AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0394400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394400 MtrunA17_Chr3g0080061 95.536 112 5 0 55 166 26 137 8.16e-81 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394400 AT5G63690.1 63.248 117 41 2 50 165 23 138 2.39e-52 163
Msa0394400 AT5G63690.2 63.248 117 41 2 50 165 23 138 2.39e-52 163

Find 39 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTCATTTACAACTTT+GGG 0.191576 3_2:-9006907 Msa0394400:CDS
CACATCAAAATCTACAAAAT+TGG 0.250053 3_2:+9006639 None:intergenic
TTCCACTACTAATGGCAAAA+AGG 0.251659 3_2:-9011844 None:intergenic
CTGCAATTCATTTACAACTT+TGG 0.295983 3_2:-9006908 Msa0394400:CDS
TCTTACCTGCCCTTAGTATA+AGG 0.314556 3_2:+9006808 None:intergenic
AGTGGGTGCTCTTGGAGCTT+TGG 0.328706 3_2:-9011705 Msa0394400:CDS
AGCTTTGAAGTGGGTGCTCT+TGG 0.342830 3_2:-9011713 Msa0394400:CDS
TTCTTAGAATTTGTTGGGTC+AGG 0.345198 3_2:+9006708 None:intergenic
TGGAGAGAAGGCACGGGAAT+GGG 0.347886 3_2:+9006659 None:intergenic
CAAACATGAGTGAGATTCAT+TGG 0.355934 3_2:-9006734 Msa0394400:CDS
TGCGTGGCAACCTTATACTA+AGG 0.364864 3_2:-9006818 Msa0394400:CDS
AGAGGAAAGCTTGAGAAGAT+AGG 0.378036 3_2:-9006786 Msa0394400:CDS
TATACTTCTTAGAATTTGTT+GGG 0.390203 3_2:+9006703 None:intergenic
CAATGAATCTCACTCATGTT+TGG 0.429356 3_2:+9006735 None:intergenic
ATATACTTCTTAGAATTTGT+TGG 0.431038 3_2:+9006702 None:intergenic
TCAAAGCTCTCTTCCCTCAA+TGG 0.456615 3_2:+9011728 None:intergenic
GCGAGAGAGAAGAGAAGGTC+TGG 0.468384 3_2:+9011798 None:intergenic
AAAGGGAGGACAACACTTGA+AGG 0.498268 3_2:-9006972 Msa0394400:intron
GGGGAGATATGACATACTCT+TGG 0.503412 3_2:+9006679 None:intergenic
TTGGAGAGAAGGCACGGGAA+TGG 0.503623 3_2:+9006658 None:intergenic
GGAGAGAAGGCACGGGAATG+GGG 0.529940 3_2:+9006660 None:intergenic
AATCTACAAAATTGGAGAGA+AGG 0.536686 3_2:+9006647 None:intergenic
GACGCGCGAGAGAGAAGAGA+AGG 0.565738 3_2:+9011793 None:intergenic
CATGTTTGGTGTCTCAACAT+AGG 0.565946 3_2:+9006749 None:intergenic
ACAAAATTGGAGAGAAGGCA+CGG 0.567717 3_2:+9006652 None:intergenic
TATAAGGTTGCCACGCAGGT+AGG 0.568146 3_2:+9006824 None:intergenic
GGCAACCTTATACTAAGGGC+AGG 0.570742 3_2:-9006813 Msa0394400:CDS
GAGGGAAGAGAGCTTTGAAG+TGG 0.579089 3_2:-9011723 Msa0394400:CDS
GCAATTCATTTACAACTTTG+GGG 0.580709 3_2:-9006906 Msa0394400:CDS
TTAGTATAAGGTTGCCACGC+AGG 0.586370 3_2:+9006820 None:intergenic
ATACTAAGGGCAGGTAAGAG+AGG 0.591856 3_2:-9006804 Msa0394400:CDS
CAGGTAGGAAAAGATACCAT+TGG 0.607789 3_2:+9006839 None:intergenic
GAGCTTTGGAATCAACCTTG+AGG 0.626303 3_2:-9011691 Msa0394400:intron
CAAAATTGGAGAGAAGGCAC+GGG 0.629659 3_2:+9006653 None:intergenic
GACATCGTTTATATGACCAA+TGG 0.633538 3_2:-9006855 Msa0394400:CDS
AAGGGAGGACAACACTTGAA+GGG 0.635043 3_2:-9006971 Msa0394400:intron
AGGGAAGAGAGCTTTGAAGT+GGG 0.637993 3_2:-9011722 Msa0394400:CDS
GCGTGGCAACCTTATACTAA+GGG 0.670757 3_2:-9006817 Msa0394400:CDS
AAGTTGTAAATGAATTGCAG+CGG 0.683257 3_2:+9006911 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTAATTAATTATTGTAA+TGG - chr3_2:9006881-9006900 Msa0394400:CDS 10.0%
!! TGTTAATTAATTATTGTAAT+GGG - chr3_2:9006882-9006901 Msa0394400:CDS 10.0%
!! AATATGTATATGTATATAAA+GGG + chr3_2:9007875-9007894 None:intergenic 10.0%
!!! TAAAATTCTAGAAAATTATA+TGG - chr3_2:9008127-9008146 Msa0394400:intron 10.0%
!!! AAAATTCTAGAAAATTATAT+GGG - chr3_2:9008128-9008147 Msa0394400:intron 10.0%
!! TTGTTAATTAATTATTGTAA+TGG - chr3_2:9006881-9006900 Msa0394400:CDS 10.0%
