Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125770 | XP_003591816.1 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 3.08e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125770 | sp|P32294|AX22B_VIGRR | 70.833 | 192 | 42 | 3 | 1 | 178 | 1 | 192 | 5.98e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125770 | G7I486 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 1.47e-124 | 357 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0125770 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0125770 | 0.812944 | 3.285122e-51 | -8.615850e-47 |
| Msa0011930 | Msa0125770 | 0.810059 | 1.391549e-50 | -8.615850e-47 |
| Msa0016670 | Msa0125770 | 0.804704 | 1.901291e-49 | -8.615850e-47 |
| Msa0030280 | Msa0125770 | 0.882029 | 1.466608e-70 | -8.615850e-47 |
| Msa0031820 | Msa0125770 | 0.803998 | 2.667845e-49 | -8.615850e-47 |
| Msa0036130 | Msa0125770 | 0.808070 | 3.710363e-50 | -8.615850e-47 |
| Msa0039250 | Msa0125770 | 0.828476 | 8.803785e-55 | -8.615850e-47 |
| Msa0052610 | Msa0125770 | 0.834933 | 2.250645e-56 | -8.615850e-47 |
| Msa0067870 | Msa0125770 | 0.818832 | 1.595741e-52 | -8.615850e-47 |
| Msa0070430 | Msa0125770 | 0.819051 | 1.422374e-52 | -8.615850e-47 |
| Msa0077880 | Msa0125770 | 0.903052 | 5.163903e-79 | -8.615850e-47 |
| Msa0094010 | Msa0125770 | 0.816347 | 5.795208e-52 | -8.615850e-47 |
| Msa0097850 | Msa0125770 | 0.808646 | 2.795912e-50 | -8.615850e-47 |
| Msa0098470 | Msa0125770 | 0.806239 | 9.058207e-50 | -8.615850e-47 |
| Msa0100800 | Msa0125770 | 0.812428 | 4.260872e-51 | -8.615850e-47 |
| Msa0101880 | Msa0125770 | 0.805294 | 1.430687e-49 | -8.615850e-47 |
| Msa0103240 | Msa0125770 | 0.827589 | 1.438924e-54 | -8.615850e-47 |
| Msa0108390 | Msa0125770 | 0.803589 | 3.243691e-49 | -8.615850e-47 |
| Msa0115370 | Msa0125770 | 0.803941 | 2.741215e-49 | -8.615850e-47 |
| Msa0125770 | Msa0126770 | 0.818082 | 2.359593e-52 | -8.615850e-47 |
| Msa0125770 | Msa0130240 | 0.825563 | 4.378717e-54 | -8.615850e-47 |
| Msa0125770 | Msa0133720 | 0.825436 | 4.691816e-54 | -8.615850e-47 |
| Msa0125770 | Msa0133820 | 0.815858 | 7.453186e-52 | -8.615850e-47 |
| Msa0125770 | Msa0138360 | 0.803892 | 2.806412e-49 | -8.615850e-47 |
| Msa0125770 | Msa0145070 | 0.808914 | 2.450789e-50 | -8.615850e-47 |
| Msa0125770 | Msa0147980 | 0.808093 | 3.668263e-50 | -8.615850e-47 |
| Msa0125770 | Msa0165440 | 0.820744 | 5.833565e-53 | -8.615850e-47 |
| Msa0125770 | Msa0166750 | 0.801415 | 9.102690e-49 | -8.615850e-47 |
| Msa0125770 | Msa0170410 | 0.854485 | 1.192990e-61 | -8.615850e-47 |
| Msa0125770 | Msa0171850 | 0.820866 | 5.469951e-53 | -8.615850e-47 |
| Msa0125770 | Msa0173890 | 0.806100 | 9.691288e-50 | -8.615850e-47 |
| Msa0125770 | Msa0181230 | 0.828661 | 7.940570e-55 | -8.615850e-47 |
| Msa0125770 | Msa0197520 | 0.820348 | 7.193914e-53 | -8.615850e-47 |
| Msa0125770 | Msa0198520 | 0.826426 | 2.730746e-54 | -8.615850e-47 |
| Msa0125770 | Msa0198530 | 0.825514 | 4.497331e-54 | -8.615850e-47 |
| Msa0125770 | Msa0207350 | 0.806549 | 7.793991e-50 | -8.615850e-47 |
| Msa0125770 | Msa0212750 | -0.800826 | 1.201137e-48 | -8.615850e-47 |
| Msa0125770 | Msa0222920 | 0.804037 | 2.618433e-49 | -8.615850e-47 |
| Msa0125770 | Msa0227400 | 0.800197 | 1.613735e-48 | -8.615850e-47 |
| Msa0125770 | Msa0230150 | 0.823360 | 1.444228e-53 | -8.615850e-47 |
| Msa0125770 | Msa0281430 | 0.836854 | 7.332902e-57 | -8.615850e-47 |
| Msa0125770 | Msa0358670 | 0.805361 | 1.385336e-49 | -8.615850e-47 |
| Msa0125770 | Msa0370160 | -0.818421 | 1.977634e-52 | -8.615850e-47 |
| Msa0125770 | Msa0387880 | -0.816468 | 5.445118e-52 | -8.615850e-47 |
| Msa0125770 | Msa0423900 | 0.804728 | 1.878876e-49 | -8.615850e-47 |
| Msa0125770 | Msa0431770 | 0.838036 | 3.651137e-57 | -8.615850e-47 |
| Msa0125770 | Msa0437510 | 0.829074 | 6.309046e-55 | -8.615850e-47 |
| Msa0125770 | Msa0437690 | -0.813241 | 2.827790e-51 | -8.615850e-47 |
| Msa0125770 | Msa0478580 | 0.806467 | 8.112223e-50 | -8.615850e-47 |
| Msa0125770 | Msa0479200 | 0.812340 | 4.454240e-51 | -8.615850e-47 |
| Msa0125770 | Msa0509950 | -0.806988 | 6.295700e-50 | -8.615850e-47 |
| Msa0125770 | Msa0515640 | 0.837031 | 6.605810e-57 | -8.615850e-47 |
| Msa0125770 | Msa0561430 | 0.810366 | 1.194626e-50 | -8.615850e-47 |
| Msa0125770 | Msa0578090 | 0.825573 | 4.355703e-54 | -8.615850e-47 |
| Msa0125770 | Msa0581690 | 0.817893 | 2.604202e-52 | -8.615850e-47 |
| Msa0125770 | Msa0583500 | 0.806662 | 7.376668e-50 | -8.615850e-47 |
| Msa0125770 | Msa0584550 | 0.828254 | 9.955304e-55 | -8.615850e-47 |
