AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493430 MtrunA17_Chr3g0086951 95.876 194 3 1 1 194 1 189 5.16e-128 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493430 AT5G08050.1 63.190 163 45 2 31 192 8 156 3.34e-51 162

Find 45 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTGATTTCTCTCTTA+TGG 0.205748 3_4:+18450996 Msa0493430:exon
TGTTGTCGAGGTTGGTTTAC+AGG 0.237635 3_4:+18450890 Msa0493430:CDS
GTAGACGTTACAGCACTTCT+AGG 0.268219 3_4:-18450609 None:intergenic
TAAAACTGTAGCTTCTAAAA+AGG 0.328807 3_4:+18449435 Msa0493430:CDS
GAGACAGAAGGAACTGGTTT+GGG 0.333662 3_4:-18449412 None:intergenic
TGTGTTGTTGGTGGTTCTGC+TGG 0.362863 3_4:+18450930 Msa0493430:CDS
AGAGACAGAAGGAACTGGTT+TGG 0.399810 3_4:-18449413 None:intergenic
CATTCTTGTGAGGAGTTTAA+CGG 0.401167 3_4:-18450637 None:intergenic
TAGCGATAATCCTGCTTTCT+CGG 0.404741 3_4:-18450712 None:intergenic
GTTGCTTTGATCTGTGTTGT+TGG 0.414772 3_4:+18450918 Msa0493430:CDS
ACCTCGACAACATTATCTTC+TGG 0.418827 3_4:-18450879 None:intergenic
TAAACCTGCTTTCTCTGCCT+TGG 0.422974 3_4:-18450679 None:intergenic
CGTTAAACTCCTCACAAGAA+TGG 0.466698 3_4:+18450638 Msa0493430:CDS
GCCATGGATTTGACCAGAAA+AGG 0.471154 3_4:-18449385 None:intergenic
AAGAGTGATCCTGGAGTTGA+TGG 0.471176 3_4:-18450804 None:intergenic
GAAGATAATGTTGTCGAGGT+TGG 0.479127 3_4:+18450882 Msa0493430:CDS
CGAGGTTGGTTTACAGGCTG+TGG 0.483091 3_4:+18450896 Msa0493430:CDS
GATCAAGCTGTTACTACAGA+TGG 0.487910 3_4:-18449320 None:intergenic
CTTATTGTATTATGATGTGA+AGG 0.491912 3_4:+18451042 Msa0493430:three_prime_UTR
CTATCAACAATAGAGAAACT+TGG 0.493062 3_4:+18450732 Msa0493430:CDS
CTGAGTGTGAAGAGTGATCC+TGG 0.494258 3_4:-18450813 None:intergenic
GCAGAATAGAGACCATTGAT+TGG 0.496954 3_4:-18449159 None:intergenic
AACAATGGAAAACCAATCAA+TGG 0.503986 3_4:+18449147 Msa0493430:five_prime_UTR
AACTGGTTTGGGAGTAGCCA+TGG 0.510271 3_4:-18449401 None:intergenic
TTCTAGGTTGTTCCCCAAGT+GGG 0.513232 3_4:-18450593 None:intergenic
TTATCAGCCGCCGAGAAAGC+AGG 0.520670 3_4:+18450702 Msa0493430:CDS
CTCTCAAAAGCTGAAGAACT+CGG 0.527504 3_4:+18450759 Msa0493430:CDS
GCTTTGATCTGTGTTGTTGG+TGG 0.528999 3_4:+18450921 Msa0493430:CDS
TATAATGATGATGACAATGA+AGG 0.531212 3_4:+18449288 Msa0493430:exon
CTTTAAAATAAAAGCAACAA+TGG 0.531423 3_4:+18449132 None:intergenic
AATTCAACTGTATTCCCACT+TGG 0.537612 3_4:+18450579 Msa0493430:CDS
TTAACCAAGGCAGAGAAAGC+AGG 0.541705 3_4:+18450675 Msa0493430:CDS
GCTACTGATCCATCAACTCC+AGG 0.551246 3_4:+18450795 Msa0493430:CDS
ATTCAACTGTATTCCCACTT+GGG 0.553323 3_4:+18450580 Msa0493430:CDS
TCAGTTGCTCCATTCTTGTG+AGG 0.565544 3_4:-18450647 None:intergenic
TCCAGAAGATAATGTTGTCG+AGG 0.595963 3_4:+18450878 Msa0493430:CDS
TTCAACTGTATTCCCACTTG+GGG 0.603934 3_4:+18450581 Msa0493430:CDS
TTATTGTATTATGATGTGAA+GGG 0.605343 3_4:+18451043 Msa0493430:three_prime_UTR
GGAACAAGATAAACAAACAA+AGG 0.614999 3_4:-18450858 None:intergenic
GATAGTGATAATTGATGATG+AGG 0.623606 3_4:-18449181 None:intergenic
TCATAATCAATGATAATGAG+TGG 0.625753 3_4:-18449203 None:intergenic
CTTCTAGGTTGTTCCCCAAG+TGG 0.631009 3_4:-18450594 None:intergenic
ATAATACAATAAGATAACAA+AGG 0.670551 3_4:-18451032 None:intergenic
CGATAATCCTGCTTTCTCGG+CGG 0.695629 3_4:-18450709 None:intergenic
