9315-9334 | None:intergenic | 35.0% |
| !! | ATTATTTCTAGGTCATACCG+TGG | - | tig0023710:9316-9335 | None:intergenic | 35.0% |
| TGAAGTCCTTAAATCAGTCT+TGG | - | tig0023710:9403-9422 | None:intergenic | 35.0% | |
| ATTTAAGGACTTCAGATTCC+TGG | + | tig0023710:9409-9428 | Msa1410880:intron | 35.0% | |
| ! | CTTTTCTCACTAGGTGAAAT+TGG | - | tig0023710:9493-9512 | None:intergenic | 35.0% |
| CAATTTCACCTAGTGAGAAA+AGG | + | tig0023710:9491-9510 | Msa1410880:intron | 35.0% | |
| AACGCTTTCTTTCTTCAATG+AGG | - | tig0023710:9675-9694 | None:intergenic | 35.0% | |
| ACAAAACTTGCAATCAGATG+CGG | - | tig0023710:9738-9757 | None:intergenic | 35.0% | |
| !! | TACTGCTAGCTAACTTTTTC+AGG | + | tig0023710:9936-9955 | Msa1410880:intron | 35.0% |
| CTTATCTCAACATCAACAAG+TGG | - | tig0023710:10030-10049 | None:intergenic | 35.0% | |
| CTTGTTGATGTTGAGATAAG+AGG | + | tig0023710:10030-10049 | Msa1410880:CDS | 35.0% | |
| ! | AATTTCTGGGTGACATTATC+TGG | + | tig0023710:10067-10086 | Msa1410880:CDS | 35.0% |
| GTGAAAACTGGCATTTCATA+TGG | - | tig0023710:10535-10554 | None:intergenic | 35.0% | |
| CGTGGACGTATTTGAATCAA+GGG | + | tig0023710:6200-6219 | Msa1410880:five_prime_UTR | 40.0% | |
| AAAAGGAAAGAGAGGAGATG+GGG | - | tig0023710:6381-6400 | None:intergenic | 40.0% | |
| GAAAAGGAAAGAGAGGAGAT+GGG | - | tig0023710:6382-6401 | None:intergenic | 40.0% | |
| TGAAAAGGAAAGAGAGGAGA+TGG | - | tig0023710:6383-6402 | None:intergenic | 40.0% | |
| GCTTTGTGAAAAGGAAAGAG+AGG | - | tig0023710:6389-6408 | None:intergenic | 40.0% | |
| AAGGAGGATGCTTTGTGAAA+AGG | - | tig0023710:6398-6417 | None:intergenic | 40.0% | |
| !!! | GTTTGGGTTTTCTTTGAGGT+AGG | + | tig0023710:6998-7017 | Msa1410880:intron | 40.0% |
| !! | TGTCAGAAAGTGCTATGCTT+TGG | + | tig0023710:7023-7042 | Msa1410880:intron | 40.0% |
| ! | TTTGTTGTCAGTGAGATCAG+TGG | + | tig0023710:7112-7131 | Msa1410880:intron | 40.0% |
| GCTCCTACAGAATCTATATC+GGG | + | tig0023710:7137-7156 | Msa1410880:CDS | 40.0% | |
| CTCCTACAGAATCTATATCG+GGG | + | tig0023710:7138-7157 | Msa1410880:CDS | 40.0% | |
| AACCCCGATATAGATTCTGT+AGG | - | tig0023710:7143-7162 | None:intergenic | 40.0% | |
| !! | GAGAGGAAGTATTACATGCT+AGG | + | tig0023710:7185-7204 | Msa1410880:CDS | 40.0% |
| !! | AGGAAGTATTACATGCTAGG+TGG | + | tig0023710:7188-7207 | Msa1410880:CDS | 40.0% |
| !! | GGAAGTATTACATGCTAGGT+GGG | + | tig0023710:7189-7208 | Msa1410880:CDS | 40.0% |
| TATTACATGCTAGGTGGGAA+AGG | + | tig0023710:7194-7213 | Msa1410880:CDS | 40.0% | |
| ! | TTTGAGCGATTCTTTTGCTC+AGG | + | tig0023710:7313-7332 | Msa1410880:CDS | 40.0% |
| ! | TCCGATGTTACTTATGAGCT+AGG | + | tig0023710:7356-7375 | Msa1410880:intron | 40.0% |
| AGAGCGAAAAGTGGATAATC+AGG | - | tig0023710:7480-7499 | None:intergenic | 40.0% | |
| CTTACTTCAAGAGCGAAAAG+TGG | - | tig0023710:7489-7508 | None:intergenic | 40.0% | |
| ! | TTTTCGCTCTTGAAGTAAGC+TGG | + | tig0023710:7490-7509 | Msa1410880:intron | 40.0% |
| GATGTAGCTAAACAAAACGG+TGG | + | tig0023710:7688-7707 | Msa1410880:CDS | 40.0% | |