| Msa0125770 | Msa0586850 | 0.815607 | 8.475541e-52 | -8.615850e-47 |
| Msa0125770 | Msa0619510 | 0.808760 | 2.643599e-50 | -8.615850e-47 |
| Msa0125770 | Msa0626680 | 0.809890 | 1.512966e-50 | -8.615850e-47 |
| Msa0125770 | Msa0640500 | 0.827097 | 1.887916e-54 | -8.615850e-47 |
| Msa0125770 | Msa0648520 | 0.818699 | 1.710092e-52 | -8.615850e-47 |
| Msa0125770 | Msa0654870 | 0.808429 | 3.111025e-50 | -8.615850e-47 |
| Msa0125770 | Msa0664760 | 0.819295 | 1.251788e-52 | -8.615850e-47 |
| Msa0125770 | Msa0679100 | 0.807264 | 5.503360e-50 | -8.615850e-47 |
| Msa0125770 | Msa0691050 | 0.803528 | 3.338703e-49 | -8.615850e-47 |
| Msa0125770 | Msa0704660 | 0.812447 | 4.220729e-51 | -8.615850e-47 |
| Msa0125770 | Msa0716410 | 0.809441 | 1.889492e-50 | -8.615850e-47 |
| Msa0125770 | Msa0742510 | 0.815273 | 1.005950e-51 | -8.615850e-47 |
| Msa0125770 | Msa0744090 | 0.812352 | 4.427521e-51 | -8.615850e-47 |
| Msa0125770 | Msa0744100 | 0.805610 | 1.228541e-49 | -8.615850e-47 |
| Msa0125770 | Msa0750920 | 0.836686 | 8.091010e-57 | -8.615850e-47 |
| Msa0125770 | Msa0753770 | 0.820131 | 8.063750e-53 | -8.615850e-47 |
| Msa0125770 | Msa0779550 | 0.811990 | 5.309278e-51 | -8.615850e-47 |
| Msa0125770 | Msa0780930 | 0.811183 | 7.952968e-51 | -8.615850e-47 |
| Msa0125770 | Msa0788770 | 0.805504 | 1.293198e-49 | -8.615850e-47 |
| Msa0125770 | Msa0794050 | 0.804535 | 2.062038e-49 | -8.615850e-47 |
| Msa0125770 | Msa0800270 | 0.838956 | 2.112382e-57 | -8.615850e-47 |
| Msa0125770 | Msa0814250 | 0.800592 | 1.340572e-48 | -8.615850e-47 |
| Msa0125770 | Msa0818770 | 0.803189 | 3.925492e-49 | -8.615850e-47 |
| Msa0125770 | Msa0824640 | 0.815014 | 1.148297e-51 | -8.615850e-47 |
| Msa0125770 | Msa0825270 | 0.804193 | 2.429667e-49 | -8.615850e-47 |
| Msa0125770 | Msa0825280 | 0.816226 | 6.167523e-52 | -8.615850e-47 |
| Msa0125770 | Msa0838260 | 0.845289 | 4.457288e-59 | -8.615850e-47 |
| Msa0125770 | Msa0848530 | 0.809919 | 1.491466e-50 | -8.615850e-47 |
| Msa0125770 | Msa0851470 | 0.801635 | 8.205719e-49 | -8.615850e-47 |
| Msa0125770 | Msa0864010 | 0.818467 | 1.930910e-52 | -8.615850e-47 |
| Msa0125770 | Msa0869010 | 0.800537 | 1.375631e-48 | -8.615850e-47 |
| Msa0125770 | Msa0947530 | -0.806764 | 7.019578e-50 | -8.615850e-47 |
| Msa0125770 | Msa0955190 | 0.800793 | 1.219960e-48 | -8.615850e-47 |
| Msa0125770 | Msa1004420 | 0.810160 | 1.323352e-50 | -8.615850e-47 |
| Msa0125770 | Msa1030930 | 0.830828 | 2.356963e-55 | -8.615850e-47 |
| Msa0125770 | Msa1033660 | 0.831380 | 1.725211e-55 | -8.615850e-47 |
| Msa0125770 | Msa1041520 | 0.812833 | 3.475495e-51 | -8.615850e-47 |
| Msa0125770 | Msa1070050 | 0.818190 | 2.230483e-52 | -8.615850e-47 |
| Msa0125770 | Msa1079230 | 0.808035 | 3.773470e-50 | -8.615850e-47 |
| Msa0125770 | Msa1114040 | 0.801335 | 9.453922e-49 | -8.615850e-47 |
| Msa0125770 | Msa1127830 | 0.802210 | 6.249681e-49 | -8.615850e-47 |
| Msa0125770 | Msa1131560 | 0.801079 | 1.066269e-48 | -8.615850e-47 |
| Msa0125770 | Msa1143650 | 0.803539 | 3.322679e-49 | -8.615850e-47 |
| Msa0125770 | Msa1145240 | 0.813824 | 2.104680e-51 | -8.615850e-47 |
| Msa0125770 | Msa1152510 | 0.812068 | 5.105142e-51 | -8.615850e-47 |
| Msa0125770 | Msa1179980 | 0.804178 | 2.447034e-49 | -8.615850e-47 |
| Msa0125770 | Msa1188560 | 0.821997 | 2.998223e-53 | -8.615850e-47 |
| Msa0125770 | Msa1193950 | -0.806875 | 6.652186e-50 | -8.615850e-47 |
| Msa0125770 | Msa1199290 | 0.801244 | 9.867697e-49 | -8.615850e-47 |
| Msa0125770 | Msa1201830 | 0.803370 | 3.601237e-49 | -8.615850e-47 |
| Msa0125770 | Msa1208890 | -0.840302 | 9.439211e-58 | -8.615850e-47 |
| Msa0125770 | Msa1223330 | 0.813184 | 2.909974e-51 | -8.615850e-47 |
| Msa0125770 | Msa1226610 | 0.814725 | 1.330669e-51 | -8.615850e-47 |
| Msa0125770 | Msa1227690 | 0.805435 | 1.336538e-49 | -8.615850e-47 |
| Msa0125770 | Msa1245940 | -0.821566 | 3.771622e-53 | -8.615850e-47 |
| Msa0125770 | Msa1252850 | -0.832453 | 9.374580e-56 | -8.615850e-47 |
| Msa0125770 | Msa1253810 | 0.813782 | 2.150507e-51 | -8.615850e-47 |
| Msa0125770 | Msa1259070 | -0.821138 | 4.733676e-53 | -8.615850e-47 |
| Msa0125770 | Msa1262960 | 0.809505 | 1.830955e-50 | -8.615850e-47 |
| Msa0125770 | Msa1270620 | 0.802562 | 5.288576e-49 | -8.615850e-47 |
| Msa0125770 | Msa1270690 | 0.804117 | 2.520024e-49 | -8.615850e-47 |
| Msa0125770 | Msa1279140 | -0.832700 | 8.138990e-56 | -8.615850e-47 |
| Msa0125770 | Msa1283990 | 0.806798 | 6.905586e-50 | -8.615850e-47 |
| Msa0125770 | Msa1302060 | 0.835537 | 1.584240e-56 | -8.615850e-47 |
| Msa0125770 | Msa1306990 | 0.805746 | 1.150351e-49 | -8.615850e-47 |
