AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1182480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182480 MtrunA17_Chr8g0337611 98.177 384 7 0 1 384 49 432 0.0 784
Msa1182480 MtrunA17_Chr4g0003121 35.955 267 160 8 113 372 113 375 3.73e-43 154
Msa1182480 MtrunA17_Chr2g0324141 24.161 298 171 10 129 384 28 312 5.54e-16 78.2
Msa1182480 MtrunA17_Chr5g0423381 21.678 286 176 8 125 382 74 339 6.26e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182480 AT4G12830.1 69.744 390 104 3 5 382 2 389 0.0 565
Msa1182480 AT1G52510.1 35.556 270 157 9 113 372 110 372 1.03e-41 150
Msa1182480 AT1G52510.2 36.199 221 127 7 159 372 15 228 7.80e-32 120
Msa1182480 AT5G19850.1 22.680 291 177 8 120 382 88 358 1.67e-14 74.7

Find 115 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGGACAACTTATTTA+TGG 0.150873 8_1:+17612302 Msa1182480:CDS
GACATTTCCCTATCCAAATT+TGG 0.151833 8_1:-17612531 None:intergenic
CAGATATTCAAATCCAAATT+TGG 0.181049 8_1:+17612518 Msa1182480:three_prime_UTR
AAGCTACCGGCGATCGTTTC+AGG 0.185171 8_1:+17608495 Msa1182480:CDS
ATGATATTGCAATTAAAATT+AGG 0.215553 8_1:+17612490 Msa1182480:three_prime_UTR
CACCTTGAGGTCTTTCTTCA+TGG 0.220882 8_1:-17610390 None:intergenic
GGTGTAATCAAACCCATATT+TGG 0.223751 8_1:-17609315 None:intergenic
GATAAGCCTCAACCCAAATA+TGG 0.229732 8_1:+17609302 Msa1182480:CDS
TTGGAACTTCAATAAGCTTA+TGG 0.259244 8_1:-17610830 None:intergenic
AATCTTCTCCTGGTGTTTGC+TGG 0.286979 8_1:-17609788 None:intergenic
TAGCAGAAAGTTGCTGAATA+TGG 0.290646 8_1:-17610128 None:intergenic
GTTAAAGCTTATTCAATTCC+TGG 0.300530 8_1:+17608416 Msa1182480:CDS
AAACCATCACCAACAGAAAT+AGG 0.308975 8_1:-17607758 None:intergenic
TTGGTTTGGTTTGGTTTGAT+TGG 0.337950 8_1:-17607495 None:intergenic
CCACAAAGCGTTTCCATTCA+AGG 0.347600 8_1:+17607601 Msa1182480:CDS
GCTTCAGAGTCTTCCTTGAA+TGG 0.347881 8_1:-17607614 None:intergenic
CGTTCGAACCACCGTATGTT+GGG 0.361605 8_1:+17610749 Msa1182480:CDS
GGGTTTGATTACACCCTTGA+TGG 0.364119 8_1:+17609323 Msa1182480:CDS
CTGGCATACTTAACTACAAC+TGG 0.368426 8_1:-17609769 None:intergenic
AGAAGACCCTATCTCATATC+TGG 0.369423 8_1:+17610332 Msa1182480:CDS
GAAAGAAGCACTGGTTGGTT+TGG 0.380362 8_1:-17607509 None:intergenic
GTGTAATCAAACCCATATTT+GGG 0.382561 8_1:-17609314 None:intergenic
GCTTATTCAATTCCTGGAAC+TGG 0.388136 8_1:+17608422 Msa1182480:CDS
TATCTCATATCTGGCTCCTC+AGG 0.391596 8_1:+17610341 Msa1182480:CDS
TTTGGTTTGGTTTGATTGGT+TGG 0.397970 8_1:-17607491 None:intergenic
GGATAATGTAGGCGGAAGTT+TGG 0.399387 8_1:-17610107 None:intergenic
CTGAACTGTAGTACTTCAAA+TGG 0.399768 8_1:+17607636 Msa1182480:CDS
ATGGTTTAAGCAAGGGAAAA+TGG 0.404912 8_1:+17607923 Msa1182480:CDS
CATGTGTTTGAATATATACT+TGG 0.408290 8_1:-17612422 None:intergenic
AAGCACTGGTTGGTTTGGTT+TGG 0.410539 8_1:-17607504 None:intergenic
CTGGATGCTCCTATTTCTGT+TGG 0.413992 8_1:+17607749 Msa1182480:CDS
TGCTTAAACCATTCATCACT+TGG 0.420796 8_1:-17607912 None:intergenic
GAGGTCTTTCTTCATGGTCC+TGG 0.421428 8_1:-17610384 None:intergenic
TGAGGAGCCAGATATGAGAT+AGG 0.421810 8_1:-17610339 None:intergenic
CCTTGAATGGAAACGCTTTG+TGG 0.427410 8_1:-17607601 None:intergenic
GCTTGTGAGTGCTTTGTCAC+TGG 0.428242 8_1:-17610267 None:intergenic
TTGGACAACAAGTGAGACTT+TGG 0.432432 8_1:-17609646 None:intergenic
AATCCATGGTTTCCCTTCAC+AGG 0.438753 8_1:+17608807 Msa1182480:CDS
TGTTACGGCGCGATAGTCCT+TGG 0.439215 8_1:-17608942 None:intergenic
ATCGCGCCGTAACATTTGAT+TGG 0.446745 8_1:+17608951 Msa1182480:CDS
GCTCCTATTTCTGTTGGTGA+TGG 0.453847 8_1:+17607755 Msa1182480:CDS
AAGAAGAATGAAGGTGAGAA+TGG 0.456602 8_1:-17607578 None:intergenic
AACCATTCATCACTTGGATT+AGG 0.456785 8_1:-17607906 None:intergenic
TGCAGAATATGTGTCATCAT+TGG 0.457009 8_1:+17609596 Msa1182480:intron
AACTTCAATAAGCTTATGGT+TGG 0.461173 8_1:-17610826 None:intergenic
GCTGCAGGATGATTATCTTC+TGG 0.462577 8_1:+17607730 Msa1182480:intron
ATTCAAATCCAAATTTGGAT+AGG 0.466262 8_1:+17612523 Msa1182480:three_prime_UTR
TTAAGTTGTTAATCTTCTCC+TGG 0.467916 8_1:-17609798 None:intergenic
AGGCGGAAGTTTGGCATGTT+GGG 0.468596 8_1:-17610098 None:intergenic
GAAGATTGCGGCGAAGAACT+TGG 0.471562 8_1:+17612287 Msa1182480:CDS
TCAAACCCATATTTGGGTTG+AGG 0.472894 8_1:-17609308 None:intergenic
GCTTTGTCACTGGCCCTCAA+TGG 0.477131 8_1:-17610257 None:intergenic
ATAAGCCTCAACCCAAATAT+GGG 0.481310 8_1:+17609303 Msa1182480:CDS
TGAAGCATGAAAGGCTTGAA+TGG 0.482643 8_1:-17607541 None:intergenic
TTCAAATCCAAATTTGGATA+GGG 0.488406 8_1:+17612524 Msa1182480:three_prime_UTR
CAATACTACAGGACAAAAGT+TGG 0.490728 8_1:+17610724 Msa1182480:CDS
ATCTCTCTGGCCCCAACATA+CGG 0.494352 8_1:-17610760 None:intergenic