!! TGTTAATTAATTATTGTAAT+GGG - chr3_2:9006882-9006901 Msa0394400:CDS 10.0%
!! TATTAAAATTCATATTATCA+CGG + chr3_2:9007451-9007470 None:intergenic 10.0%
!!! TATGATTTTTATAAATGAAA+TGG - chr3_2:9010255-9010274 Msa0394400:intron 10.0%
!!! AATTTTCTATAATTTTATAG+AGG + chr3_2:9010684-9010703 None:intergenic 10.0%
!! ATTATATCATTATAGAAATT+TGG - chr3_2:9010963-9010982 Msa0394400:intron 10.0%
!! TTCAAATAAATTAAATTGTG+TGG - chr3_2:9007707-9007726 Msa0394400:intron 15.0%
!! TAATAAATCAATACATTTAC+CGG + chr3_2:9007741-9007760 None:intergenic 15.0%
!! GTAATTCTTGAAATATTTAA+AGG + chr3_2:9007853-9007872 None:intergenic 15.0%
!! CAATATGTATATGTATATAA+AGG + chr3_2:9007876-9007895 None:intergenic 15.0%
!! CTTTATATACATATACATAT+TGG - chr3_2:9007874-9007893 Msa0394400:intron 15.0%
!! AGAATGTATATGTATATAAA+GGG + chr3_2:9008062-9008081 None:intergenic 15.0%
!! AAGAATGTATATGTATATAA+AGG + chr3_2:9008063-9008082 None:intergenic 15.0%
!!! AATTTTCTAGAATTTTATAC+AGG + chr3_2:9008124-9008143 None:intergenic 15.0%
!!! AAATTCTAGAAAATTATATG+GGG - chr3_2:9008129-9008148 Msa0394400:intron 15.0%
!!! ATCAATTTTACAAATGAATA+TGG - chr3_2:9009089-9009108 Msa0394400:intron 15.0%
!!! TTTAAAACATCCAAATATTT+AGG - chr3_2:9009144-9009163 Msa0394400:intron 15.0%
!!! GTTTTTTGTTTTTTCAAAAT+CGG - chr3_2:9009176-9009195 Msa0394400:intron 15.0%
!! TTTATATTGTTCAGTTATTA+TGG - chr3_2:9010315-9010334 Msa0394400:intron 15.0%
!! TTCAAATAAATTAAATTGTG+AGG - chr3_2:9007707-9007726 Msa0394400:intron 15.0%
!! TAATAAATCAATACATTTAC+CGG + chr3_2:9007741-9007760 None:intergenic 15.0%
!! ATTCTTGAAATATTTAAAGA+TGG + chr3_2:9010597-9010616 None:intergenic 15.0%
!! AAAATGTATATGTACATAAA+GGG + chr3_2:9010622-9010641 None:intergenic 15.0%
!! AAAAATGTATATGTACATAA+AGG + chr3_2:9010623-9010642 None:intergenic 15.0%
!! AATACCAAATTATAAAGAAT+TGG + chr3_2:9011096-9011115 None:intergenic 15.0%
!!! TAATTTGGTATTTTATTCAT+AGG - chr3_2:9011104-9011123 Msa0394400:intron 15.0%
!! CTATTATATTAAATAGGAAT+AGG + chr3_2:9011255-9011274 None:intergenic 15.0%
!! TAGTGACTATTATATTAAAT+AGG + chr3_2:9011261-9011280 None:intergenic 15.0%
!!! TGTATTTTATTTTTTTGCAA+TGG - chr3_2:9011318-9011337 Msa0394400:intron 15.0%
!!! AGACACTAAATTTATAATTT+TGG - chr3_2:9011486-9011505 Msa0394400:intron 15.0%
!!! AAATTTATAATTTTGGAGAA+AGG - chr3_2:9011493-9011512 Msa0394400:intron 15.0%
!!! AATTTATAATTTTGGAGAAA+GGG - chr3_2:9011494-9011513 Msa0394400:intron 15.0%
!!! TTTTTTTTAGTCAAACGATT+AGG - chr3_2:9006929-9006948 Msa0394400:CDS 20.0%
!! TAAGTTTAATTCTCTTGATT+AGG - chr3_2:9007041-9007060 Msa0394400:intron 20.0%
!! AAGTTTAATTCTCTTGATTA+GGG - chr3_2:9007042-9007061 Msa0394400:intron 20.0%
!!! TAGTATTTTCCATTTACTAA+AGG - chr3_2:9007180-9007199 Msa0394400:intron 20.0%
!! TAATTTCATCCTTTAGTAAA+TGG + chr3_2:9007192-9007211 None:intergenic 20.0%
!! ATATTGCACAATTATTATGA+TGG + chr3_2:9007215-9007234 None:intergenic 20.0%
!! GAATTATTGTTCAGTTATTA+TGG - chr3_2:9007546-9007565 Msa0394400:intron 20.0%
!! ATTCTTGAAATATTTAAAGG+TGG + chr3_2:9007850-9007869 None:intergenic 20.0%
!! TGTATATAAAGGGTAAAAAA+GGG + chr3_2:9008052-9008071 None:intergenic 20.0%
!! ATGTATATAAAGGGTAAAAA+AGG + chr3_2:9008053-9008072 None:intergenic 20.0%
!!! ATTGTCATTTAAAGATTTTC+TGG + chr3_2:9008492-9008511 None:intergenic 20.0%
!! AGAAAATCTTTAAATGACAA+TGG - chr3_2:9008491-9008510 Msa0394400:intron 20.0%