| Msa0125770 | Msa1310690 | 0.810622 | 1.051996e-50 | -8.615850e-47 |
| Msa0125770 | Msa1311960 | 0.825609 | 4.269330e-54 | -8.615850e-47 |
| Msa0125770 | Msa1323050 | 0.801655 | 8.125660e-49 | -8.615850e-47 |
| Msa0125770 | Msa1333560 | 0.810748 | 9.877397e-51 | -8.615850e-47 |
| Msa0125770 | Msa1360180 | 0.820650 | 6.132578e-53 | -8.615850e-47 |
| Msa0125770 | Msa1372310 | 0.800202 | 1.609859e-48 | -8.615850e-47 |
| Msa0125770 | Msa1373330 | 0.802313 | 5.952878e-49 | -8.615850e-47 |
| Msa0125770 | Msa1373820 | 0.806507 | 7.955939e-50 | -8.615850e-47 |
| Msa0125770 | Msa1380970 | 0.821636 | 3.633637e-53 | -8.615850e-47 |
| Msa0125770 | Msa1386710 | 0.806194 | 9.261880e-50 | -8.615850e-47 |
| Msa0125770 | Msa1400610 | -0.837380 | 5.378678e-57 | -8.615850e-47 |
| Msa0125770 | Msa1432480 | 0.800220 | 1.596615e-48 | -8.615850e-47 |
| Msa0125770 | Msa1449910 | 0.828104 | 1.082072e-54 | -8.615850e-47 |
| Msa0125770 | Msa1457400 | 0.814911 | 1.210731e-51 | -8.615850e-47 |
| Msa0125770 | Msa1461490 | 0.813033 | 3.140601e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125770 | MtrunA17_Chr1g0187961 | 97.753 | 178 | 4 | 0 | 1 | 178 | 1 | 178 | 2.83e-128 | 357 |
| Msa0125770 | MtrunA17_Chr1g0166011 | 74.176 | 182 | 33 | 3 | 11 | 178 | 1 | 182 | 6.08e-93 | 268 |
| Msa0125770 | MtrunA17_Chr1g0184801 | 59.701 | 201 | 58 | 5 | 1 | 178 | 1 | 201 | 3.78e-80 | 236 |
| Msa0125770 | MtrunA17_Chr7g0260621 | 56.477 | 193 | 57 | 5 | 11 | 178 | 11 | 201 | 1.16e-72 | 217 |
| Msa0125770 | MtrunA17_Chr6g0486121 | 42.174 | 230 | 73 | 5 | 9 | 178 | 13 | 242 | 5.98e-53 | 169 |
| Msa0125770 | MtrunA17_Chr1g0187921 | 45.622 | 217 | 69 | 6 | 11 | 178 | 8 | 224 | 7.69e-52 | 166 |
| Msa0125770 | MtrunA17_Chr1g0190711 | 42.291 | 227 | 72 | 6 | 11 | 178 | 15 | 241 | 1.65e-49 | 160 |
| Msa0125770 | MtrunA17_Chr7g0260641 | 49.153 | 177 | 63 | 5 | 28 | 178 | 63 | 238 | 2.76e-48 | 157 |
| Msa0125770 | MtrunA17_Chr5g0411501 | 45.304 | 181 | 68 | 4 | 29 | 178 | 143 | 323 | 1.07e-47 | 158 |
| Msa0125770 | MtrunA17_Chr1g0184791 | 41.892 | 222 | 64 | 6 | 16 | 178 | 18 | 233 | 1.57e-47 | 155 |
| Msa0125770 | MtrunA17_Chr8g0366881 | 47.159 | 176 | 64 | 5 | 29 | 178 | 164 | 336 | 1.16e-45 | 153 |
| Msa0125770 | MtrunA17_Chr5g0428141 | 47.126 | 174 | 62 | 5 | 30 | 178 | 167 | 335 | 1.24e-45 | 153 |
| Msa0125770 | MtrunA17_Chr2g0331411 | 53.020 | 149 | 43 | 4 | 57 | 178 | 166 | 314 | 1.85e-45 | 152 |
| Msa0125770 | MtrunA17_Chr8g0390281 | 47.802 | 182 | 66 | 6 | 26 | 178 | 100 | 281 | 3.01e-44 | 148 |
| Msa0125770 | MtrunA17_Chr4g0004181 | 46.746 | 169 | 81 | 4 | 11 | 178 | 6 | 166 | 2.77e-41 | 137 |
| Msa0125770 | MtrunA17_Chr2g0332141 | 58.065 | 93 | 30 | 3 | 87 | 170 | 8 | 100 | 4.63e-30 | 106 |
| Msa0125770 | MtrunA17_Chr1g0183251 | 33.333 | 177 | 57 | 4 | 62 | 178 | 81 | 256 | 2.61e-26 | 100 |
| Msa0125770 | MtrunA17_Chr8g0340731 | 36.420 | 162 | 57 | 5 | 55 | 174 | 103 | 260 | 3.68e-25 | 98.2 |
| Msa0125770 | MtrunA17_Chr4g0069561 | 37.984 | 129 | 77 | 2 | 48 | 175 | 58 | 184 | 3.90e-25 | 95.9 |
| Msa0125770 | MtrunA17_Chr2g0330951 | 33.721 | 172 | 65 | 4 | 50 | 174 | 85 | 254 | 1.28e-24 | 96.7 |
| Msa0125770 | MtrunA17_Chr1g0193861 | 43.820 | 89 | 49 | 1 | 84 | 171 | 82 | 170 | 1.49e-19 | 81.3 |
| Msa0125770 | MtrunA17_Chr7g0270851 | 40.426 | 94 | 55 | 1 | 79 | 171 | 62 | 155 | 9.76e-19 | 78.6 |
| Msa0125770 | MtrunA17_Chr3g0137601 | 31.538 | 130 | 69 | 3 | 64 | 178 | 89 | 213 | 1.34e-18 | 79.3 |
| Msa0125770 | MtrunA17_Chr4g0064131 | 30.579 | 121 | 63 | 3 | 64 | 171 | 93 | 205 | 2.21e-16 | 73.6 |
| Msa0125770 | MtrunA17_Chr1g0209181 | 37.607 | 117 | 62 | 4 | 64 | 171 | 54 | 168 | 2.29e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125770 | AT5G43700.1 | 62.295 | 183 | 62 | 3 | 1 | 178 | 1 | 181 | 7.34e-77 | 228 |
| Msa0125770 | AT1G04240.1 | 60.773 | 181 | 58 | 4 | 11 | 178 | 5 | 185 | 1.18e-76 | 227 |
| Msa0125770 | AT1G04240.2 | 60.773 | 181 | 58 | 4 | 11 | 178 | 105 | 285 | 8.45e-76 | 229 |
| Msa0125770 | AT3G23030.1 | 60.112 | 178 | 53 | 4 | 5 | 175 | 1 | 167 | 2.64e-69 | 208 |
| Msa0125770 | AT3G23030.2 | 59.777 | 179 | 54 | 4 | 4 | 175 | 87 | 254 | 8.44e-69 | 210 |
| Msa0125770 | AT4G14560.1 | 60.479 | 167 | 59 | 3 | 9 | 175 | 5 | 164 | 3.87e-65 | 197 |
| Msa0125770 | AT3G04730.1 | 45.089 | 224 | 66 | 6 | 11 | 178 | 2 | 224 | 1.25e-53 | 171 |
| Msa0125770 | AT4G14550.2 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 9.07e-53 | 168 |
| Msa0125770 | AT4G14550.1 | 46.759 | 216 | 67 | 8 | 11 | 178 | 1 | 216 | 1.34e-52 | 167 |