TAGGCGGAAGTTTGGCATGT+TGG 0.504195 8_1:-17610099 None:intergenic
ATATTTCCTTCAGAGGTATG+TGG 0.509867 8_1:+17610689 Msa1182480:intron
GATTGGTTGGAGAATGAAGA+GGG 0.510333 8_1:-17607478 None:intergenic
CAAATGAAACTCACCTGTGA+AGG 0.512957 8_1:-17608820 None:intergenic
ATCTCATATCTGGCTCCTCA+GGG 0.516512 8_1:+17610342 Msa1182480:CDS
CTAGGCATATTCTTATCGTA+AGG 0.516855 8_1:+17608904 Msa1182480:intron
AGCTCAACCAGCGATCTCTC+TGG 0.519566 8_1:-17610773 None:intergenic
CACACAAGCAATTACCATCA+AGG 0.522044 8_1:-17609337 None:intergenic
ACCTAGCCAATCAAATGTTA+CGG 0.522106 8_1:-17608957 None:intergenic
CGATAGTCCTTGGAGAGTAC+AGG 0.523875 8_1:-17608932 None:intergenic
TTGCATTGAATGCAATTACC+AGG 0.527458 8_1:+17610366 Msa1182480:CDS
ATCACAGGAAAATATTCAGA+TGG 0.537957 8_1:+17607882 Msa1182480:intron
GGCCTAATCCAAGTGATGAA+TGG 0.538010 8_1:+17607904 Msa1182480:CDS
GTGATGAATGGTTTAAGCAA+GGG 0.543761 8_1:+17607916 Msa1182480:CDS
ACAAGAAGATGAAGCATGAA+AGG 0.547538 8_1:-17607550 None:intergenic
ATATTCAGCAACTTTCTGCT+AGG 0.549936 8_1:+17610130 Msa1182480:CDS
CCTTCAGTGATATTAATCCA+TGG 0.554816 8_1:+17608793 Msa1182480:CDS
AATATATACTTGGCCTACAC+AGG 0.555459 8_1:-17612412 None:intergenic
GGTGATGGTTTCTCTTTCAG+TGG 0.555932 8_1:+17607770 Msa1182480:CDS
ACGTTCGAACCACCGTATGT+TGG 0.561725 8_1:+17610748 Msa1182480:CDS
GGATATGCAAACAATACTAC+AGG 0.564010 8_1:+17610713 Msa1182480:CDS
ATGTGAAATTTAACCTGTGT+AGG 0.564736 8_1:+17612399 Msa1182480:three_prime_UTR
GATGGTTTCTCTTTCAGTGG+AGG 0.567845 8_1:+17607773 Msa1182480:CDS
TAAGTATGCCAGCAAACACC+AGG 0.570359 8_1:+17609780 Msa1182480:CDS
TAAGCTTATTGAAGTTCCAA+AGG 0.573364 8_1:+17610833 Msa1182480:CDS
CCATGGATTAATATCACTGA+AGG 0.576210 8_1:-17608793 None:intergenic
GAGTGCTTAGGATCCATTGA+GGG 0.577421 8_1:+17610244 Msa1182480:intron
GGAGTGGAAGATTTCTGCAA+AGG 0.578345 8_1:+17610801 Msa1182480:CDS
AATGAAAGAAGAAGATGCAA+TGG 0.582732 8_1:+17610304 Msa1182480:CDS
TGCATGAAAGAAGCACTGGT+TGG 0.585809 8_1:-17607514 None:intergenic
GTTCGAACCACCGTATGTTG+GGG 0.588100 8_1:+17610750 Msa1182480:CDS
GACAAAGCACTCACAAGCTG+TGG 0.588914 8_1:+17610272 Msa1182480:CDS
TTGCTGAATATGGATAATGT+AGG 0.590660 8_1:-17610118 None:intergenic
GCATCAAAAGTACTAACTAA+CGG 0.591658 8_1:+17607421 Msa1182480:five_prime_UTR
CTGGTTGAGCTACGATGGAG+TGG 0.595244 8_1:+17610785 Msa1182480:CDS
AGTGATGAATGGTTTAAGCA+AGG 0.595928 8_1:+17607915 Msa1182480:CDS
AAATGAAACTCACCTGTGAA+GGG 0.596087 8_1:-17608819 None:intergenic
TTAGGCTGGACATCATGCAC+AGG 0.598886 8_1:+17612265 Msa1182480:intron
GAGGAGCCAGATATGAGATA+GGG 0.599072 8_1:-17610338 None:intergenic
GCTTTGTGGAAGAAGAATGA+AGG 0.601068 8_1:-17607587 None:intergenic
GGTTCTTCCTGTACTCTCCA+AGG 0.602630 8_1:+17608925 Msa1182480:CDS
ACACAAGCAATTACCATCAA+GGG 0.603330 8_1:-17609336 None:intergenic
GGTACTAGCTCTCAAGCTAC+CGG 0.606037 8_1:+17608482 Msa1182480:CDS
GATCGCTGGTTGAGCTACGA+TGG 0.607809 8_1:+17610780 Msa1182480:CDS
GACCATGAAGAAAGACCTCA+AGG 0.614701 8_1:+17610388 Msa1182480:CDS
TCACAGGAAAATATTCAGAT+GGG 0.618633 8_1:+17607883 Msa1182480:intron
GCCGTAACATTTGATTGGCT+AGG 0.627082 8_1:+17608956 Msa1182480:CDS
TCATTGCATGAAAGAAGCAC+TGG 0.629562 8_1:-17607518 None:intergenic
TCACCTGTGAAGGGAAACCA+TGG 0.629688 8_1:-17608810 None:intergenic
TGAGTGCTTAGGATCCATTG+AGG 0.634967 8_1:+17610243 Msa1182480:intron
TGATTGGTTGGAGAATGAAG+AGG 0.641688 8_1:-17607479 None:intergenic
GTTGGGGCCAGAGAGATCGC+TGG 0.642573 8_1:+17610766 Msa1182480:CDS
CTGAATATGGATAATGTAGG+CGG 0.644708 8_1:-17610115 None:intergenic
CATCATGCACAGGAAGATTG+CGG 0.645709 8_1:+17612275 Msa1182480:CDS
TTTCCTTCAGAGGTATGTGG+AGG 0.652255 8_1:+17610692 Msa1182480:intron
TAATTACCTGAAACGATCGC+CGG 0.653802 8_1:-17608501 None:intergenic
TCTCTGGCCCCAACATACGG+TGG 0.693967 8_1:-17610757 None:intergenic
TGCATTCAATGCAAACCCTG+AGG 0.721168 8_1:-17610357 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTACATACTTTTTTT+TGG - chr8_1:17610612-17610631 None:intergenic 10.0%
!!! ATGTAATTCTGAAATATTAT+TGG + chr8_1:17607858-17607877 Msa1182480:intron 15.0%
!! ATGAAGTTCAAATAATAAAA+GGG - chr8_1:17608320-17608339 None:intergenic 15.0%
!! AATGAAGTTCAAATAATAAA+AGG - chr8_1:17608321-17608340 None:intergenic 15.0%
!! AATTAAGAAAAATATGACAT+AGG + chr8_1:17608581-17608600 Msa1182480:intron 15.0%
!! ATTGATATAAACCAAATTAA+TGG + chr8_1:17609043-17609062 Msa1182480:intron 15.0%
!!! TAGTTTGTTAATGTTATTTT+TGG + chr8_1:17609149-17609168 Msa1182480:intron 15.0%
!!! AGTTTGTTAATGTTATTTTT+GGG + chr8_1:17609150-17609169 Msa1182480:intron 15.0%