| ! | AAACAAAACGGTGGAAGTAC+TGG | + | tig0023710:7697-7716 | Msa1410880:CDS | 40.0% |
| GGAGTCAAAGATTTCATGGA+TGG | + | tig0023710:7718-7737 | Msa1410880:CDS | 40.0% | |
| CAAAGATTTCATGGATGGCA+TGG | + | tig0023710:7723-7742 | Msa1410880:CDS | 40.0% | |
| TCTTGGAATGATAGTAGACC+AGG | + | tig0023710:7747-7766 | Msa1410880:CDS | 40.0% | |
| TGAAGCTATTGCGATTTCCA+AGG | + | tig0023710:8483-8502 | Msa1410880:CDS | 40.0% | |
| ACAGTTAAAACCTTCTTGCC+AGG | + | tig0023710:8572-8591 | Msa1410880:intron | 40.0% | |
| ATGACCCTGTTCAGGAAAAT+GGG | - | tig0023710:8732-8751 | None:intergenic | 40.0% | |
| TATGACCCTGTTCAGGAAAA+TGG | - | tig0023710:8733-8752 | None:intergenic | 40.0% | |
| ATTGTCCTTGCCTGATTTCT+TGG | + | tig0023710:8763-8782 | Msa1410880:CDS | 40.0% | |
| ATGGATGCATCCAAGAAATC+AGG | - | tig0023710:8776-8795 | None:intergenic | 40.0% | |
| GATTTCTTGGATGCATCCAT+CGG | + | tig0023710:8776-8795 | Msa1410880:CDS | 40.0% | |
| ATTTCTTGGATGCATCCATC+GGG | + | tig0023710:8777-8796 | Msa1410880:CDS | 40.0% | |
| ATCCATCGGGAAGATACTAA+AGG | + | tig0023710:8790-8809 | Msa1410880:CDS | 40.0% | |
| TACCTTTAGTATCTTCCCGA+TGG | - | tig0023710:8795-8814 | None:intergenic | 40.0% | |
| ATTGGTATCAACAGCCATAC+AGG | - | tig0023710:9030-9049 | None:intergenic | 40.0% | |
| CTTAGCTGCAGCAGAATAAT+TGG | - | tig0023710:9048-9067 | None:intergenic | 40.0% | |
| AATCTTACAGCATCTTGACG+AGG | - | tig0023710:9126-9145 | None:intergenic | 40.0% | |
| CTGACAAATTGGAGAAGCTT+AGG | + | tig0023710:9220-9239 | Msa1410880:CDS | 40.0% | |
| !! | TATTTCTAGGTCATACCGTG+GGG | - | tig0023710:9314-9333 | None:intergenic | 40.0% |
| TAAATCAGTCTTGGCAGTGA+TGG | - | tig0023710:9394-9413 | None:intergenic | 40.0% | |
| ! | TCACTGCCAAGACTGATTTA+AGG | + | tig0023710:9394-9413 | Msa1410880:intron | 40.0% |
| CACCCATTTGGATTTATACC+AGG | - | tig0023710:9430-9449 | None:intergenic | 40.0% | |
| CTGGTATAAATCCAAATGGG+TGG | + | tig0023710:9428-9447 | Msa1410880:intron | 40.0% | |
| ACGAACAATGACATCGTGTT+CGG | - | tig0023710:9461-9480 | None:intergenic | 40.0% | |
| !! | CAGTTGGTAAACTGCAACAA+CGG | - | tig0023710:9522-9541 | None:intergenic | 40.0% |
| TCATTAACTGCCATCACCTA+GGG | - | tig0023710:9635-9654 | None:intergenic | 40.0% | |
| TTGACAATGAGTCTCTTCAC+AGG | - | tig0023710:9698-9717 | None:intergenic | 40.0% | |
| TGTTCCTGCTCTCAAATTTC+TGG | + | tig0023710:10053-10072 | Msa1410880:CDS | 40.0% | |
| GTTCCTGCTCTCAAATTTCT+GGG | + | tig0023710:10054-10073 | Msa1410880:CDS | 40.0% | |
| ATAAGCAAAAGCCCAAGTGT+GGG | - | tig0023710:10500-10519 | None:intergenic | 40.0% | |
| AATAAGCAAAAGCCCAAGTG+TGG | - | tig0023710:10501-10520 | None:intergenic | 40.0% | |
| GAGAAGAAGCAGAAGAAGAG+TGG | - | tig0023710:6307-6326 | None:intergenic | 45.0% | |
| AGCGTGCAAAGAAACAAAGG+AGG | - | tig0023710:6414-6433 | None:intergenic | 45.0% | |
| ! | GGAAGCGTGCAAAGAAACAA+AGG | - | tig0023710:6417-6436 | None:intergenic | 45.0% |
| ! | CAACCCACCAAGTCTTTTCA+AGG | + | tig0023710:6443-6462 | Msa1410880:CDS | 45.0% |
| CCAATACAACACCCAAACAG+TGG | - | tig0023710:6872-6891 | None:intergenic | 45.0% | |