| Msa0125770 | AT1G04250.1 | 43.721 | 215 | 72 | 5 | 10 | 178 | 6 | 217 | 1.73e-51 | 165 |
| Msa0125770 | AT3G23050.1 | 44.889 | 225 | 67 | 8 | 11 | 178 | 6 | 230 | 1.90e-51 | 165 |
| Msa0125770 | AT4G29080.1 | 42.248 | 258 | 61 | 8 | 9 | 178 | 36 | 293 | 1.44e-50 | 165 |
| Msa0125770 | AT3G15540.1 | 45.989 | 187 | 76 | 5 | 11 | 177 | 6 | 187 | 5.11e-45 | 147 |
| Msa0125770 | AT1G15580.1 | 49.419 | 172 | 70 | 6 | 9 | 177 | 6 | 163 | 3.19e-44 | 144 |
| Msa0125770 | AT1G52830.1 | 45.556 | 180 | 83 | 5 | 11 | 177 | 6 | 183 | 1.34e-42 | 141 |
| Msa0125770 | AT2G22670.5 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.59e-42 | 144 |
| Msa0125770 | AT2G22670.2 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.59e-42 | 144 |
| Msa0125770 | AT2G22670.3 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.80e-42 | 144 |
| Msa0125770 | AT2G22670.1 | 47.468 | 158 | 56 | 4 | 48 | 178 | 150 | 307 | 2.80e-42 | 144 |
| Msa0125770 | AT2G22670.4 | 47.468 | 158 | 56 | 4 | 48 | 178 | 167 | 324 | 3.11e-42 | 144 |
| Msa0125770 | AT5G65670.1 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 2.63e-41 | 142 |
| Msa0125770 | AT5G65670.2 | 50.345 | 145 | 46 | 4 | 60 | 178 | 180 | 324 | 3.15e-41 | 141 |
| Msa0125770 | AT4G14550.3 | 43.590 | 195 | 62 | 8 | 11 | 157 | 1 | 195 | 4.71e-40 | 134 |
| Msa0125770 | AT3G23050.2 | 41.463 | 205 | 63 | 8 | 11 | 158 | 6 | 210 | 2.39e-38 | 130 |
| Msa0125770 | AT4G28640.1 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.95e-30 | 111 |
| Msa0125770 | AT4G28640.3 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 2.37e-30 | 111 |
| Msa0125770 | AT2G33310.3 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.74e-30 | 111 |
| Msa0125770 | AT2G33310.1 | 38.587 | 184 | 64 | 6 | 44 | 178 | 47 | 230 | 2.74e-30 | 111 |
| Msa0125770 | AT4G28640.2 | 39.881 | 168 | 63 | 5 | 48 | 177 | 73 | 240 | 1.36e-29 | 110 |
| Msa0125770 | AT2G33310.2 | 38.378 | 185 | 64 | 6 | 44 | 178 | 47 | 231 | 2.04e-29 | 108 |
| Msa0125770 | AT1G04550.2 | 35.754 | 179 | 74 | 4 | 40 | 178 | 46 | 223 | 5.74e-29 | 107 |
| Msa0125770 | AT3G16500.2 | 31.336 | 217 | 93 | 6 | 14 | 174 | 36 | 252 | 4.01e-27 | 103 |
| Msa0125770 | AT3G16500.1 | 31.140 | 228 | 97 | 7 | 7 | 174 | 25 | 252 | 4.26e-27 | 103 |
| Msa0125770 | AT5G25890.1 | 35.057 | 174 | 87 | 6 | 14 | 175 | 5 | 164 | 3.86e-26 | 98.6 |
| Msa0125770 | AT4G14550.4 | 42.384 | 151 | 51 | 7 | 11 | 125 | 1 | 151 | 7.56e-26 | 98.2 |
| Msa0125770 | AT1G51950.1 | 33.333 | 213 | 88 | 7 | 14 | 174 | 40 | 250 | 1.67e-25 | 99.4 |
| Msa0125770 | AT3G17600.1 | 38.710 | 124 | 62 | 3 | 56 | 171 | 37 | 154 | 2.74e-25 | 95.9 |
| Msa0125770 | AT3G23050.3 | 40.123 | 162 | 52 | 7 | 11 | 127 | 6 | 167 | 9.09e-25 | 94.7 |
| Msa0125770 | AT1G04100.1 | 38.788 | 165 | 50 | 4 | 65 | 178 | 95 | 259 | 3.06e-24 | 95.9 |
| Msa0125770 | AT2G46990.1 | 44.186 | 86 | 48 | 0 | 86 | 171 | 85 | 170 | 2.30e-20 | 83.6 |
| Msa0125770 | AT3G62100.1 | 45.349 | 86 | 47 | 0 | 86 | 171 | 83 | 168 | 2.57e-20 | 83.6 |
| Msa0125770 | AT1G80390.1 | 40.171 | 117 | 60 | 3 | 12 | 124 | 15 | 125 | 1.80e-18 | 77.4 |
| Msa0125770 | AT2G46990.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 85 | 157 | 3.06e-15 | 69.7 |
| Msa0125770 | AT3G62100.2 | 45.205 | 73 | 40 | 0 | 86 | 158 | 83 | 155 | 1.01e-14 | 68.2 |
| Msa0125770 | AT4G32280.2 | 34.884 | 86 | 51 | 2 | 86 | 171 | 118 | 198 | 3.05e-13 | 65.5 |
| Msa0125770 | AT4G32280.1 | 34.884 | 86 | 51 | 2 | 86 | 171 | 160 | 240 | 9.16e-13 | 64.7 |
| Msa0125770 | AT2G01200.2 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.73e-11 | 60.5 |
| Msa0125770 | AT2G01200.1 | 38.614 | 101 | 59 | 2 | 76 | 175 | 89 | 187 | 1.73e-11 | 60.5 |
| Msa0125770 | AT1G15050.2 | 37.778 | 90 | 53 | 2 | 87 | 175 | 62 | 149 | 6.27e-11 | 58.2 |
Find 56 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACATTAATTAATTTC+TGG | 0.174082 | 1_3:+54390727 | Msa0125770:three_prime_UTR |
| TTACAAGAGGCTGAGGCTTC+TGG | 0.222165 | 1_3:+54390099 | Msa0125770:CDS |
| AACCTTTCTGCTTGTGTTAT+CGG | 0.235448 | 1_3:+54390581 | Msa0125770:three_prime_UTR |
| TTCTTCCTGTAAGATCTTAT+TGG | 0.258525 | 1_3:-54390072 | None:intergenic |
| AAGATTGATTTGAGGGTCTA+TGG | 0.290855 | 1_3:+54390165 | Msa0125770:CDS |
| TGCACAACTTCTTAAAGCTT+TGG | 0.324497 | 1_3:+54390194 | Msa0125770:CDS |
| CTATCTGAAGTTGTGCTCTA+AGG | 0.354793 | 1_3:+54390668 | Msa0125770:three_prime_UTR |
| CTTCTGAATTATTTGAAAGA+TGG | 0.355127 | 1_3:+54389741 | Msa0125770:exon |
| TAAATTTCTTTGTTATTGAA+TGG | 0.358362 | 1_3:+54390967 | Msa0125770:three_prime_UTR |
| TCCTTTGAAGTTTCAGTCAA+TGG | 0.366569 | 1_3:-54389877 | None:intergenic |