!! GATCTAAATCCAATTAAATA+TGG - chr3_2:9008881-9008900 Msa0394400:intron 20.0%
!! CAAACTAAACCATATTTAAT+TGG + chr3_2:9008893-9008912 None:intergenic 20.0%
!! CAATTAAATATGGTTTAGTT+TGG - chr3_2:9008891-9008910 Msa0394400:intron 20.0%
!! ACTATTAGAATTTATACATG+CGG - chr3_2:9009061-9009080 Msa0394400:intron 20.0%
!! TCAGTTTACAATTTAAATCA+AGG - chr3_2:9009218-9009237 Msa0394400:intron 20.0%
!! AGGATGATTAAAATTTAAGA+AGG - chr3_2:9009238-9009257 Msa0394400:intron 20.0%
!! GGATGATTAAAATTTAAGAA+GGG - chr3_2:9009239-9009258 Msa0394400:intron 20.0%
!!! TTTTTTTTAGTCAAACGATT+AGG - chr3_2:9006929-9006948 Msa0394400:CDS 20.0%
!! TTAATTATGTTACAAAGATG+AGG - chr3_2:9009638-9009657 Msa0394400:intron 20.0%
!! TAAGTTTAATTCTCTTGATT+AGG - chr3_2:9007041-9007060 Msa0394400:intron 20.0%
!! AAGTTTAATTCTCTTGATTA+GGG - chr3_2:9007042-9007061 Msa0394400:intron 20.0%
!!! TAGTATTTTCCATTTACTAA+AGG - chr3_2:9007180-9007199 Msa0394400:intron 20.0%
!! TAATTTCATCCTTTAGTAAA+TGG + chr3_2:9007192-9007211 None:intergenic 20.0%
!!! TTTTTATAAATGAAATGGAC+TGG - chr3_2:9010260-9010279 Msa0394400:intron 20.0%
!!! TCAGATATATTTTATGAAAC+TGG - chr3_2:9010404-9010423 Msa0394400:intron 20.0%
!! ATCATTATAGAAATTTGGAA+AGG - chr3_2:9010968-9010987 Msa0394400:intron 20.0%
!! TCATTATAGAAATTTGGAAA+GGG - chr3_2:9010969-9010988 Msa0394400:intron 20.0%
!! AGAACCAATTCTTTATAATT+TGG - chr3_2:9011089-9011108 Msa0394400:intron 20.0%
!!! ATTTTATTTTTTTGCAATGG+CGG - chr3_2:9011321-9011340 Msa0394400:intron 20.0%
!!! TATACTTCTTAGAATTTGTT+GGG + chr3_2:9011783-9011802 None:intergenic 20.0%
!! ATATACTTCTTAGAATTTGT+TGG + chr3_2:9011784-9011803 None:intergenic 20.0%
!!! TGGAAGATTTTTGTTTTTGT+AGG + chr3_2:9006738-9006757 None:intergenic 25.0%
! AAAACAAAAATCTTCCATTG+AGG - chr3_2:9006741-9006760 Msa0394400:CDS 25.0%
! AAACAAAAATCTTCCATTGA+GGG - chr3_2:9006742-9006761 Msa0394400:CDS 25.0%
! TACTAGAATTGAAGGATATT+AGG + chr3_2:9006824-9006843 None:intergenic 25.0%
! ACAATTTCTACTAGAATTGA+AGG + chr3_2:9006832-9006851 None:intergenic 25.0%
!! AGTAGAAATTGTTGATGAAT+TGG - chr3_2:9006840-9006859 Msa0394400:CDS 25.0%
!! GTAGAAATTGTTGATGAATT+GGG - chr3_2:9006841-9006860 Msa0394400:CDS 25.0%
! TTAATTATGTTACAAAGACG+AGG - chr3_2:9006966-9006985 Msa0394400:CDS 25.0%
!!! AGGAAACTGAATTTTTTGAT+AGG - chr3_2:9006999-9007018 Msa0394400:intron 25.0%
! CAAGAGAATTAAACTTAGTT+AGG + chr3_2:9007038-9007057 None:intergenic 25.0%
! AGTTTAATTCTCTTGATTAG+GGG - chr3_2:9007043-9007062 Msa0394400:intron 25.0%
!! TTGAAGTGTTAGATTAAGTA+TGG - chr3_2:9007073-9007092 Msa0394400:intron 25.0%
!! TGAAGTGTTAGATTAAGTAT+GGG - chr3_2:9007074-9007093 Msa0394400:intron 25.0%
! TAATCTTCAAAGTTGTTAGT+AGG - chr3_2:9007115-9007134 Msa0394400:intron 25.0%
! CTATTGTTAACTAACAACTT+AGG + chr3_2:9007148-9007167 None:intergenic 25.0%
! CTAAGTTGTTAGTTAACAAT+AGG - chr3_2:9007146-9007165 Msa0394400:intron 25.0%
! GAAATGATTTAAATTCTAGC+TGG - chr3_2:9007479-9007498 Msa0394400:intron 25.0%
!! TCAGATATGTTTTATGAAAC+TGG - chr3_2:9007667-9007686 Msa0394400:intron 25.0%
! ATTTAAATGATCAATCGAGT+TGG - chr3_2:9008234-9008253 Msa0394400:intron 25.0%
!! TTTTACAAATGTGATATCAG+TGG - chr3_2:9008267-9008286 Msa0394400:intron 25.0%
! TTTACAAATGTGATATCAGT+GGG - chr3_2:9008268-9008287 Msa0394400:intron 25.0%
! ACAATCACCTAAATAGTATA+AGG + chr3_2:9008312-9008331 None:intergenic 25.0%
! TTATACTATTTAGGTGATTG+TGG - chr3_2:9008311-9008330 Msa0394400:intron 25.0%