| ! | CCACTGTTTGGGTGTTGTAT+TGG | + | tig0023710:6869-6888 | Msa1410880:intron | 45.0% |
| TATATCGGGGTTTGACGACA+TGG | + | tig0023710:7151-7170 | Msa1410880:CDS | 45.0% | |
| CAAAGAATGTGCAGGATCAG+TGG | - | tig0023710:7297-7316 | None:intergenic | 45.0% | |
| GAATCGCTCAAAGAATGTGC+AGG | - | tig0023710:7305-7324 | None:intergenic | 45.0% | |
| AGATAAACCCTGAGAAGGCT+AGG | + | tig0023710:7653-7672 | Msa1410880:intron | 45.0% | |
| GATAAACCCTGAGAAGGCTA+GGG | + | tig0023710:7654-7673 | Msa1410880:intron | 45.0% | |
| ! | AATCTTCCCTAGCCTTCTCA+GGG | - | tig0023710:7663-7682 | None:intergenic | 45.0% |
| ! | AAATCTTCCCTAGCCTTCTC+AGG | - | tig0023710:7664-7683 | None:intergenic | 45.0% |
| CAACTTGCCATCATATAGGC+AGG | + | tig0023710:7899-7918 | Msa1410880:intron | 45.0% | |
| GTATGTGCCTGCCTATATGA+TGG | - | tig0023710:7909-7928 | None:intergenic | 45.0% | |
| GTGCAGCTCTGTAGCATAAA+AGG | + | tig0023710:8011-8030 | Msa1410880:intron | 45.0% | |
| TATTGAACAAACTCCGCTGC+TGG | + | tig0023710:8121-8140 | Msa1410880:intron | 45.0% | |
| GCATTCTTTCAATCCAGCAG+CGG | - | tig0023710:8137-8156 | None:intergenic | 45.0% | |
| AATAGCTTAAGGTGTGCTGC+CGG | - | tig0023710:8283-8302 | None:intergenic | 45.0% | |
| GAAACAACGCGTCTTAGAGA+AGG | - | tig0023710:8392-8411 | None:intergenic | 45.0% | |
| GCTAAAACTGGGAGAGTTAC+TGG | + | tig0023710:8438-8457 | Msa1410880:CDS | 45.0% | |
| CGTAATGTATGACCCTGTTC+AGG | - | tig0023710:8740-8759 | None:intergenic | 45.0% | |
| TGCATCCAAGAAATCAGGCA+AGG | - | tig0023710:8771-8790 | None:intergenic | 45.0% | |
| GATGGTACAGGCTGACAAAT+TGG | + | tig0023710:9209-9228 | Msa1410880:intron | 45.0% | |
| AATTGGAGAAGCTTAGGGAG+AGG | + | tig0023710:9226-9245 | Msa1410880:CDS | 45.0% | |
| TCGGTGAAAAACCACCCATT+TGG | - | tig0023710:9442-9461 | None:intergenic | 45.0% | |
| ! | CGGAAAAGCCTTTTCTCACT+AGG | - | tig0023710:9502-9521 | None:intergenic | 45.0% |
| GTCTTTATTCCCCTAGGTGA+TGG | + | tig0023710:9622-9641 | Msa1410880:intron | 45.0% | |
| CATTAACTGCCATCACCTAG+GGG | - | tig0023710:9634-9653 | None:intergenic | 45.0% | |
| CTCATTAACTGCCATCACCT+AGG | - | tig0023710:9636-9655 | None:intergenic | 45.0% | |
| ! | CTTCAATGAGGCACTCAATC+TGG | - | tig0023710:9663-9682 | None:intergenic | 45.0% |
| AACTTGCAATCAGATGCGGA+TGG | - | tig0023710:9734-9753 | None:intergenic | 45.0% | |
| ATCGATAAGCTGGAGAGTTC+TGG | - | tig0023710:9997-10016 | None:intergenic | 45.0% | |
| TGCTTGGATCATCGATAAGC+TGG | - | tig0023710:10007-10026 | None:intergenic | 45.0% | |
| CAACATCAACAAGTGGTGCT+TGG | - | tig0023710:10023-10042 | None:intergenic | 45.0% | |
| TCACCCAGAAATTTGAGAGC+AGG | - | tig0023710:10060-10079 | None:intergenic | 45.0% | |
| ! | AACCCATAACAAGAGCACAC+AGG | + | tig0023710:10316-10335 | Msa1410880:three_prime_UTR | 45.0% |
| ! | GTCCTGTGTGCTCTTGTTAT+GGG | - | tig0023710:10321-10340 | None:intergenic | 45.0% |
| TGTCCTGTGTGCTCTTGTTA+TGG | - | tig0023710:10322-10341 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTTTAAATTAAA+TGG | + | tig0023710:6696-6715 | Msa1410880:intron | 5.0% |
