AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056160 MtrunA17_Chr1g0148251 93.133 233 5 2 2 224 3 234 2.29e-156 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056160 AT5G19940.1 58.650 237 81 4 3 223 2 237 9.03e-94 275
Msa0056160 AT5G19940.2 56.502 223 80 4 3 209 2 223 3.69e-83 247

Find 61 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAATGCCCTTTAATATT+TGG 0.156574 1_2:-11655769 Msa0056160:CDS
AGATTATAATTATTTAATTT+AGG 0.186486 1_2:-11653251 Msa0056160:three_prime_UTR
AATTCCTTTCATGAAAATTC+TGG 0.226261 1_2:-11653481 Msa0056160:three_prime_UTR
GATTATAATTATTTAATTTA+GGG 0.246927 1_2:-11653250 Msa0056160:three_prime_UTR
GATTCACCTCCAAATATTAA+AGG 0.263064 1_2:+11655760 None:intergenic
CATGATCCTAACTTCAATTC+AGG 0.271381 1_2:+11653636 None:intergenic
AAAATCGCATTTACTGCTTT+AGG 0.285729 1_2:-11654677 Msa0056160:intron
GAAACGGATGTTAAATGATT+TGG 0.301672 1_2:+11658108 None:intergenic
CAAAACAAAGGAAATGGTTC+AGG 0.305881 1_2:-11654729 Msa0056160:CDS
GAAAGAACTTGTTCACTGTT+TGG 0.307124 1_2:-11658256 Msa0056160:five_prime_UTR
AAAGAACTTGTTCACTGTTT+GGG 0.342121 1_2:-11658255 Msa0056160:five_prime_UTR
GAAGCGCCTGAATTGAAGTT+AGG 0.366884 1_2:-11653642 Msa0056160:CDS
AGAGAAGCTACGAGATCATT+AGG 0.383848 1_2:+11658016 None:intergenic
TTGTCTCAAAATGCACTAGT+AGG 0.397074 1_2:-11653344 Msa0056160:three_prime_UTR
AGAGGTGGCTGAAGTAGTTC+AGG 0.402001 1_2:-11655821 Msa0056160:CDS
GGTGGGTATCGGAGTGCATT+GGG 0.413827 1_2:-11654764 Msa0056160:CDS
TTTCATCTACATAAGTGATT+CGG 0.422972 1_2:+11653577 None:intergenic
ATGTTAAATGATTTGGATGT+TGG 0.431771 1_2:+11658115 None:intergenic
GGATCATGGAAAGGACAATA+TGG 0.440706 1_2:-11653621 Msa0056160:CDS
CGTAGCTTCTCTTCTTTCAA+AGG 0.466795 1_2:-11658005 Msa0056160:intron
ATTCACCTCCAAATATTAAA+GGG 0.468719 1_2:+11655761 None:intergenic
ATTCTGGCAAGTTTGTAACT+TGG 0.473722 1_2:-11653465 Msa0056160:three_prime_UTR
AGGTGGGTATCGGAGTGCAT+TGG 0.479445 1_2:-11654765 Msa0056160:CDS
AATATTAAAGGGCATTTCAC+CGG 0.488802 1_2:+11655772 None:intergenic
GCCAAGGGGTAATGATGTCT+TGG 0.494819 1_2:+11653375 None:intergenic
CAGCCAACATCCCCTGGAGG+TGG 0.497585 1_2:-11654782 Msa0056160:CDS
TCTAACACGGATGTCCGAAC+AGG 0.503886 1_2:-11658040 Msa0056160:CDS
CATCCCCTGGAGGTGGGTAT+CGG 0.509376 1_2:-11654775 Msa0056160:CDS
AAATGCCCTTTAATATTTGG+AGG 0.511861 1_2:-11655766 Msa0056160:intron
TCCAAGACATCATTACCCCT+TGG 0.513026 1_2:-11653376 Msa0056160:three_prime_UTR
TGTTCACAGCCAACATCCCC+TGG 0.520663 1_2:-11654788 Msa0056160:CDS
TGAGACAAACTCTGCAGCCA+AGG 0.525005 1_2:+11653359 None:intergenic
AATCAGGTGGTGCAAACAGA+TGG 0.526942 1_2:-11655874 Msa0056160:intron
TCAAAGCTCTAGATACTGAA+TGG 0.532008 1_2:-11653680 Msa0056160:CDS
CGAGATCATTAGGACCTGTT+CGG 0.533285 1_2:+11658026 None:intergenic
GCACTCCGATACCCACCTCC+AGG 0.533764 1_2:+11654770 None:intergenic
ATCCGTGTTAGAAATAGAAA+CGG 0.544064 1_2:+11658051 None:intergenic
CTGAATTGAAGTTAGGATCA+TGG 0.550366 1_2:-11653635 Msa0056160:CDS
TACCCACCTCCAGGGGATGT+TGG 0.554072 1_2:+11654779 None:intergenic
GTACAGTGAGCACACCCTCA+TGG 0.559008 1_2:-11658215 Msa0056160:exon
TTCCGTTTCTATTTCTAACA+CGG 0.559401 1_2:-11658053 Msa0056160:CDS
GAGACAAACTCTGCAGCCAA+GGG 0.565745 1_2:+11653360 None:intergenic
TGTCTCAAAATGCACTAGTA+GGG 0.574070 1_2:-11653343 Msa0056160:three_prime_UTR
AAGCATAAGCTGCAGCCATG+AGG 0.581398 1_2:+11658200 None:intergenic
CACTCCGATACCCACCTCCA+GGG 0.587739 1_2:+11654771 None:intergenic
AGCATAAGCTGCAGCCATGA+GGG 0.589302 1_2:+11658201 None:intergenic
TATTTAATTTAGGGAATGCG+AGG 0.615461 1_2:-11653241 Msa0056160:three_prime_UTR
AGGTTAGGATTGGGATCCAG+AGG 0.617399 1_2:-11653549 Msa0056160:CDS
AGCCAACATCCCCTGGAGGT+GGG 0.619542 1_2:-11654781 Msa0056160:CDS
TTGCTTTCCAGAGTGGGATG+TGG 0.621177 1_2:-11654816 Msa0056160:intron
CAGGTGGTGCAAACAGATGG+AGG 0.622209 1_2:-11655871 Msa0056160:CDS
GTTAGAAATAGAAACGGAAG+CGG 0.641989 1_2:+11658057 None:intergenic
GAAGTATTGTGTGAAAGAGC+CGG 0.642144 1_2:-11655791 Msa0056160:CDS
TTGAAGTTAGGATCATGGAA+AGG 0.658607 1_2:-11653630 Msa0056160:CDS
AAAGGAAGAACACAAAGAGG+TGG 0.660750 1_2:-11655836 Msa0056160:CDS
GCTATATTATAGTTACAAAG+TGG 0.667027 1_2:-11653319 Msa0056160:three_prime_UTR
GCAAAAGGAAGAACACAAAG+AGG 0.672287 1_2:-11655839 Msa0056160:CDS