!! TTTTACAAAAATTGCAGGTA+AGG + chr3_2:9008401-9008420 None:intergenic 25.0%
!!! ACTACTTTTACAAAAATTGC+AGG + chr3_2:9008406-9008425 None:intergenic 25.0%
!! TCAAGTTTTCTTCTTGAAAT+GGG + chr3_2:9008575-9008594 None:intergenic 25.0%
!!! TTAGATAACCATTTTGTTGT+GGG - chr3_2:9008661-9008680 Msa0394400:intron 25.0%
! CTTAGTCATTTCAAATGATA+AGG - chr3_2:9009266-9009285 Msa0394400:intron 25.0%
! CATTTCAAATGATAAGGAAA+AGG - chr3_2:9009272-9009291 Msa0394400:intron 25.0%
!!! TGGAAGATTTTTGTTTTTGT+AGG + chr3_2:9006738-9006757 None:intergenic 25.0%
! AAAACAAAAATCTTCCATTG+AGG - chr3_2:9006741-9006760 Msa0394400:CDS 25.0%
! AAACAAAAATCTTCCATTGA+GGG - chr3_2:9006742-9006761 Msa0394400:CDS 25.0%
! AACTAGAATTGAAGGATATT+AGG + chr3_2:9009496-9009515 None:intergenic 25.0%
! ACAATTTCAACTAGAATTGA+AGG + chr3_2:9009504-9009523 None:intergenic 25.0%
!! AGTTGAAATTGTTGATGAAT+TGG - chr3_2:9009512-9009531 Msa0394400:intron 25.0%
!! GTTGAAATTGTTGATGAATT+GGG - chr3_2:9009513-9009532 Msa0394400:intron 25.0%
!!! AGGAAACTGAATTTTTTGAT+AGG - chr3_2:9006999-9007018 Msa0394400:intron 25.0%
! AGTTTAATTCTCTTGATTAG+GGG - chr3_2:9007043-9007062 Msa0394400:intron 25.0%
!! TTGAAGTGTTAGATTAAGTA+TGG - chr3_2:9007073-9007092 Msa0394400:intron 25.0%
!! TGAAGTGTTAGATTAAGTAT+GGG - chr3_2:9007074-9007093 Msa0394400:intron 25.0%
! TAATCTTCAAAGTTGTTAGT+AGG - chr3_2:9007115-9007134 Msa0394400:intron 25.0%
! CTATTGTTAACTAACAACTT+AGG + chr3_2:9007148-9007167 None:intergenic 25.0%
! CTAAGTTGTTAGTTAACAAT+AGG - chr3_2:9007146-9007165 Msa0394400:intron 25.0%
!! CTTTATGCACAATTTTATGA+TGG + chr3_2:9009887-9009906 None:intergenic 25.0%
! CAAGTACATAATGATGAAAT+TGG - chr3_2:9010289-9010308 Msa0394400:intron 25.0%
! ATTTAAATGATCAATCGAGT+TGG - chr3_2:9008234-9008253 Msa0394400:intron 25.0%
!!! AGTAGTGAACAAAGTTTTTT+AGG + chr3_2:9010830-9010849 None:intergenic 25.0%
! TGACAATTGTGTAATCATAT+TGG - chr3_2:9011177-9011196 Msa0394400:intron 25.0%
!!! CAGTTCAGTTTTTTAAACTT+TGG - chr3_2:9011390-9011409 Msa0394400:intron 25.0%
! TGCAATTCATTTACAACTTT+GGG - chr3_2:9011576-9011595 Msa0394400:intron 25.0%
!!! GAATGTGATTATTTTGATTC+AGG - chr3_2:9011604-9011623 Msa0394400:intron 25.0%
ATTATCATCCTAGCATTCTA+TGG + chr3_2:9007270-9007289 None:intergenic 30.0%
AAAGTTCTCTTAAAACGAAC+TGG - chr3_2:9007391-9007410 Msa0394400:intron 30.0%
TATTACTTCTAATGCTTTGC+TGG - chr3_2:9007756-9007775 Msa0394400:intron 30.0%
AATAACTGAGTCGAATTACA+GGG + chr3_2:9008093-9008112 None:intergenic 30.0%
AAATAACTGAGTCGAATTAC+AGG + chr3_2:9008094-9008113 None:intergenic 30.0%
TTACAAATGTGATATCAGTG+GGG - chr3_2:9008269-9008288 Msa0394400:intron 30.0%
AGGCTTACCTTATACTATTT+AGG - chr3_2:9008302-9008321 Msa0394400:intron 30.0%
ACAAAAAATATCCAATGTCC+AGG + chr3_2:9008550-9008569 None:intergenic 30.0%
! GTCAAGTTTTCTTCTTGAAA+TGG + chr3_2:9008576-9008595 None:intergenic 30.0%
! GTTAGATAACCATTTTGTTG+TGG - chr3_2:9008660-9008679 Msa0394400:intron 30.0%
GTACTACAATGAATGAATTG+AGG + chr3_2:9008723-9008742 None:intergenic 30.0%
TGCAAAAACAAAATGTGGTT+TGG - chr3_2:9008833-9008852 Msa0394400:intron 30.0%
!! AAACAAAATGTGGTTTGGTT+TGG - chr3_2:9008838-9008857 Msa0394400:intron 30.0%
CATGGTTGAAATCATAACAA+AGG - chr3_2:9008943-9008962 Msa0394400:intron 30.0%
ATCCAAACAAGTTTCACATA+AGG - chr3_2:9009118-9009137 Msa0394400:intron 30.0%
! TTCCTTATGTGAAACTTGTT+TGG + chr3_2:9009123-9009142 None:intergenic 30.0%
CTGCACTAAACCTAAATATT+TGG + chr3_2:9009157-9009176 None:intergenic 30.0%