| !! | AGACTTGGTGGGTTGCTTAG+TGG | - | tig0023710:6438-6457 | None:intergenic | 50.0% |
| ! | TGGATGATCGATGATGGCAC+TGG | + | tig0023710:6796-6815 | Msa1410880:intron | 50.0% |
| GGTTTGACGACATGGTTGCT+GGG | + | tig0023710:7159-7178 | Msa1410880:CDS | 50.0% | |
| TACATGCTAGGTGGGAAAGG+AGG | + | tig0023710:7197-7216 | Msa1410880:CDS | 50.0% | |
| ACATGCTAGGTGGGAAAGGA+GGG | + | tig0023710:7198-7217 | Msa1410880:CDS | 50.0% | |
| ! | TAATGGACACCCTACTCTCG+TGG | + | tig0023710:7268-7287 | Msa1410880:CDS | 50.0% |
| CAGTGGAAACCACGAGAGTA+GGG | - | tig0023710:7280-7299 | None:intergenic | 50.0% | |
| TCAGTGGAAACCACGAGAGT+AGG | - | tig0023710:7281-7300 | None:intergenic | 50.0% | |
| TTCATGGATGGCATGGGTCT+TGG | + | tig0023710:7730-7749 | Msa1410880:CDS | 50.0% | |
| TTACTGGATACACCTCCTCC+TGG | + | tig0023710:8454-8473 | Msa1410880:CDS | 50.0% | |
| ATAGCTTCATCCAGTCCAGG+AGG | - | tig0023710:8472-8491 | None:intergenic | 50.0% | |
| GCAATAGCTTCATCCAGTCC+AGG | - | tig0023710:8475-8494 | None:intergenic | 50.0% | |
| TTGCAATCAGATGCGGATGG+TGG | - | tig0023710:9731-9750 | None:intergenic | 50.0% | |
| TTCCACATGCTTGAGCTGAG+TGG | + | tig0023710:9800-9819 | Msa1410880:intron | 50.0% | |
| ! | CAAGAGCACACAGGACATGA+AGG | + | tig0023710:10325-10344 | Msa1410880:three_prime_UTR | 50.0% |
| TACAGTCAAGTGGTAGCTGC+TGG | + | tig0023710:10361-10380 | Msa1410880:three_prime_UTR | 50.0% | |
| TCAGCTCTCATTCCCACACT+TGG | + | tig0023710:10485-10504 | Msa1410880:three_prime_UTR | 50.0% | |
| CAGCTCTCATTCCCACACTT+GGG | + | tig0023710:10486-10505 | Msa1410880:three_prime_UTR | 50.0% | |
| !! | GAAGGAGAGAGCACCCTTGA+TGG | - | tig0023710:6351-6370 | None:intergenic | 55.0% |
| GGAAAGAGAGGAGATGGGGT+GGG | - | tig0023710:6377-6396 | None:intergenic | 55.0% | |
| AGGAAAGAGAGGAGATGGGG+TGG | - | tig0023710:6378-6397 | None:intergenic | 55.0% | |
| GGGTTTGACGACATGGTTGC+TGG | + | tig0023710:7158-7177 | Msa1410880:CDS | 55.0% | |
| ACATGGTTGCTGGGACTGAG+AGG | + | tig0023710:7168-7187 | Msa1410880:CDS | 55.0% | |
| CATGCTAGGTGGGAAAGGAG+GGG | + | tig0023710:7199-7218 | Msa1410880:CDS | 55.0% | |
| TAGGTGGGAAAGGAGGGGTA+GGG | + | tig0023710:7204-7223 | Msa1410880:CDS | 55.0% | |
| ! | GGATTTGACAGGGGGAGCAT+TGG | + | tig0023710:7440-7459 | Msa1410880:intron | 55.0% |
| !! | GGAGCATTGGTACAGGTGGA+TGG | + | tig0023710:7453-7472 | Msa1410880:CDS | 55.0% |
| CACCACTCAGCTCAAGCATG+TGG | - | tig0023710:9805-9824 | None:intergenic | 55.0% | |
| AGTCAAGTGGTAGCTGCTGG+AGG | + | tig0023710:10364-10383 | Msa1410880:three_prime_UTR | 55.0% | |
| AGGAGATGGGGTGGGATGGA+AGG | - | tig0023710:6369-6388 | None:intergenic | 60.0% | |
| AGAGAGGAGATGGGGTGGGA+TGG | - | tig0023710:6373-6392 | None:intergenic | 60.0% | |
| CTAGGTGGGAAAGGAGGGGT+AGG | + | tig0023710:7203-7222 | Msa1410880:CDS | 60.0% | |
| !! | GACAGGGGGAGCATTGGTAC+AGG | + | tig0023710:7446-7465 | Msa1410880:CDS | 60.0% |
| !! | AGGGGGAGCATTGGTACAGG+TGG | + | tig0023710:7449-7468 | Msa1410880:CDS | 60.0% |