ACTCCGATACCCACCTCCAG+GGG 0.688603 1_2:+11654772 None:intergenic
TCATGGAAAGGACAATATGG+AGG 0.694503 1_2:-11653618 Msa0056160:CDS
AGACAAACTCTGCAGCCAAG+GGG 0.701069 1_2:+11653361 None:intergenic
TCACAGCCAACATCCCCTGG+AGG 0.744676 1_2:-11654785 Msa0056160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAAAATAAAAAA+AGG + chr1_2:11657579-11657598 None:intergenic 0.0%
!! GAAAGTTATTATTATTATTA+TGG + chr1_2:11653298-11653317 None:intergenic 10.0%
!!! ATATTAACTAATTTTCTTAA+GGG + chr1_2:11654065-11654084 None:intergenic 10.0%
!! ATTAAATTAATCATCAAAAT+AGG - chr1_2:11654137-11654156 Msa0056160:intron 10.0%
!!! TTTTTATTTTACTTTACTAT+TGG - chr1_2:11654206-11654225 Msa0056160:intron 10.0%
!! AAATATTAAATGTAATGAAA+TGG + chr1_2:11655476-11655495 None:intergenic 10.0%
!! AATAAACTAAAAATAGTTTA+TGG - chr1_2:11655911-11655930 Msa0056160:intron 10.0%
!! TAATTTCTTTACAATTAAAA+AGG - chr1_2:11656265-11656284 Msa0056160:intron 10.0%
!!! TACTGTTTTTTAAATTATTT+TGG - chr1_2:11656518-11656537 Msa0056160:intron 10.0%
!!! ACTGTTTTTTAAATTATTTT+GGG - chr1_2:11656519-11656538 Msa0056160:intron 10.0%
!!! GATTTTAAGTATTTAATTAT+AGG - chr1_2:11657478-11657497 Msa0056160:intron 10.0%
!! AAGGAAATTATTACATTAAA+AGG + chr1_2:11653999-11654018 None:intergenic 15.0%
!!! AATGTAATAATTTCCTTTTT+TGG - chr1_2:11654002-11654021 Msa0056160:intron 15.0%
!!! CATATTAACTAATTTTCTTA+AGG + chr1_2:11654066-11654085 None:intergenic 15.0%
!!! TGATGTTTTAGAAAAATAAT+TGG - chr1_2:11654915-11654934 Msa0056160:intron 15.0%
!!! GATGTTTTAGAAAAATAATT+GGG - chr1_2:11654916-11654935 Msa0056160:intron 15.0%
!!! ATGTTTTAGAAAAATAATTG+GGG - chr1_2:11654917-11654936 Msa0056160:intron 15.0%
!!! AAATAAAGATTTAAAAGTAC+AGG + chr1_2:11655510-11655529 None:intergenic 15.0%
!!! AAATATTACCTTTTATTTGT+TGG - chr1_2:11656099-11656118 Msa0056160:intron 15.0%
!!! CTGTTTTTTAAATTATTTTG+GGG - chr1_2:11656520-11656539 Msa0056160:intron 15.0%
!!! ATTTCTGTTTTTTTTAATCA+AGG - chr1_2:11656953-11656972 Msa0056160:intron 15.0%
!!! TTGTATGAATTTTATACACA+CGG - chr1_2:11653532-11653551 Msa0056160:CDS 20.0%
!! AAGTCTAAGAATATTAGTAA+TGG - chr1_2:11653724-11653743 Msa0056160:intron 20.0%
!!! TTCCTAACATTTTCTTTTAT+AGG + chr1_2:11654593-11654612 None:intergenic 20.0%
!! ACTAAAATATTGTTTGTGAT+GGG - chr1_2:11654636-11654655 Msa0056160:intron 20.0%
!! AATATTATACATTGTCAACT+AGG + chr1_2:11655028-11655047 None:intergenic 20.0%
!! TGTATATCAGTAGAAAAATA+CGG + chr1_2:11655068-11655087 None:intergenic 20.0%
!! ATTAAATGTAATGAAATGGA+AGG + chr1_2:11655472-11655491 None:intergenic 20.0%
!!! GTAAAATTCAATTTTCAGTA+TGG + chr1_2:11655533-11655552 None:intergenic 20.0%
!!! TTGAATTTTACCTTTTAATC+AGG - chr1_2:11655542-11655561 Msa0056160:intron 20.0%
!!! TAAATTTTAACACAATCTCA+AGG + chr1_2:11655727-11655746 None:intergenic 20.0%
!! ACTTTATTAAATATGCAGAT+AGG + chr1_2:11655763-11655782 None:intergenic 20.0%
!! TTTATACATAAGCACTTATA+TGG + chr1_2:11655806-11655825 None:intergenic 20.0%
!! AATAGAAATTTGAAAAACAC+GGG + chr1_2:11656062-11656081 None:intergenic 20.0%
!! GAATAGAAATTTGAAAAACA+CGG + chr1_2:11656063-11656082 None:intergenic 20.0%
!! AATAACAATTAACAACAAAG+TGG - chr1_2:11656153-11656172 Msa0056160:intron 20.0%
!! TTACAATTAAAAAGGACATT+AGG - chr1_2:11656273-11656292 Msa0056160:intron 20.0%
!! TACAATTAAAAAGGACATTA+GGG - chr1_2:11656274-11656293 Msa0056160:intron 20.0%
!! ACCAATTAAACAATAAAATG+TGG + chr1_2:11656394-11656413 None:intergenic 20.0%
!!! TTTTTTCAAAACAAAGGAAA+TGG - chr1_2:11656697-11656716 Msa0056160:intron 20.0%
!!! TGTTTTTTTTAATCAAGGTT+GGG - chr1_2:11656958-11656977 Msa0056160:intron 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr1_2:11657141-11657160 Msa0056160:intron 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG + chr1_2:11657141-11657160 None:intergenic 20.0%
!!! ACAAACATTTTACAAATTGA+AGG - chr1_2:11657541-11657560 Msa0056160:intron 20.0%
!!! TTTTTCGAAGAATATGAATT+TGG - chr1_2:11657917-11657936 Msa0056160:intron 20.0%
!! ATGTTAAATGATTTGGATGT+TGG + chr1_2:11653320-11653339 None:intergenic 25.0%
! TGATTATTCTTCTCTTTCAA+CGG - chr1_2:11653556-11653575 Msa0056160:CDS 25.0%
!!! ATATGCAAGTTGATTATCAA+TGG + chr1_2:11653679-11653698 None:intergenic 25.0%