GCAACTGAGACTGTTAACCA+AGG 0.730927 3_4:+18450662 Msa0493430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAATAAGATAACAA+AGG - chr3_4:18451035-18451054 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG + chr3_4:18451104-18451123 Msa0493430:three_prime_UTR 15.0%
!! ATAATACAATAAGATAACAA+AGG - chr3_4:18451035-18451054 None:intergenic 15.0%
!!! ATGATTCAAAGTTTTATATA+TGG + chr3_4:18451104-18451123 Msa0493430:three_prime_UTR 15.0%
!! CAATAACAAGCAATAATATA+TGG - chr3_4:18449478-18449497 None:intergenic 20.0%
!! TTATGTAATATTATACTGTG+TGG + chr3_4:18449536-18449555 Msa0493430:intron 20.0%
!! AAATTTAACAATATGTGAAC+AGG + chr3_4:18449650-18449669 Msa0493430:intron 20.0%
!! TATTGAAAAAGTAAATAACC+AGG - chr3_4:18449974-18449993 None:intergenic 20.0%
!! AAAATTTCTATGTAGGTTAA+TGG - chr3_4:18450003-18450022 None:intergenic 20.0%
!! ACAAAGTAAAATTTCTATGT+AGG - chr3_4:18450010-18450029 None:intergenic 20.0%
!!! ACATAGAAATTTTACTTTGT+CGG + chr3_4:18450010-18450029 Msa0493430:intron 20.0%
!!! ATTTAAATTTTATGACAGAC+CGG + chr3_4:18450121-18450140 Msa0493430:intron 20.0%
!!! ACTATGTAAATCATGTTTTT+TGG + chr3_4:18450176-18450195 Msa0493430:intron 20.0%
!!! CTATGTAAATCATGTTTTTT+GGG + chr3_4:18450177-18450196 Msa0493430:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_4:18450979-18450998 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_4:18450996-18451015 Msa0493430:exon 20.0%
!! TTATTGTATTATGATGTGAA+GGG + chr3_4:18451043-18451062 Msa0493430:three_prime_UTR 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_4:18451110-18451129 Msa0493430:three_prime_UTR 20.0%
!! CAATAACAAGCAATAATATA+TGG - chr3_4:18449478-18449497 None:intergenic 20.0%
!! TTATGTAATATTATACTGTG+TGG + chr3_4:18449536-18449555 Msa0493430:intron 20.0%
!! AAATTTAACAATATGTGAAC+AGG + chr3_4:18449650-18449669 Msa0493430:intron 20.0%
!! TATTGAAAAAGTAAATAACC+AGG - chr3_4:18449974-18449993 None:intergenic 20.0%
!! AAAATTTCTATGTAGGTTAA+TGG - chr3_4:18450003-18450022 None:intergenic 20.0%
!! ACAAAGTAAAATTTCTATGT+AGG - chr3_4:18450010-18450029 None:intergenic 20.0%
!!! ACATAGAAATTTTACTTTGT+CGG + chr3_4:18450010-18450029 Msa0493430:intron 20.0%
!!! ATTTAAATTTTATGACAGAC+CGG + chr3_4:18450121-18450140 Msa0493430:intron 20.0%
!!! ACTATGTAAATCATGTTTTT+TGG + chr3_4:18450176-18450195 Msa0493430:intron 20.0%
!!! CTATGTAAATCATGTTTTTT+GGG + chr3_4:18450177-18450196 Msa0493430:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_4:18450979-18450998 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_4:18450996-18451015 Msa0493430:exon 20.0%
!! TTATTGTATTATGATGTGAA+GGG + chr3_4:18451043-18451062 Msa0493430:three_prime_UTR 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_4:18451110-18451129 Msa0493430:three_prime_UTR 20.0%
!! TCATAATCAATGATAATGAG+TGG - chr3_4:18449206-18449225 None:intergenic 25.0%
!! TTTCTCTTTTTCTTATCACT+TGG - chr3_4:18449250-18449269 None:intergenic 25.0%
!! TATAATGATGATGACAATGA+AGG + chr3_4:18449288-18449307 Msa0493430:exon 25.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_4:18449435-18449454 Msa0493430:CDS 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_4:18449586-18449605 Msa0493430:intron 25.0%