TCAAATGATAAGGAAAAGGA+AGG - chr3_2:9009276-9009295 Msa0394400:intron 30.0%
TTAGTCATTTCCACTACTAA+TGG - chr3_2:9009304-9009323 Msa0394400:intron 30.0%
ATTATCATCCTAGCATTCTA+TGG + chr3_2:9007270-9007289 None:intergenic 30.0%
AAAGTTCTCTTAAAACGAAC+TGG - chr3_2:9007391-9007410 Msa0394400:intron 30.0%
! GAAATGATTTAAGTTCTAGC+TGG - chr3_2:9010172-9010191 Msa0394400:intron 30.0%
GTACATAATGATGAAATTGG+CGG - chr3_2:9010292-9010311 Msa0394400:intron 30.0%
GATAATTGAGTCGAATTACA+GGG + chr3_2:9010653-9010672 None:intergenic 30.0%
AGATAATTGAGTCGAATTAC+AGG + chr3_2:9010654-9010673 None:intergenic 30.0%
GAGTGGAAATTAGAAAATGT+TGG - chr3_2:9011024-9011043 Msa0394400:intron 30.0%
CAATTGTGTAATCATATTGG+AGG - chr3_2:9011180-9011199 Msa0394400:intron 30.0%
AACTGAACTGAAAATCAAAC+CGG + chr3_2:9011380-9011399 None:intergenic 30.0%
!! TTATAATTTTGGAGAAAGGG+AGG - chr3_2:9011497-9011516 Msa0394400:intron 30.0%
!! AGGGCAAAATAAAAAGTGTT+TGG - chr3_2:9011531-9011550 Msa0394400:intron 30.0%
AAGTTGTAAATGAATTGCAG+CGG + chr3_2:9011575-9011594 None:intergenic 30.0%
CTGCAATTCATTTACAACTT+TGG - chr3_2:9011575-9011594 Msa0394400:intron 30.0%
GCAATTCATTTACAACTTTG+GGG - chr3_2:9011577-9011596 Msa0394400:intron 30.0%
!! TTGTAATGGGCTTAAGAACT+AGG - chr3_2:9006895-9006914 Msa0394400:CDS 35.0%
! AGAATGCTAGGATGATAATG+TGG - chr3_2:9007271-9007290 Msa0394400:intron 35.0%
AACTGGATTTCTGACACATA+CGG - chr3_2:9007408-9007427 Msa0394400:intron 35.0%
! TTTAAATTCTAGCTGGTACC+TGG - chr3_2:9007486-9007505 Msa0394400:intron 35.0%
ATACTGTCTATTACATCACC+AGG + chr3_2:9007507-9007526 None:intergenic 35.0%
! TTGCTGGTGTTGAATATTGT+TGG - chr3_2:9007772-9007791 Msa0394400:intron 35.0%
! TGCTGGTGTTGAATATTGTT+GGG - chr3_2:9007773-9007792 Msa0394400:intron 35.0%
GTTGTTGTCATGTGATTGAA+AGG - chr3_2:9007910-9007929 Msa0394400:intron 35.0%
AACAACCTCTTGTGTAAAAC+AGG - chr3_2:9007953-9007972 Msa0394400:intron 35.0%
ACAACCTCTTGTGTAAAACA+GGG - chr3_2:9007954-9007973 Msa0394400:intron 35.0%
!! TTTTGCATCTAGAACCTCAA+GGG + chr3_2:9008166-9008185 None:intergenic 35.0%
!! TTTTTGCATCTAGAACCTCA+AGG + chr3_2:9008167-9008186 None:intergenic 35.0%
ATCGTCTGTTGTTACAAGAA+AGG + chr3_2:9008211-9008230 None:intergenic 35.0%
TTTCTTGTAACAACAGACGA+TGG - chr3_2:9008210-9008229 Msa0394400:intron 35.0%
TTCTTGTAACAACAGACGAT+GGG - chr3_2:9008211-9008230 Msa0394400:intron 35.0%
! ATCAGTGGGGATTTTATTAC+AGG - chr3_2:9008282-9008301 Msa0394400:intron 35.0%
TTAGGTGATTGTGGACAAAT+TGG - chr3_2:9008320-9008339 Msa0394400:intron 35.0%
TAGGTGATTGTGGACAAATT+GGG - chr3_2:9008321-9008340 Msa0394400:intron 35.0%
GTAAAAGTAGTGCAATTGCA+TGG - chr3_2:9008415-9008434 Msa0394400:intron 35.0%
!! GAAATTTGTTGCTCACAACA+TGG + chr3_2:9008445-9008464 None:intergenic 35.0%
! TAGAGTTGGTTACTTCAGTA+TGG + chr3_2:9008517-9008536 None:intergenic 35.0%
GCTCTTATCTATAACTCTAG+TGG + chr3_2:9008619-9008638 None:intergenic 35.0%
TGGTTATCTAACACTTGCTT+TGG + chr3_2:9008652-9008671 None:intergenic 35.0%
TCAAACTTCCCACAACAAAA+TGG + chr3_2:9008672-9008691 None:intergenic 35.0%
CACGATGCAAAAACAAAATG+TGG - chr3_2:9008828-9008847 Msa0394400:intron 35.0%
! GTTAAAGAGTTGAAAGTGCA+TGG - chr3_2:9008925-9008944 Msa0394400:intron 35.0%
TTCCACTACTAATGGCAAAA+AGG - chr3_2:9009312-9009331 Msa0394400:intron 35.0%
!! TTGTAATGGGCTTAAGAACT+AGG - chr3_2:9006895-9006914 Msa0394400:CDS 35.0%
AAAGATGAGGTCAAACGATT+AGG - chr3_2:9009651-9009670 Msa0394400:intron 35.0%