! AATGTTAAAGTTGACTAAAG+AGG - chr1_2:11653770-11653789 Msa0056160:intron 25.0%
! GACCTATAAAAGAAAATGTT+AGG - chr1_2:11654588-11654607 Msa0056160:intron 25.0%
! AGATTTAGAAATTAATGAGC+TGG - chr1_2:11654613-11654632 Msa0056160:intron 25.0%
! GACTAAAATATTGTTTGTGA+TGG - chr1_2:11654635-11654654 Msa0056160:intron 25.0%
!! CACGTTATTTATTTCTTACA+CGG - chr1_2:11654875-11654894 Msa0056160:intron 25.0%
! ATTATCATGTAAGATGTTGT+TGG - chr1_2:11655097-11655116 Msa0056160:intron 25.0%
! TATATAGTAGTACTAAGCAA+TGG - chr1_2:11655274-11655293 Msa0056160:intron 25.0%
!! AATTTTACCTTTTAATCAGG+TGG - chr1_2:11655545-11655564 Msa0056160:intron 25.0%
! ATTCACCTCCAAATATTAAA+GGG + chr1_2:11655674-11655693 None:intergenic 25.0%
!!! TTATTTTGGTCTGTTTAGAT+TGG + chr1_2:11656014-11656033 None:intergenic 25.0%
! GAAAAATGCCAACAAATAAA+AGG + chr1_2:11656110-11656129 None:intergenic 25.0%
!! GCCACATTTTATTGTTTAAT+TGG - chr1_2:11656390-11656409 Msa0056160:intron 25.0%
!!! CAGAGTTTTTTTCAAAACAA+AGG - chr1_2:11656691-11656710 Msa0056160:intron 25.0%
!!! ATTTACTGCTTTAGGTTTTT+TGG - chr1_2:11656763-11656782 Msa0056160:intron 25.0%
! ATCATGTCAAATATGTATGA+TGG - chr1_2:11656823-11656842 Msa0056160:intron 25.0%
!!! CTGTTTTTTTTAATCAAGGT+TGG - chr1_2:11656957-11656976 Msa0056160:intron 25.0%
! GTTAGTTAGTAGTTAGTAAA+TGG - chr1_2:11657082-11657101 Msa0056160:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr1_2:11657240-11657259 None:intergenic 25.0%
! CATCCATTAAATGATGTATT+TGG - chr1_2:11657166-11657185 Msa0056160:intron 25.0%
! TGACCAAATACATCATTTAA+TGG + chr1_2:11657172-11657191 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr1_2:11657240-11657259 Msa0056160:intron 25.0%
! AGAATGTTATGTTTACATCA+AGG - chr1_2:11657281-11657300 Msa0056160:intron 25.0%
! GAATGTTATGTTTACATCAA+GGG - chr1_2:11657282-11657301 Msa0056160:intron 25.0%
! AATGTTATGTTTACATCAAG+GGG - chr1_2:11657283-11657302 Msa0056160:intron 25.0%
! AATTGTTACATGTTACTCTT+TGG - chr1_2:11657400-11657419 Msa0056160:intron 25.0%
! TTGAGTCTTAACTAACAAAT+TGG - chr1_2:11657431-11657450 Msa0056160:intron 25.0%
! CTTACTTGATGTATGAAAAT+GGG - chr1_2:11657717-11657736 Msa0056160:intron 25.0%
! TTTCATCTACATAAGTGATT+CGG + chr1_2:11657858-11657877 None:intergenic 25.0%
! CTTATGTAGATGAAAAAATC+AGG - chr1_2:11657863-11657882 Msa0056160:intron 25.0%
! AATTCCTTTCATGAAAATTC+TGG - chr1_2:11657951-11657970 Msa0056160:intron 25.0%
! GCTATATTATAGTTACAAAG+TGG - chr1_2:11658113-11658132 Msa0056160:CDS 25.0%
! AAAGAACTTGTTCACTGTTT+GGG - chr1_2:11653177-11653196 Msa0056160:three_prime_UTR 30.0%
GAAACGGATGTTAAATGATT+TGG + chr1_2:11653327-11653346 None:intergenic 30.0%
!!! AAACGCATAAGCTGTTTTTA+CGG + chr1_2:11653355-11653374 None:intergenic 30.0%
!! TTCCGTTTCTATTTCTAACA+CGG - chr1_2:11653379-11653398 Msa0056160:three_prime_UTR 30.0%
ATCCGTGTTAGAAATAGAAA+CGG + chr1_2:11653384-11653403 None:intergenic 30.0%
TTGTTGATCAGCTATTATCA+CGG + chr1_2:11653822-11653841 None:intergenic 30.0%
AAAACACCCAATTAAGAGAA+GGG - chr1_2:11653840-11653859 Msa0056160:intron 30.0%
CTTTGACCAAAAAAAGAGAA+GGG - chr1_2:11653868-11653887 Msa0056160:intron 30.0%
!!! TAATTTCCTTTTTTGGCATC+CGG - chr1_2:11654009-11654028 Msa0056160:intron 30.0%
AATCATCAAAATAGGTGAAG+TGG - chr1_2:11654145-11654164 Msa0056160:intron 30.0%
ATCATCAAAATAGGTGAAGT+GGG - chr1_2:11654146-11654165 Msa0056160:intron 30.0%
TAAGACCAATGATGTTCTAT+GGG - chr1_2:11654300-11654319 Msa0056160:intron 30.0%
AATGAGAATACTTGAGAGTT+GGG - chr1_2:11654432-11654451 Msa0056160:intron 30.0%
CTCCTTACTACAAAATCTAT+GGG + chr1_2:11654524-11654543 None:intergenic 30.0%
TCTCCTTACTACAAAATCTA+TGG + chr1_2:11654525-11654544 None:intergenic 30.0%
! AACTTGGTTGTTGTTACTAT+TGG - chr1_2:11654708-11654727 Msa0056160:CDS 30.0%
TGTTGTTACTATTGGCATAA+TGG - chr1_2:11654716-11654735 Msa0056160:CDS 30.0%
TCAACCAATGCACAAATAAA+CGG - chr1_2:11654739-11654758 Msa0056160:CDS 30.0%
TGGGGAATCATGAAATAAAA+TGG - chr1_2:11654935-11654954 Msa0056160:intron 30.0%
TCAACTAGGTCATATATTGT+GGG + chr1_2:11655014-11655033 None:intergenic 30.0%
TCAACTGTGTCAAGTAATAT+GGG - chr1_2:11655226-11655245 Msa0056160:intron 30.0%
!! AATATTAAAGGGCATTTCAC+CGG + chr1_2:11655663-11655682 None:intergenic 30.0%