| AGCTTAAGGTGTGCTGCCGG+TGG | - | tig0023710:8280-8299 | None:intergenic | 60.0% | |
| GGATACACCTCCTCCTGGAC+TGG | + | tig0023710:8459-8478 | Msa1410880:CDS | 60.0% | |
| GCTTCATCCAGTCCAGGAGG+AGG | - | tig0023710:8469-8488 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023710 | gene | 6200 | 10591 | 6200 | ID=Msa1410880;Name=Msa1410880 |
| tig0023710 | mRNA | 6200 | 10591 | 6200 | ID=Msa1410880-mRNA-1;Parent=Msa1410880;Name=Msa1410880-mRNA-1;_AED=0.16;_eAED=0.16;_QI=90|1|1|1|0.90|0.83|12|306|406 |
| tig0023710 | exon | 6200 | 6464 | 6200 | ID=Msa1410880-mRNA-1:exon:26796;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 7123 | 7334 | 7123 | ID=Msa1410880-mRNA-1:exon:26797;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 7441 | 7503 | 7441 | ID=Msa1410880-mRNA-1:exon:26798;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 7655 | 7768 | 7655 | ID=Msa1410880-mRNA-1:exon:26799;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 8430 | 8504 | 8430 | ID=Msa1410880-mRNA-1:exon:26800;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 8594 | 8662 | 8594 | ID=Msa1410880-mRNA-1:exon:26801;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 8746 | 8811 | 8746 | ID=Msa1410880-mRNA-1:exon:26802;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 9063 | 9137 | 9063 | ID=Msa1410880-mRNA-1:exon:26803;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 9219 | 9317 | 9219 | ID=Msa1410880-mRNA-1:exon:26804;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 9638 | 9772 | 9638 | ID=Msa1410880-mRNA-1:exon:26805;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 9958 | 10115 | 9958 | ID=Msa1410880-mRNA-1:exon:26806;Parent=Msa1410880-mRNA-1 |
| tig0023710 | exon | 10306 | 10591 | 10306 | ID=Msa1410880-mRNA-1:exon:26807;Parent=Msa1410880-mRNA-1 |
| tig0023710 | five_prime_UTR | 6200 | 6289 | 6200 | ID=Msa1410880-mRNA-1:five_prime_utr;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 6290 | 6464 | 6290 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 7123 | 7334 | 7123 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 7441 | 7503 | 7441 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 7655 | 7768 | 7655 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 8430 | 8504 | 8430 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 8594 | 8662 | 8594 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 8746 | 8811 | 8746 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 9063 | 9137 | 9063 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 9219 | 9317 | 9219 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 9638 | 9772 | 9638 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | CDS | 9958 | 10095 | 9958 | ID=Msa1410880-mRNA-1:cds;Parent=Msa1410880-mRNA-1 |
| tig0023710 | three_prime_UTR | 10096 | 10115 | 10096 | ID=Msa1410880-mRNA-1:three_prime_utr;Parent=Msa1410880-mRNA-1 |
| tig0023710 | three_prime_UTR | 10306 | 10591 | 10306 | ID=Msa1410880-mRNA-1:three_prime_utr;Parent=Msa1410880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