| GAATGAAAAGTGAAGTGTTT+TGG | 0.375005 | 1_3:+54390538 | Msa0125770:three_prime_UTR |
| CCTTAGGAAGATTGATTTGA+GGG | 0.380707 | 1_3:+54390158 | Msa0125770:CDS |
| ACTTGCAGGGCTAAGATAGT+AGG | 0.383062 | 1_3:+54390042 | Msa0125770:intron |
| TACAAGAGGCTGAGGCTTCT+GGG | 0.384427 | 1_3:+54390100 | Msa0125770:CDS |
| GAGTTAAGATTAGGACTTCC+AGG | 0.392283 | 1_3:+54389808 | Msa0125770:CDS |
| CCATCTTTATCTTCATATGT+AGG | 0.415484 | 1_3:-54390285 | None:intergenic |
| TTCTGGTTACTTTAGCATCT+AGG | 0.421644 | 1_3:+54390744 | Msa0125770:three_prime_UTR |
| TACGTGAAAGTGAGTTTAGA+TGG | 0.426163 | 1_3:+54390126 | Msa0125770:CDS |
| GGCCACCAATAAGATCTTAC+AGG | 0.438714 | 1_3:+54390067 | Msa0125770:CDS |
| CTTAGAGCACAACTTCAGAT+AGG | 0.438793 | 1_3:-54390667 | None:intergenic |
| GATGGTGATTGGATGTTAGT+TGG | 0.443053 | 1_3:+54390303 | Msa0125770:CDS |
| TAGATGGAGCTCCTTACCTT+AGG | 0.462831 | 1_3:+54390142 | Msa0125770:CDS |
| TTCCTGTAAGATCTTATTGG+TGG | 0.463988 | 1_3:-54390069 | None:intergenic |
| ACTGAAACTTCAAAGGATAG+TGG | 0.473190 | 1_3:+54389883 | Msa0125770:CDS |
| TCAAATGAAAGAGATAGAAA+AGG | 0.479155 | 1_3:+54390860 | Msa0125770:three_prime_UTR |
| ATGAAGATAAAGATGGTGAT+TGG | 0.480229 | 1_3:+54390292 | Msa0125770:CDS |
| CAAGAAAGAAAGTCCTTGTA+AGG | 0.484427 | 1_3:-54389718 | None:intergenic |
| AAGGCTACTGAGTTAAGATT+AGG | 0.488179 | 1_3:+54389799 | Msa0125770:CDS |
| TATCGGAAGAACTAAACAAA+TGG | 0.489024 | 1_3:+54390598 | Msa0125770:three_prime_UTR |
| ACCTTAGGAAGATTGATTTG+AGG | 0.502641 | 1_3:+54390157 | Msa0125770:CDS |
| GATGTTAAAGAGATGTGAGA+TGG | 0.505958 | 1_3:-54389661 | None:intergenic |
| CAAATGAAAGAGATAGAAAA+GGG | 0.511488 | 1_3:+54390861 | Msa0125770:three_prime_UTR |
| AAATCAATCTTCCTAAGGTA+AGG | 0.513222 | 1_3:-54390153 | None:intergenic |
| CTGAAGTTGTGCTCTAAGGA+AGG | 0.514838 | 1_3:+54390672 | Msa0125770:three_prime_UTR |
| CCCTCAAATCAATCTTCCTA+AGG | 0.515293 | 1_3:-54390158 | None:intergenic |
| TTCCGATAACACAAGCAGAA+AGG | 0.522135 | 1_3:-54390583 | None:intergenic |
| CCAGAAATTAATTAATGTTG+AGG | 0.525082 | 1_3:-54390727 | None:intergenic |
| TGTGCTCTAAGGAAGGGAAA+TGG | 0.525813 | 1_3:+54390679 | Msa0125770:three_prime_UTR |
| TGAAGTTGTGCTCTAAGGAA+GGG | 0.550378 | 1_3:+54390673 | Msa0125770:three_prime_UTR |
| ACAAGTGAATCAACCTTACA+AGG | 0.550779 | 1_3:+54389705 | Msa0125770:five_prime_UTR |
| CTTGCAGGGCTAAGATAGTA+GGG | 0.554533 | 1_3:+54390043 | Msa0125770:intron |
| GAACAGTTTACAAGAGGCTG+AGG | 0.558668 | 1_3:+54390092 | Msa0125770:CDS |
| ATATATGATGATAAAGGAGA+AGG | 0.564955 | 1_3:-54389611 | None:intergenic |
| TGTTAGTTGGAGATGTTCCA+TGG | 0.566837 | 1_3:+54390316 | Msa0125770:CDS |
| CCTACATATGAAGATAAAGA+TGG | 0.572828 | 1_3:+54390285 | Msa0125770:CDS |
| TGAGAATGATCTCAACATGA+AGG | 0.586923 | 1_3:+54389780 | Msa0125770:CDS |
| GATGGAAATACAAGAATGCA+AGG | 0.588783 | 1_3:-54389643 | None:intergenic |
| ACCATTGACTGAAACTTCAA+AGG | 0.590661 | 1_3:+54389876 | Msa0125770:CDS |
| ATTGATTTGAGGGTCTATGG+TGG | 0.593128 | 1_3:+54390168 | Msa0125770:CDS |
| CAGGAAGAACAGTTTACAAG+AGG | 0.599653 | 1_3:+54390086 | Msa0125770:CDS |
| AGTTAAGATTAGGACTTCCA+GGG | 0.616003 | 1_3:+54389809 | Msa0125770:CDS |
| GTTAGTTGGAGATGTTCCAT+GGG | 0.617620 | 1_3:+54390317 | Msa0125770:CDS |
| AGCATGTTCAAGTTAACCAT+AGG | 0.640019 | 1_3:+54390219 | Msa0125770:CDS |
| AAAAGACTAAGAATCATGAA+AGG | 0.648151 | 1_3:+54390471 | Msa0125770:CDS |
| ATGAAAGGAACAGAAGCTAG+AGG | 0.651214 | 1_3:+54390486 | Msa0125770:CDS |
| GCAGGGCTAAGATAGTAGGG+TGG | 0.770265 | 1_3:+54390046 | Msa0125770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_3:54389620-54389639 | None:intergenic | 10.0% |
| !!! | TATTTTATATATGATGATAA+AGG | - | chr1_3:54389620-54389639 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAAAAAATCAG+TGG | - | chr1_3:54390801-54390820 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_3:54390967-54390986 | Msa0125770:three_prime_UTR | 15.0% |
| !! | AGAAAAAAAAAAAAAATCAG+TGG | - | chr1_3:54390801-54390820 | None:intergenic | 15.0% |
| !!! | TAAATTTCTTTGTTATTGAA+TGG | + | chr1_3:54390967-54390986 | Msa0125770:three_prime_UTR | 15.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_3:54389980-54389999 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_3:54389979-54389998 | Msa0125770:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_3:54389980-54389999 | Msa0125770:intron | 20.0% |
| !! | TTTATAAGGTAGAAAGAAAA+AGG | - | chr1_3:54389980-54389999 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTACCTTATAA+AGG | + | chr1_3:54389979-54389998 | Msa0125770:intron | 20.0% |