GTGAAATGCCCTTTAATATT+TGG - chr1_2:11655663-11655682 Msa0056160:intron 30.0%
AAATGCCCTTTAATATTTGG+AGG - chr1_2:11655666-11655685 Msa0056160:intron 30.0%
GATTCACCTCCAAATATTAA+AGG + chr1_2:11655675-11655694 None:intergenic 30.0%
TATTAAATATGCAGATAGGC+TGG + chr1_2:11655759-11655778 None:intergenic 30.0%
!!! GCTGTTTTTATAAGCAATTC+TGG - chr1_2:11655876-11655895 Msa0056160:intron 30.0%
AGACTATTTGATAGAGCTTA+CGG + chr1_2:11655955-11655974 None:intergenic 30.0%
!!! GTTGGCATTTTTCAAGAATT+TGG - chr1_2:11656117-11656136 Msa0056160:intron 30.0%
! ATTGCACATTGTTTTCAACT+TGG + chr1_2:11656181-11656200 None:intergenic 30.0%
! TTTTGTCAGTATGTTGAACA+AGG + chr1_2:11656596-11656615 None:intergenic 30.0%
!! ATTTTGTTTCTCACAACATC+AGG + chr1_2:11656740-11656759 None:intergenic 30.0%
AAAATCGCATTTACTGCTTT+AGG - chr1_2:11656755-11656774 Msa0056160:intron 30.0%
AGTCTTAACTAACAAATTGG+AGG - chr1_2:11657434-11657453 Msa0056160:intron 30.0%
GCTTACTTGATGTATGAAAA+TGG - chr1_2:11657716-11657735 Msa0056160:intron 30.0%
GTAGATGAAAAAATCAGGTT+AGG - chr1_2:11657868-11657887 Msa0056160:intron 30.0%
TGAAAAAATCAGGTTAGGAT+TGG - chr1_2:11657873-11657892 Msa0056160:intron 30.0%
GAAAAAATCAGGTTAGGATT+GGG - chr1_2:11657874-11657893 Msa0056160:intron 30.0%
! TATTTAATTTAGGGAATGCG+AGG - chr1_2:11658191-11658210 Msa0056160:CDS 30.0%
! GAAAGAACTTGTTCACTGTT+TGG - chr1_2:11653176-11653195 Msa0056160:three_prime_UTR 35.0%
GTTAGAAATAGAAACGGAAG+CGG + chr1_2:11653378-11653397 None:intergenic 35.0%
! CGGTGTTGAACATTAATACA+AGG + chr1_2:11653802-11653821 None:intergenic 35.0%
CAAAACACCCAATTAAGAGA+AGG - chr1_2:11653839-11653858 Msa0056160:intron 35.0%
GCATTTCCCTTCTCTTAATT+GGG + chr1_2:11653849-11653868 None:intergenic 35.0%
AGCATTTCCCTTCTCTTAAT+TGG + chr1_2:11653850-11653869 None:intergenic 35.0%
GCTTTGACCAAAAAAAGAGA+AGG - chr1_2:11653867-11653886 Msa0056160:intron 35.0%
!!! GCATTTCCCTTCTCTTTTTT+TGG + chr1_2:11653877-11653896 None:intergenic 35.0%
CTGGTTAAGGATGTTGAAAA+AGG - chr1_2:11653909-11653928 Msa0056160:intron 35.0%
TAATTGATTATGCCAGACTG+TGG - chr1_2:11654177-11654196 Msa0056160:intron 35.0%
TAAAAATTCACTCCACAGTC+TGG + chr1_2:11654192-11654211 None:intergenic 35.0%
AAAATACTGCTCAAGTCGAA+GGG - chr1_2:11654258-11654277 Msa0056160:intron 35.0%
GTAAGACCAATGATGTTCTA+TGG - chr1_2:11654299-11654318 Msa0056160:intron 35.0%
TCTATCCCATAGAACATCAT+TGG + chr1_2:11654308-11654327 None:intergenic 35.0%
!!! CGCTTATTTTATTCTCGTGT+TGG + chr1_2:11654349-11654368 None:intergenic 35.0%
GAATGAGAATACTTGAGAGT+TGG - chr1_2:11654431-11654450 Msa0056160:intron 35.0%
ATGAGAATACTTGAGAGTTG+GGG - chr1_2:11654433-11654452 Msa0056160:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr1_2:11654457-11654476 Msa0056160:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr1_2:11654460-11654479 Msa0056160:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr1_2:11654464-11654483 None:intergenic 35.0%
!! AAAGATGGTGGAAAATAGAC+TGG - chr1_2:11654472-11654491 Msa0056160:intron 35.0%
!! AAGATGGTGGAAAATAGACT+GGG - chr1_2:11654473-11654492 Msa0056160:intron 35.0%
AAAATAGACTGGGATGGTTT+GGG - chr1_2:11654483-11654502 Msa0056160:intron 35.0%
! GACCCATAGATTTTGTAGTA+AGG - chr1_2:11654519-11654538 Msa0056160:intron 35.0%
! AGTAAGGAGAGTTGATTAGA+TGG - chr1_2:11654535-11654554 Msa0056160:intron 35.0%
GAGAATAGTTAGATCACTAG+AGG - chr1_2:11654557-11654576 Msa0056160:intron 35.0%
!!! AAGTTTTTTCCCACTAAGTG+GGG + chr1_2:11654693-11654712 None:intergenic 35.0%
!!! CAAGTTTTTTCCCACTAAGT+GGG + chr1_2:11654694-11654713 None:intergenic 35.0%
CAACCAATGCACAAATAAAC+GGG - chr1_2:11654740-11654759 Msa0056160:CDS 35.0%
AACCAATGCACAAATAAACG+GGG - chr1_2:11654741-11654760 Msa0056160:CDS 35.0%
! AACATCAGAGTATCCAAACA+AGG + chr1_2:11654902-11654921 None:intergenic 35.0%
GTCAACTAGGTCATATATTG+TGG + chr1_2:11655015-11655034 None:intergenic 35.0%
GTCAACTGTGTCAAGTAATA+TGG - chr1_2:11655225-11655244 Msa0056160:intron 35.0%
! TTTGAACAAGAGCACAAGAA+TGG - chr1_2:11655312-11655331 Msa0056160:intron 35.0%
!! GTTAGTCTTGCTATAAAGTC+TGG + chr1_2:11655391-11655410 None:intergenic 35.0%
GCACGAATAAATGCATAATG+TGG + chr1_2:11655697-11655716 None:intergenic 35.0%