!!! AAGAAAGTATTTCTTATTAA+AGG - chr8_1:17610020-17610039 None:intergenic 15.0%
!!! TAATATAAAAATTGAGTTGA+AGG + chr8_1:17611349-17611368 Msa1182480:intron 15.0%
!! TTCATACTAAAAAAACATTT+CGG - chr8_1:17612136-17612155 None:intergenic 15.0%
!! ATGATATTGCAATTAAAATT+AGG + chr8_1:17612490-17612509 Msa1182480:three_prime_UTR 15.0%
!! ATAAATCTATGATCCAAAAA+AGG - chr8_1:17607822-17607841 None:intergenic 20.0%
!!! TAACAAATTTTTGTCACATA+GGG - chr8_1:17608238-17608257 None:intergenic 20.0%
!! AATCATATCAACAACAAAAT+TGG - chr8_1:17608394-17608413 None:intergenic 20.0%
!!! ATTTTGTTGTTGATATGATT+AGG + chr8_1:17608394-17608413 Msa1182480:intron 20.0%
!! AGAAATCATATTAATTGTGA+TGG - chr8_1:17608874-17608893 None:intergenic 20.0%
!! TAACATTAACAAACTAAAGT+TGG - chr8_1:17609145-17609164 None:intergenic 20.0%
!!! AGAATTTATTTTGCTTACTA+AGG + chr8_1:17609502-17609521 Msa1182480:intron 20.0%
!!! TTTTATTTAAGCAAAGTAAC+AGG - chr8_1:17611016-17611035 None:intergenic 20.0%
!! ACATATACTAATAGAAACTA+TGG + chr8_1:17611088-17611107 Msa1182480:intron 20.0%
!!! CAGATTTTTAAAAATAGAGA+GGG + chr8_1:17611376-17611395 Msa1182480:intron 20.0%
!!! TGAATGTAGTTTTTAATGAA+AGG + chr8_1:17611895-17611914 Msa1182480:intron 20.0%
!! ATATGTTTCTTTTCCTATGT+TGG + chr8_1:17607399-17607418 Msa1182480:five_prime_UTR 25.0%
!!! CTCTTTTTCATTTCCTTTTT+TGG + chr8_1:17607806-17607825 Msa1182480:intron 25.0%
! TGAAATATTATTGGAATCAC+AGG + chr8_1:17607867-17607886 Msa1182480:intron 25.0%
!! TTTTGACAGCATATAAGAAA+TGG - chr8_1:17607975-17607994 None:intergenic 25.0%
!! CTAACAAATTTTTGTCACAT+AGG - chr8_1:17608239-17608258 None:intergenic 25.0%
! TAAATTGATTGTGAAGTGTA+AGG + chr8_1:17608265-17608284 Msa1182480:intron 25.0%
!! ATTTGAACTTCATTAAGTTG+AGG + chr8_1:17608327-17608346 Msa1182480:intron 25.0%
!! AAAGCAAAAGATCCAATTTT+TGG + chr8_1:17608449-17608468 Msa1182480:CDS 25.0%
!! AAGCAAAAGATCCAATTTTT+GGG + chr8_1:17608450-17608469 Msa1182480:CDS 25.0%
! ATATGACATAGGAAAAATTG+CGG + chr8_1:17608592-17608611 Msa1182480:intron 25.0%
! TATGATTCAATTAGTAACGT+AGG - chr8_1:17608712-17608731 None:intergenic 25.0%
!! ATATGATTTTCCACAATAGA+TGG + chr8_1:17608740-17608759 Msa1182480:intron 25.0%
!!! TCTAAAAGCATCCATTAATT+TGG - chr8_1:17609057-17609076 None:intergenic 25.0%
! ATCTTTCAGAACAAATATTG+AGG + chr8_1:17609118-17609137 Msa1182480:intron 25.0%
! TCTTTCAGAACAAATATTGA+GGG + chr8_1:17609119-17609138 Msa1182480:intron 25.0%
! GTAAGCAAAATAAATTCTAG+AGG - chr8_1:17609500-17609519 None:intergenic 25.0%
! CAACTCAAAAATAAACTTAC+AGG - chr8_1:17609838-17609857 None:intergenic 25.0%
! AGGTATTAATAGTGTTCAAT+TGG - chr8_1:17610000-17610019 None:intergenic 25.0%
!! TCTTCTTCTTTCATTTTGTA+GGG - chr8_1:17610299-17610318 None:intergenic 25.0%
!! ATCTTCTTCTTTCATTTTGT+AGG - chr8_1:17610300-17610319 None:intergenic 25.0%
! AAAGATAAATATTCACCTTG+AGG - chr8_1:17610406-17610425 None:intergenic 25.0%
!! AAACATTTTTGACAATGCTT+TGG - chr8_1:17610449-17610468 None:intergenic 25.0%
! TATTTAACATATACACGATG+AGG + chr8_1:17610516-17610535 Msa1182480:intron 25.0%
! TATCTGTGATTTGAGAAATT+TGG + chr8_1:17610652-17610671 Msa1182480:intron 25.0%
! TTAATTCATATTTCCTTCAG+AGG + chr8_1:17610682-17610701 Msa1182480:intron 25.0%
! CTTAAGACAAATATGTGAAA+AGG - chr8_1:17610873-17610892 None:intergenic 25.0%
!! AGGAAAAGAATGATACTTTT+TGG - chr8_1:17610934-17610953 None:intergenic 25.0%
! TTAAGAAAGAAATGCTTCTT+AGG - chr8_1:17611062-17611081 None:intergenic 25.0%
! TGACATTAATTCGTAGTATA+TGG + chr8_1:17611179-17611198 Msa1182480:intron 25.0%
!!! GCAGATTTTTAAAAATAGAG+AGG + chr8_1:17611375-17611394 Msa1182480:intron 25.0%
!! ATAAACTTCTTGCTCTTTTT+AGG + chr8_1:17612247-17612266 Msa1182480:intron 25.0%
! CATGTGTTTGAATATATACT+TGG - chr8_1:17612425-17612444 None:intergenic 25.0%
! CAGATATTCAAATCCAAATT+TGG + chr8_1:17612518-17612537 Msa1182480:three_prime_UTR 25.0%
! ATTCAAATCCAAATTTGGAT+AGG + chr8_1:17612523-17612542 Msa1182480:three_prime_UTR 25.0%
! TTCAAATCCAAATTTGGATA+GGG + chr8_1:17612524-17612543 Msa1182480:three_prime_UTR 25.0%
!! GCATCAAAAGTACTAACTAA+CGG + chr8_1:17607421-17607440 Msa1182480:five_prime_UTR 30.0%
AGTTTGTGTCTTTGTGTTAA+TGG + chr8_1:17607665-17607684 Msa1182480:intron 30.0%
ATTGGAAACAAAGTATGAAG+AGG - chr8_1:17607710-17607729 None:intergenic 30.0%
ATCACAGGAAAATATTCAGA+TGG + chr8_1:17607882-17607901 Msa1182480:intron 30.0%
TCACAGGAAAATATTCAGAT+GGG + chr8_1:17607883-17607902 Msa1182480:intron 30.0%
AACCATTGTTCAAGATAACT+CGG - chr8_1:17608112-17608131 None:intergenic 30.0%
TATCTTGAACAATGGTTAGA+AGG + chr8_1:17608115-17608134 Msa1182480:intron 30.0%