! ATCCTTTCTCATAATTAAAG+TGG - chr3_4:18449591-18449610 None:intergenic 25.0%
!!! TCATCAAAAAGCATTAAAAC+TGG - chr3_4:18449684-18449703 None:intergenic 25.0%
!!! TGCTTTTTGATGATATGATA+TGG + chr3_4:18449691-18449710 Msa0493430:intron 25.0%
! TAGAAATGCTTTGTCTAAAT+AGG - chr3_4:18450148-18450167 None:intergenic 25.0%
! ACTAGTTCGAAAAAACATAT+TGG + chr3_4:18450328-18450347 Msa0493430:intron 25.0%
! TCTTGAAATTAAACTACCAT+AGG - chr3_4:18450437-18450456 None:intergenic 25.0%
!!! TTTCTACGATAATTTTCAAG+TGG + chr3_4:18450479-18450498 Msa0493430:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_4:18450834-18450853 Msa0493430:CDS 25.0%
! CTTATTGTATTATGATGTGA+AGG + chr3_4:18451042-18451061 Msa0493430:three_prime_UTR 25.0%
!! TCATAATCAATGATAATGAG+TGG - chr3_4:18449206-18449225 None:intergenic 25.0%
!! TTTCTCTTTTTCTTATCACT+TGG - chr3_4:18449250-18449269 None:intergenic 25.0%
!! TATAATGATGATGACAATGA+AGG + chr3_4:18449288-18449307 Msa0493430:exon 25.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_4:18449435-18449454 Msa0493430:CDS 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_4:18449586-18449605 Msa0493430:intron 25.0%
! ATCCTTTCTCATAATTAAAG+TGG - chr3_4:18449591-18449610 None:intergenic 25.0%
!!! TCATCAAAAAGCATTAAAAC+TGG - chr3_4:18449684-18449703 None:intergenic 25.0%
!!! TGCTTTTTGATGATATGATA+TGG + chr3_4:18449691-18449710 Msa0493430:intron 25.0%
! TAGAAATGCTTTGTCTAAAT+AGG - chr3_4:18450148-18450167 None:intergenic 25.0%
! ACTAGTTCGAAAAAACATAT+TGG + chr3_4:18450328-18450347 Msa0493430:intron 25.0%
! TCTTGAAATTAAACTACCAT+AGG - chr3_4:18450437-18450456 None:intergenic 25.0%
!!! TTTCTACGATAATTTTCAAG+TGG + chr3_4:18450479-18450498 Msa0493430:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_4:18450834-18450853 Msa0493430:CDS 25.0%
! CTTATTGTATTATGATGTGA+AGG + chr3_4:18451042-18451061 Msa0493430:three_prime_UTR 25.0%
AACAATGGAAAACCAATCAA+TGG + chr3_4:18449147-18449166 Msa0493430:five_prime_UTR 30.0%
!! GATAGTGATAATTGATGATG+AGG - chr3_4:18449184-18449203 None:intergenic 30.0%
AATATTATACTGTGTGGAAC+TGG + chr3_4:18449542-18449561 Msa0493430:intron 30.0%
AAAACTCCCATGACAAATTA+CGG - chr3_4:18449733-18449752 None:intergenic 30.0%
TATACTGTCAAAAAATCACC+TGG + chr3_4:18449953-18449972 Msa0493430:intron 30.0%
!!! ACGCCATTTTTAGTACTATT+CGG - chr3_4:18450075-18450094 None:intergenic 30.0%
AATAGTACTAAAAATGGCGT+AGG + chr3_4:18450075-18450094 Msa0493430:intron 30.0%
!!! TGTTTTTTGGGCAAATTCTA+CGG + chr3_4:18450189-18450208 Msa0493430:intron 30.0%
TAACTTGAAACTACTACTCA+TGG + chr3_4:18450240-18450259 Msa0493430:intron 30.0%
! AAACGAATATGAGTTGAGTT+TGG - chr3_4:18450370-18450389 None:intergenic 30.0%
! AACTCATATTCGTTTTCCTT+TGG + chr3_4:18450375-18450394 Msa0493430:intron 30.0%
! ATATTCGTTTTCCTTTGGTT+TGG + chr3_4:18450380-18450399 Msa0493430:intron 30.0%
TTAAACTACCATAGGTGAAA+CGG - chr3_4:18450429-18450448 None:intergenic 30.0%
! TTTAATTTCAAGAGCGACAT+CGG + chr3_4:18450444-18450463 Msa0493430:intron 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_4:18450732-18450751 Msa0493430:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_4:18450861-18450880 None:intergenic 30.0%