!! AACAAATCAAAAGCACTACG+CGG + chr1_2:11656038-11656057 None:intergenic 35.0%
TCAAGAATTTGGCAATGAAC+AGG - chr1_2:11656128-11656147 Msa0056160:intron 35.0%
TTTATCCATAGTGTAGTGCT+TGG - chr1_2:11656202-11656221 Msa0056160:intron 35.0%
TTATCCATAGTGTAGTGCTT+GGG - chr1_2:11656203-11656222 Msa0056160:intron 35.0%
! TGTCATTAAGCACTGTTATC+TGG - chr1_2:11656355-11656374 Msa0056160:intron 35.0%
ACATCCTGTGAATAGTTACT+TGG - chr1_2:11656430-11656449 Msa0056160:intron 35.0%
ACAAAATTGCTTTCCAGAGT+GGG - chr1_2:11656610-11656629 Msa0056160:intron 35.0%
CAAAACAAAGGAAATGGTTC+AGG - chr1_2:11656703-11656722 Msa0056160:intron 35.0%
!!! ACTGCTTTAGGTTTTTTGGA+TGG - chr1_2:11656767-11656786 Msa0056160:intron 35.0%
!!! TTTAGGTTTTTTGGATGGAG+AGG - chr1_2:11656772-11656791 Msa0056160:intron 35.0%
TCAAAGATACGAATTACGGT+GGG + chr1_2:11656852-11656871 None:intergenic 35.0%
! ATTGATGATCAGTCCCATAA+CGG + chr1_2:11656923-11656942 None:intergenic 35.0%
ACTGATCATCAATCATTAGC+TGG - chr1_2:11656930-11656949 Msa0056160:intron 35.0%
TTAATAGTATGTACTCCCTC+CGG - chr1_2:11657109-11657128 Msa0056160:intron 35.0%
!! CAATTTCTGAGACGAAAAAG+AGG + chr1_2:11657385-11657404 None:intergenic 35.0%
TTGAAATGTTAGCCAACAGA+AGG - chr1_2:11657508-11657527 Msa0056160:intron 35.0%
TGAAATGTTAGCCAACAGAA+GGG - chr1_2:11657509-11657528 Msa0056160:intron 35.0%
!! AGAGACTAACTTGTTCTTGT+TGG - chr1_2:11657602-11657621 Msa0056160:intron 35.0%
! GCTTTTCTATGGATAGAGAA+AGG + chr1_2:11657637-11657656 None:intergenic 35.0%
ATCAAGTAAGCACAGAAGTT+CGG + chr1_2:11657707-11657726 None:intergenic 35.0%
GATGTATGAAAATGGGAAAC+AGG - chr1_2:11657724-11657743 Msa0056160:intron 35.0%
!! TCAAAGCTCTAGATACTGAA+TGG - chr1_2:11657752-11657771 Msa0056160:intron 35.0%
CATGATCCTAACTTCAATTC+AGG + chr1_2:11657799-11657818 None:intergenic 35.0%
CTGAATTGAAGTTAGGATCA+TGG - chr1_2:11657797-11657816 Msa0056160:intron 35.0%
TTGAAGTTAGGATCATGGAA+AGG - chr1_2:11657802-11657821 Msa0056160:intron 35.0%
AAAAACAAACAGTGAACCTC+TGG + chr1_2:11657902-11657921 None:intergenic 35.0%
! CTTGCCAGAATTTTCATGAA+AGG + chr1_2:11657958-11657977 None:intergenic 35.0%
ATTCTGGCAAGTTTGTAACT+TGG - chr1_2:11657967-11657986 Msa0056160:intron 35.0%
TTGTCTCAAAATGCACTAGT+AGG - chr1_2:11658088-11658107 Msa0056160:CDS 35.0%
TGTCTCAAAATGCACTAGTA+GGG - chr1_2:11658089-11658108 Msa0056160:CDS 35.0%
!!! ATAAGCTGTTTTTACGGCGA+GGG + chr1_2:11653349-11653368 None:intergenic 40.0%
AGAGAAGCTACGAGATCATT+AGG + chr1_2:11653419-11653438 None:intergenic 40.0%
CGTAGCTTCTCTTCTTTCAA+AGG - chr1_2:11653427-11653446 Msa0056160:three_prime_UTR 40.0%
TGTATCACCAAAAACACCAG+AGG + chr1_2:11654239-11654258 None:intergenic 40.0%
CAAAATACTGCTCAAGTCGA+AGG - chr1_2:11654257-11654276 Msa0056160:intron 40.0%
!! ATCATTGGTCTTACTCTGTC+CGG + chr1_2:11654293-11654312 None:intergenic 40.0%
TGTTCTATGGGATAGAGTGT+TGG - chr1_2:11654312-11654331 Msa0056160:intron 40.0%
! GTTCTATGGGATAGAGTGTT+GGG - chr1_2:11654313-11654332 Msa0056160:intron 40.0%
CAAAGACGAAAATGTTGCGT+TGG - chr1_2:11654372-11654391 Msa0056160:intron 40.0%
GAAAATAGACTGGGATGGTT+TGG - chr1_2:11654482-11654501 Msa0056160:intron 40.0%
AGTTAGATCACTAGAGGTAG+AGG - chr1_2:11654563-11654582 Msa0056160:intron 40.0%
!!! CCAAGTTTTTTCCCACTAAG+TGG + chr1_2:11654695-11654714 None:intergenic 40.0%
CCACTTAGTGGGAAAAAACT+TGG - chr1_2:11654692-11654711 Msa0056160:CDS 40.0%
AATGCACAAATAAACGGGGA+GGG - chr1_2:11654745-11654764 Msa0056160:CDS 40.0%
TAGTAGTGGTTAGCACTACT+GGG + chr1_2:11654816-11654835 None:intergenic 40.0%
TGCTAACCACTACTACAACA+CGG - chr1_2:11654821-11654840 Msa0056160:intron 40.0%
TTTCTTACACGGTCCTTGTT+TGG - chr1_2:11654886-11654905 Msa0056160:intron 40.0%
CTAGGTCATATATTGTGGGA+CGG + chr1_2:11655010-11655029 None:intergenic 40.0%
CTGTGTCAAGTAATATGGGA+CGG - chr1_2:11655230-11655249 Msa0056160:intron 40.0%
GTTTGCACCACCTGATTAAA+AGG + chr1_2:11655555-11655574 None:intergenic 40.0%
! TGGAGGAGTTTTACTGCAAA+AGG - chr1_2:11655578-11655597 Msa0056160:intron 40.0%
GCAAAAGGAAGAACACAAAG+AGG - chr1_2:11655593-11655612 Msa0056160:intron 40.0%
AAAGGAAGAACACAAAGAGG+TGG - chr1_2:11655596-11655615 Msa0056160:intron 40.0%