ATCTTGAACAATGGTTAGAA+GGG + chr8_1:17608116-17608135 Msa1182480:intron 30.0%
CAGAATTGTTTACATAACTG+TGG - chr8_1:17608203-17608222 None:intergenic 30.0%
GTTAAAGCTTATTCAATTCC+TGG + chr8_1:17608416-17608435 Msa1182480:CDS 30.0%
! AGTTTCATTTGTTTCTTCCT+AGG + chr8_1:17608832-17608851 Msa1182480:intron 30.0%
GATCATATAAGAATATGCCT+AGG - chr8_1:17608852-17608871 None:intergenic 30.0%
TTGTGTCAATGCTTACTTTA+TGG + chr8_1:17609014-17609033 Msa1182480:intron 30.0%
AAATGACAGCTTGATTATCA+AGG - chr8_1:17609188-17609207 None:intergenic 30.0%
CCTGAAACAGAAAAAGAAAA+TGG - chr8_1:17609269-17609288 None:intergenic 30.0%
! CCATTTTCTTTTTCTGTTTC+AGG + chr8_1:17609266-17609285 Msa1182480:intron 30.0%
! TCTTTTTCTGTTTCAGGATT+TGG + chr8_1:17609272-17609291 Msa1182480:intron 30.0%
! CTTTTTCTGTTTCAGGATTT+GGG + chr8_1:17609273-17609292 Msa1182480:intron 30.0%
GTGTAATCAAACCCATATTT+GGG - chr8_1:17609317-17609336 None:intergenic 30.0%
!! AGGCTAAAAATCAGTTTTAG+AGG + chr8_1:17609403-17609422 Msa1182480:intron 30.0%
!!! CTAAAAATCAGTTTTAGAGG+CGG + chr8_1:17609406-17609425 Msa1182480:intron 30.0%
!! TATTAGTCTTGTTTGTTTGC+AGG + chr8_1:17609735-17609754 Msa1182480:intron 30.0%
!! ATTAGTCTTGTTTGTTTGCA+GGG + chr8_1:17609736-17609755 Msa1182480:intron 30.0%
! TTAAGTTGTTAATCTTCTCC+TGG - chr8_1:17609801-17609820 None:intergenic 30.0%
CTCAAAAATAAACTTACAGG+TGG - chr8_1:17609835-17609854 None:intergenic 30.0%
TTGCTGAATATGGATAATGT+AGG - chr8_1:17610121-17610140 None:intergenic 30.0%
AATGAAAGAAGAAGATGCAA+TGG + chr8_1:17610304-17610323 Msa1182480:CDS 30.0%
AACTTCAATAAGCTTATGGT+TGG - chr8_1:17610829-17610848 None:intergenic 30.0%
TTGGAACTTCAATAAGCTTA+TGG - chr8_1:17610833-17610852 None:intergenic 30.0%
TAAGCTTATTGAAGTTCCAA+AGG + chr8_1:17610833-17610852 Msa1182480:CDS 30.0%
TTCACATATTTGTCTTAAGC+TGG + chr8_1:17610874-17610893 Msa1182480:intron 30.0%
GTTTATGATTGCATACTCAT+TGG - chr8_1:17611040-17611059 None:intergenic 30.0%
AACTCTTCACAATGAAAATG+TGG + chr8_1:17611128-17611147 Msa1182480:intron 30.0%
!! TACAAGGGGCATTTATAAAT+CGG - chr8_1:17611158-17611177 None:intergenic 30.0%
ACGAATTAATGTCACTACAA+GGG - chr8_1:17611173-17611192 None:intergenic 30.0%
TACGAATTAATGTCACTACA+AGG - chr8_1:17611174-17611193 None:intergenic 30.0%
!!! TGACTGTTTTGATGATAGTT+TGG + chr8_1:17611230-17611249 Msa1182480:intron 30.0%
!!! TGTTTTGATGATAGTTTGGT+AGG + chr8_1:17611234-17611253 Msa1182480:intron 30.0%
AAAAGTTGAATTTCCACACA+AGG - chr8_1:17611612-17611631 None:intergenic 30.0%
! TCAACTTTTTGTCAGAAGAA+TGG + chr8_1:17611623-17611642 Msa1182480:intron 30.0%
AGGCAAGAAATATAAATCTC+TGG + chr8_1:17611647-17611666 Msa1182480:intron 30.0%
AGATCTAGTATCTAGTATTG+TGG + chr8_1:17611741-17611760 Msa1182480:intron 30.0%
TGTGATTAAAGCAGTTTCAT+AGG + chr8_1:17611803-17611822 Msa1182480:intron 30.0%
GTGATTAAAGCAGTTTCATA+GGG + chr8_1:17611804-17611823 Msa1182480:intron 30.0%
TTTCATAGGGAGCTTAAATT+GGG + chr8_1:17611817-17611836 Msa1182480:intron 30.0%
TTTAATGAAAGGACCAAATG+CGG + chr8_1:17611906-17611925 Msa1182480:intron 30.0%
! CAAACTTGTTCGAATTCTTA+AGG - chr8_1:17611981-17612000 None:intergenic 30.0%
CTTAAGAATTCGAACAAGTT+TGG + chr8_1:17611979-17611998 Msa1182480:intron 30.0%
AGTGTTAGAGTTAGACATAT+AGG + chr8_1:17612035-17612054 Msa1182480:intron 30.0%
ACATCTTTCTATTCTCCTAA+GGG + chr8_1:17612215-17612234 Msa1182480:intron 30.0%
GTTTATTGTAACATTCCCTT+AGG - chr8_1:17612233-17612252 None:intergenic 30.0%
GAACTTGGACAACTTATTTA+TGG + chr8_1:17612302-17612321 Msa1182480:CDS 30.0%
ATGTGAAATTTAACCTGTGT+AGG + chr8_1:17612399-17612418 Msa1182480:three_prime_UTR 30.0%
! AGTACTTTTGATGCCAACAT+AGG - chr8_1:17607415-17607434 None:intergenic 35.0%
GAGGGAAAAAGTAGCTTAAT+AGG - chr8_1:17607463-17607482 None:intergenic 35.0%
!! TTTGGTTTGGTTTGATTGGT+TGG - chr8_1:17607494-17607513 None:intergenic 35.0%
!! TTGGTTTGGTTTGGTTTGAT+TGG - chr8_1:17607498-17607517 None:intergenic 35.0%
ACAAGAAGATGAAGCATGAA+AGG - chr8_1:17607553-17607572 None:intergenic 35.0%
AAGAAGAATGAAGGTGAGAA+TGG - chr8_1:17607581-17607600 None:intergenic 35.0%
CTGAACTGTAGTACTTCAAA+TGG + chr8_1:17607636-17607655 Msa1182480:CDS 35.0%
AAACCATCACCAACAGAAAT+AGG - chr8_1:17607761-17607780 None:intergenic 35.0%
AACCATTCATCACTTGGATT+AGG - chr8_1:17607909-17607928 None:intergenic 35.0%
TGCTTAAACCATTCATCACT+TGG - chr8_1:17607915-17607934 None:intergenic 35.0%
AGTGATGAATGGTTTAAGCA+AGG + chr8_1:17607915-17607934 Msa1182480:CDS 35.0%
GTGATGAATGGTTTAAGCAA+GGG + chr8_1:17607916-17607935 Msa1182480:CDS 35.0%
ATGGTTTAAGCAAGGGAAAA+TGG + chr8_1:17607923-17607942 Msa1182480:CDS 35.0%
!!! TTTTTTTTGTCTTACCCCTC+CGG + chr8_1:17608005-17608024 Msa1182480:intron 35.0%
ACCATTGTTCAAGATAACTC+GGG - chr8_1:17608111-17608130 None:intergenic 35.0%
TCTTGAACAATGGTTAGAAG+GGG + chr8_1:17608117-17608136 Msa1182480:intron 35.0%
!! TCCAATTTTTGGGCTAACAA+TGG + chr8_1:17608460-17608479 Msa1182480:CDS 35.0%
!! CCAATTTTTGGGCTAACAAT+GGG + chr8_1:17608461-17608480 Msa1182480:CDS 35.0%
! CCATGGATTAATATCACTGA+AGG - chr8_1:17608796-17608815 None:intergenic 35.0%
CCTTCAGTGATATTAATCCA+TGG + chr8_1:17608793-17608812 Msa1182480:CDS 35.0%
AAATGAAACTCACCTGTGAA+GGG - chr8_1:17608822-17608841 None:intergenic 35.0%
CTTACGATAAGAATATGCCT+AGG - chr8_1:17608906-17608925 None:intergenic 35.0%
CTAGGCATATTCTTATCGTA+AGG + chr8_1:17608904-17608923 Msa1182480:intron 35.0%
ACCTAGCCAATCAAATGTTA+CGG - chr8_1:17608960-17608979 None:intergenic 35.0%
!! ATGGATGCTTTTAGAAGCAT+AGG + chr8_1:17609062-17609081 Msa1182480:intron 35.0%
!! TGCTTTTAGAAGCATAGGAT+TGG + chr8_1:17609067-17609086 Msa1182480:intron 35.0%
ACTCAAAGTTAGTAGAGATG+TGG + chr8_1:17609209-17609228 Msa1182480:intron 35.0%
ATAAGCCTCAACCCAAATAT+GGG + chr8_1:17609303-17609322 Msa1182480:CDS 35.0%
GGTGTAATCAAACCCATATT+TGG - chr8_1:17609318-17609337 None:intergenic 35.0%
ACACAAGCAATTACCATCAA+GGG - chr8_1:17609339-17609358 None:intergenic 35.0%
! TGAGTTGAACAATGCATTTG+AGG + chr8_1:17609383-17609402 Msa1182480:intron 35.0%
ATGATGACACATATTCTGCA+TGG - chr8_1:17609596-17609615 None:intergenic 35.0%
TGCAGAATATGTGTCATCAT+TGG + chr8_1:17609596-17609615 Msa1182480:intron 35.0%
TTGTCCAAGTAAGTTTCCAT+TGG + chr8_1:17609661-17609680 Msa1182480:intron 35.0%
TTAGCCAATGGAAACTTACT+TGG - chr8_1:17609668-17609687 None:intergenic 35.0%
CCATGATTCTTATTAGCCAA+TGG - chr8_1:17609680-17609699 None:intergenic 35.0%
! CCATTGGCTAATAAGAATCA+TGG + chr8_1:17609677-17609696 Msa1182480:intron 35.0%
CTGAATATGGATAATGTAGG+CGG - chr8_1:17610118-17610137 None:intergenic 35.0%
TAGCAGAAAGTTGCTGAATA+TGG - chr8_1:17610131-17610150 None:intergenic 35.0%
ATATTCAGCAACTTTCTGCT+AGG + chr8_1:17610130-17610149 Msa1182480:CDS 35.0%
! GCTAGGTGAAATATTTTCAC+AGG + chr8_1:17610147-17610166 Msa1182480:CDS 35.0%
ATCACATTACATGGAGTCTT+AGG - chr8_1:17610212-17610231 None:intergenic 35.0%
AGAGAGTCAATCACATTACA+TGG - chr8_1:17610221-17610240 None:intergenic 35.0%
TTGCATTGAATGCAATTACC+AGG + chr8_1:17610366-17610385 Msa1182480:CDS 35.0%
GTTCATAAGTCACACAAACA+AGG - chr8_1:17610478-17610497 None:intergenic 35.0%
! ATATTTCCTTCAGAGGTATG+TGG + chr8_1:17610689-17610708 Msa1182480:intron 35.0%
GGATATGCAAACAATACTAC+AGG + chr8_1:17610713-17610732 Msa1182480:CDS 35.0%
CAATACTACAGGACAAAAGT+TGG + chr8_1:17610724-17610743 Msa1182480:CDS 35.0%
GGAATCTAAGCATTTACCTT+TGG - chr8_1:17610852-17610871 None:intergenic 35.0%
CGAATTAATGTCACTACAAG+GGG - chr8_1:17611172-17611191 None:intergenic 35.0%
! CTAGAACTAGCTTAATCTCA+TGG + chr8_1:17611290-17611309 Msa1182480:intron 35.0%
! ATATTATGCACTCACTGACT+CGG - chr8_1:17611335-17611354 None:intergenic 35.0%
CAGTCTAAGTTCTTAGGAAT+AGG - chr8_1:17611485-17611504 None:intergenic 35.0%
TCCTAAGAACTTAGACTGTT+AGG + chr8_1:17611487-17611506 Msa1182480:intron 35.0%
ACCTAACAGTCTAAGTTCTT+AGG - chr8_1:17611491-17611510 None:intergenic 35.0%
TTCTAATACCATGTCAGGAA+TGG + chr8_1:17611688-17611707 Msa1182480:intron 35.0%
GTTTCATAGGGAGCTTAAAT+TGG + chr8_1:17611816-17611835 Msa1182480:intron 35.0%
CTAGGAAATACAGGAATATG+TGG + chr8_1:17611846-17611865 Msa1182480:intron 35.0%
GTTCGAATTCTTAAGGAACT+AGG - chr8_1:17611974-17611993 None:intergenic 35.0%
!! TTGCACAAAAGTACTATGCT+TGG + chr8_1:17612157-17612176 Msa1182480:intron 35.0%
AGTACTATGCTTGGAAACTA+TGG + chr8_1:17612166-17612185 Msa1182480:intron 35.0%
CACATCTTTCTATTCTCCTA+AGG + chr8_1:17612214-17612233 Msa1182480:intron 35.0%
AATATATACTTGGCCTACAC+AGG - chr8_1:17612415-17612434 None:intergenic 35.0%
GACATTTCCCTATCCAAATT+TGG - chr8_1:17612534-17612553 None:intergenic 35.0%
! GATTGGTTGGAGAATGAAGA+GGG - chr8_1:17607481-17607500 None:intergenic 40.0%
! TGATTGGTTGGAGAATGAAG+AGG - chr8_1:17607482-17607501 None:intergenic 40.0%
! TCATTGCATGAAAGAAGCAC+TGG - chr8_1:17607521-17607540 None:intergenic 40.0%
TGAAGCATGAAAGGCTTGAA+TGG - chr8_1:17607544-17607563 None:intergenic 40.0%
GCTTTGTGGAAGAAGAATGA+AGG - chr8_1:17607590-17607609 None:intergenic 40.0%
! TACTTTGTTTCCAATGCTGC+AGG + chr8_1:17607715-17607734 Msa1182480:intron 40.0%
AGATAATCATCCTGCAGCAT+TGG - chr8_1:17607728-17607747 None:intergenic 40.0%
ACTCAAGATTACCTAACCCT+CGG - chr8_1:17608034-17608053 None:intergenic 40.0%
TAGGTAATCTTGAGTTCAGC+TGG + chr8_1:17608039-17608058 Msa1182480:intron 40.0%
ATCCTGACTAGAACAATCGT+TGG - chr8_1:17608083-17608102 None:intergenic 40.0%
ACCCGAGTTATCTTGAACAA+TGG + chr8_1:17608107-17608126 Msa1182480:intron 40.0%
GCTTATTCAATTCCTGGAAC+TGG + chr8_1:17608422-17608441 Msa1182480:CDS 40.0%
!!! TTTGCTTTTTCACCAGTTCC+AGG - chr8_1:17608437-17608456 None:intergenic 40.0%
CCCATTGTTAGCCCAAAAAT+TGG - chr8_1:17608464-17608483 None:intergenic 40.0%
TAATTACCTGAAACGATCGC+CGG - chr8_1:17608504-17608523 None:intergenic 40.0%
CGACACAAAACCATCTATTG+TGG - chr8_1:17608753-17608772 None:intergenic 40.0%
!!! AGATGGTTTTGTGTCGAAAG+CGG + chr8_1:17608757-17608776 Msa1182480:intron 40.0%
CAAATGAAACTCACCTGTGA+AGG - chr8_1:17608823-17608842 None:intergenic 40.0%
TGATTTCTATGTTGCTGCCT+AGG + chr8_1:17608886-17608905 Msa1182480:intron 40.0%
GATAAGCCTCAACCCAAATA+TGG + chr8_1:17609302-17609321 Msa1182480:CDS 40.0%
!! TCAAACCCATATTTGGGTTG+AGG - chr8_1:17609311-17609330 None:intergenic 40.0%
CACACAAGCAATTACCATCA+AGG - chr8_1:17609340-17609359 None:intergenic 40.0%
TTGGACAACAAGTGAGACTT+TGG - chr8_1:17609649-17609668 None:intergenic 40.0%
CTGGCATACTTAACTACAAC+TGG - chr8_1:17609772-17609791 None:intergenic 40.0%
AGAAGACCCTATCTCATATC+TGG + chr8_1:17610332-17610351 Msa1182480:CDS 40.0%
! ATGCTCATATAGTAGCCTTG+CGG - chr8_1:17610966-17610985 None:intergenic 40.0%
AAGCAAAGTAACAGGTAACG+AGG - chr8_1:17611008-17611027 None:intergenic 40.0%
TAGGTTTGACGCTAAACTTC+AGG + chr8_1:17611253-17611272 Msa1182480:intron 40.0%
CTAGCTTAATCTCATGGATG+AGG + chr8_1:17611296-17611315 Msa1182480:intron 40.0%
!! TATTATGCACTCACTGACTC+GGG - chr8_1:17611334-17611353 None:intergenic 40.0%
!! ACCTCCTGAGCTTTGAAAAA+TGG + chr8_1:17611566-17611585 Msa1182480:intron 40.0%
!!! TTGGCCATTTTTCAAAGCTC+AGG - chr8_1:17611573-17611592 None:intergenic 40.0%
! CTTTTTGTCAGAAGAATGGC+AGG + chr8_1:17611627-17611646 Msa1182480:intron 40.0%
! AGAGGTTCTAATACCATGTC+AGG + chr8_1:17611683-17611702 Msa1182480:intron 40.0%
AAGATGATCCATTCCTGACA+TGG - chr8_1:17611699-17611718 None:intergenic 40.0%
TAGGGAGCTTAAATTGGGAA+AGG + chr8_1:17611822-17611841 Msa1182480:intron 40.0%
GCTTAAATTGGGAAAGGTCT+AGG + chr8_1:17611828-17611847 Msa1182480:intron 40.0%
! TTGATGATCAATGCCGCATT+TGG - chr8_1:17611922-17611941 None:intergenic 40.0%
CCAAGCTATCTTAGACAACA+AGG - chr8_1:17612078-17612097 None:intergenic 40.0%
! CCTTGTTGTCTAAGATAGCT+TGG + chr8_1:17612075-17612094 Msa1182480:intron 40.0%
!! ACTTCTTGCTCTTTTTAGGC+TGG + chr8_1:17612251-17612270 Msa1182480:intron 40.0%
!! AAGCACTGGTTGGTTTGGTT+TGG - chr8_1:17607507-17607526 None:intergenic 45.0%
!! GAAAGAAGCACTGGTTGGTT+TGG - chr8_1:17607512-17607531 None:intergenic 45.0%
!! TGCATGAAAGAAGCACTGGT+TGG - chr8_1:17607517-17607536 None:intergenic 45.0%
CCTTGAATGGAAACGCTTTG+TGG - chr8_1:17607604-17607623 None:intergenic 45.0%
! CCACAAAGCGTTTCCATTCA+AGG + chr8_1:17607601-17607620 Msa1182480:CDS 45.0%
GCTTCAGAGTCTTCCTTGAA+TGG - chr8_1:17607617-17607636 None:intergenic 45.0%
GCTGCAGGATGATTATCTTC+TGG + chr8_1:17607730-17607749 Msa1182480:intron 45.0%
!! CTGGATGCTCCTATTTCTGT+TGG + chr8_1:17607749-17607768 Msa1182480:CDS 45.0%
!! GCTCCTATTTCTGTTGGTGA+TGG + chr8_1:17607755-17607774 Msa1182480:CDS 45.0%
! GGTGATGGTTTCTCTTTCAG+TGG + chr8_1:17607770-17607789 Msa1182480:CDS 45.0%
GATGGTTTCTCTTTCAGTGG+AGG + chr8_1:17607773-17607792 Msa1182480:CDS 45.0%
GGCCTAATCCAAGTGATGAA+TGG + chr8_1:17607904-17607923 Msa1182480:CDS 45.0%
ATTACCTAACCCTCGGAAAC+CGG - chr8_1:17608027-17608046 None:intergenic 45.0%
TGCCAACGATTGTTCTAGTC+AGG + chr8_1:17608078-17608097 Msa1182480:intron 45.0%
AATCCATGGTTTCCCTTCAC+AGG + chr8_1:17608807-17608826 Msa1182480:CDS 45.0%
ATCGCGCCGTAACATTTGAT+TGG + chr8_1:17608951-17608970 Msa1182480:CDS 45.0%
! GCCGTAACATTTGATTGGCT+AGG + chr8_1:17608956-17608975 Msa1182480:CDS 45.0%
GGGTTTGATTACACCCTTGA+TGG + chr8_1:17609323-17609342 Msa1182480:CDS 45.0%
TAAGTATGCCAGCAAACACC+AGG + chr8_1:17609780-17609799 Msa1182480:CDS 45.0%
AATCTTCTCCTGGTGTTTGC+TGG - chr8_1:17609791-17609810 None:intergenic 45.0%
GGATAATGTAGGCGGAAGTT+TGG - chr8_1:17610110-17610129 None:intergenic 45.0%
TGACTCTCTTGTGAGTGCTT+AGG + chr8_1:17610232-17610251 Msa1182480:intron 45.0%
TGAGTGCTTAGGATCCATTG+AGG + chr8_1:17610243-17610262 Msa1182480:intron 45.0%
GAGTGCTTAGGATCCATTGA+GGG + chr8_1:17610244-17610263 Msa1182480:intron 45.0%
GAGGAGCCAGATATGAGATA+GGG - chr8_1:17610341-17610360 None:intergenic 45.0%