AACAATGGAAAACCAATCAA+TGG + chr3_4:18449147-18449166 Msa0493430:five_prime_UTR 30.0%
!! GATAGTGATAATTGATGATG+AGG - chr3_4:18449184-18449203 None:intergenic 30.0%
AATATTATACTGTGTGGAAC+TGG + chr3_4:18449542-18449561 Msa0493430:intron 30.0%
AAAACTCCCATGACAAATTA+CGG - chr3_4:18449733-18449752 None:intergenic 30.0%
TATACTGTCAAAAAATCACC+TGG + chr3_4:18449953-18449972 Msa0493430:intron 30.0%
!!! ACGCCATTTTTAGTACTATT+CGG - chr3_4:18450075-18450094 None:intergenic 30.0%
AATAGTACTAAAAATGGCGT+AGG + chr3_4:18450075-18450094 Msa0493430:intron 30.0%
!!! TGTTTTTTGGGCAAATTCTA+CGG + chr3_4:18450189-18450208 Msa0493430:intron 30.0%
TAACTTGAAACTACTACTCA+TGG + chr3_4:18450240-18450259 Msa0493430:intron 30.0%
! AAACGAATATGAGTTGAGTT+TGG - chr3_4:18450370-18450389 None:intergenic 30.0%
! AACTCATATTCGTTTTCCTT+TGG + chr3_4:18450375-18450394 Msa0493430:intron 30.0%
! ATATTCGTTTTCCTTTGGTT+TGG + chr3_4:18450380-18450399 Msa0493430:intron 30.0%
TTAAACTACCATAGGTGAAA+CGG - chr3_4:18450429-18450448 None:intergenic 30.0%
! TTTAATTTCAAGAGCGACAT+CGG + chr3_4:18450444-18450463 Msa0493430:intron 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_4:18450732-18450751 Msa0493430:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_4:18450861-18450880 None:intergenic 30.0%
TAACAATATGTGAACAGGAG+TGG + chr3_4:18449655-18449674 Msa0493430:intron 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_4:18449697-18449716 Msa0493430:intron 35.0%
ATTACGGCTTATGTATACCT+AGG - chr3_4:18449717-18449736 None:intergenic 35.0%
! ACATAAGCCGTAATTTGTCA+TGG + chr3_4:18449723-18449742 Msa0493430:intron 35.0%
! CATAAGCCGTAATTTGTCAT+GGG + chr3_4:18449724-18449743 Msa0493430:intron 35.0%
TCCAGTAAGTACAACTCATA+TGG + chr3_4:18449796-18449815 Msa0493430:intron 35.0%
ACCATATGAGTTGTACTTAC+TGG - chr3_4:18449800-18449819 None:intergenic 35.0%
AAGCAAATCAAATGTCTCCT+CGG - chr3_4:18449829-18449848 None:intergenic 35.0%
!! ACATTTGATTTGCTTAGACG+CGG + chr3_4:18449834-18449853 Msa0493430:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_4:18449876-18449895 None:intergenic 35.0%
! CTGGACTCTTTAGGAAAAAA+AGG + chr3_4:18449927-18449946 Msa0493430:intron 35.0%
!! ACTTTGTCGGACTTTTAAGT+AGG + chr3_4:18450023-18450042 Msa0493430:intron 35.0%
TTTAAGTAGGTGAATACGTC+AGG + chr3_4:18450036-18450055 Msa0493430:intron 35.0%
! TACTATTCGGACCTTTTCAA+AGG - chr3_4:18450062-18450081 None:intergenic 35.0%
GGTCCGAATAGTACTAAAAA+TGG + chr3_4:18450069-18450088 Msa0493430:intron 35.0%
ATGCTTTGTCTAAATAGGTC+CGG - chr3_4:18450143-18450162 None:intergenic 35.0%
GTCTCACTCATTAAACAAAG+AGG - chr3_4:18450293-18450312 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_4:18450579-18450598 Msa0493430:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_4:18450580-18450599 Msa0493430:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_4:18450640-18450659 None:intergenic 35.0%
TAACAATATGTGAACAGGAG+TGG + chr3_4:18449655-18449674 Msa0493430:intron 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_4:18449697-18449716 Msa0493430:intron 35.0%
ATTACGGCTTATGTATACCT+AGG - chr3_4:18449717-18449736 None:intergenic 35.0%
! ACATAAGCCGTAATTTGTCA+TGG + chr3_4:18449723-18449742 Msa0493430:intron 35.0%
! CATAAGCCGTAATTTGTCAT+GGG + chr3_4:18449724-18449743 Msa0493430:intron 35.0%
TCCAGTAAGTACAACTCATA+TGG + chr3_4:18449796-18449815 Msa0493430:intron 35.0%
ACCATATGAGTTGTACTTAC+TGG - chr3_4:18449800-18449819 None:intergenic 35.0%
AAGCAAATCAAATGTCTCCT+CGG - chr3_4:18449829-18449848 None:intergenic 35.0%
!! ACATTTGATTTGCTTAGACG+CGG + chr3_4:18449834-18449853 Msa0493430:intron 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_4:18449876-18449895 None:intergenic 35.0%
! CTGGACTCTTTAGGAAAAAA+AGG + chr3_4:18449927-18449946 Msa0493430:intron 35.0%
!! ACTTTGTCGGACTTTTAAGT+AGG + chr3_4:18450023-18450042 Msa0493430:intron 35.0%
TTTAAGTAGGTGAATACGTC+AGG + chr3_4:18450036-18450055 Msa0493430:intron 35.0%
! TACTATTCGGACCTTTTCAA+AGG - chr3_4:18450062-18450081 None:intergenic 35.0%
GGTCCGAATAGTACTAAAAA+TGG + chr3_4:18450069-18450088 Msa0493430:intron 35.0%
ATGCTTTGTCTAAATAGGTC+CGG - chr3_4:18450143-18450162 None:intergenic 35.0%
GTCTCACTCATTAAACAAAG+AGG - chr3_4:18450293-18450312 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_4:18450579-18450598 Msa0493430:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_4:18450580-18450599 Msa0493430:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_4:18450640-18450659 None:intergenic 35.0%
GCAGAATAGAGACCATTGAT+TGG - chr3_4:18449162-18449181 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_4:18449323-18449342 None:intergenic 40.0%
!! TGAGAGTTTTGTGTTGAAGG+AGG - chr3_4:18449355-18449374 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_4:18449358-18449377 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG + chr3_4:18449372-18449391 Msa0493430:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG + chr3_4:18449384-18449403 Msa0493430:CDS 40.0%
!!! GTTTTAGAGACAGAAGGAAC+TGG - chr3_4:18449421-18449440 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+AGG - chr3_4:18449427-18449446 None:intergenic 40.0%
ACTCATATGGTAAAAGACCG+AGG + chr3_4:18449809-18449828 Msa0493430:intron 40.0%
!! CATTTGATTTGCTTAGACGC+GGG + chr3_4:18449835-18449854 Msa0493430:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_4:18449870-18449889 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_4:18449877-18449896 None:intergenic 40.0%
!!! GTGAGTTTTATTGTACTCGC+TGG + chr3_4:18449908-18449927 Msa0493430:intron 40.0%
! AATACGTCAGGCCTTTGAAA+AGG + chr3_4:18450048-18450067 Msa0493430:intron 40.0%
!! TTTTTGGGCAAATTCTACGG+TGG + chr3_4:18450192-18450211 Msa0493430:intron 40.0%
CTACTACTCATGGTACTTGT+CGG + chr3_4:18450250-18450269 Msa0493430:intron 40.0%
TGTGTGTTCTACCAAACCAA+AGG - chr3_4:18450394-18450413 None:intergenic 40.0%
CAAGTGGTCTATCATAGAAC+CGG + chr3_4:18450495-18450514 Msa0493430:intron 40.0%
AACCTCTCTCTCCAAAAAAC+AGG - chr3_4:18450521-18450540 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_4:18450581-18450600 Msa0493430:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_4:18450638-18450657 Msa0493430:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_4:18450715-18450734 None:intergenic 40.0%
CTCTCAAAAGCTGAAGAACT+CGG + chr3_4:18450759-18450778 Msa0493430:CDS 40.0%
TCCAGAAGATAATGTTGTCG+AGG + chr3_4:18450878-18450897 Msa0493430:CDS 40.0%
ACCTCGACAACATTATCTTC+TGG - chr3_4:18450882-18450901 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG + chr3_4:18450882-18450901 Msa0493430:CDS 40.0%
! GTTGCTTTGATCTGTGTTGT+TGG + chr3_4:18450918-18450937 Msa0493430:CDS 40.0%
GCAGAATAGAGACCATTGAT+TGG - chr3_4:18449162-18449181 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_4:18449323-18449342 None:intergenic 40.0%
!! TGAGAGTTTTGTGTTGAAGG+AGG - chr3_4:18449355-18449374 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_4:18449358-18449377 None:intergenic 40.0%
! TCACACTTTCTCACCTTTTC+TGG + chr3_4:18449372-18449391 Msa0493430:CDS 40.0%
!! ACCTTTTCTGGTCAAATCCA+TGG + chr3_4:18449384-18449403 Msa0493430:CDS 40.0%
!!! GTTTTAGAGACAGAAGGAAC+TGG - chr3_4:18449421-18449440 None:intergenic 40.0%
!!! GCTACAGTTTTAGAGACAGA+AGG - chr3_4:18449427-18449446 None:intergenic 40.0%
ACTCATATGGTAAAAGACCG+AGG + chr3_4:18449809-18449828 Msa0493430:intron 40.0%
!! CATTTGATTTGCTTAGACGC+GGG + chr3_4:18449835-18449854 Msa0493430:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_4:18449870-18449889 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_4:18449877-18449896 None:intergenic 40.0%
!!! GTGAGTTTTATTGTACTCGC+TGG + chr3_4:18449908-18449927 Msa0493430:intron 40.0%
! AATACGTCAGGCCTTTGAAA+AGG + chr3_4:18450048-18450067 Msa0493430:intron 40.0%
!! TTTTTGGGCAAATTCTACGG+TGG + chr3_4:18450192-18450211 Msa0493430:intron 40.0%
CTACTACTCATGGTACTTGT+CGG + chr3_4:18450250-18450269 Msa0493430:intron 40.0%
TGTGTGTTCTACCAAACCAA+AGG - chr3_4:18450394-18450413 None:intergenic 40.0%
CAAGTGGTCTATCATAGAAC+CGG + chr3_4:18450495-18450514 Msa0493430:intron 40.0%
AACCTCTCTCTCCAAAAAAC+AGG - chr3_4:18450521-18450540 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_4:18450581-18450600 Msa0493430:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_4:18450638-18450657 Msa0493430:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_4:18450715-18450734 None:intergenic 40.0%
CTCTCAAAAGCTGAAGAACT+CGG + chr3_4:18450759-18450778 Msa0493430:CDS 40.0%
TCCAGAAGATAATGTTGTCG+AGG + chr3_4:18450878-18450897 Msa0493430:CDS 40.0%
ACCTCGACAACATTATCTTC+TGG - chr3_4:18450882-18450901 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG + chr3_4:18450882-18450901 Msa0493430:CDS 40.0%
! GTTGCTTTGATCTGTGTTGT+TGG + chr3_4:18450918-18450937 Msa0493430:CDS 40.0%
GCCATGGATTTGACCAGAAA+AGG - chr3_4:18449388-18449407 None:intergenic 45.0%
! GAGACAGAAGGAACTGGTTT+GGG - chr3_4:18449415-18449434 None:intergenic 45.0%
AGAGACAGAAGGAACTGGTT+TGG - chr3_4:18449416-18449435 None:intergenic 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_4:18449869-18449888 None:intergenic 45.0%
TTGTACTCGCTGGACTCTTT+AGG + chr3_4:18449918-18449937 Msa0493430:intron 45.0%
TCTCAAGTGTTTGTCCACCA+TGG - chr3_4:18450219-18450238 None:intergenic 45.0%
!! GAGTGAGACACTGACTTGAT+TGG + chr3_4:18450304-18450323 Msa0493430:intron 45.0%
AGGTGAAACGGTGACTTGAT+TGG - chr3_4:18450417-18450436 None:intergenic 45.0%
TCAAGTCACCGTTTCACCTA+TGG + chr3_4:18450418-18450437 Msa0493430:intron 45.0%
!!! CATAGAACCGGCCTGTTTTT+TGG + chr3_4:18450507-18450526 Msa0493430:intron 45.0%
TCTCTCTCCAAAAAACAGGC+CGG - chr3_4:18450517-18450536 None:intergenic 45.0%
TTCTAGGTTGTTCCCCAAGT+GGG - chr3_4:18450596-18450615 None:intergenic 45.0%
GTAGACGTTACAGCACTTCT+AGG - chr3_4:18450612-18450631 None:intergenic 45.0%
TCAGTTGCTCCATTCTTGTG+AGG - chr3_4:18450650-18450669 None:intergenic 45.0%
GCAACTGAGACTGTTAACCA+AGG + chr3_4:18450662-18450681 Msa0493430:CDS 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_4:18450675-18450694 Msa0493430:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_4:18450682-18450701 None:intergenic 45.0%
! CGAGTTCTTCAGCTTTTGAG+AGG - chr3_4:18450761-18450780 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_4:18450807-18450826 None:intergenic 45.0%
!! TGTTGTCGAGGTTGGTTTAC+AGG + chr3_4:18450890-18450909 Msa0493430:CDS 45.0%
! GCTTTGATCTGTGTTGTTGG+TGG + chr3_4:18450921-18450940 Msa0493430:CDS 45.0%
GCCATGGATTTGACCAGAAA+AGG - chr3_4:18449388-18449407 None:intergenic 45.0%
! GAGACAGAAGGAACTGGTTT+GGG - chr3_4:18449415-18449434 None:intergenic 45.0%
AGAGACAGAAGGAACTGGTT+TGG - chr3_4:18449416-18449435 None:intergenic 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_4:18449869-18449888 None:intergenic 45.0%
TTGTACTCGCTGGACTCTTT+AGG + chr3_4:18449918-18449937 Msa0493430:intron 45.0%
TCTCAAGTGTTTGTCCACCA+TGG - chr3_4:18450219-18450238 None:intergenic 45.0%
!! GAGTGAGACACTGACTTGAT+TGG + chr3_4:18450304-18450323 Msa0493430:intron 45.0%
AGGTGAAACGGTGACTTGAT+TGG - chr3_4:18450417-18450436 None:intergenic 45.0%
TCAAGTCACCGTTTCACCTA+TGG + chr3_4:18450418-18450437 Msa0493430:intron 45.0%
!!! CATAGAACCGGCCTGTTTTT+TGG + chr3_4:18450507-18450526 Msa0493430:intron 45.0%
TCTCTCTCCAAAAAACAGGC+CGG - chr3_4:18450517-18450536 None:intergenic 45.0%
TTCTAGGTTGTTCCCCAAGT+GGG - chr3_4:18450596-18450615 None:intergenic 45.0%
GTAGACGTTACAGCACTTCT+AGG - chr3_4:18450612-18450631 None:intergenic 45.0%
TCAGTTGCTCCATTCTTGTG+AGG - chr3_4:18450650-18450669 None:intergenic 45.0%
GCAACTGAGACTGTTAACCA+AGG + chr3_4:18450662-18450681 Msa0493430:CDS 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_4:18450675-18450694 Msa0493430:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_4:18450682-18450701 None:intergenic 45.0%
! CGAGTTCTTCAGCTTTTGAG+AGG - chr3_4:18450761-18450780 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_4:18450807-18450826 None:intergenic 45.0%
!! TGTTGTCGAGGTTGGTTTAC+AGG + chr3_4:18450890-18450909 Msa0493430:CDS 45.0%
! GCTTTGATCTGTGTTGTTGG+TGG + chr3_4:18450921-18450940 Msa0493430:CDS 45.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_4:18449404-18449423 None:intergenic 50.0%
GCAAATTCTACGGTGGTCCA+TGG + chr3_4:18450199-18450218 Msa0493430:intron 50.0%
AATTCTACGGTGGTCCATGG+TGG + chr3_4:18450202-18450221 Msa0493430:intron 50.0%
! AGAGCGACATCGGTTGTCAT+TGG + chr3_4:18450454-18450473 Msa0493430:intron 50.0%
!!! GGCCTGTTTTTTGGAGAGAG+AGG + chr3_4:18450516-18450535 Msa0493430:intron 50.0%
CTTCTAGGTTGTTCCCCAAG+TGG - chr3_4:18450597-18450616 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_4:18450712-18450731 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_4:18450795-18450814 Msa0493430:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_4:18450816-18450835 None:intergenic 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_4:18450930-18450949 Msa0493430:CDS 50.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_4:18449404-18449423 None:intergenic 50.0%
GCAAATTCTACGGTGGTCCA+TGG + chr3_4:18450199-18450218 Msa0493430:intron 50.0%
AATTCTACGGTGGTCCATGG+TGG + chr3_4:18450202-18450221 Msa0493430:intron 50.0%
! AGAGCGACATCGGTTGTCAT+TGG + chr3_4:18450454-18450473 Msa0493430:intron 50.0%
!!! GGCCTGTTTTTTGGAGAGAG+AGG + chr3_4:18450516-18450535 Msa0493430:intron 50.0%
CTTCTAGGTTGTTCCCCAAG+TGG - chr3_4:18450597-18450616 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_4:18450712-18450731 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_4:18450795-18450814 Msa0493430:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_4:18450816-18450835 None:intergenic 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_4:18450930-18450949 Msa0493430:CDS 50.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_4:18450702-18450721 Msa0493430:CDS 55.0%
!! CGAGGTTGGTTTACAGGCTG+TGG + chr3_4:18450896-18450915 Msa0493430:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_4:18450939-18450958 Msa0493430:CDS 55.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_4:18450702-18450721 Msa0493430:CDS 55.0%
!! CGAGGTTGGTTTACAGGCTG+TGG + chr3_4:18450896-18450915 Msa0493430:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_4:18450939-18450958 Msa0493430:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 18449141 18451213 18449141 ID=Msa0493430;Name=Msa0493430
chr3_4 mRNA 18449141 18451213 18449141 ID=Msa0493430-mRNA-1;Parent=Msa0493430;Name=Msa0493430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|1|1|2|215|194
chr3_4 exon 18449141 18449456 18449141 ID=Msa0493430-mRNA-1:exon:5071;Parent=Msa0493430-mRNA-1
chr3_4 exon 18450579 18451213 18450579 ID=Msa0493430-mRNA-1:exon:5072;Parent=Msa0493430-mRNA-1
chr3_4 five_prime_UTR 18449141 18449291 18449141 ID=Msa0493430-mRNA-1:five_prime_utr;Parent=Msa0493430-mRNA-1
chr3_4 CDS 18449292 18449456 18449292 ID=Msa0493430-mRNA-1:cds;Parent=Msa0493430-mRNA-1
chr3_4 CDS 18450579 18450998 18450579 ID=Msa0493430-mRNA-1:cds;Parent=Msa0493430-mRNA-1
chr3_4 three_prime_UTR 18450999 18451213 18450999 ID=Msa0493430-mRNA-1:three_prime_utr;Parent=Msa0493430-mRNA-1
Gene Sequence

>Msa0493430

ATGATGATGACAATGAAGGCTTCAGCATCCATCTGTAGTAACAGCTTGATCTTCTATTCTCCTCCTTCAACACAAAACTCTCACACTTTCTCACCTTTTCTGGTCAAATCCATGGCTACTCCCAAACCAGTTCCTTCTGTCTCTAAAACTGTAGCTTCTAAAAAGAATTCAACTGTATTCCCACTTGGGGAACAACCTAGAAGTGCTGTAACGTCTACACAATCCGTTAAACTCCTCACAAGAATGGAGCAACTGAGACTGTTAACCAAGGCAGAGAAAGCAGGTTTATTATCAGCCGCCGAGAAAGCAGGATTATCGCTATCAACAATAGAGAAACTTGGTCTCCTCTCAAAAGCTGAAGAACTCGGTGTTTTATCAGCTGCTACTGATCCATCAACTCCAGGATCACTCTTCACACTCAGCTTTGTTTTACTTCTTTTAGGTCCTTTGTTTGTTTATCTTGTTCCAGAAGATAATGTTGTCGAGGTTGGTTTACAGGCTGTGGTTGCTTTGATCTGTGTTGTTGGTGGTTCTGCTGGTTTTGCTGGTTCAAGTTTTGTATCCAACTTGCAGAAAATAAAATAA

Protein sequence

>Msa0493430

MMMTMKASASICSNSLIFYSPPSTQNSHTFSPFLVKSMATPKPVPSVSKTVASKKNSTVFPLGEQPRSAVTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSAATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNVVEVGLQAVVALICVVGGSAGFAGSSFVSNLQKIK*