!! GAAGTATTGTGTGAAAGAGC+CGG - chr1_2:11655641-11655660 Msa0056160:intron 40.0%
AATATGCAGATAGGCTGGTA+GGG + chr1_2:11655754-11655773 None:intergenic 40.0%
AAATATGCAGATAGGCTGGT+AGG + chr1_2:11655755-11655774 None:intergenic 40.0%
ACGTCCTTATGCTAGTAGAT+AGG - chr1_2:11655978-11655997 Msa0056160:intron 40.0%
TGAGCCTATCTACTAGCATA+AGG + chr1_2:11655985-11656004 None:intergenic 40.0%
! AAGCACTACGCGGTTTATTT+TGG + chr1_2:11656028-11656047 None:intergenic 40.0%
TTTACCCAAGCACTACACTA+TGG + chr1_2:11656210-11656229 None:intergenic 40.0%
TAGGCCAAGTAACTATTCAC+AGG + chr1_2:11656437-11656456 None:intergenic 40.0%
TTACTTGGCCTAGTAATCTG+TGG - chr1_2:11656445-11656464 Msa0056160:intron 40.0%
! GCCTAGTAATCTGTGGTTTT+TGG - chr1_2:11656452-11656471 Msa0056160:intron 40.0%
GCCAAAAACCACAGATTACT+AGG + chr1_2:11656456-11656475 None:intergenic 40.0%
GACAAAATTGCTTTCCAGAG+TGG - chr1_2:11656609-11656628 Msa0056160:intron 40.0%
GATGGAGAGGTTTCTCTAAA+AGG - chr1_2:11656785-11656804 Msa0056160:intron 40.0%
GTCAAAGATACGAATTACGG+TGG + chr1_2:11656853-11656872 None:intergenic 40.0%
GGGGTCAAAGATACGAATTA+CGG + chr1_2:11656856-11656875 None:intergenic 40.0%
! TTGATGATCAGTCCCATAAC+GGG + chr1_2:11656922-11656941 None:intergenic 40.0%
! AAACTCGGGTTCTTTTCCTA+GGG - chr1_2:11657011-11657030 Msa0056160:intron 40.0%
TCTCCAACCAACATGTTGTT+GGG + chr1_2:11657058-11657077 None:intergenic 40.0%
ATCTCCAACCAACATGTTGT+TGG + chr1_2:11657059-11657078 None:intergenic 40.0%
! CAACATGTTGGTTGGAGATA+TGG - chr1_2:11657060-11657079 Msa0056160:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr1_2:11657244-11657263 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1_2:11657243-11657262 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1_2:11657243-11657262 Msa0056160:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr1_2:11657244-11657263 Msa0056160:intron 40.0%
TCATTACATAGTACTCCCTC+CGG + chr1_2:11657262-11657281 None:intergenic 40.0%
!! GTCATTTTAGTCCCTTCTGT+TGG + chr1_2:11657523-11657542 None:intergenic 40.0%
GGATCATGGAAAGGACAATA+TGG - chr1_2:11657811-11657830 Msa0056160:intron 40.0%
TCATGGAAAGGACAATATGG+AGG - chr1_2:11657814-11657833 Msa0056160:intron 40.0%
!! TGTTTTTACGGCGAGGGAAA+CGG + chr1_2:11653343-11653362 None:intergenic 45.0%
!!! CATAAGCTGTTTTTACGGCG+AGG + chr1_2:11653350-11653369 None:intergenic 45.0%
CGAGATCATTAGGACCTGTT+CGG + chr1_2:11653409-11653428 None:intergenic 45.0%
AGAGAAGGGAAATGCTAACC+TGG - chr1_2:11653882-11653901 Msa0056160:intron 45.0%
TACTATTGGCGTAATGCCTC+TGG - chr1_2:11654220-11654239 Msa0056160:intron 45.0%
! CGTAATGCCTCTGGTGTTTT+TGG - chr1_2:11654229-11654248 Msa0056160:intron 45.0%
! AGTCGAAGGGTCAATTTTGC+CGG - chr1_2:11654271-11654290 Msa0056160:intron 45.0%
TGGTGGAAAATAGACTGGGA+TGG - chr1_2:11654477-11654496 Msa0056160:intron 45.0%
ACTAAGTGGGGTTGACTACA+TGG + chr1_2:11654681-11654700 None:intergenic 45.0%
ATGTAGTCAACCCCACTTAG+TGG - chr1_2:11654680-11654699 Msa0056160:CDS 45.0%
TGTAGTCAACCCCACTTAGT+GGG - chr1_2:11654681-11654700 Msa0056160:CDS 45.0%
CTCCCCGTTTATTTGTGCAT+TGG + chr1_2:11654746-11654765 None:intergenic 45.0%
CAATGCACAAATAAACGGGG+AGG - chr1_2:11654744-11654763 Msa0056160:CDS 45.0%
ATGCACAAATAAACGGGGAG+GGG - chr1_2:11654746-11654765 Msa0056160:CDS 45.0%
GTAGTAGTGGTTAGCACTAC+TGG + chr1_2:11654817-11654836 None:intergenic 45.0%
GCTAACCACTACTACAACAC+GGG - chr1_2:11654822-11654841 Msa0056160:intron 45.0%
CTAACCACTACTACAACACG+GGG - chr1_2:11654823-11654842 Msa0056160:intron 45.0%
TAACCACTACTACAACACGG+GGG - chr1_2:11654824-11654843 Msa0056160:intron 45.0%
GTCATATATTGTGGGACGGA+GGG + chr1_2:11655006-11655025 None:intergenic 45.0%
TGTCAAGTAATATGGGACGG+AGG - chr1_2:11655233-11655252 Msa0056160:intron 45.0%
GTCAAGTAATATGGGACGGA+GGG - chr1_2:11655234-11655253 Msa0056160:intron 45.0%
AATCAGGTGGTGCAAACAGA+TGG - chr1_2:11655558-11655577 Msa0056160:intron 45.0%
ATATGCAGATAGGCTGGTAG+GGG + chr1_2:11655753-11655772 None:intergenic 45.0%
TACATCATGCAGAGCATGTG+TGG + chr1_2:11656305-11656324 None:intergenic 45.0%
TCGTATCTTTGACCCCCATT+AGG - chr1_2:11656860-11656879 Msa0056160:intron 45.0%
! ACTGCTAGAGTCGTCCTTTT+GGG + chr1_2:11656990-11657009 None:intergenic 45.0%