| !!! | TTTTCTTTCTACCTTATAAA+GGG | + | chr1_3:54389980-54389999 | Msa0125770:intron | 20.0% |
| ! | CTTCTGAATTATTTGAAAGA+TGG | + | chr1_3:54389741-54389760 | Msa0125770:exon | 25.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_3:54389937-54389956 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_3:54390028-54390047 | Msa0125770:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_3:54390029-54390048 | Msa0125770:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_3:54390238-54390257 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_3:54390249-54390268 | Msa0125770:CDS | 25.0% |
| ! | GCATATATAGAGAGAAAAAA+AGG | - | chr1_3:54390350-54390369 | None:intergenic | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_3:54390471-54390490 | Msa0125770:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_3:54390730-54390749 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_3:54390727-54390746 | Msa0125770:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_3:54390860-54390879 | Msa0125770:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_3:54390861-54390880 | Msa0125770:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_3:54390912-54390931 | None:intergenic | 25.0% |
| ! | CTTCTGAATTATTTGAAAGA+TGG | + | chr1_3:54389741-54389760 | Msa0125770:exon | 25.0% |
| !! | ATCTTTTGAACTTACTTTGA+AGG | - | chr1_3:54389937-54389956 | None:intergenic | 25.0% |
| !!! | AGAATATTTTTTTGACTTGC+AGG | + | chr1_3:54390028-54390047 | Msa0125770:intron | 25.0% |
| !!! | GAATATTTTTTTGACTTGCA+GGG | + | chr1_3:54390029-54390048 | Msa0125770:intron | 25.0% |
| !!! | TTTTTCAGAATAATCACCTA+TGG | - | chr1_3:54390238-54390257 | None:intergenic | 25.0% |
| ! | TCTGAAAAAGAAGGTTATAA+AGG | + | chr1_3:54390249-54390268 | Msa0125770:CDS | 25.0% |
| ! | GCATATATAGAGAGAAAAAA+AGG | - | chr1_3:54390350-54390369 | None:intergenic | 25.0% |
| ! | AAAAGACTAAGAATCATGAA+AGG | + | chr1_3:54390471-54390490 | Msa0125770:CDS | 25.0% |
| ! | CCAGAAATTAATTAATGTTG+AGG | - | chr1_3:54390730-54390749 | None:intergenic | 25.0% |
| ! | CCTCAACATTAATTAATTTC+TGG | + | chr1_3:54390727-54390746 | Msa0125770:three_prime_UTR | 25.0% |
| ! | TCAAATGAAAGAGATAGAAA+AGG | + | chr1_3:54390860-54390879 | Msa0125770:three_prime_UTR | 25.0% |
| ! | CAAATGAAAGAGATAGAAAA+GGG | + | chr1_3:54390861-54390880 | Msa0125770:three_prime_UTR | 25.0% |
| ! | CATCAATACAAGAAAAAACT+TGG | - | chr1_3:54390912-54390931 | None:intergenic | 25.0% |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_3:54389934-54389953 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_3:54390075-54390094 | None:intergenic | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_3:54390156-54390175 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_3:54390240-54390259 | Msa0125770:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_3:54390288-54390307 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_3:54390285-54390304 | Msa0125770:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_3:54390292-54390311 | Msa0125770:CDS | 30.0% | |
| !! | GAATGAAAAGTGAAGTGTTT+TGG | + | chr1_3:54390538-54390557 | Msa0125770:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_3:54390598-54390617 | Msa0125770:three_prime_UTR | 30.0% | |
| !! | TTTTGAACTTACTTTGAAGG+AGG | - | chr1_3:54389934-54389953 | None:intergenic | 30.0% |
| TTCTTCCTGTAAGATCTTAT+TGG | - | chr1_3:54390075-54390094 | None:intergenic | 30.0% | |
| AAATCAATCTTCCTAAGGTA+AGG | - | chr1_3:54390156-54390175 | None:intergenic | 30.0% | |
| ! | GGTGATTATTCTGAAAAAGA+AGG | + | chr1_3:54390240-54390259 | Msa0125770:CDS | 30.0% |
| CCATCTTTATCTTCATATGT+AGG | - | chr1_3:54390288-54390307 | None:intergenic | 30.0% | |
| CCTACATATGAAGATAAAGA+TGG | + | chr1_3:54390285-54390304 | Msa0125770:CDS | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr1_3:54390292-54390311 | Msa0125770:CDS | 30.0% | |
| !! | GAATGAAAAGTGAAGTGTTT+TGG | + | chr1_3:54390538-54390557 | Msa0125770:three_prime_UTR | 30.0% |
| TATCGGAAGAACTAAACAAA+TGG | + | chr1_3:54390598-54390617 | Msa0125770:three_prime_UTR | 30.0% | |
| GATGGAAATACAAGAATGCA+AGG | - | chr1_3:54389646-54389665 | None:intergenic | 35.0% | |
| GATGTTAAAGAGATGTGAGA+TGG | - | chr1_3:54389664-54389683 | None:intergenic | 35.0% | |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_3:54389705-54389724 | Msa0125770:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_3:54389721-54389740 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_3:54389780-54389799 | Msa0125770:CDS | 35.0% | |
| AAGGCTACTGAGTTAAGATT+AGG | + | chr1_3:54389799-54389818 | Msa0125770:CDS | 35.0% | |