! AGAATGCTAGGATGATAATG+TGG - chr3_2:9007271-9007290 Msa0394400:intron 35.0%
! GTTGTACTCTGATCTCTTTT+AGG - chr3_2:9010030-9010049 Msa0394400:intron 35.0%
ATGTGAATATTGTCGAGTGT+GGG + chr3_2:9010540-9010559 None:intergenic 35.0%
TATGTGAATATTGTCGAGTG+TGG + chr3_2:9010541-9010560 None:intergenic 35.0%
AAACTTTGTTCACTACTTGC+AGG - chr3_2:9010833-9010852 Msa0394400:intron 35.0%
! TGTCGTTTATCCATCTCTAA+TGG - chr3_2:9010875-9010894 Msa0394400:intron 35.0%
GTCGTTTATCCATCTCTAAT+GGG - chr3_2:9010876-9010895 Msa0394400:intron 35.0%
!!! TATTTTTTTGCAATGGCGGT+TGG - chr3_2:9011325-9011344 Msa0394400:intron 35.0%
GACATCGTTTATATGACCAA+TGG - chr3_2:9011628-9011647 Msa0394400:intron 35.0%
CAATGAATCTCACTCATGTT+TGG + chr3_2:9011751-9011770 None:intergenic 35.0%
CAAACATGAGTGAGATTCAT+TGG - chr3_2:9011749-9011768 Msa0394400:CDS 35.0%
!! TTCTTAGAATTTGTTGGGTC+AGG + chr3_2:9011778-9011797 None:intergenic 35.0%
GATATTAGGAACTCACCTCA+AGG + chr3_2:9006810-9006829 None:intergenic 40.0%
AAAGACGAGGTCAAACGATT+AGG - chr3_2:9006979-9006998 Msa0394400:intron 40.0%
AGAGACTACCATAGAATGCT+AGG - chr3_2:9007259-9007278 Msa0394400:intron 40.0%
! AGGATGATAATGTGGCCTAA+AGG - chr3_2:9007279-9007298 Msa0394400:intron 40.0%
! TGATAATGTGGCCTAAAGGA+AGG - chr3_2:9007283-9007302 Msa0394400:intron 40.0%
TCAGTCGTATTCCTTCCTTT+AGG + chr3_2:9007297-9007316 None:intergenic 40.0%
GTTGTACTCTGATCTCTTGT+AGG - chr3_2:9007337-9007356 Msa0394400:intron 40.0%
TGAAACTGGCGTAAATAGTC+AGG - chr3_2:9007681-9007700 Msa0394400:intron 40.0%
CATATACATATTGGCGCAAC+TGG - chr3_2:9007883-9007902 Msa0394400:intron 40.0%
GTCATGTGATTGAAAGGTCA+CGG - chr3_2:9007916-9007935 Msa0394400:intron 40.0%
TCATGTGATTGAAAGGTCAC+GGG - chr3_2:9007917-9007936 Msa0394400:intron 40.0%
! TTACACAAGAGGTTGTTTCC+AGG + chr3_2:9007950-9007969 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr3_2:9007961-9007980 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr3_2:9007959-9007978 Msa0394400:intron 40.0%
AATACACCAAATGGTGTTCC+CGG - chr3_2:9007990-9008009 Msa0394400:intron 40.0%
!!! TTGTTTTTGCATCGTGAGCA+TGG + chr3_2:9008824-9008843 None:intergenic 40.0%
! CACCTTTTTGCCATTAGTAG+TGG + chr3_2:9009317-9009336 None:intergenic 40.0%
CTACTAATGGCAAAAAGGTG+TGG - chr3_2:9009317-9009336 Msa0394400:intron 40.0%
GATATTAGGAACTCACCTCA+AGG + chr3_2:9006810-9006829 None:intergenic 40.0%
AGAGACTACCATAGAATGCT+AGG - chr3_2:9007259-9007278 Msa0394400:intron 40.0%
! AGGATGATAATGTGGCCTAA+AGG - chr3_2:9007279-9007298 Msa0394400:intron 40.0%
! TGATAATGTGGCCTAAAGGA+AGG - chr3_2:9007283-9007302 Msa0394400:intron 40.0%
TCAGTCGTATTCCTTCCTTT+AGG + chr3_2:9007297-9007316 None:intergenic 40.0%
! TTTAAGTTCTAGCTGGTACC+TGG - chr3_2:9010179-9010198 Msa0394400:intron 40.0%
TGACACTCTATTACATCACC+AGG + chr3_2:9010200-9010219 None:intergenic 40.0%
TGAAACTGGTGTGAATAGTC+AGG - chr3_2:9010418-9010437 Msa0394400:intron 40.0%
AAATTGTGAGGTCATGTAGC+CGG - chr3_2:9010456-9010475 Msa0394400:intron 40.0%
TATTATTTCCAACGCTTCGC+TGG - chr3_2:9010493-9010512 Msa0394400:intron 40.0%
! TCGCTGGTGTTGAATATTGT+TGG - chr3_2:9010509-9010528 Msa0394400:intron 40.0%
! CGCTGGTGTTGAATATTGTT+GGG - chr3_2:9010510-9010529 Msa0394400:intron 40.0%
TTTCTTGTCACAAGAGACGA+CGG - chr3_2:9010748-9010767 Msa0394400:intron 40.0%
ATCAGATCTCCCATTAGAGA+TGG + chr3_2:9010888-9010907 None:intergenic 40.0%
CACAATAACACAGATGAGAG+TGG - chr3_2:9011007-9011026 Msa0394400:intron 40.0%
!! CCTTTGGTTTGTGGTTCAAT+CGG + chr3_2:9011352-9011371 None:intergenic 40.0%
ACAATCATCTTCCTGCAAGA+AGG + chr3_2:9011430-9011449 None:intergenic 40.0%
CAGGTAGGAAAAGATACCAT+TGG + chr3_2:9011647-9011666 None:intergenic 40.0%
TCTTACCTGCCCTTAGTATA+AGG + chr3_2:9011678-9011697 None:intergenic 40.0%
AGAGGAAAGCTTGAGAAGAT+AGG - chr3_2:9011697-9011716 Msa0394400:CDS 40.0%
!! CATGTTTGGTGTCTCAACAT+AGG + chr3_2:9011737-9011756 None:intergenic 40.0%
ACAAAATTGGAGAGAAGGCA+CGG + chr3_2:9011834-9011853 None:intergenic 40.0%
CAAAAAGGGGCAAAAAGGTG+TGG - chr3_2:9006654-9006673 Msa0394400:CDS 45.0%
TCAAAGCTCTCTTCCCTCAA+TGG + chr3_2:9006758-9006777 None:intergenic 45.0%
!! AGGGAAGAGAGCTTTGAAGT+GGG - chr3_2:9006761-9006780 Msa0394400:CDS 45.0%
!! GAGCTTTGGAATCAACCTTG+AGG - chr3_2:9006792-9006811 Msa0394400:CDS 45.0%
ATTCTCTTGATTAGGGGCTG+TGG - chr3_2:9007049-9007068 Msa0394400:intron 45.0%
AAATTGTGTGGTCACGTAGC+CGG - chr3_2:9007719-9007738 Msa0394400:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_2:9007981-9008000 Msa0394400:intron 45.0%
AAGGGTAAAAAAGGGCAACC+CGG + chr3_2:9008044-9008063 None:intergenic 45.0%
! GGGTGTTATACTTTCCCTTG+AGG - chr3_2:9008149-9008168 Msa0394400:intron 45.0%
!! CAGGAGCTTGCTAATAGAGT+TGG + chr3_2:9008531-9008550 None:intergenic 45.0%
CAACTCTATTAGCAAGCTCC+TGG - chr3_2:9008529-9008548 Msa0394400:intron 45.0%
ATTAGCAAGCTCCTGGACAT+TGG - chr3_2:9008536-9008555 Msa0394400:intron 45.0%
TCAAAGCTCTCTTCCCTCAA+TGG + chr3_2:9006758-9006777 None:intergenic 45.0%
!! AGGGAAGAGAGCTTTGAAGT+GGG - chr3_2:9006761-9006780 Msa0394400:CDS 45.0%
!! GAGCTTTGGAATCAACCTTG+AGG - chr3_2:9006792-9006811 Msa0394400:CDS 45.0%
ATTCTCTTGATTAGGGGCTG+TGG - chr3_2:9007049-9007068 Msa0394400:intron 45.0%
GTCGTCTCTTGTGACAAGAA+AGG + chr3_2:9010749-9010768 None:intergenic 45.0%
TTCTTGTCACAAGAGACGAC+GGG - chr3_2:9010749-9010768 Msa0394400:intron 45.0%
CCGATTGAACCACAAACCAA+AGG - chr3_2:9011349-9011368 Msa0394400:intron 45.0%
AATCAAACCGGTGAAGCCTT+TGG + chr3_2:9011368-9011387 None:intergenic 45.0%
AATGAAGTGTGCCTTCTTGC+AGG - chr3_2:9011416-9011435 Msa0394400:intron 45.0%
!!! TCTGTGTTGTTTTGAGCTGC+AGG + chr3_2:9011469-9011488 None:intergenic 45.0%
AAAGGGAGGACAACACTTGA+AGG - chr3_2:9011511-9011530 Msa0394400:intron 45.0%
AAGGGAGGACAACACTTGAA+GGG - chr3_2:9011512-9011531 Msa0394400:intron 45.0%
TTAGTATAAGGTTGCCACGC+AGG + chr3_2:9011666-9011685 None:intergenic 45.0%
TGCGTGGCAACCTTATACTA+AGG - chr3_2:9011665-9011684 Msa0394400:intron 45.0%
GCGTGGCAACCTTATACTAA+GGG - chr3_2:9011666-9011685 Msa0394400:intron 45.0%
ATACTAAGGGCAGGTAAGAG+AGG - chr3_2:9011679-9011698 Msa0394400:intron 45.0%
GGGGAGATATGACATACTCT+TGG + chr3_2:9011807-9011826 None:intergenic 45.0%
! CAAAATTGGAGAGAAGGCAC+GGG + chr3_2:9011833-9011852 None:intergenic 45.0%
!! AAATACAAATAAAATAAAAT+CGG + chr3_2:9011305-9011324 None:intergenic 5.0%
TGAGAGAGAGAGAGAGAGAG+AGG + chr3_2:9006715-9006734 None:intergenic 50.0%
!! GAGGGAAGAGAGCTTTGAAG+TGG - chr3_2:9006760-9006779 Msa0394400:CDS 50.0%
!! AGCTTTGAAGTGGGTGCTCT+TGG - chr3_2:9006770-9006789 Msa0394400:CDS 50.0%
!! GAGGGAAGAGAGCTTTGAAG+TGG - chr3_2:9006760-9006779 Msa0394400:CDS 50.0%
AGTGGGTGCTCTTTGAGCTT+TGG - chr3_2:9009450-9009469 Msa0394400:intron 50.0%
ATTCAACACCAGCGAAGCGT+TGG + chr3_2:9010504-9010523 None:intergenic 50.0%
! GTCACTAGAAGCGCGTGAAT+TGG - chr3_2:9011274-9011293 Msa0394400:intron 50.0%
CCACAAACCAAAGGCTTCAC+CGG - chr3_2:9011358-9011377 Msa0394400:intron 50.0%
! GGTATCTTTTCCTACCTGCG+TGG - chr3_2:9011649-9011668 Msa0394400:intron 50.0%
TATAAGGTTGCCACGCAGGT+AGG + chr3_2:9011662-9011681 None:intergenic 50.0%
GGCAACCTTATACTAAGGGC+AGG - chr3_2:9011670-9011689 Msa0394400:intron 50.0%
GCGAGAGAGAAGAGAAGGTC+TGG + chr3_2:9006688-9006707 None:intergenic 55.0%
AGTGGGTGCTCTTGGAGCTT+TGG - chr3_2:9006778-9006797 Msa0394400:CDS 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr3_2:9007929-9007948 Msa0394400:intron 55.0%
CAGGTTCCGGGAACACCATT+TGG + chr3_2:9007999-9008018 None:intergenic 55.0%
GTTCCCGGAACCTGCATATG+CGG - chr3_2:9008005-9008024 Msa0394400:intron 55.0%
TTCCCGGAACCTGCATATGC+GGG - chr3_2:9008006-9008025 Msa0394400:intron 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr3_2:9008018-9008037 None:intergenic 55.0%
GCGAGAGAGAAGAGAAGGTC+TGG + chr3_2:9006688-9006707 None:intergenic 55.0%
TCGCACATGCACACACACGT+AGG - chr3_2:9010934-9010953 Msa0394400:intron 55.0%
CGCACATGCACACACACGTA+GGG - chr3_2:9010935-9010954 Msa0394400:intron 55.0%
!! CCGGTGAAGCCTTTGGTTTG+TGG + chr3_2:9011361-9011380 None:intergenic 55.0%
! TGGAGAGAAGGCACGGGAAT+GGG + chr3_2:9011827-9011846 None:intergenic 55.0%
! TTGGAGAGAAGGCACGGGAA+TGG + chr3_2:9011828-9011847 None:intergenic 55.0%
GACGCGCGAGAGAGAAGAGA+AGG + chr3_2:9006693-9006712 None:intergenic 60.0%
CTCCCGCATATGCAGGTTCC+GGG + chr3_2:9008011-9008030 None:intergenic 60.0%
GCTCCCGCATATGCAGGTTC+CGG + chr3_2:9008012-9008031 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr3_2:9008022-9008041 Msa0394400:intron 60.0%
GACGCGCGAGAGAGAAGAGA+AGG + chr3_2:9006693-9006712 None:intergenic 60.0%
GTGTGTGTGCATGTGCGAGC+GGG + chr3_2:9010932-9010951 None:intergenic 60.0%
CGTGTGTGTGCATGTGCGAG+CGG + chr3_2:9010933-9010952 None:intergenic 60.0%
! GGAGAGAAGGCACGGGAATG+GGG + chr3_2:9011826-9011845 None:intergenic 60.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr3_2:9008023-9008042 Msa0394400:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 9006650 9011855 9006650 ID=Msa0394400;Name=Msa0394400
chr3_2 mRNA 9006650 9011855 9006650 ID=Msa0394400-mRNA-1;Parent=Msa0394400;Name=Msa0394400-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|0|0.5|2|0|166
chr3_2 exon 9011692 9011855 9011692 ID=Msa0394400-mRNA-1:exon:2398;Parent=Msa0394400-mRNA-1
chr3_2 exon 9006650 9006986 9006650 ID=Msa0394400-mRNA-1:exon:2397;Parent=Msa0394400-mRNA-1
chr3_2 CDS 9011692 9011855 9011692 ID=Msa0394400-mRNA-1:cds;Parent=Msa0394400-mRNA-1
chr3_2 CDS 9006650 9006986 9006650 ID=Msa0394400-mRNA-1:cds;Parent=Msa0394400-mRNA-1
Gene Sequence

>Msa0394400

ATGGCAAAAAGGGGCAAAAAGGTGTGGAAAAAAAACCAGACCTTCTCTTCTCTCTCGCGCGTCCTCTCTCTCTCTCTCTCTCTCACCTACAAAAACAAAAATCTTCCATTGAGGGAAGAGAGCTTTGAAGTGGGTGCTCTTGGAGCTTTGGAATCAACCTTGAGGACAACACTTGAAGGGCAAAATAAAAAGTGTTTGGCACTTGTAGCTGATGAAACCGCTGCAATTCATTTACAACTTTGGGGAGATGAATGTGATTATTTTGATTCAGGTGACATCGTTTATATGACCAATGGTATCTTTTCCTACCTGCGTGGCAACCTTATACTAAGGGCAGGTAAGAGAGGAAAGCTTGAGAAGATAGGAGAATTTACTATGTCCTATGTTGAGACACCAAACATGAGTGAGATTCATTGGATTCCTGACCCAACAAATTCTAAGAAGTATATCCAAGAGTATGTCATATCTCCCCATTCCCGTGCCTTCTCTCCAATTTTGTAG

Protein sequence

>Msa0394400

MAKRGKKVWKKNQTFSSLSRVLSLSLSLTYKNKNLPLREESFEVGALGALESTLRTTLEGQNKKCLALVADETAAIHLQLWGDECDYFDSGDIVYMTNGIFSYLRGNLILRAGKRGKLEKIGEFTMSYVETPNMSEIHWIPDPTNSKKYIQEYVISPHSRAFSPIL*