ACGACTCTAGCAGTCAAACT+CGG - chr1_2:11656996-11657015 Msa0056160:intron 45.0%
! CAAACTCGGGTTCTTTTCCT+AGG - chr1_2:11657010-11657029 Msa0056160:intron 45.0%
! AACTCGGGTTCTTTTCCTAG+GGG - chr1_2:11657012-11657031 Msa0056160:intron 45.0%
TGACAATATGACTCTCCCCT+AGG + chr1_2:11657030-11657049 None:intergenic 45.0%
CAACTCTCCCAACAACATGT+TGG - chr1_2:11657048-11657067 Msa0056160:intron 45.0%
TCTCCCAACAACATGTTGGT+TGG - chr1_2:11657052-11657071 Msa0056160:intron 45.0%
! GAAGCGCCTGAATTGAAGTT+AGG - chr1_2:11657790-11657809 Msa0056160:intron 45.0%
TCCAAGACATCATTACCCCT+TGG - chr1_2:11658056-11658075 Msa0056160:CDS 45.0%
!!! ATTTTAAGTATTTAATTATA+GGG - chr1_2:11657479-11657498 Msa0056160:intron 5.0%
!!! AGATTATAATTATTTAATTT+AGG - chr1_2:11658181-11658200 Msa0056160:CDS 5.0%
!!! GATTATAATTATTTAATTTA+GGG - chr1_2:11658182-11658201 Msa0056160:CDS 5.0%
AGCATAAGCTGCAGCCATGA+GGG + chr1_2:11653234-11653253 None:intergenic 50.0%
AAGCATAAGCTGCAGCCATG+AGG + chr1_2:11653235-11653254 None:intergenic 50.0%
TCTAACACGGATGTCCGAAC+AGG - chr1_2:11653392-11653411 Msa0056160:three_prime_UTR 50.0%
GAAATGCTAACCTGGAGCAC+TGG - chr1_2:11653890-11653909 Msa0056160:intron 50.0%
!! CTAACCTGGAGCACTGGTTA+AGG - chr1_2:11653896-11653915 Msa0056160:intron 50.0%
ACATCCTTAACCAGTGCTCC+AGG + chr1_2:11653903-11653922 None:intergenic 50.0%
!! CTATGGGATAGAGTGTTGGG+CGG - chr1_2:11654316-11654335 Msa0056160:intron 50.0%
TGCACAAATAAACGGGGAGG+GGG - chr1_2:11654747-11654766 Msa0056160:CDS 50.0%
!! GGACATGAGCATTGGTGTGT+GGG + chr1_2:11654795-11654814 None:intergenic 50.0%
CACTACTGGGACATGAGCAT+TGG + chr1_2:11654803-11654822 None:intergenic 50.0%
GGTCATATATTGTGGGACGG+AGG + chr1_2:11655007-11655026 None:intergenic 50.0%
AGAGGTGGCTGAAGTAGTTC+AGG - chr1_2:11655611-11655630 Msa0056160:intron 50.0%
TTGCTTTCCAGAGTGGGATG+TGG - chr1_2:11656616-11656635 Msa0056160:intron 50.0%
ATACCTTCGGACGCCTAATG+GGG + chr1_2:11656876-11656895 None:intergenic 50.0%
GATACCTTCGGACGCCTAAT+GGG + chr1_2:11656877-11656896 None:intergenic 50.0%
GTAAGCCATGGGGATACCTT+CGG + chr1_2:11656889-11656908 None:intergenic 50.0%
AGGTTGGGATACCTCCCAAA+AGG - chr1_2:11656973-11656992 Msa0056160:intron 50.0%
! GACTGCTAGAGTCGTCCTTT+TGG + chr1_2:11656991-11657010 None:intergenic 50.0%
CGACTCTAGCAGTCAAACTC+GGG - chr1_2:11656997-11657016 Msa0056160:intron 50.0%
AGGTTAGGATTGGGATCCAG+AGG - chr1_2:11657883-11657902 Msa0056160:intron 50.0%
GCCAAGGGGTAATGATGTCT+TGG + chr1_2:11658060-11658079 None:intergenic 50.0%
AGACAAACTCTGCAGCCAAG+GGG + chr1_2:11658074-11658093 None:intergenic 50.0%
GAGACAAACTCTGCAGCCAA+GGG + chr1_2:11658075-11658094 None:intergenic 50.0%
TGAGACAAACTCTGCAGCCA+AGG + chr1_2:11658076-11658095 None:intergenic 50.0%
GTACAGTGAGCACACCCTCA+TGG - chr1_2:11653217-11653236 Msa0056160:three_prime_UTR 55.0%
!!! CTTTTTTGGCATCCGGTGCC+CGG - chr1_2:11654016-11654035 Msa0056160:intron 55.0%
!!! TTTTTTGGCATCCGGTGCCC+GGG - chr1_2:11654017-11654036 Msa0056160:intron 55.0%
CAAATAAACGGGGAGGGGGA+AGG - chr1_2:11654751-11654770 Msa0056160:CDS 55.0%
!! GGGACATGAGCATTGGTGTG+TGG + chr1_2:11654796-11654815 None:intergenic 55.0%
AACACGGGGGACGATGACTA+TGG - chr1_2:11654837-11654856 Msa0056160:intron 55.0%
CAGGTGGTGCAAACAGATGG+AGG - chr1_2:11655561-11655580 Msa0056160:intron 55.0%
CAGTACACCACATCCCACTC+TGG + chr1_2:11656626-11656645 None:intergenic 55.0%
TGTTCACAGCCAACATCCCC+TGG - chr1_2:11656644-11656663 Msa0056160:intron 55.0%
!! AGGTGGGTATCGGAGTGCAT+TGG - chr1_2:11656667-11656686 Msa0056160:intron 55.0%
!! GGTGGGTATCGGAGTGCATT+GGG - chr1_2:11656668-11656687 Msa0056160:intron 55.0%
TACCTTCGGACGCCTAATGG+GGG + chr1_2:11656875-11656894 None:intergenic 55.0%
GGATACCTTCGGACGCCTAA+TGG + chr1_2:11656878-11656897 None:intergenic 55.0%
TCCAGAGGGAGTAAGCCATG+GGG + chr1_2:11656899-11656918 None:intergenic 55.0%
GTCCAGAGGGAGTAAGCCAT+GGG + chr1_2:11656900-11656919 None:intergenic 55.0%
TACTCCCTCTGGACCCGTTA+TGG - chr1_2:11656906-11656925 Msa0056160:intron 55.0%
ACTCCCTCTGGACCCGTTAT+GGG - chr1_2:11656907-11656926 Msa0056160:intron 55.0%
!! AGTCCCATAACGGGTCCAGA+GGG + chr1_2:11656913-11656932 None:intergenic 55.0%
! GCTAGAGTCGTCCTTTTGGG+AGG + chr1_2:11656987-11657006 None:intergenic 55.0%