| AGTTAAGATTAGGACTTCCA+GGG | + | chr1_3:54389809-54389828 | Msa0125770:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_3:54389869-54389888 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_3:54389876-54389895 | Msa0125770:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_3:54389880-54389899 | None:intergenic | 35.0% |
| ACTGAAACTTCAAAGGATAG+TGG | + | chr1_3:54389883-54389902 | Msa0125770:CDS | 35.0% | |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_3:54389994-54390013 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_3:54390072-54390091 | None:intergenic | 35.0% | |
| TACGTGAAAGTGAGTTTAGA+TGG | + | chr1_3:54390126-54390145 | Msa0125770:CDS | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_3:54390157-54390176 | Msa0125770:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_3:54390158-54390177 | Msa0125770:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_3:54390165-54390184 | Msa0125770:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_3:54390194-54390213 | Msa0125770:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_3:54390219-54390238 | Msa0125770:CDS | 35.0% |
| AAAAAAAGGACTTACTCCCA+TGG | - | chr1_3:54390336-54390355 | None:intergenic | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_3:54390581-54390600 | Msa0125770:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_3:54390744-54390763 | Msa0125770:three_prime_UTR | 35.0% |
| GATGGAAATACAAGAATGCA+AGG | - | chr1_3:54389646-54389665 | None:intergenic | 35.0% | |
| GATGTTAAAGAGATGTGAGA+TGG | - | chr1_3:54389664-54389683 | None:intergenic | 35.0% | |
| ACAAGTGAATCAACCTTACA+AGG | + | chr1_3:54389705-54389724 | Msa0125770:five_prime_UTR | 35.0% | |
| CAAGAAAGAAAGTCCTTGTA+AGG | - | chr1_3:54389721-54389740 | None:intergenic | 35.0% | |
| TGAGAATGATCTCAACATGA+AGG | + | chr1_3:54389780-54389799 | Msa0125770:CDS | 35.0% | |
| AAGGCTACTGAGTTAAGATT+AGG | + | chr1_3:54389799-54389818 | Msa0125770:CDS | 35.0% | |
| AGTTAAGATTAGGACTTCCA+GGG | + | chr1_3:54389809-54389828 | Msa0125770:CDS | 35.0% | |
| ! | TTCAGTCAATGGTCTTTTGT+TGG | - | chr1_3:54389869-54389888 | None:intergenic | 35.0% |
| ! | ACCATTGACTGAAACTTCAA+AGG | + | chr1_3:54389876-54389895 | Msa0125770:CDS | 35.0% |
| !! | TCCTTTGAAGTTTCAGTCAA+TGG | - | chr1_3:54389880-54389899 | None:intergenic | 35.0% |
| ACTGAAACTTCAAAGGATAG+TGG | + | chr1_3:54389883-54389902 | Msa0125770:CDS | 35.0% | |
| ACATCATGCAACCCTTTATA+AGG | - | chr1_3:54389994-54390013 | None:intergenic | 35.0% | |
| TTCCTGTAAGATCTTATTGG+TGG | - | chr1_3:54390072-54390091 | None:intergenic | 35.0% | |
| TACGTGAAAGTGAGTTTAGA+TGG | + | chr1_3:54390126-54390145 | Msa0125770:CDS | 35.0% | |
| !! | ACCTTAGGAAGATTGATTTG+AGG | + | chr1_3:54390157-54390176 | Msa0125770:CDS | 35.0% |
| !! | CCTTAGGAAGATTGATTTGA+GGG | + | chr1_3:54390158-54390177 | Msa0125770:CDS | 35.0% |
| !! | AAGATTGATTTGAGGGTCTA+TGG | + | chr1_3:54390165-54390184 | Msa0125770:CDS | 35.0% |
| TGCACAACTTCTTAAAGCTT+TGG | + | chr1_3:54390194-54390213 | Msa0125770:CDS | 35.0% | |
| ! | AGCATGTTCAAGTTAACCAT+AGG | + | chr1_3:54390219-54390238 | Msa0125770:CDS | 35.0% |
| AAAAAAAGGACTTACTCCCA+TGG | - | chr1_3:54390336-54390355 | None:intergenic | 35.0% | |
| AACCTTTCTGCTTGTGTTAT+CGG | + | chr1_3:54390581-54390600 | Msa0125770:three_prime_UTR | 35.0% | |
| ! | TTCTGGTTACTTTAGCATCT+AGG | + | chr1_3:54390744-54390763 | Msa0125770:three_prime_UTR | 35.0% |
| GAGTTAAGATTAGGACTTCC+AGG | + | chr1_3:54389808-54389827 | Msa0125770:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_3:54389829-54389848 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_3:54390086-54390105 | Msa0125770:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_3:54390161-54390180 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_3:54390168-54390187 | Msa0125770:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_3:54390303-54390322 | Msa0125770:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_3:54390316-54390335 | Msa0125770:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_3:54390317-54390336 | Msa0125770:CDS | 40.0% | |
| ATGAAAGGAACAGAAGCTAG+AGG | + | chr1_3:54390486-54390505 | Msa0125770:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_3:54390546-54390565 | Msa0125770:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_3:54390547-54390566 | Msa0125770:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_3:54390586-54390605 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_3:54390670-54390689 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_3:54390668-54390687 | Msa0125770:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_3:54390673-54390692 | Msa0125770:three_prime_UTR | 40.0% |
| GAGTTAAGATTAGGACTTCC+AGG | + | chr1_3:54389808-54389827 | Msa0125770:CDS | 40.0% | |
| ! | TCTTCATTTTGTTCTGTCCC+TGG | - | chr1_3:54389829-54389848 | None:intergenic | 40.0% |
| CAGGAAGAACAGTTTACAAG+AGG | + | chr1_3:54390086-54390105 | Msa0125770:CDS | 40.0% | |
| CCCTCAAATCAATCTTCCTA+AGG | - | chr1_3:54390161-54390180 | None:intergenic | 40.0% | |
| !! | ATTGATTTGAGGGTCTATGG+TGG | + | chr1_3:54390168-54390187 | Msa0125770:CDS | 40.0% |
| GATGGTGATTGGATGTTAGT+TGG | + | chr1_3:54390303-54390322 | Msa0125770:CDS | 40.0% | |
| TGTTAGTTGGAGATGTTCCA+TGG | + | chr1_3:54390316-54390335 | Msa0125770:CDS | 40.0% | |
| GTTAGTTGGAGATGTTCCAT+GGG | + | chr1_3:54390317-54390336 | Msa0125770:CDS | 40.0% | |
| ATGAAAGGAACAGAAGCTAG+AGG | + | chr1_3:54390486-54390505 | Msa0125770:CDS | 40.0% | |
| !!! | AGTGAAGTGTTTTGGTGTGA+AGG | + | chr1_3:54390546-54390565 | Msa0125770:three_prime_UTR | 40.0% |
| !!! | GTGAAGTGTTTTGGTGTGAA+GGG | + | chr1_3:54390547-54390566 | Msa0125770:three_prime_UTR | 40.0% |
| TTCCGATAACACAAGCAGAA+AGG | - | chr1_3:54390586-54390605 | None:intergenic | 40.0% | |
| CTTAGAGCACAACTTCAGAT+AGG | - | chr1_3:54390670-54390689 | None:intergenic | 40.0% | |
| ! | CTATCTGAAGTTGTGCTCTA+AGG | + | chr1_3:54390668-54390687 | Msa0125770:three_prime_UTR | 40.0% |
| !! | TGAAGTTGTGCTCTAAGGAA+GGG | + | chr1_3:54390673-54390692 | Msa0125770:three_prime_UTR | 40.0% |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_3:54390042-54390061 | Msa0125770:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_3:54390043-54390062 | Msa0125770:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_3:54390067-54390086 | Msa0125770:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_3:54390092-54390111 | Msa0125770:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_3:54390142-54390161 | Msa0125770:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_3:54390672-54390691 | Msa0125770:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_3:54390679-54390698 | Msa0125770:three_prime_UTR | 45.0% |
| ACTTGCAGGGCTAAGATAGT+AGG | + | chr1_3:54390042-54390061 | Msa0125770:intron | 45.0% | |
| CTTGCAGGGCTAAGATAGTA+GGG | + | chr1_3:54390043-54390062 | Msa0125770:intron | 45.0% | |
| GGCCACCAATAAGATCTTAC+AGG | + | chr1_3:54390067-54390086 | Msa0125770:CDS | 45.0% | |
| GAACAGTTTACAAGAGGCTG+AGG | + | chr1_3:54390092-54390111 | Msa0125770:CDS | 45.0% | |
| TAGATGGAGCTCCTTACCTT+AGG | + | chr1_3:54390142-54390161 | Msa0125770:CDS | 45.0% | |
| !! | CTGAAGTTGTGCTCTAAGGA+AGG | + | chr1_3:54390672-54390691 | Msa0125770:three_prime_UTR | 45.0% |
| !! | TGTGCTCTAAGGAAGGGAAA+TGG | + | chr1_3:54390679-54390698 | Msa0125770:three_prime_UTR | 45.0% |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_3:54390099-54390118 | Msa0125770:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_3:54390100-54390119 | Msa0125770:CDS | 50.0% | |
| TTACAAGAGGCTGAGGCTTC+TGG | + | chr1_3:54390099-54390118 | Msa0125770:CDS | 50.0% | |
| TACAAGAGGCTGAGGCTTCT+GGG | + | chr1_3:54390100-54390119 | Msa0125770:CDS | 50.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_3:54390046-54390065 | Msa0125770:intron | 55.0% | |
| GCAGGGCTAAGATAGTAGGG+TGG | + | chr1_3:54390046-54390065 | Msa0125770:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54389614 | 54391012 | 54389614 | ID=Msa0125770;Name=Msa0125770 |
| chr1_3 | mRNA | 54389614 | 54391012 | 54389614 | ID=Msa0125770-mRNA-1;Parent=Msa0125770;Name=Msa0125770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=146|1|1|1|1|1|3|497|178 |
| chr1_3 | exon | 54389614 | 54389941 | 54389614 | ID=Msa0125770-mRNA-1:exon:16792;Parent=Msa0125770-mRNA-1 |
| chr1_3 | exon | 54390050 | 54390340 | 54390050 | ID=Msa0125770-mRNA-1:exon:16793;Parent=Msa0125770-mRNA-1 |
| chr1_3 | exon | 54390452 | 54391012 | 54390452 | ID=Msa0125770-mRNA-1:exon:16794;Parent=Msa0125770-mRNA-1 |
| chr1_3 | five_prime_UTR | 54389614 | 54389759 | 54389614 | ID=Msa0125770-mRNA-1:five_prime_utr;Parent=Msa0125770-mRNA-1 |
| chr1_3 | CDS | 54389760 | 54389941 | 54389760 | ID=Msa0125770-mRNA-1:cds;Parent=Msa0125770-mRNA-1 |
| chr1_3 | CDS | 54390050 | 54390340 | 54390050 | ID=Msa0125770-mRNA-1:cds;Parent=Msa0125770-mRNA-1 |
| chr1_3 | CDS | 54390452 | 54390515 | 54390452 | ID=Msa0125770-mRNA-1:cds;Parent=Msa0125770-mRNA-1 |
| chr1_3 | three_prime_UTR | 54390516 | 54391012 | 54390516 | ID=Msa0125770-mRNA-1:three_prime_utr;Parent=Msa0125770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