TGAGGAGCCAGATATGAGAT+AGG - chr8_1:17610342-17610361 None:intergenic 45.0%
! TATCTCATATCTGGCTCCTC+AGG + chr8_1:17610341-17610360 Msa1182480:CDS 45.0%
! ATCTCATATCTGGCTCCTCA+GGG + chr8_1:17610342-17610361 Msa1182480:CDS 45.0%
TGCATTCAATGCAAACCCTG+AGG - chr8_1:17610360-17610379 None:intergenic 45.0%
GACCATGAAGAAAGACCTCA+AGG + chr8_1:17610388-17610407 Msa1182480:CDS 45.0%
CACCTTGAGGTCTTTCTTCA+TGG - chr8_1:17610393-17610412 None:intergenic 45.0%
!! ACACGATGAGGTATTGTGAG+TGG + chr8_1:17610528-17610547 Msa1182480:intron 45.0%
! TTTCCTTCAGAGGTATGTGG+AGG + chr8_1:17610692-17610711 Msa1182480:intron 45.0%
TATCCTCCACATACCTCTGA+AGG - chr8_1:17610698-17610717 None:intergenic 45.0%
GGAGTGGAAGATTTCTGCAA+AGG + chr8_1:17610801-17610820 Msa1182480:CDS 45.0%
! TCATATAGTAGCCTTGCGGA+AGG - chr8_1:17610962-17610981 None:intergenic 45.0%
CTCATGGATGAGGAATGTCA+AGG + chr8_1:17611306-17611325 Msa1182480:intron 45.0%
GGTGCATTAGAGAAACGGTA+TGG - chr8_1:17611533-17611552 None:intergenic 45.0%
! GAGGAGGTGCATTAGAGAAA+CGG - chr8_1:17611538-17611557 None:intergenic 45.0%
!!! GCCATTTTTCAAAGCTCAGG+AGG - chr8_1:17611570-17611589 None:intergenic 45.0%
AGGTAGATGAGCTAGTGCAT+TGG - chr8_1:17611592-17611611 None:intergenic 45.0%
ACTAGCTCATCTACCTTGTG+TGG + chr8_1:17611596-17611615 Msa1182480:intron 45.0%
TCTGGCGCACTAGATTATAG+AGG + chr8_1:17611665-17611684 Msa1182480:intron 45.0%
TGCTGCTATAGCACAGTACA+TGG - chr8_1:17611767-17611786 None:intergenic 45.0%
GGGAAAGGTCTAGGAAATAC+AGG + chr8_1:17611837-17611856 Msa1182480:intron 45.0%
TGATCATCAACACTGGTGTC+TGG + chr8_1:17611932-17611951 Msa1182480:intron 45.0%
CATCATGCACAGGAAGATTG+CGG + chr8_1:17612275-17612294 Msa1182480:CDS 45.0%
! GGTACTAGCTCTCAAGCTAC+CGG + chr8_1:17608482-17608501 Msa1182480:CDS 50.0%
TCACCTGTGAAGGGAAACCA+TGG - chr8_1:17608813-17608832 None:intergenic 50.0%
GGTTCTTCCTGTACTCTCCA+AGG + chr8_1:17608925-17608944 Msa1182480:CDS 50.0%
! CGATAGTCCTTGGAGAGTAC+AGG - chr8_1:17608935-17608954 None:intergenic 50.0%
AGGCGGAAGTTTGGCATGTT+GGG - chr8_1:17610101-17610120 None:intergenic 50.0%
TAGGCGGAAGTTTGGCATGT+TGG - chr8_1:17610102-17610121 None:intergenic 50.0%
GCTTGTGAGTGCTTTGTCAC+TGG - chr8_1:17610270-17610289 None:intergenic 50.0%
! GACAAAGCACTCACAAGCTG+TGG + chr8_1:17610272-17610291 Msa1182480:CDS 50.0%
GAGGTCTTTCTTCATGGTCC+TGG - chr8_1:17610387-17610406 None:intergenic 50.0%
TGTGAGTGGTTTCGTGACCT+TGG + chr8_1:17610542-17610561 Msa1182480:intron 50.0%
CGACAGAGACTGAATCTCAG+AGG - chr8_1:17610577-17610596 None:intergenic 50.0%
ACGTTCGAACCACCGTATGT+TGG + chr8_1:17610748-17610767 Msa1182480:CDS 50.0%
CGTTCGAACCACCGTATGTT+GGG + chr8_1:17610749-17610768 Msa1182480:CDS 50.0%
GTTCGAACCACCGTATGTTG+GGG + chr8_1:17610750-17610769 Msa1182480:CDS 50.0%
ATCTCTCTGGCCCCAACATA+CGG - chr8_1:17610763-17610782 None:intergenic 50.0%
!! GCGGCATTGATCATCAACAC+TGG + chr8_1:17611925-17611944 Msa1182480:intron 50.0%
TTAGGCTGGACATCATGCAC+AGG + chr8_1:17612265-17612284 Msa1182480:intron 50.0%
GAAGATTGCGGCGAAGAACT+TGG + chr8_1:17612287-17612306 Msa1182480:CDS 50.0%
AAGCTACCGGCGATCGTTTC+AGG + chr8_1:17608495-17608514 Msa1182480:CDS 55.0%
TGTTACGGCGCGATAGTCCT+TGG - chr8_1:17608945-17608964 None:intergenic 55.0%
GCTTTGTCACTGGCCCTCAA+TGG - chr8_1:17610260-17610279 None:intergenic 55.0%
CTCAGAGGATCGTGACACCA+AGG - chr8_1:17610562-17610581 None:intergenic 55.0%
AGCTCAACCAGCGATCTCTC+TGG - chr8_1:17610776-17610795 None:intergenic 55.0%
! GATCGCTGGTTGAGCTACGA+TGG + chr8_1:17610780-17610799 Msa1182480:CDS 55.0%
CTGGTTGAGCTACGATGGAG+TGG + chr8_1:17610785-17610804 Msa1182480:CDS 55.0%
TTTCCTGCTTGCCTTCCGCA+AGG + chr8_1:17610948-17610967 Msa1182480:intron 55.0%
TCTTACCCCTCCGGTTTCCG+AGG + chr8_1:17608014-17608033 Msa1182480:intron 60.0%
CTTACCCCTCCGGTTTCCGA+GGG + chr8_1:17608015-17608034 Msa1182480:intron 60.0%
CTAACCCTCGGAAACCGGAG+GGG - chr8_1:17608022-17608041 None:intergenic 60.0%
CCTAACCCTCGGAAACCGGA+GGG - chr8_1:17608023-17608042 None:intergenic 60.0%
ACCTAACCCTCGGAAACCGG+AGG - chr8_1:17608024-17608043 None:intergenic 60.0%
TCTCTGGCCCCAACATACGG+TGG - chr8_1:17610760-17610779 None:intergenic 60.0%
! TAGCCTTGCGGAAGGCAAGC+AGG - chr8_1:17610954-17610973 None:intergenic 60.0%
CAGGAGGTTCTCGTGTGAGG+AGG - chr8_1:17611554-17611573 None:intergenic 60.0%
GCTCAGGAGGTTCTCGTGTG+AGG - chr8_1:17611557-17611576 None:intergenic 60.0%
CCCTCCGGTTTCCGAGGGTT+AGG + chr8_1:17608020-17608039 Msa1182480:intron 65.0%
GTTGGGGCCAGAGAGATCGC+TGG + chr8_1:17610766-17610785 Msa1182480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 17607389 17612610 17607389 ID=Msa1182480;Name=Msa1182480
chr8_1 mRNA 17607389 17612610 17607389 ID=Msa1182480-mRNA-1;Parent=Msa1182480;Name=Msa1182480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|1|1|13|264|384
chr8_1 exon 17607389 17607665 17607389 ID=Msa1182480-mRNA-1:exon:6575;Parent=Msa1182480-mRNA-1
chr8_1 exon 17607737 17607794 17607737 ID=Msa1182480-mRNA-1:exon:6576;Parent=Msa1182480-mRNA-1
chr8_1 exon 17607889 17607944 17607889 ID=Msa1182480-mRNA-1:exon:6577;Parent=Msa1182480-mRNA-1
chr8_1 exon 17608416 17608516 17608416 ID=Msa1182480-mRNA-1:exon:6578;Parent=Msa1182480-mRNA-1
chr8_1 exon 17608759 17608828 17608759 ID=Msa1182480-mRNA-1:exon:6579;Parent=Msa1182480-mRNA-1
chr8_1 exon 17608908 17608977 17608908 ID=Msa1182480-mRNA-1:exon:6580;Parent=Msa1182480-mRNA-1
chr8_1 exon 17609288 17609344 17609288 ID=Msa1182480-mRNA-1:exon:6581;Parent=Msa1182480-mRNA-1
chr8_1 exon 17609601 17609668 17609601 ID=Msa1182480-mRNA-1:exon:6582;Parent=Msa1182480-mRNA-1
chr8_1 exon 17609757 17609837 17609757 ID=Msa1182480-mRNA-1:exon:6583;Parent=Msa1182480-mRNA-1
chr8_1 exon 17610091 17610168 17610091 ID=Msa1182480-mRNA-1:exon:6584;Parent=Msa1182480-mRNA-1
chr8_1 exon 17610254 17610409 17610254 ID=Msa1182480-mRNA-1:exon:6585;Parent=Msa1182480-mRNA-1
chr8_1 exon 17610702 17610854 17610702 ID=Msa1182480-mRNA-1:exon:6586;Parent=Msa1182480-mRNA-1
chr8_1 exon 17612269 17612610 17612269 ID=Msa1182480-mRNA-1:exon:6587;Parent=Msa1182480-mRNA-1
chr8_1 five_prime_UTR 17607389 17607536 17607389 ID=Msa1182480-mRNA-1:five_prime_utr;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17607537 17607665 17607537 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17607737 17607794 17607737 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17607889 17607944 17607889 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17608416 17608516 17608416 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17608759 17608828 17608759 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17608908 17608977 17608908 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17609288 17609344 17609288 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17609601 17609668 17609601 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17609757 17609837 17609757 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17610091 17610168 17610091 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17610254 17610409 17610254 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17610702 17610854 17610702 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 CDS 17612269 17612346 17612269 ID=Msa1182480-mRNA-1:cds;Parent=Msa1182480-mRNA-1
chr8_1 three_prime_UTR 17612347 17612610 17612347 ID=Msa1182480-mRNA-1:three_prime_utr;Parent=Msa1182480-mRNA-1
Gene Sequence

>Msa1182480

ATGACCATTCAAGCCTTTCATGCTTCATCTTCTTGTTACTTCCATTCTCACCTTCATTCTTCTTCCACAAAGCGTTTCCATTCAAGGAAGACTCTGAAGCTGAACTGTAGTACTTCAAATGGAGACAAAGATGATTATCTTCTGGATGCTCCTATTTCTGTTGGTGATGGTTTCTCTTTCAGTGGAGGAAAATATTCAGATGGGCCTAATCCAAGTGATGAATGGTTTAAGCAAGGGAAAATGGTTAAAGCTTATTCAATTCCTGGAACTGGTGAAAAAGCAAAAGATCCAATTTTTGGGCTAACAATGGGTACTAGCTCTCAAGCTACCGGCGATCGTTTCAGATGGTTTTGTGTCGAAAGCGGAAGTGTTGATAATCCTTCAGTGATATTAATCCATGGTTTCCCTTCACAGGCATATTCTTATCGTAAGGTTCTTCCTGTACTCTCCAAGGACTATCGCGCCGTAACATTTGATTGGCTAGGATTTGGGTTTTCTGATAAGCCTCAACCCAAATATGGGTTTGATTACACCCTTGATGAATATGTGTCATCATTGGAGTCGCTTATTGATGAACTAGCTGTTACCAAAGTCTCACTTGTTGTCCAAGGATATTTTGCACCAGTTGTAGTTAAGTATGCCAGCAAACACCAGGAGAAGATTAACAACTTAATACTCATTAATCCACCTTTAACAGCCCAACATGCCAAACTTCCGCCTACATTATCCATATTCAGCAACTTTCTGCTAGGTGAAATATTTTCACAGGATCCATTGAGGGCCAGTGACAAAGCACTCACAAGCTGTGGACCCTACAAAATGAAAGAAGAAGATGCAATGGTCTATAGAAGACCCTATCTCATATCTGGCTCCTCAGGGTTTGCATTGAATGCAATTACCAGGACCATGAAGAAAGACCTCAAGAGGTATGTGGAGGATATGCAAACAATACTACAGGACAAAAGTTGGAACGTTCGAACCACCGTATGTTGGGGCCAGAGAGATCGCTGGTTGAGCTACGATGGAGTGGAAGATTTCTGCAAAGGTTCCAACCATAAGCTTATTGAAGTTCCAAAGGCTGGACATCATGCACAGGAAGATTGCGGCGAAGAACTTGGACAACTTATTTATGGAATAATAAGAAAAAAGAACTAA

Protein sequence

>Msa1182480

MTIQAFHASSSCYFHSHLHSSSTKRFHSRKTLKLNCSTSNGDKDDYLLDAPISVGDGFSFSGGKYSDGPNPSDEWFKQGKMVKAYSIPGTGEKAKDPIFGLTMGTSSQATGDRFRWFCVESGSVDNPSVILIHGFPSQAYSYRKVLPVLSKDYRAVTFDWLGFGFSDKPQPKYGFDYTLDEYVSSLESLIDELAVTKVSLVVQGYFAPVVVKYASKHQEKINNLILINPPLTAQHAKLPPTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYKMKEEDAMVYRRPYLISGSSGFALNAITRTMKKDLKRYVEDMQTILQDKSWNVRTTVCWGQRDRWLSYDGVEDFCKGSNHKLIEVPKAGHHAQEDCGEELGQLIYGIIRKKN*