!! CGGGCACCGGATGCCAAAAA+AGG + chr1_2:11654018-11654037 None:intergenic 60.0%
!! TTTTTGGCATCCGGTGCCCG+GGG - chr1_2:11654018-11654037 Msa0056160:intron 60.0%
AGGGTCATGCTAACCGCCAG+CGG + chr1_2:11654046-11654065 None:intergenic 60.0%
ATAAACGGGGAGGGGGAAGG+AGG - chr1_2:11654754-11654773 Msa0056160:CDS 60.0%
! GAGGGGGAAGGAGGTGTAGT+GGG - chr1_2:11654763-11654782 Msa0056160:CDS 60.0%
CGTCCCCCGTGTTGTAGTAG+TGG + chr1_2:11654830-11654849 None:intergenic 60.0%
TCACAGCCAACATCCCCTGG+AGG - chr1_2:11656647-11656666 Msa0056160:intron 60.0%
AGCCAACATCCCCTGGAGGT+GGG - chr1_2:11656651-11656670 Msa0056160:intron 60.0%
TACCCACCTCCAGGGGATGT+TGG + chr1_2:11656656-11656675 None:intergenic 60.0%
CATCCCCTGGAGGTGGGTAT+CGG - chr1_2:11656657-11656676 Msa0056160:intron 60.0%
ACTCCGATACCCACCTCCAG+GGG + chr1_2:11656663-11656682 None:intergenic 60.0%
CACTCCGATACCCACCTCCA+GGG + chr1_2:11656664-11656683 None:intergenic 60.0%
TCCCCATGGCTTACTCCCTC+TGG - chr1_2:11656895-11656914 Msa0056160:intron 60.0%
GGTCCAGAGGGAGTAAGCCA+TGG + chr1_2:11656901-11656920 None:intergenic 60.0%
!! CAGTCCCATAACGGGTCCAG+AGG + chr1_2:11656914-11656933 None:intergenic 60.0%
! GGAGGGGGAAGGAGGTGTAG+TGG - chr1_2:11654762-11654781 Msa0056160:CDS 65.0%
CAGCCAACATCCCCTGGAGG+TGG - chr1_2:11656650-11656669 Msa0056160:intron 65.0%
GCACTCCGATACCCACCTCC+AGG + chr1_2:11656665-11656684 None:intergenic 65.0%
GACCCCCATTAGGCGTCCGA+AGG - chr1_2:11656870-11656889 Msa0056160:intron 65.0%
!! GGCGTCCGAAGGTATCCCCA+TGG - chr1_2:11656881-11656900 Msa0056160:intron 65.0%
CTAACCGCCAGCGGTGCCCC+GGG + chr1_2:11654037-11654056 None:intergenic 75.0%
GCTAACCGCCAGCGGTGCCC+CGG + chr1_2:11654038-11654057 None:intergenic 75.0%
!!! TCCGGTGCCCGGGGCACCGC+TGG - chr1_2:11654027-11654046 Msa0056160:intron 85.0%
! GCCAGCGGTGCCCCGGGCAC+CGG + chr1_2:11654031-11654050 None:intergenic 85.0%
!!! GGTGCCCGGGGCACCGCTGG+CGG - chr1_2:11654030-11654049 Msa0056160:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 11653166 11658288 11653166 ID=Msa0056160;Name=Msa0056160
chr1_2 mRNA 11653166 11658288 11653166 ID=Msa0056160-mRNA-1;Parent=Msa0056160;Name=Msa0056160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=70|0.66|0.75|1|1|1|4|355|224
chr1_2 exon 11653166 11653708 11653166 ID=Msa0056160-mRNA-1:exon:4461;Parent=Msa0056160-mRNA-1
chr1_2 exon 11654678 11654827 11654678 ID=Msa0056160-mRNA-1:exon:4460;Parent=Msa0056160-mRNA-1
chr1_2 exon 11655767 11655890 11655767 ID=Msa0056160-mRNA-1:exon:4459;Parent=Msa0056160-mRNA-1
chr1_2 exon 11658006 11658288 11658006 ID=Msa0056160-mRNA-1:exon:4458;Parent=Msa0056160-mRNA-1
chr1_2 five_prime_UTR 11658219 11658288 11658219 ID=Msa0056160-mRNA-1:five_prime_utr;Parent=Msa0056160-mRNA-1
chr1_2 CDS 11658006 11658218 11658006 ID=Msa0056160-mRNA-1:cds;Parent=Msa0056160-mRNA-1
chr1_2 CDS 11655767 11655890 11655767 ID=Msa0056160-mRNA-1:cds;Parent=Msa0056160-mRNA-1
chr1_2 CDS 11654678 11654827 11654678 ID=Msa0056160-mRNA-1:cds;Parent=Msa0056160-mRNA-1
chr1_2 CDS 11653521 11653708 11653521 ID=Msa0056160-mRNA-1:cds;Parent=Msa0056160-mRNA-1
chr1_2 three_prime_UTR 11653166 11653520 11653166 ID=Msa0056160-mRNA-1:three_prime_utr;Parent=Msa0056160-mRNA-1
Gene Sequence

>Msa0056160

ATGGCTGCAGCTTATGCTTCTGCGTTTCGCTTAGTACAATCTTCATTCGAATTCAGAAGCCATAATAATAATAATAACTTTCCAACATCCAAATCATTTAACATCCGTTTCCCTCGCCGTAAAAACAGCTTATGCGTTTCCGCTTCCGTTTCTATTTCTAACACGGATGTCCGAACAGGTCCTAATGATCTCGTAGCTTCTCTTCTTTCAAAGGTGGTGCAAACAGATGGAGGAGTTTTACTGCAAAAGGAAGAACACAAAGAGGTGGCTGAAGTAGTTCAGGAATTGCAGAAGTATTGTGTGAAAGAGCCGGTGAAATGCCCTTTAATATTTGGAGAGTGGGATGTGGTGTACTGTTCACAGCCAACATCCCCTGGAGGTGGGTATCGGAGTGCATTGGGCAGAGTTTTTTTCAAAACAAAGGAAATGGTTCAGGTTGTTGAAGCTCCTGATGTTGTGAGAAACAAAATCGCATTTACTGCTTTAGGAACACTCAAAGCTCTAGATACTGAATGGATTCAAGTTGTATTTGAAGCGCCTGAATTGAAGTTAGGATCATGGAAAGGACAATATGGAGGTCAGAGTGAAGTTAAACTCCGAATCACTTATGTAGATGAAAAAATCAGGTTAGGATTGGGATCCAGAGGTTCACTGTTTGTTTTTCGAAGAATATGA

Protein sequence

>Msa0056160

MAAAYASAFRLVQSSFEFRSHNNNNNFPTSKSFNIRFPRRKNSLCVSASVSISNTDVRTGPNDLVASLLSKVVQTDGGVLLQKEEHKEVAEVVQELQKYCVKEPVKCPLIFGEWDVVYCSQPTSPGGGYRSALGRVFFKTKEMVQVVEAPDVVRNKIAFTALGTLKALDTEWIQVVFEAPELKLGSWKGQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFRRI*