AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1223870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223870 MtrunA17_Chr4g0075761 98.416 884 11 2 1 884 1 881 0.0 1806
Msa1223870 MtrunA17_Chr2g0289951 68.966 290 87 2 595 883 14 301 2.53e-135 405
Msa1223870 MtrunA17_Chr2g0289901 63.551 321 83 3 595 883 14 332 7.69e-133 400
Msa1223870 MtrunA17_Chr2g0289941 42.960 554 261 11 83 612 12 534 2.29e-130 402
Msa1223870 MtrunA17_Chr2g0289891 41.293 557 283 11 81 619 43 573 7.08e-117 368
Msa1223870 MtrunA17_Chr2g0289911 41.985 524 272 8 81 600 38 533 5.91e-114 359
Msa1223870 MtrunA17_Chr2g0289881 62.882 229 81 3 595 822 18 243 2.67e-87 278
Msa1223870 MtrunA17_Chr2g0289931 66.829 205 63 3 618 821 1 201 7.96e-85 270
Msa1223870 MtrunA17_Chr2g0289961 40.945 381 201 7 228 600 7 371 3.09e-77 256
Msa1223870 MtrunA17_Chr5g0427791 33.773 379 223 11 513 875 3281 3647 5.81e-53 202
Msa1223870 MtrunA17_Chr3g0132611 32.817 387 231 11 513 882 3287 3661 9.96e-52 198
Msa1223870 MtrunA17_Chr4g0052551 33.154 371 222 10 526 882 3379 3737 3.31e-50 193
Msa1223870 MtrunA17_Chr4g0052561 32.884 371 223 10 526 882 3400 3758 2.78e-49 190
Msa1223870 MtrunA17_Chr2g0293841 28.691 359 228 8 526 869 666 1011 1.78e-37 152
Msa1223870 MtrunA17_Chr2g0289871 73.171 82 22 0 802 883 1 82 2.07e-35 129
Msa1223870 MtrunA17_Chr2g0289921 69.512 82 25 0 802 883 1 82 3.15e-33 122
Msa1223870 MtrunA17_Chr7g0265431 25.000 384 260 7 513 878 771 1144 4.42e-32 135
Msa1223870 MtrunA17_Chr4g0037101 25.497 302 189 6 609 879 1581 1877 1.62e-16 85.1
Msa1223870 MtrunA17_Chr1g0181721 24.398 332 194 7 551 836 1179 1499 4.36e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1223870 AT4G12570.1 49.564 803 380 9 83 884 95 873 0.0 765
Msa1223870 AT1G55860.1 33.609 363 216 9 526 875 3323 3673 3.75e-50 193
Msa1223870 AT1G70320.1 33.609 363 216 9 526 875 3300 3650 9.93e-50 192
Msa1223870 AT3G17205.1 28.090 356 234 6 526 869 671 1016 1.67e-36 149
Msa1223870 AT3G17205.3 28.090 356 234 6 526 869 671 1016 1.67e-36 149
Msa1223870 AT3G17205.2 28.090 356 234 6 526 869 657 1002 1.83e-36 149
Msa1223870 AT3G53090.1 24.932 365 246 7 523 869 775 1129 8.66e-31 131
Msa1223870 AT3G53090.2 24.932 365 246 7 523 869 775 1129 8.66e-31 131
Msa1223870 AT5G02880.1 25.956 366 223 11 553 879 1142 1498 3.02e-18 90.9
Msa1223870 AT5G02880.2 25.862 348 210 11 553 861 1142 1480 4.43e-17 87.0
Msa1223870 AT4G38600.2 24.752 303 186 8 609 879 1498 1790 7.30e-13 73.6
Msa1223870 AT1G53930.1 37.634 93 55 2 64 156 69 158 3.88e-11 62.8

Find 196 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTTCGCAAAATTT+AGG 0.140874 8_1:+88491297 None:intergenic
AGAAATCTTGTTCGATCTTT+TGG 0.167292 8_1:+88489138 None:intergenic
GCTTACTACTTATATTAATT+TGG 0.175687 8_1:-88490321 Msa1223870:CDS
CTTGTATGTTTCACCTTATA+CGG 0.191170 8_1:-88490207 Msa1223870:CDS
ACTGCGTGCTGGACTGTTTA+TGG 0.197538 8_1:-88489265 Msa1223870:CDS
TTGAAGGCAAGTATCAATTT+TGG 0.207942 8_1:+88489674 None:intergenic
ATCTTGGTCAAATGTTTATA+TGG 0.240608 8_1:-88485312 Msa1223870:three_prime_UTR
ATTGATTTCACTGTTTCTTC+TGG 0.253137 8_1:+88490599 None:intergenic
ATATTCAGATATCTTGGTTT+TGG 0.258128 8_1:-88487481 Msa1223870:CDS
TTGGATAAACATACCAGAAT+TGG 0.261658 8_1:+88489113 None:intergenic
TTTATGTCTTCTAAAGTAAT+AGG 0.263529 8_1:+88487914 None:intergenic
AAACAACTCTTCATTCTTCA+TGG 0.263574 8_1:-88490751 Msa1223870:CDS
TGATAGTTTGTTGAGGAATT+TGG 0.265690 8_1:-88489907 Msa1223870:CDS
CAAAGGGTTGGTGTTGGTTC+AGG 0.273096 8_1:-88489958 Msa1223870:CDS
GCAGAATCAGCATCAAGTTT+AGG 0.275846 8_1:+88490284 None:intergenic
TTCACCTTATACGGGGAATA+AGG 0.276380 8_1:-88490198 Msa1223870:CDS
TTCTCATTTCGCAAAATTTA+GGG 0.284524 8_1:+88491298 None:intergenic
ACAAGATTTCTCCCCAATTC+TGG 0.284588 8_1:-88489126 Msa1223870:intron
ATTAGAGAAGTGGAGGAATT+AGG 0.288826 8_1:-88487800 Msa1223870:CDS
GAACATATTGGCTCTAGTTT+TGG 0.291901 8_1:-88485518 Msa1223870:CDS
CCAGTTTCTTTCCAGATTGC+AGG 0.320682 8_1:+88485480 None:intergenic
TTGGCAAGTTGTTAATGATA+TGG 0.321662 8_1:-88490411 Msa1223870:CDS
AGTTGAAGGCTTTCGTGGTT+TGG 0.323282 8_1:-88485678 Msa1223870:CDS
AACTAGAGCCAATATGTTCT+TGG 0.327789 8_1:+88485522 None:intergenic
GTATGTTGATCTTCTTATAA+AGG 0.330723 8_1:-88487708 Msa1223870:CDS
GTTGAAGGCTTTCGTGGTTT+GGG 0.333475 8_1:-88485677 Msa1223870:CDS
TACTTATATTAATTTGGCTT+TGG 0.333864 8_1:-88490315 Msa1223870:CDS
TCAGCATCAAGTTTAGGTTT+AGG 0.350632 8_1:+88490290 None:intergenic
GTGAAATATTTACCAGTTGA+AGG 0.351097 8_1:-88485692 Msa1223870:CDS
TAGAAGCTGCAAGCAAATAT+TGG 0.351289 8_1:-88487870 Msa1223870:CDS
GCTGAGGGAGTGGTTTCTTT+TGG 0.351931 8_1:-88489208 Msa1223870:CDS
TGGATAAACATACCAGAATT+GGG 0.356070 8_1:+88489114 None:intergenic
ATGCCTCCTAGCTTCGAAAT+TGG 0.357538 8_1:+88489410 None:intergenic
TTCATTGATTCAGATGCATT+AGG 0.373706 8_1:-88487833 Msa1223870:CDS
CAAGCCTTATTCCCCGTATA+AGG 0.374779 8_1:+88490194 None:intergenic
ATTAATAATACAGGATTTGA+AGG 0.375239 8_1:-88485282 Msa1223870:three_prime_UTR
ACACAGATATTCAGATATCT+TGG 0.377507 8_1:-88487487 Msa1223870:CDS
AGTCCTCACAGGGACTAAAA+AGG 0.379202 8_1:+88489821 None:intergenic
TCTTGTTCTTGTCCTGCTGC+TGG 0.383862 8_1:+88489754 None:intergenic
TGCATTAGCTTTGATGCATA+AGG 0.385492 8_1:-88487990 Msa1223870:CDS
ATGCCATTTCCGTCGAAGAT+TGG 0.390215 8_1:-88487541 Msa1223870:CDS
TTAATAGATTTAACAGCGTC+AGG 0.391859 8_1:+88490350 None:intergenic
TGTAAATTGCTTAGTAGAGT+TGG 0.394201 8_1:-88490077 Msa1223870:CDS
CCTGCAATCTGGAAAGAAAC+TGG 0.394623 8_1:-88485480 Msa1223870:three_prime_UTR
AAGTTGTCAAAGTTCTGTTT+TGG 0.395384 8_1:-88485363 Msa1223870:three_prime_UTR
CAGTCCAGCACGCAGTGATT+CGG 0.396009 8_1:+88489272 None:intergenic
TTTAGCCATGATGATATTCC+CGG 0.399239 8_1:-88489388 Msa1223870:CDS
GTAAATTGCTTAGTAGAGTT+GGG 0.400275 8_1:-88490076 Msa1223870:CDS
TTTGCTTGCAGCTTCTATAT+AGG 0.404474 8_1:+88487876 None:intergenic
TTTCCAATCTTCGACGGAAA+TGG 0.407461 8_1:+88487538 None:intergenic
TTGTAGTTAATAGTAAGAAC+AGG 0.411643 8_1:-88487736 Msa1223870:CDS
TCGTAGTCTTCTTTCACCTC+CGG 0.415102 8_1:+88489369 None:intergenic
TAGAGTCTGAAGATCTTGAT+TGG 0.418715 8_1:-88487583 Msa1223870:CDS
TTCATTCGAATGATGTCAAA+AGG 0.419159 8_1:-88490647 Msa1223870:CDS
GACGCTAATCTTCACCTTGT+TGG 0.419467 8_1:-88490464 Msa1223870:CDS
ATTTACAAGTCCCATGAATC+TGG 0.421290 8_1:-88485641 Msa1223870:CDS
GACTGGAATCGAGCAGCAAC+AGG 0.428376 8_1:-88489802 Msa1223870:CDS
GGATAAAATATTAATAATAC+AGG 0.430551 8_1:-88485291 Msa1223870:three_prime_UTR
AGTCCAGCACGCAGTGATTC+GGG 0.431196 8_1:+88489273 None:intergenic
TGTAACATCCATAGCTGAGC+AGG 0.432078 8_1:-88487678 Msa1223870:CDS
TTATTATGATGATCAATTAA+CGG 0.432401 8_1:-88491004 Msa1223870:five_prime_UTR
ATTCGAATGAAGAAATGAAT+AGG 0.433080 8_1:+88490659 None:intergenic
GTCATTACCCAAGAACATAT+TGG 0.433530 8_1:-88485530 Msa1223870:CDS
TATTACTTTAGAAGACATAA+AGG 0.438867 8_1:-88487912 Msa1223870:CDS
ATAGCTGCTGGTTCGTCATC+GGG 0.438906 8_1:-88485231 Msa1223870:three_prime_UTR
GAAGACGATCACCAGATTCA+TGG 0.439105 8_1:+88485630 None:intergenic
AACCACTCCCTCAGCACACC+GGG 0.439249 8_1:+88489216 None:intergenic
GCAGGCTGCGCGTGTGGCGT+TGG 0.439975 8_1:-88490105 Msa1223870:CDS
CAAGGTAACAAGAACGGAAA+TGG 0.443734 8_1:+88490226 None:intergenic
TGGTGAACATACCTGCAATC+TGG 0.443889 8_1:-88485491 Msa1223870:exon
AACTTTGAAAGAAGAACTGC+TGG 0.445274 8_1:+88487606 None:intergenic
AAGATTTCTAAGCTTTATGA+TGG 0.447881 8_1:-88489552 Msa1223870:CDS
AAGAATCTCAGCAAAACCTT+TGG 0.455740 8_1:+88487643 None:intergenic
ACTAGAGCCAATATGTTCTT+GGG 0.457550 8_1:+88485523 None:intergenic
CGTAGTCTTCTTTCACCTCC+GGG 0.458862 8_1:+88489370 None:intergenic
TGCTCGATTCCAGTCCTCAC+AGG 0.460556 8_1:+88489810 None:intergenic
AAAGCACACACTGAGTATAA+TGG 0.464625 8_1:-88487518 Msa1223870:CDS
TGCAGCTTTGTACAGACTAT+AGG 0.464817 8_1:-88485425 Msa1223870:three_prime_UTR
AAATGTGTTATGTATACATT+TGG 0.465155 8_1:-88485149 Msa1223870:three_prime_UTR
GTTGGTTCTAGCGGCGGCGA+TGG 0.466611 8_1:-88490710 Msa1223870:CDS
CCCATCTGTTGTCCTCTAGT+TGG 0.470193 8_1:-88485397 Msa1223870:three_prime_UTR
ACATTCTAGTTAATAGCTGC+TGG 0.473413 8_1:-88485243 Msa1223870:three_prime_UTR
TCATGGACCGGTGGTGGTGG+TGG 0.473509 8_1:-88490734 Msa1223870:CDS
TTGCAGCTTCTATATAGGTC+AGG 0.476529 8_1:+88487881 None:intergenic
GAGGAATTTGGATTTGAGCT+TGG 0.478934 8_1:-88489895 Msa1223870:CDS
GAGATTCACTGACAAGGAAA+TGG 0.479101 8_1:-88489640 Msa1223870:CDS
TTAAGACGAGCTTGCATGAC+AGG 0.479167 8_1:+88485554 None:intergenic
CATTCTTCATGGACCGGTGG+TGG 0.480500 8_1:-88490740 Msa1223870:CDS
CTACTTGTTTAAAGCTTCCA+AGG 0.482863 8_1:-88488062 Msa1223870:intron
TTGTATGTTTCACCTTATAC+GGG 0.484986 8_1:-88490206 Msa1223870:CDS
AAACCACGAAAGCCTTCAAC+TGG 0.486764 8_1:+88485680 None:intergenic
TCTTCATGGACCGGTGGTGG+TGG 0.495795 8_1:-88490737 Msa1223870:CDS
TTACCAGTTGAAGGCTTTCG+TGG 0.496517 8_1:-88485683 Msa1223870:CDS
TAAAAGCATGTATGAGATGA+AGG 0.496856 8_1:+88485608 None:intergenic
CCACTGGCCCCGGTGTGCTG+AGG 0.499404 8_1:-88489224 Msa1223870:CDS
ATTGTTTATGATCTTTGTCA+TGG 0.500871 8_1:-88490383 Msa1223870:CDS
GATCCCGAATCACTGCGTGC+TGG 0.506030 8_1:-88489276 Msa1223870:CDS
GCCCCGGTGTGCTGAGGGAG+TGG 0.508642 8_1:-88489218 Msa1223870:CDS
AATGAAGAAGCCACTGGCCC+CGG 0.512967 8_1:-88489234 Msa1223870:CDS
AATAGCTGCTGGTTCGTCAT+CGG 0.516229 8_1:-88485232 Msa1223870:three_prime_UTR
CAGCAGGACAAGAACAAGAA+TGG 0.516630 8_1:-88489750 Msa1223870:CDS
TGACAAGGAAATGGTGTTTG+AGG 0.517234 8_1:-88489631 Msa1223870:CDS
AATGACAGCTGAAGAAAAGA+AGG 0.520042 8_1:-88485738 Msa1223870:CDS
AAGTGGAGGAATTAGGACAG+AGG 0.520577 8_1:-88487793 Msa1223870:CDS
ATGTCACCAATTTCGAAGCT+AGG 0.522617 8_1:-88489416 Msa1223870:CDS
TCTAGCGGCGGCGATGGTGG+TGG 0.527208 8_1:-88490704 Msa1223870:CDS
ATGCAGATTATGTTGTACCT+TGG 0.529364 8_1:+88488045 None:intergenic
AAAGCGATCCAGCTGTGTCC+TGG 0.529729 8_1:-88487770 Msa1223870:CDS
ACTCTTCATTCTTCATGGAC+CGG 0.530727 8_1:-88490746 Msa1223870:CDS
TGTTATGTATACATTTGGTC+TGG 0.532851 8_1:-88485144 None:intergenic
CAGGTTTCACACTTTGCCAA+AGG 0.533753 8_1:-88487659 Msa1223870:CDS
CAATGGTAAACAGCTTCAGT+GGG 0.535417 8_1:-88490519 Msa1223870:CDS
TCAGCAAGTTCACGAACAAA+CGG 0.535503 8_1:+88489927 None:intergenic
CTGCAAGCAAATATTGGAGA+TGG 0.535685 8_1:-88487864 Msa1223870:CDS
GTGTGAAACCTGCTCAGCTA+TGG 0.536035 8_1:+88487670 None:intergenic
TGCATGAGATGCTCATTGAC+AGG 0.536076 8_1:-88489341 Msa1223870:CDS
TCCTTTGTTGAACAATGTTG+AGG 0.537083 8_1:-88489853 Msa1223870:CDS
CTTGAGTACTTCAGCTTCTG+TGG 0.540272 8_1:-88488022 Msa1223870:CDS
TCAATGGTAAACAGCTTCAG+TGG 0.541769 8_1:-88490520 Msa1223870:CDS
CCTCAGCACACCGGGGCCAG+TGG 0.547426 8_1:+88489224 None:intergenic
ACAGGCATAGATGAATAAGC+TGG 0.547667 8_1:+88485572 None:intergenic
GGTTCTAGCGGCGGCGATGG+TGG 0.551455 8_1:-88490707 Msa1223870:CDS
GTCCAAGACGTTTCATACGC+AGG 0.552066 8_1:-88490123 Msa1223870:CDS
CGTATAAGGTGAAACATACA+AGG 0.552501 8_1:+88490208 None:intergenic
TGTTCTTGTCCTGCTGCTGG+TGG 0.552538 8_1:+88489757 None:intergenic
GAACGAATTGAAGAAATGAA+AGG 0.552557 8_1:-88490572 Msa1223870:CDS
ATCTTGATTGGATGCTGCGT+GGG 0.555503 8_1:-88487571 Msa1223870:CDS
CACCTCCGGGAATATCATCA+TGG 0.556440 8_1:+88489383 None:intergenic
TTAACAACTTGCCAAGCTTG+AGG 0.558690 8_1:+88490419 None:intergenic
TCATACGCAGGCTGCGCGTG+TGG 0.560611 8_1:-88490111 Msa1223870:CDS
TGTTCAACAAAGGATTAGCA+AGG 0.561790 8_1:+88489862 None:intergenic
AATTTCACTTGCGGCATCTG+AGG 0.561824 8_1:-88489991 Msa1223870:CDS
AGCTGCTGAAATTTCACTTG+CGG 0.565049 8_1:-88490000 Msa1223870:CDS
GTACAGAACATCCTCAAGCT+TGG 0.565129 8_1:-88490430 Msa1223870:CDS
TCCTCAACATTGTTCAACAA+AGG 0.565254 8_1:+88489852 None:intergenic
GGGACTTGTAAATGTGGAGA+CGG 0.565502 8_1:+88485651 None:intergenic
TGTTGCTTACCACCAGCAGC+AGG 0.565851 8_1:-88489766 Msa1223870:CDS
GGTGGTGGTGTTGGTTCTAG+CGG 0.566616 8_1:-88490719 Msa1223870:CDS
AACAAAGGATTAGCAAGGGA+AGG 0.567911 8_1:+88489867 None:intergenic
ACAAAGGATTAGCAAGGGAA+GGG 0.568402 8_1:+88489868 None:intergenic
GAATCACAAAGGGTTGGTGT+TGG 0.569578 8_1:-88489964 Msa1223870:CDS
GACGTTTATTAGAGAAGTGG+AGG 0.576387 8_1:-88487807 Msa1223870:CDS
TCCAACTAGAGGACAACAGA+TGG 0.577139 8_1:+88485396 None:intergenic
AAACCACTCCCTCAGCACAC+CGG 0.578474 8_1:+88489215 None:intergenic
CTGGTTCGTCATCGGGAGTG+TGG 0.578604 8_1:-88485224 Msa1223870:three_prime_UTR
GGATAAACATACCAGAATTG+GGG 0.580164 8_1:+88489115 None:intergenic
CTGAGGATGAGAATCACAAA+GGG 0.580618 8_1:-88489974 Msa1223870:CDS
AAGACGATCACCAGATTCAT+GGG 0.582622 8_1:+88485631 None:intergenic
TTGATGCATAAGGTGCAAGT+TGG 0.584006 8_1:-88487980 Msa1223870:CDS
ATCTGAAAGAGAAATAGAAG+AGG 0.585860 8_1:-88491276 Msa1223870:five_prime_UTR
TCAATTAACGGTGGTAGTGG+TGG 0.586127 8_1:-88490992 Msa1223870:five_prime_UTR
ACTGACGTTTATTAGAGAAG+TGG 0.586551 8_1:-88487810 Msa1223870:CDS
CATCGTTAAATATGCAAAGA+GGG 0.587269 8_1:-88489472 Msa1223870:CDS
TGATCAATTAACGGTGGTAG+TGG 0.587921 8_1:-88490995 Msa1223870:five_prime_UTR
GTGTGCTTTCCAATCTTCGA+CGG 0.588467 8_1:+88487532 None:intergenic
CAAAGGATTAGCAAGGGAAG+GGG 0.590290 8_1:+88489869 None:intergenic
CTTCATTCTTCATGGACCGG+TGG 0.590546 8_1:-88490743 Msa1223870:CDS
GCTCGATTCCAGTCCTCACA+GGG 0.595969 8_1:+88489811 None:intergenic
TCTTGTACTCAAGAATCCAC+TGG 0.597314 8_1:+88489439 None:intergenic
CAGGCATAGATGAATAAGCT+GGG 0.601849 8_1:+88485573 None:intergenic
CCAACTAGAGGACAACAGAT+GGG 0.604467 8_1:+88485397 None:intergenic
GAACAAACACTCGCGGAGTG+TGG 0.604696 8_1:-88490497 Msa1223870:CDS
GGATGAGAATCACAAAGGGT+TGG 0.611943 8_1:-88489970 Msa1223870:CDS
TCATCGTTAAATATGCAAAG+AGG 0.615436 8_1:-88489473 Msa1223870:CDS
GGACTTGTAAATGTGGAGAC+GGG 0.615613 8_1:+88485652 None:intergenic
GTTCAACAAAGGATTAGCAA+GGG 0.616019 8_1:+88489863 None:intergenic
AACATACAAGGTAACAAGAA+CGG 0.618396 8_1:+88490220 None:intergenic
GTGGTAGTGGTGGAAGTAGA+CGG 0.618424 8_1:-88490982 Msa1223870:five_prime_UTR
TTCTCAAAGTATCCAACTAG+AGG 0.620356 8_1:+88485385 None:intergenic
AAAAGGTTAGGGCTTTCGAT+CGG 0.620493 8_1:+88490896 None:intergenic
ATTCATGGGACTTGTAAATG+TGG 0.624672 8_1:+88485645 None:intergenic
ATGAAACGTCTTGGACAATG+AGG 0.626594 8_1:+88490130 None:intergenic
GCGATCCAGCTGTGTCCTGG+TGG 0.633678 8_1:-88487767 Msa1223870:CDS
GAAGTAGACGGCACCGACGA+CGG 0.634475 8_1:-88490970 Msa1223870:five_prime_UTR
AACTTGCTGATAGTTTGTTG+AGG 0.634625 8_1:-88489914 Msa1223870:CDS
GAAAGAGAAATAGAAGAGGA+CGG 0.636273 8_1:-88491272 Msa1223870:five_prime_UTR
AAGAATCCACTGGTGTTCGT+CGG 0.639588 8_1:+88489449 None:intergenic
AGAGGGCCGACGAACACCAG+TGG 0.642356 8_1:-88489455 Msa1223870:CDS
TCACCAATTTCGAAGCTAGG+AGG 0.648868 8_1:-88489413 Msa1223870:CDS
GGTGGTGTTGGTTCTAGCGG+CGG 0.650792 8_1:-88490716 Msa1223870:CDS
GGTAACAAGAACGGAAATGG+CGG 0.652521 8_1:+88490229 None:intergenic
TCTGAGGATGAGAATCACAA+AGG 0.662376 8_1:-88489975 Msa1223870:CDS
GGACAAGAGATTCACTGACA+AGG 0.665008 8_1:-88489646 Msa1223870:CDS
GATCTTGATTGGATGCTGCG+TGG 0.672731 8_1:-88487572 Msa1223870:CDS
TGTATGTTTCACCTTATACG+GGG 0.672887 8_1:-88490205 Msa1223870:CDS
GAAAGATAGAGAGAGCACGC+AGG 0.676105 8_1:+88489594 None:intergenic
TTATGATGATCAATTAACGG+TGG 0.683712 8_1:-88491001 Msa1223870:five_prime_UTR
GGTGGTAAGCAACACAACCA+CGG 0.692350 8_1:+88489775 None:intergenic
ACTGATTGTACAACAGACGA+AGG 0.701150 8_1:+88489703 None:intergenic
ACCACTCCCTCAGCACACCG+GGG 0.705242 8_1:+88489217 None:intergenic
TACTACGCATTCGACCAACA+AGG 0.708760 8_1:+88490450 None:intergenic
AGCCATGATGATATTCCCGG+AGG 0.709855 8_1:-88489385 Msa1223870:CDS
TGTAGTTAATAGTAAGAACA+GGG 0.714402 8_1:-88487735 Msa1223870:CDS
GAGCAGCAACAGGCTCTCCG+TGG 0.719942 8_1:-88489792 Msa1223870:CDS
TCAGTGGGAACAAACACTCG+CGG 0.732147 8_1:-88490504 Msa1223870:CDS
GGAGGTGAAAGAAGACTACG+AGG 0.770938 8_1:-88489367 Msa1223870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTACAATGATTTTTATT+AGG - chr8_1:88487486-88487505 Msa1223870:CDS 10.0%
!! TTATTATGATGATCAATTAA+CGG - chr8_1:88485460-88485479 Msa1223870:three_prime_UTR 15.0%
!! TTAATTTATTTGTAAGAAAG+GGG + chr8_1:88489336-88489355 None:intergenic 15.0%
!! GTTAATTTATTTGTAAGAAA+GGG + chr8_1:88489337-88489356 None:intergenic 15.0%
!! AACAGAGATAATAAAAAAAA+AGG + chr8_1:88489801-88489820 None:intergenic 15.0%
!! GGATAAAATATTAATAATAC+AGG - chr8_1:88491173-88491192 Msa1223870:five_prime_UTR 15.0%
!! GCTTACTACTTATATTAATT+TGG - chr8_1:88486143-88486162 Msa1223870:intron 20.0%
!!! TACTTATATTAATTTGGCTT+TGG - chr8_1:88486149-88486168 Msa1223870:intron 20.0%
!!! TGTATTAAGCATTTTTTGAA+TGG - chr8_1:88486303-88486322 Msa1223870:intron 20.0%
!!! ACGTAATGTGAATTTTAAAT+AGG + chr8_1:88488087-88488106 None:intergenic 20.0%
!!! TTTATGTCTTCTAAAGTAAT+AGG + chr8_1:88488553-88488572 None:intergenic 20.0%
!!! TATTACTTTAGAAGACATAA+AGG - chr8_1:88488552-88488571 Msa1223870:intron 20.0%
!!! TATTTTACCACAACTATATA+GGG - chr8_1:88489168-88489187 Msa1223870:CDS 20.0%
!! TAATTTATTTGTAAGAAAGG+GGG + chr8_1:88489335-88489354 None:intergenic 20.0%
!! GGTTAATTTATTTGTAAGAA+AGG + chr8_1:88489338-88489357 None:intergenic 20.0%
!! GATAATAAAAAAAAAGGAGT+GGG + chr8_1:88489795-88489814 None:intergenic 20.0%
!! AGATAATAAAAAAAAAGGAG+TGG + chr8_1:88489796-88489815 None:intergenic 20.0%
!! AATTATATTCAGTCATTGAA+GGG + chr8_1:88489838-88489857 None:intergenic 20.0%
!! TAATTATATTCAGTCATTGA+AGG + chr8_1:88489839-88489858 None:intergenic 20.0%
!! TCAATGACTGAATATAATTA+TGG - chr8_1:88489839-88489858 Msa1223870:CDS 20.0%
!!! AATTTCAGTCGATATTTTAT+GGG + chr8_1:88489975-88489994 None:intergenic 20.0%
!! GATAAATTAAATATAGCTTG+AGG + chr8_1:88490545-88490564 None:intergenic 20.0%
!!! AAGCTATATTTAATTTATCC+AGG - chr8_1:88490546-88490565 Msa1223870:CDS 20.0%
!! ATTAATAATACAGGATTTGA+AGG - chr8_1:88491182-88491201 Msa1223870:five_prime_UTR 20.0%
!! AAATGTGTTATGTATACATT+TGG - chr8_1:88491315-88491334 Msa1223870:five_prime_UTR 20.0%
! TTCTCATTTCGCAAAATTTA+GGG + chr8_1:88485169-88485188 None:intergenic 25.0%
! ATTCTCATTTCGCAAAATTT+AGG + chr8_1:88485170-88485189 None:intergenic 25.0%
! ATTCGAATGAAGAAATGAAT+AGG + chr8_1:88485808-88485827 None:intergenic 25.0%
! ATTGTTTATGATCTTTGTCA+TGG - chr8_1:88486081-88486100 Msa1223870:intron 25.0%
!! TCTCTATCTTTCAATTTTGA+AGG - chr8_1:88486881-88486900 Msa1223870:intron 25.0%
!! AAGATTTCTAAGCTTTATGA+TGG - chr8_1:88486912-88486931 Msa1223870:intron 25.0%
!! AATCTTTTGAATACATTGCA+CGG - chr8_1:88487162-88487181 Msa1223870:intron 25.0%
! ATATGTTGAACAAGTATTTG+AGG - chr8_1:88487517-88487536 Msa1223870:CDS 25.0%
! CTAAACATTTCTTTATGCAA+AGG + chr8_1:88487550-88487569 None:intergenic 25.0%
!!! AGTATAGAGGTTTTATATCA+TGG + chr8_1:88487860-88487879 None:intergenic 25.0%
! TGAATGTTGAGTAATAGATA+AGG + chr8_1:88488023-88488042 None:intergenic 25.0%
! TTATCACATGGAAATACAAT+AGG - chr8_1:88488052-88488071 Msa1223870:intron 25.0%
!!! AACTTTGAAATCATGTTTAG+TGG + chr8_1:88488137-88488156 None:intergenic 25.0%
!!! TTCAAAGTTGTTGTTTTTAG+TGG - chr8_1:88488148-88488167 Msa1223870:intron 25.0%
! AATCAAGAAAATTTCAACAC+AGG + chr8_1:88488197-88488216 None:intergenic 25.0%
! TTTCTTGATTTCTTCTACAT+TGG - chr8_1:88488207-88488226 Msa1223870:intron 25.0%
! TTGTAGTTAATAGTAAGAAC+AGG - chr8_1:88488728-88488747 Msa1223870:intron 25.0%
! TGTAGTTAATAGTAAGAACA+GGG - chr8_1:88488729-88488748 Msa1223870:intron 25.0%
! GTATGTTGATCTTCTTATAA+AGG - chr8_1:88488756-88488775 Msa1223870:intron 25.0%
!! ATATTCAGATATCTTGGTTT+TGG - chr8_1:88488983-88489002 Msa1223870:intron 25.0%
!!! TATTCAGATATCTTGGTTTT+GGG - chr8_1:88488984-88489003 Msa1223870:intron 25.0%
!! GTATTTTACCACAACTATAT+AGG - chr8_1:88489167-88489186 Msa1223870:CDS 25.0%
! AACAAGAGTTGTTAATAAGA+GGG + chr8_1:88489288-88489307 None:intergenic 25.0%
! TTTCAGTTGCAAGTAAAATT+GGG + chr8_1:88489526-88489545 None:intergenic 25.0%
! ATTATATTCAGTCATTGAAG+GGG + chr8_1:88489837-88489856 None:intergenic 25.0%
! ATGACTGAATATAATTATGG+TGG - chr8_1:88489842-88489861 Msa1223870:CDS 25.0%
! TGACTGAATATAATTATGGT+GGG - chr8_1:88489843-88489862 Msa1223870:CDS 25.0%
!! GAATTTCAGTCGATATTTTA+TGG + chr8_1:88489976-88489995 None:intergenic 25.0%
! GAAAAAAAGTAAGAAGAATG+AGG + chr8_1:88490144-88490163 None:intergenic 25.0%
!! GGATGTAATTTTATTGATCT+TGG - chr8_1:88491136-88491155 Msa1223870:five_prime_UTR 25.0%
! ATCTTGGTCAAATGTTTATA+TGG - chr8_1:88491152-88491171 Msa1223870:five_prime_UTR 25.0%
ATCTGAAAGAGAAATAGAAG+AGG - chr8_1:88485188-88485207 Msa1223870:three_prime_UTR 30.0%
!!! TTTTTGTTTGGGTTGGTTTT+TGG + chr8_1:88485221-88485240 None:intergenic 30.0%
TTATGATGATCAATTAACGG+TGG - chr8_1:88485463-88485482 Msa1223870:three_prime_UTR 30.0%
!!! ATCGGAGTCATTTTTTTAGA+CGG + chr8_1:88485553-88485572 None:intergenic 30.0%
! GTTGTTGTTGAAAAAGGTTA+GGG + chr8_1:88485582-88485601 None:intergenic 30.0%
! TGTTGTTGTTGAAAAAGGTT+AGG + chr8_1:88485583-88485602 None:intergenic 30.0%
! GTTGTTGTTGTTGTTGAAAA+AGG + chr8_1:88485588-88485607 None:intergenic 30.0%
!!! AGAATGAAGAGTTGTTTTTG+TGG + chr8_1:88485710-88485729 None:intergenic 30.0%
AAACAACTCTTCATTCTTCA+TGG - chr8_1:88485713-88485732 Msa1223870:CDS 30.0%
TTCATTCGAATGATGTCAAA+AGG - chr8_1:88485817-88485836 Msa1223870:intron 30.0%
! ATTGATTTCACTGTTTCTTC+TGG + chr8_1:88485868-88485887 None:intergenic 30.0%
GAACGAATTGAAGAAATGAA+AGG - chr8_1:88485892-88485911 Msa1223870:intron 30.0%
TTGGCAAGTTGTTAATGATA+TGG - chr8_1:88486053-88486072 Msa1223870:intron 30.0%
TTAATAGATTTAACAGCGTC+AGG + chr8_1:88486117-88486136 None:intergenic 30.0%
AACATACAAGGTAACAAGAA+CGG + chr8_1:88486247-88486266 None:intergenic 30.0%
CTTGTATGTTTCACCTTATA+CGG - chr8_1:88486257-88486276 Msa1223870:intron 30.0%
TTGTATGTTTCACCTTATAC+GGG - chr8_1:88486258-88486277 Msa1223870:intron 30.0%
TGTAAATTGCTTAGTAGAGT+TGG - chr8_1:88486387-88486406 Msa1223870:intron 30.0%
GTAAATTGCTTAGTAGAGTT+GGG - chr8_1:88486388-88486407 Msa1223870:intron 30.0%
GTACGACAAAAAAGATACAA+AGG + chr8_1:88486423-88486442 None:intergenic 30.0%
!!! TCTTTTTTGTCGTACTAGTT+TGG - chr8_1:88486428-88486447 Msa1223870:intron 30.0%
!!! CTTTTTTGTCGTACTAGTTT+GGG - chr8_1:88486429-88486448 Msa1223870:intron 30.0%
!!! TTTTTTGTCGTACTAGTTTG+GGG - chr8_1:88486430-88486449 Msa1223870:intron 30.0%
!!! TACTAGTTTGGGGTTTTTTT+TGG - chr8_1:88486440-88486459 Msa1223870:intron 30.0%
!! TGATAGTTTGTTGAGGAATT+TGG - chr8_1:88486557-88486576 Msa1223870:intron 30.0%
! TTGAAGGCAAGTATCAATTT+TGG + chr8_1:88486793-88486812 None:intergenic 30.0%
TGATACTTGCCTTCAAAAAA+TGG - chr8_1:88486797-88486816 Msa1223870:intron 30.0%
!!! ATCTCTTGTCCATTTTTTGA+AGG + chr8_1:88486809-88486828 None:intergenic 30.0%
TCATCGTTAAATATGCAAAG+AGG - chr8_1:88486991-88487010 Msa1223870:intron 30.0%
CATCGTTAAATATGCAAAGA+GGG - chr8_1:88486992-88487011 Msa1223870:intron 30.0%
! ATCTTTTGAATACATTGCAC+GGG - chr8_1:88487163-88487182 Msa1223870:intron 30.0%
! GAAATCTTGTTCGATCTTTT+GGG + chr8_1:88487328-88487347 None:intergenic 30.0%
! AGAAATCTTGTTCGATCTTT+TGG + chr8_1:88487329-88487348 None:intergenic 30.0%
TGGATAAACATACCAGAATT+GGG + chr8_1:88487353-88487372 None:intergenic 30.0%
TTGGATAAACATACCAGAAT+TGG + chr8_1:88487354-88487373 None:intergenic 30.0%
! GAGAAGTAAGTTCAGAATTT+TGG + chr8_1:88487373-88487392 None:intergenic 30.0%
TTGAAAATACTCCTAACACA+TGG + chr8_1:88487412-88487431 None:intergenic 30.0%
!! TAGCTTGCATTTTTCTGATT+TGG - chr8_1:88487459-88487478 Msa1223870:intron 30.0%
! TCTCTCACTATTGTTTCTTA+GGG + chr8_1:88487583-88487602 None:intergenic 30.0%
! TTCTCTCACTATTGTTTCTT+AGG + chr8_1:88487584-88487603 None:intergenic 30.0%
TTTGTAAGGTTAATGAAGTG+AGG + chr8_1:88487638-88487657 None:intergenic 30.0%
TGCAATAGTTTAGTGAAAAC+CGG - chr8_1:88487697-88487716 Msa1223870:CDS 30.0%
AAACTTTCGTACAAGTATAG+AGG + chr8_1:88487873-88487892 None:intergenic 30.0%
!! ATCTGATTCAACCATTTTTG+AGG - chr8_1:88487930-88487949 Msa1223870:CDS 30.0%
GGAAATGTGGAAAGAAATAT+TGG + chr8_1:88487967-88487986 None:intergenic 30.0%
!!! AGTTGTTGTTTTTAGTGGAT+AGG - chr8_1:88488153-88488172 Msa1223870:intron 30.0%
TTAACAATTACGACTGAAAC+AGG + chr8_1:88488240-88488259 None:intergenic 30.0%
GAAAAAAGACAAGTTACACT+GGG + chr8_1:88488278-88488297 None:intergenic 30.0%
AGAAAAAAGACAAGTTACAC+TGG + chr8_1:88488279-88488298 None:intergenic 30.0%
GACAAAGGATAAGTTAAACT+GGG + chr8_1:88488383-88488402 None:intergenic 30.0%
AGACAAAGGATAAGTTAAAC+TGG + chr8_1:88488384-88488403 None:intergenic 30.0%
!! AGCTTTAAACAAGTAGACAA+AGG + chr8_1:88488398-88488417 None:intergenic 30.0%
!! TTCATTGATTCAGATGCATT+AGG - chr8_1:88488631-88488650 Msa1223870:intron 30.0%
ACACAGATATTCAGATATCT+TGG - chr8_1:88488977-88488996 Msa1223870:intron 30.0%
TGACTAGTGACAAGTATATA+GGG - chr8_1:88489090-88489109 Msa1223870:intron 30.0%
! AGATTTTCCCTATATAGTTG+TGG + chr8_1:88489178-88489197 None:intergenic 30.0%
GAACAAGAGTTGTTAATAAG+AGG + chr8_1:88489289-88489308 None:intergenic 30.0%
TATTAACAACTCTTGTTCAC+AGG - chr8_1:88489291-88489310 Msa1223870:CDS 30.0%
TGAAGGGATTTAACAAATCA+GGG - chr8_1:88489452-88489471 Msa1223870:CDS 30.0%
TAAACAAATGCCAAGTCATT+TGG + chr8_1:88489494-88489513 None:intergenic 30.0%
CTTTCAGTTGCAAGTAAAAT+TGG + chr8_1:88489527-88489546 None:intergenic 30.0%
!!! CTCCAAGAATCATTTTTTCT+GGG - chr8_1:88489553-88489572 Msa1223870:CDS 30.0%
AACCCAGAAAAAATGATTCT+TGG + chr8_1:88489558-88489577 None:intergenic 30.0%
TTCTTCTCTAATCTATGGTT+GGG + chr8_1:88489654-88489673 None:intergenic 30.0%
TTTCTTCTCTAATCTATGGT+TGG + chr8_1:88489655-88489674 None:intergenic 30.0%
! TTTTCATTGGACAATGTGTA+AGG + chr8_1:88489689-88489708 None:intergenic 30.0%
! TGGTGATACATCATTTTCAT+TGG + chr8_1:88489702-88489721 None:intergenic 30.0%
!! ATATACACCACTTTTCACTA+CGG - chr8_1:88489769-88489788 Msa1223870:CDS 30.0%
TGGTCATTGGAAGAAAAAAA+CGG + chr8_1:88490013-88490032 None:intergenic 30.0%
!!! ACAATGGTTTTTGCCATTTT+TGG - chr8_1:88490040-88490059 Msa1223870:CDS 30.0%
AATCAACACCAAACCAAAAA+TGG + chr8_1:88490056-88490075 None:intergenic 30.0%
! TTTAGAAGGAAGTACACAAA+TGG + chr8_1:88490250-88490269 None:intergenic 30.0%
ATTTGTGTACTTCCTTCTAA+AGG - chr8_1:88490249-88490268 Msa1223870:CDS 30.0%
!! TCAATATCTTAGTCTTGTAG+AGG + chr8_1:88490320-88490339 None:intergenic 30.0%
ATGGTATCAGAAATGAAGAA+GGG + chr8_1:88490379-88490398 None:intergenic 30.0%
CTTTCAGTTTAAACACATGA+TGG + chr8_1:88490398-88490417 None:intergenic 30.0%
ATTGCAGAACAAAATATCTG+AGG + chr8_1:88490599-88490618 None:intergenic 30.0%
ACAGTCTGTTTGAAAAAACT+TGG - chr8_1:88490689-88490708 Msa1223870:CDS 30.0%
! AGAAGGTTCTTCTTTTCTTT+TGG - chr8_1:88490743-88490762 Msa1223870:CDS 30.0%
GTGAAATATTTACCAGTTGA+AGG - chr8_1:88490772-88490791 Msa1223870:CDS 30.0%
! TAAAAGCATGTATGAGATGA+AGG + chr8_1:88490859-88490878 None:intergenic 30.0%
! CATCTCATACATGCTTTTAT+CGG - chr8_1:88490860-88490879 Msa1223870:CDS 30.0%
! AAGTTGTCAAAGTTCTGTTT+TGG - chr8_1:88491101-88491120 Msa1223870:five_prime_UTR 30.0%
GAAAGAGAAATAGAAGAGGA+CGG - chr8_1:88485192-88485211 Msa1223870:three_prime_UTR 35.0%
! TTTTTGTGTGTGCTTTGTGA+TGG + chr8_1:88485273-88485292 None:intergenic 35.0%
! GTCTTCGTCTAATTTTCGTT+TGG + chr8_1:88485629-88485648 None:intergenic 35.0%
! GAATTCCTCTTTTTGAACAG+AGG - chr8_1:88485914-88485933 Msa1223870:intron 35.0%
ATCAACCTCTGTTCAAAAAG+AGG + chr8_1:88485922-88485941 None:intergenic 35.0%
!! GAACAGAGGTTGATTTTCAA+TGG - chr8_1:88485928-88485947 Msa1223870:intron 35.0%
! TCAGCATCAAGTTTAGGTTT+AGG + chr8_1:88486177-88486196 None:intergenic 35.0%
CGTATAAGGTGAAACATACA+AGG + chr8_1:88486259-88486278 None:intergenic 35.0%
TGTATGTTTCACCTTATACG+GGG - chr8_1:88486259-88486278 Msa1223870:intron 35.0%
!! AACTTGCTGATAGTTTGTTG+AGG - chr8_1:88486550-88486569 Msa1223870:intron 35.0%
! GTTCAACAAAGGATTAGCAA+GGG + chr8_1:88486604-88486623 None:intergenic 35.0%
! TGTTCAACAAAGGATTAGCA+AGG + chr8_1:88486605-88486624 None:intergenic 35.0%
TCCTTTGTTGAACAATGTTG+AGG - chr8_1:88486611-88486630 Msa1223870:intron 35.0%
TCCTCAACATTGTTCAACAA+AGG + chr8_1:88486615-88486634 None:intergenic 35.0%
TTTAGCCATGATGATATTCC+CGG - chr8_1:88487076-88487095 Msa1223870:intron 35.0%
TTCAAAAATGAAGAAGCCAC+TGG - chr8_1:88487224-88487243 Msa1223870:intron 35.0%
GGATAAACATACCAGAATTG+GGG + chr8_1:88487352-88487371 None:intergenic 35.0%
! CTCTCACTATTGTTTCTTAG+GGG + chr8_1:88487582-88487601 None:intergenic 35.0%
GCAATAGTTTAGTGAAAACC+GGG - chr8_1:88487698-88487717 Msa1223870:CDS 35.0%
TGATAGACAAACAAACAACC+CGG + chr8_1:88487719-88487738 None:intergenic 35.0%
CTCCAATTTGATGAAATCCT+TGG - chr8_1:88487771-88487790 Msa1223870:CDS 35.0%
CTCCAAGGATTTCATCAAAT+TGG + chr8_1:88487776-88487795 None:intergenic 35.0%
CAATTTGATGAAATCCTTGG+AGG - chr8_1:88487774-88487793 Msa1223870:CDS 35.0%
TTCATTGATATAGTCCTCCA+AGG + chr8_1:88487791-88487810 None:intergenic 35.0%
TGGAGGACTATATCAATGAA+AGG - chr8_1:88487791-88487810 Msa1223870:CDS 35.0%
TGAAAGGCAAACATCTCATA+TGG - chr8_1:88487807-88487826 Msa1223870:CDS 35.0%
!! TATCATGGAAGCATTTGTGA+TGG + chr8_1:88487845-88487864 None:intergenic 35.0%
!!! ACCATTTTTGAGGCTGTTTT+AGG - chr8_1:88487940-88487959 Msa1223870:CDS 35.0%
!!! CCATTTTTGAGGCTGTTTTA+GGG - chr8_1:88487941-88487960 Msa1223870:CDS 35.0%
ATTCTTCAAGAAGCAACAGA+AGG + chr8_1:88487988-88488007 None:intergenic 35.0%
CTTCTTGAAGAATGATGCAT+TGG - chr8_1:88487995-88488014 Msa1223870:CDS 35.0%
TCACGTAGTCATTTATCACA+TGG - chr8_1:88488040-88488059 Msa1223870:CDS 35.0%
! CTACTTGTTTAAAGCTTCCA+AGG - chr8_1:88488297-88488316 Msa1223870:intron 35.0%
! CTACTTGTTTAAAGCTTCCA+AGG - chr8_1:88488297-88488316 Msa1223870:intron 35.0%
ATGCAGATTATGTTGTACCT+TGG + chr8_1:88488422-88488441 None:intergenic 35.0%
!! TGCATTAGCTTTGATGCATA+AGG - chr8_1:88488474-88488493 Msa1223870:intron 35.0%
TTTGCTTGCAGCTTCTATAT+AGG + chr8_1:88488591-88488610 None:intergenic 35.0%
TAGAAGCTGCAAGCAAATAT+TGG - chr8_1:88488594-88488613 Msa1223870:intron 35.0%
ACTGACGTTTATTAGAGAAG+TGG - chr8_1:88488654-88488673 Msa1223870:intron 35.0%
ATTAGAGAAGTGGAGGAATT+AGG - chr8_1:88488664-88488683 Msa1223870:intron 35.0%
!!! ACTACAATGTTTTTTCCACC+AGG + chr8_1:88488715-88488734 None:intergenic 35.0%
AAGAATCTCAGCAAAACCTT+TGG + chr8_1:88488824-88488843 None:intergenic 35.0%
! AACTTTGAAAGAAGAACTGC+TGG + chr8_1:88488861-88488880 None:intergenic 35.0%
TAGAGTCTGAAGATCTTGAT+TGG - chr8_1:88488881-88488900 Msa1223870:intron 35.0%
AAAGCACACACTGAGTATAA+TGG - chr8_1:88488946-88488965 Msa1223870:intron 35.0%
GTGACTAGTGACAAGTATAT+AGG - chr8_1:88489089-88489108 Msa1223870:intron 35.0%
ATGAGTGAATTGAGACCTAA+GGG + chr8_1:88489247-88489266 None:intergenic 35.0%
TATGAGTGAATTGAGACCTA+AGG + chr8_1:88489248-88489267 None:intergenic 35.0%
AGAGTTGTTAATAAGAGGGA+GGG + chr8_1:88489284-88489303 None:intergenic 35.0%
AAGAGTTGTTAATAAGAGGG+AGG + chr8_1:88489285-88489304 None:intergenic 35.0%
TTATTTGTAAGAAAGGGGGA+CGG + chr8_1:88489331-88489350 None:intergenic 35.0%
!!! GTTAGAGTCGGTTAGTTTTT+AGG + chr8_1:88489365-88489384 None:intergenic 35.0%
TTAGCAGAAAGAGTTAGAGT+CGG + chr8_1:88489377-88489396 None:intergenic 35.0%
AAGACAAGGTGAAACTTTAG+AGG + chr8_1:88489427-88489446 None:intergenic 35.0%
TCACCTTGTCTTTAATGTGA+AGG - chr8_1:88489435-88489454 Msa1223870:CDS 35.0%
CACCTTGTCTTTAATGTGAA+GGG - chr8_1:88489436-88489455 Msa1223870:CDS 35.0%
ATCCCTTCACATTAAAGACA+AGG + chr8_1:88489441-88489460 None:intergenic 35.0%
GTGAAGGGATTTAACAAATC+AGG - chr8_1:88489451-88489470 Msa1223870:CDS 35.0%
GATTTAACAAATCAGGGACA+GGG - chr8_1:88489458-88489477 Msa1223870:CDS 35.0%
AAAAAATGATTCTTGGAGGC+AGG + chr8_1:88489551-88489570 None:intergenic 35.0%
CCAGAAAAAATGATTCTTGG+AGG + chr8_1:88489555-88489574 None:intergenic 35.0%
!!! CCTCCAAGAATCATTTTTTC+TGG - chr8_1:88489552-88489571 Msa1223870:CDS 35.0%
TCTTCTCTAATCTATGGTTG+GGG + chr8_1:88489653-88489672 None:intergenic 35.0%
GGGATTTCTTCTCTAATCTA+TGG + chr8_1:88489659-88489678 None:intergenic 35.0%
TAGATTAGAGAAGAAATCCC+TGG - chr8_1:88489659-88489678 Msa1223870:CDS 35.0%
GGTCATTGGAAGAAAAAAAC+GGG + chr8_1:88490012-88490031 None:intergenic 35.0%
!!! GGTTTTTGCCATTTTTGGTT+TGG - chr8_1:88490045-88490064 Msa1223870:CDS 35.0%
CTTTGTCTCATCCTAAACTT+TGG - chr8_1:88490087-88490106 Msa1223870:CDS 35.0%
TTCTGTGTACATTTCTGTCT+TGG - chr8_1:88490161-88490180 Msa1223870:CDS 35.0%
GGAATATCTGGATCAAATCA+TGG - chr8_1:88490218-88490237 Msa1223870:CDS 35.0%
TTTGGTGAAACCACTATTTG+AGG - chr8_1:88490288-88490307 Msa1223870:CDS 35.0%
TTGGTGAAACCACTATTTGA+GGG - chr8_1:88490289-88490308 Msa1223870:CDS 35.0%
!! ATATCTTAGTCTTGTAGAGG+AGG + chr8_1:88490317-88490336 None:intergenic 35.0%
AGCGATATAAGGTCATTTGA+AGG + chr8_1:88490347-88490366 None:intergenic 35.0%
GATGGTATCAGAAATGAAGA+AGG + chr8_1:88490380-88490399 None:intergenic 35.0%
TATCCAGGATCTCTTAATCT+AGG - chr8_1:88490561-88490580 Msa1223870:CDS 35.0%
TGAAAAAACTTGGCAGATAG+TGG - chr8_1:88490699-88490718 Msa1223870:CDS 35.0%
GAAAAAACTTGGCAGATAGT+GGG - chr8_1:88490700-88490719 Msa1223870:CDS 35.0%
AAAAAACTTGGCAGATAGTG+GGG - chr8_1:88490701-88490720 Msa1223870:CDS 35.0%
AATGACAGCTGAAGAAAAGA+AGG - chr8_1:88490726-88490745 Msa1223870:CDS 35.0%
ATTCATGGGACTTGTAAATG+TGG + chr8_1:88490822-88490841 None:intergenic 35.0%
ATTTACAAGTCCCATGAATC+TGG - chr8_1:88490823-88490842 Msa1223870:CDS 35.0%
GTCATTACCCAAGAACATAT+TGG - chr8_1:88490934-88490953 Msa1223870:five_prime_UTR 35.0%
ACTAGAGCCAATATGTTCTT+GGG + chr8_1:88490944-88490963 None:intergenic 35.0%
AACTAGAGCCAATATGTTCT+TGG + chr8_1:88490945-88490964 None:intergenic 35.0%
!!! GAACATATTGGCTCTAGTTT+TGG - chr8_1:88490946-88490965 Msa1223870:five_prime_UTR 35.0%
! TTCTCAAAGTATCCAACTAG+AGG + chr8_1:88491082-88491101 None:intergenic 35.0%
!!! TCTGTTTTGGAAAGTAGTCA+AGG - chr8_1:88491114-88491133 Msa1223870:five_prime_UTR 35.0%
!!! CTGTTTTGGAAAGTAGTCAA+GGG - chr8_1:88491115-88491134 Msa1223870:five_prime_UTR 35.0%
! ACATTCTAGTTAATAGCTGC+TGG - chr8_1:88491221-88491240 Msa1223870:five_prime_UTR 35.0%
!! GTGTCTGTGGGTTTTTGTTT+GGG + chr8_1:88485232-88485251 None:intergenic 40.0%
! TGTGTCTGTGGGTTTTTGTT+TGG + chr8_1:88485233-88485252 None:intergenic 40.0%
!!! TGATGGAACTGAGCGTTTTT+TGG + chr8_1:88485256-88485275 None:intergenic 40.0%
TGATCAATTAACGGTGGTAG+TGG - chr8_1:88485469-88485488 Msa1223870:three_prime_UTR 40.0%
AAAAGGTTAGGGCTTTCGAT+CGG + chr8_1:88485571-88485590 None:intergenic 40.0%
ACTCTTCATTCTTCATGGAC+CGG - chr8_1:88485718-88485737 Msa1223870:CDS 40.0%
TCAATGGTAAACAGCTTCAG+TGG - chr8_1:88485944-88485963 Msa1223870:intron 40.0%
CAATGGTAAACAGCTTCAGT+GGG - chr8_1:88485945-88485964 Msa1223870:intron 40.0%
TTAACAACTTGCCAAGCTTG+AGG + chr8_1:88486048-88486067 None:intergenic 40.0%
GCAGAATCAGCATCAAGTTT+AGG + chr8_1:88486183-88486202 None:intergenic 40.0%
CAAGGTAACAAGAACGGAAA+TGG + chr8_1:88486241-88486260 None:intergenic 40.0%
TTCACCTTATACGGGGAATA+AGG - chr8_1:88486266-88486285 Msa1223870:intron 40.0%
ATGAAACGTCTTGGACAATG+AGG + chr8_1:88486337-88486356 None:intergenic 40.0%
AGCTGCTGAAATTTCACTTG+CGG - chr8_1:88486464-88486483 Msa1223870:intron 40.0%
TCTGAGGATGAGAATCACAA+AGG - chr8_1:88486489-88486508 Msa1223870:intron 40.0%
CTGAGGATGAGAATCACAAA+GGG - chr8_1:88486490-88486509 Msa1223870:intron 40.0%
TCAGCAAGTTCACGAACAAA+CGG + chr8_1:88486540-88486559 None:intergenic 40.0%
GAGGAATTTGGATTTGAGCT+TGG - chr8_1:88486569-88486588 Msa1223870:intron 40.0%
! ACAAAGGATTAGCAAGGGAA+GGG + chr8_1:88486599-88486618 None:intergenic 40.0%
! AACAAAGGATTAGCAAGGGA+AGG + chr8_1:88486600-88486619 None:intergenic 40.0%
ACTGATTGTACAACAGACGA+AGG + chr8_1:88486764-88486783 None:intergenic 40.0%
GAGATTCACTGACAAGGAAA+TGG - chr8_1:88486824-88486843 Msa1223870:intron 40.0%
TGACAAGGAAATGGTGTTTG+AGG - chr8_1:88486833-88486852 Msa1223870:intron 40.0%
TCTTGTACTCAAGAATCCAC+TGG + chr8_1:88487028-88487047 None:intergenic 40.0%
ATGTCACCAATTTCGAAGCT+AGG - chr8_1:88487048-88487067 Msa1223870:intron 40.0%
!!! GTGGTTTCTTTTGGTTTGTC+AGG - chr8_1:88487265-88487284 Msa1223870:intron 40.0%
! TTGTCAGGCACTTTTCAATC+AGG - chr8_1:88487280-88487299 Msa1223870:intron 40.0%
ACAAGATTTCTCCCCAATTC+TGG - chr8_1:88487338-88487357 Msa1223870:intron 40.0%
TAACACATGGCAAACAGCAA+AGG + chr8_1:88487399-88487418 None:intergenic 40.0%
!! TTTGCTGTTTGCCATGTGTT+AGG - chr8_1:88487398-88487417 Msa1223870:intron 40.0%
CTCTTCAGCTGCAATTTGTA+AGG + chr8_1:88487652-88487671 None:intergenic 40.0%
AACATCTCATATGGCAAAGC+AGG - chr8_1:88487816-88487835 Msa1223870:CDS 40.0%
CCCTAAAACAGCCTCAAAAA+TGG + chr8_1:88487944-88487963 None:intergenic 40.0%
AGAAGCAACAGAAGGAAATG+TGG + chr8_1:88487980-88487999 None:intergenic 40.0%
! ATAGGATTGCTTGTTGCTTG+AGG - chr8_1:88488171-88488190 Msa1223870:intron 40.0%
CCACAATGTATGATGTACCT+TGG + chr8_1:88488317-88488336 None:intergenic 40.0%
CCAAGGTACATCATACATTG+TGG - chr8_1:88488314-88488333 Msa1223870:intron 40.0%
TTGATGCATAAGGTGCAAGT+TGG - chr8_1:88488484-88488503 Msa1223870:intron 40.0%
! TCGCGTGTTTTTCTTGCAAT+TGG - chr8_1:88488519-88488538 Msa1223870:intron 40.0%
! GTGTTTTTCTTGCAATTGGC+TGG - chr8_1:88488523-88488542 Msa1223870:intron 40.0%
TTGCAGCTTCTATATAGGTC+AGG + chr8_1:88488586-88488605 None:intergenic 40.0%
CTGCAAGCAAATATTGGAGA+TGG - chr8_1:88488600-88488619 Msa1223870:intron 40.0%
GACGTTTATTAGAGAAGTGG+AGG - chr8_1:88488657-88488676 Msa1223870:intron 40.0%
TTTCCAATCTTCGACGGAAA+TGG + chr8_1:88488929-88488948 None:intergenic 40.0%
!!! TCAGATATCTTGGTTTTGGG+AGG - chr8_1:88488987-88489006 Msa1223870:intron 40.0%
!!! GTCGGTTAGTTTTTAGGAGT+TGG + chr8_1:88489359-88489378 None:intergenic 40.0%
!! CTTTAGAGGCGAGTATTGAT+AGG + chr8_1:88489413-88489432 None:intergenic 40.0%
GGATTTAACAAATCAGGGAC+AGG - chr8_1:88489457-88489476 Msa1223870:CDS 40.0%
AACAACACTACAGGAACTTC+TGG + chr8_1:88489586-88489605 None:intergenic 40.0%
AGAAGTTCCTGTAGTGTTGT+TGG - chr8_1:88489585-88489604 Msa1223870:CDS 40.0%
! TTCCTGTAGTGTTGTTGGTT+TGG - chr8_1:88489590-88489609 Msa1223870:CDS 40.0%
ACAATGTGTAAGGTCATCCA+GGG + chr8_1:88489679-88489698 None:intergenic 40.0%
AATATTAAGCATCACCCAGC+AGG + chr8_1:88489737-88489756 None:intergenic 40.0%
TTTCTTCCAATGACCAACAC+AGG - chr8_1:88490017-88490036 Msa1223870:CDS 40.0%
CAAAAACCATTGTCCTGTGT+TGG + chr8_1:88490033-88490052 None:intergenic 40.0%
AAGAAGAATGAGGAGAGCTA+GGG + chr8_1:88490134-88490153 None:intergenic 40.0%
TAAGAAGAATGAGGAGAGCT+AGG + chr8_1:88490135-88490154 None:intergenic 40.0%
ATATTCCTGTCAAGAAGCCA+AGG + chr8_1:88490205-88490224 None:intergenic 40.0%
TCACCAAAAAGACGTCATGA+AGG + chr8_1:88490276-88490295 None:intergenic 40.0%
GAAATGAAGAAGGGTTGAGT+GGG + chr8_1:88490370-88490389 None:intergenic 40.0%
AGAAATGAAGAAGGGTTGAG+TGG + chr8_1:88490371-88490390 None:intergenic 40.0%
CAACCTAGATTAAGAGATCC+TGG + chr8_1:88490567-88490586 None:intergenic 40.0%
AAGACGATCACCAGATTCAT+GGG + chr8_1:88490836-88490855 None:intergenic 40.0%
CAGGCATAGATGAATAAGCT+GGG + chr8_1:88490894-88490913 None:intergenic 40.0%
ACAGGCATAGATGAATAAGC+TGG + chr8_1:88490895-88490914 None:intergenic 40.0%
!!! TTGGCTCTAGTTTTGGTACT+TGG - chr8_1:88490953-88490972 Msa1223870:five_prime_UTR 40.0%
! TGCAGCTTTGTACAGACTAT+AGG - chr8_1:88491039-88491058 Msa1223870:five_prime_UTR 40.0%
!! CTGTGGGTTTTTGTTTGGGT+TGG + chr8_1:88485228-88485247 None:intergenic 45.0%
!!! GCGTTTTTTGGTGTGTCTGT+GGG + chr8_1:88485244-88485263 None:intergenic 45.0%
!!! AGCGTTTTTTGGTGTGTCTG+TGG + chr8_1:88485245-88485264 None:intergenic 45.0%
!! TCAATTAACGGTGGTAGTGG+TGG - chr8_1:88485472-88485491 Msa1223870:three_prime_UTR 45.0%
GACGCTAATCTTCACCTTGT+TGG - chr8_1:88486000-88486019 Msa1223870:intron 45.0%
TACTACGCATTCGACCAACA+AGG + chr8_1:88486017-88486036 None:intergenic 45.0%
GTACAGAACATCCTCAAGCT+TGG - chr8_1:88486034-88486053 Msa1223870:intron 45.0%
GGTAACAAGAACGGAAATGG+CGG + chr8_1:88486238-88486257 None:intergenic 45.0%
!! CAAGCCTTATTCCCCGTATA+AGG + chr8_1:88486273-88486292 None:intergenic 45.0%
AATTTCACTTGCGGCATCTG+AGG - chr8_1:88486473-88486492 Msa1223870:intron 45.0%
GGATGAGAATCACAAAGGGT+TGG - chr8_1:88486494-88486513 Msa1223870:intron 45.0%
!! GAATCACAAAGGGTTGGTGT+TGG - chr8_1:88486500-88486519 Msa1223870:intron 45.0%
! CAAAGGATTAGCAAGGGAAG+GGG + chr8_1:88486598-88486617 None:intergenic 45.0%
!! AAGCCTTTTTAGTCCCTGTG+AGG - chr8_1:88486640-88486659 Msa1223870:intron 45.0%
AGTCCTCACAGGGACTAAAA+AGG + chr8_1:88486646-88486665 None:intergenic 45.0%
!! TTTTTAGTCCCTGTGAGGAC+TGG - chr8_1:88486645-88486664 Msa1223870:intron 45.0%
CAGCAGGACAAGAACAAGAA+TGG - chr8_1:88486714-88486733 Msa1223870:intron 45.0%
GGACAAGAGATTCACTGACA+AGG - chr8_1:88486818-88486837 Msa1223870:intron 45.0%
AAGAATCCACTGGTGTTCGT+CGG + chr8_1:88487018-88487037 None:intergenic 45.0%
TCACCAATTTCGAAGCTAGG+AGG - chr8_1:88487051-88487070 Msa1223870:intron 45.0%
ATGCCTCCTAGCTTCGAAAT+TGG + chr8_1:88487057-88487076 None:intergenic 45.0%
TCGTAGTCTTCTTTCACCTC+CGG + chr8_1:88487098-88487117 None:intergenic 45.0%
TGCATGAGATGCTCATTGAC+AGG - chr8_1:88487123-88487142 Msa1223870:intron 45.0%
! TCTTGTTCGATCTTTTGGGC+AGG + chr8_1:88487324-88487343 None:intergenic 45.0%
CAAATTGCAGCTGAAGAGTG+AGG - chr8_1:88487654-88487673 Msa1223870:CDS 45.0%
GCTGAAGAGTGAGGATTTAG+TGG - chr8_1:88487663-88487682 Msa1223870:CDS 45.0%
! TTAGTGGCAAAAAGCGCATG+TGG + chr8_1:88488121-88488140 None:intergenic 45.0%
CTTGAGTACTTCAGCTTCTG+TGG - chr8_1:88488442-88488461 Msa1223870:intron 45.0%
AAGTGGAGGAATTAGGACAG+AGG - chr8_1:88488671-88488690 Msa1223870:intron 45.0%
TGTAACATCCATAGCTGAGC+AGG - chr8_1:88488786-88488805 Msa1223870:intron 45.0%
CAGGTTTCACACTTTGCCAA+AGG - chr8_1:88488805-88488824 Msa1223870:intron 45.0%
ATCTTGATTGGATGCTGCGT+GGG - chr8_1:88488893-88488912 Msa1223870:intron 45.0%
! ATGCCATTTCCGTCGAAGAT+TGG - chr8_1:88488923-88488942 Msa1223870:intron 45.0%
GTGTGCTTTCCAATCTTCGA+CGG + chr8_1:88488935-88488954 None:intergenic 45.0%
CTTAGAGACTCTGATGCAGT+GGG + chr8_1:88489126-88489145 None:intergenic 45.0%
TCTTAGAGACTCTGATGCAG+TGG + chr8_1:88489127-88489146 None:intergenic 45.0%
TGAATTGAGACCTAAGGGCA+AGG + chr8_1:88489242-88489261 None:intergenic 45.0%
AGAAAGGGGGACGGAATAAT+TGG + chr8_1:88489322-88489341 None:intergenic 45.0%
!! GGCGAGTATTGATAGGTGAT+CGG + chr8_1:88489406-88489425 None:intergenic 45.0%
TAACAAATCAGGGACAGGGA+CGG - chr8_1:88489462-88489481 Msa1223870:CDS 45.0%
!! TGTAGTGTTGTTGGTTTGGC+CGG - chr8_1:88489594-88489613 Msa1223870:CDS 45.0%
GACAATGTGTAAGGTCATCC+AGG + chr8_1:88489680-88489699 None:intergenic 45.0%
AAATGCACGAGCAACATCCA+TGG + chr8_1:88489915-88489934 None:intergenic 45.0%
! TATGGGTTGCATTGCACTGA+GGG + chr8_1:88489958-88489977 None:intergenic 45.0%
! TTATGGGTTGCATTGCACTG+AGG + chr8_1:88489959-88489978 None:intergenic 45.0%
! CATTGTCCTGTGTTGGTCAT+TGG + chr8_1:88490026-88490045 None:intergenic 45.0%
CAATGACCAACACAGGACAA+TGG - chr8_1:88490024-88490043 Msa1223870:CDS 45.0%
TGGACGGAGAACCAAAGTTT+AGG + chr8_1:88490101-88490120 None:intergenic 45.0%
! TCTCATCTTGAGTACTGCCT+TGG - chr8_1:88490185-88490204 Msa1223870:CDS 45.0%
GGCTTCTTGACAGGAATATC+TGG - chr8_1:88490206-88490225 Msa1223870:CDS 45.0%
CGTCATGAAGGACCTTTAGA+AGG + chr8_1:88490264-88490283 None:intergenic 45.0%
! GGTCCTTCATGACGTCTTTT+TGG - chr8_1:88490270-88490289 Msa1223870:CDS 45.0%
TTACCAGTTGAAGGCTTTCG+TGG - chr8_1:88490781-88490800 Msa1223870:CDS 45.0%
AAACCACGAAAGCCTTCAAC+TGG + chr8_1:88490787-88490806 None:intergenic 45.0%
AGTTGAAGGCTTTCGTGGTT+TGG - chr8_1:88490786-88490805 Msa1223870:CDS 45.0%
GTTGAAGGCTTTCGTGGTTT+GGG - chr8_1:88490787-88490806 Msa1223870:CDS 45.0%
GGACTTGTAAATGTGGAGAC+GGG + chr8_1:88490815-88490834 None:intergenic 45.0%
GGGACTTGTAAATGTGGAGA+CGG + chr8_1:88490816-88490835 None:intergenic 45.0%
GAAGACGATCACCAGATTCA+TGG + chr8_1:88490837-88490856 None:intergenic 45.0%
TTAAGACGAGCTTGCATGAC+AGG + chr8_1:88490913-88490932 None:intergenic 45.0%
TGGTGAACATACCTGCAATC+TGG - chr8_1:88490973-88490992 Msa1223870:five_prime_UTR 45.0%
CCAGTTTCTTTCCAGATTGC+AGG + chr8_1:88490987-88491006 None:intergenic 45.0%
CCTGCAATCTGGAAAGAAAC+TGG - chr8_1:88490984-88491003 Msa1223870:five_prime_UTR 45.0%
CCAACTAGAGGACAACAGAT+GGG + chr8_1:88491070-88491089 None:intergenic 45.0%
TCCAACTAGAGGACAACAGA+TGG + chr8_1:88491071-88491090 None:intergenic 45.0%
!! AATAGCTGCTGGTTCGTCAT+CGG - chr8_1:88491232-88491251 Msa1223870:five_prime_UTR 45.0%
!! GTGGTAGTGGTGGAAGTAGA+CGG - chr8_1:88485482-88485501 Msa1223870:three_prime_UTR 50.0%
CTTCATTCTTCATGGACCGG+TGG - chr8_1:88485721-88485740 Msa1223870:CDS 50.0%
TCAGTGGGAACAAACACTCG+CGG - chr8_1:88485960-88485979 Msa1223870:intron 50.0%
GTCCAAGACGTTTCATACGC+AGG - chr8_1:88486341-88486360 Msa1223870:intron 50.0%
AGCCTGCGTATGAAACGTCT+TGG + chr8_1:88486346-88486365 None:intergenic 50.0%
!! CAAAGGGTTGGTGTTGGTTC+AGG - chr8_1:88486506-88486525 Msa1223870:intron 50.0%
GGTGGTAAGCAACACAACCA+CGG + chr8_1:88486692-88486711 None:intergenic 50.0%
TCTTGTTCTTGTCCTGCTGC+TGG + chr8_1:88486713-88486732 None:intergenic 50.0%
! GAAAGATAGAGAGAGCACGC+AGG + chr8_1:88486873-88486892 None:intergenic 50.0%
AGCCATGATGATATTCCCGG+AGG - chr8_1:88487079-88487098 Msa1223870:intron 50.0%
CACCTCCGGGAATATCATCA+TGG + chr8_1:88487084-88487103 None:intergenic 50.0%
CGTAGTCTTCTTTCACCTCC+GGG + chr8_1:88487097-88487116 None:intergenic 50.0%
GGAGGTGAAAGAAGACTACG+AGG - chr8_1:88487097-88487116 Msa1223870:intron 50.0%
ACTGCGTGCTGGACTGTTTA+TGG - chr8_1:88487199-88487218 Msa1223870:intron 50.0%
! GCTGAGGGAGTGGTTTCTTT+TGG - chr8_1:88487256-88487275 Msa1223870:intron 50.0%
! TGGCAAAAAGCGCATGTGGT+TGG + chr8_1:88488117-88488136 None:intergenic 50.0%
! TTTTTCCACCAGGACACAGC+TGG + chr8_1:88488705-88488724 None:intergenic 50.0%
GTGTGAAACCTGCTCAGCTA+TGG + chr8_1:88488797-88488816 None:intergenic 50.0%
GATCTTGATTGGATGCTGCG+TGG - chr8_1:88488892-88488911 Msa1223870:intron 50.0%
GTTCTGCAGAGCTGTCACAA+AGG + chr8_1:88489201-88489220 None:intergenic 50.0%
TCTGTAACCACCTTGCCCTT+AGG - chr8_1:88489229-88489248 Msa1223870:CDS 50.0%
ATTGAGACCTAAGGGCAAGG+TGG + chr8_1:88489239-88489258 None:intergenic 50.0%
AACAAATCAGGGACAGGGAC+GGG - chr8_1:88489463-88489482 Msa1223870:CDS 50.0%
ACGGGAACAGCCAAATGACT+TGG - chr8_1:88489481-88489500 Msa1223870:CDS 50.0%
GGCCAAACCAACAACACTAC+AGG + chr8_1:88489595-88489614 None:intergenic 50.0%
AGAAGAGAGGGCTTGAAAGC+AGG + chr8_1:88489624-88489643 None:intergenic 50.0%
TTGGGGACACACAGAAGAGA+GGG + chr8_1:88489636-88489655 None:intergenic 50.0%
CATATGCAGTGTGACCTGCT+GGG - chr8_1:88489720-88489739 Msa1223870:CDS 50.0%
GAGCAACATCCATGGATGAG+AGG + chr8_1:88489907-88489926 None:intergenic 50.0%
CTAGGGATCTTGGAACTGGA+CGG + chr8_1:88490117-88490136 None:intergenic 50.0%
AGAGCTAGGGATCTTGGAAC+TGG + chr8_1:88490121-88490140 None:intergenic 50.0%
ATGAGGAGAGCTAGGGATCT+TGG + chr8_1:88490127-88490146 None:intergenic 50.0%
TACTGCCTTGGCTTCTTGAC+AGG - chr8_1:88490197-88490216 Msa1223870:CDS 50.0%
GAGGAGGTTCCCTCAAATAG+TGG + chr8_1:88490301-88490320 None:intergenic 50.0%
GGTTGAGTGGGAGCGATATA+AGG + chr8_1:88490358-88490377 None:intergenic 50.0%
CCCATCTGTTGTCCTCTAGT+TGG - chr8_1:88491067-88491086 Msa1223870:five_prime_UTR 50.0%
!! ATAGCTGCTGGTTCGTCATC+GGG - chr8_1:88491233-88491252 Msa1223870:five_prime_UTR 50.0%
!!! GTTGTCGTTTTCGCCGTCGT+CGG + chr8_1:88485510-88485529 None:intergenic 55.0%
CATTCTTCATGGACCGGTGG+TGG - chr8_1:88485724-88485743 Msa1223870:CDS 55.0%
!! GGTGGTGGTGTTGGTTCTAG+CGG - chr8_1:88485745-88485764 Msa1223870:CDS 55.0%
GAACAAACACTCGCGGAGTG+TGG - chr8_1:88485967-88485986 Msa1223870:intron 55.0%
GCTCGATTCCAGTCCTCACA+GGG + chr8_1:88486656-88486675 None:intergenic 55.0%
TGCTCGATTCCAGTCCTCAC+AGG + chr8_1:88486657-88486676 None:intergenic 55.0%
GACTGGAATCGAGCAGCAAC+AGG - chr8_1:88486662-88486681 Msa1223870:intron 55.0%
! TGTTGCTTACCACCAGCAGC+AGG - chr8_1:88486698-88486717 Msa1223870:intron 55.0%
TGTTCTTGTCCTGCTGCTGG+TGG + chr8_1:88486710-88486729 None:intergenic 55.0%
AGTCCAGCACGCAGTGATTC+GGG + chr8_1:88487194-88487213 None:intergenic 55.0%
CAGTCCAGCACGCAGTGATT+CGG + chr8_1:88487195-88487214 None:intergenic 55.0%
AATGAAGAAGCCACTGGCCC+CGG - chr8_1:88487230-88487249 Msa1223870:intron 55.0%
AAACCACTCCCTCAGCACAC+CGG + chr8_1:88487252-88487271 None:intergenic 55.0%
AAAGCGATCCAGCTGTGTCC+TGG - chr8_1:88488694-88488713 Msa1223870:intron 55.0%
GGGCTTGAAAGCAGGCAATC+CGG + chr8_1:88489616-88489635 None:intergenic 55.0%
GTTGGGGACACACAGAAGAG+AGG + chr8_1:88489637-88489656 None:intergenic 55.0%
CCAGCAGGTCACACTGCATA+TGG + chr8_1:88489722-88489741 None:intergenic 55.0%
CCATATGCAGTGTGACCTGC+TGG - chr8_1:88489719-88489738 Msa1223870:CDS 55.0%
GAGTGGGCCGTAGTGAAAAG+TGG + chr8_1:88489779-88489798 None:intergenic 55.0%
GTGCGACATCCTCTCATCCA+TGG - chr8_1:88489895-88489914 Msa1223870:CDS 55.0%
GGTTGCATTGCACTGAGGGT+TGG + chr8_1:88489954-88489973 None:intergenic 55.0%
!! GAAGTAGACGGCACCGACGA+CGG - chr8_1:88485494-88485513 Msa1223870:exon 60.0%
! TCTTCATGGACCGGTGGTGG+TGG - chr8_1:88485727-88485746 Msa1223870:CDS 60.0%
ACCAACACCACCACCACCAC+CGG + chr8_1:88485740-88485759 None:intergenic 60.0%
!! GGTGGTGTTGGTTCTAGCGG+CGG - chr8_1:88485748-88485767 Msa1223870:CDS 60.0%
GATCCCGAATCACTGCGTGC+TGG - chr8_1:88487188-88487207 Msa1223870:intron 60.0%
AACCACTCCCTCAGCACACC+GGG + chr8_1:88487251-88487270 None:intergenic 60.0%
! CTGGTTCGTCATCGGGAGTG+TGG - chr8_1:88491240-88491259 Msa1223870:five_prime_UTR 60.0%
!! TCATGGACCGGTGGTGGTGG+TGG - chr8_1:88485730-88485749 Msa1223870:CDS 65.0%
!! ACCGGTGGTGGTGGTGGTGT+TGG - chr8_1:88485736-88485755 Msa1223870:CDS 65.0%
!! GTTGGTTCTAGCGGCGGCGA+TGG - chr8_1:88485754-88485773 Msa1223870:intron 65.0%
TCATACGCAGGCTGCGCGTG+TGG - chr8_1:88486353-88486372 Msa1223870:intron 65.0%
GAGCAGCAACAGGCTCTCCG+TGG - chr8_1:88486672-88486691 Msa1223870:intron 65.0%
AGAGGGCCGACGAACACCAG+TGG - chr8_1:88487009-88487028 Msa1223870:intron 65.0%
ACCACTCCCTCAGCACACCG+GGG + chr8_1:88487250-88487269 None:intergenic 65.0%
GCGATCCAGCTGTGTCCTGG+TGG - chr8_1:88488697-88488716 Msa1223870:intron 65.0%
! GGTTCTAGCGGCGGCGATGG+TGG - chr8_1:88485757-88485776 Msa1223870:intron 70.0%
! TCTAGCGGCGGCGATGGTGG+TGG - chr8_1:88485760-88485779 Msa1223870:intron 70.0%
CACTGGCCCCGGTGTGCTGA+GGG - chr8_1:88487241-88487260 Msa1223870:intron 70.0%
GCAGGCTGCGCGTGTGGCGT+TGG - chr8_1:88486359-88486378 Msa1223870:intron 75.0%
CCTCAGCACACCGGGGCCAG+TGG + chr8_1:88487243-88487262 None:intergenic 75.0%
CCACTGGCCCCGGTGTGCTG+AGG - chr8_1:88487240-88487259 Msa1223870:intron 75.0%
GCCCCGGTGTGCTGAGGGAG+TGG - chr8_1:88487246-88487265 Msa1223870:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 88485147 88491339 88485147 ID=Msa1223870;Name=Msa1223870
chr8_1 mRNA 88485147 88491339 88485147 ID=Msa1223870-mRNA-1;Parent=Msa1223870;Name=Msa1223870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=415|1|1|1|1|1|3|361|884
chr8_1 exon 88485147 88485771 88485147 ID=Msa1223870-mRNA-1:exon:32146;Parent=Msa1223870-mRNA-1
chr8_1 exon 88487478 88488070 88487478 ID=Msa1223870-mRNA-1:exon:32145;Parent=Msa1223870-mRNA-1
chr8_1 exon 88489127 88491339 88489127 ID=Msa1223870-mRNA-1:exon:32144;Parent=Msa1223870-mRNA-1
chr8_1 five_prime_UTR 88490925 88491339 88490925 ID=Msa1223870-mRNA-1:five_prime_utr;Parent=Msa1223870-mRNA-1
chr8_1 CDS 88489127 88490924 88489127 ID=Msa1223870-mRNA-1:cds;Parent=Msa1223870-mRNA-1
chr8_1 CDS 88487478 88488070 88487478 ID=Msa1223870-mRNA-1:cds;Parent=Msa1223870-mRNA-1
chr8_1 CDS 88485508 88485771 88485508 ID=Msa1223870-mRNA-1:cds;Parent=Msa1223870-mRNA-1
chr8_1 three_prime_UTR 88485147 88485507 88485147 ID=Msa1223870-mRNA-1:three_prime_utr;Parent=Msa1223870-mRNA-1
Gene Sequence

>Msa1223870

ATGACTCCGATCGAAAGCCCTAACCTTTTTCAACAACAACAACAACAACAAAATCGTTCTTCGTCCAAACGAAAATTAGACGAAGACGACGAAAACAACGCGTTAGATGATGACTTAGTCTATGTTAGAATGAGAAAAGACGAAACCACAAAAACAACTCTTCATTCTTCATGGACCGGTGGTGGTGGTGGTGTTGGTTCTAGCGGCGGCGATGGTGGTGGTGTTTTCTCTAAGAAAAAATCACCTATTCATTTCTTCATTCGAATGATGTCAAAAGGATACAACGTTGTTATACACGCTTATCCAGAAGAAACAGTGAAATCAATTCACGAACGAATTGAAGAAATGAAAGGAATTCCTCTTTTTGAACAGAGGTTGATTTTCAATGGTAAACAGCTTCAGTGGGAACAAACACTCGCGGAGTGTGGAATTCAAAACGACGCTAATCTTCACCTTGTTGGTCGAATGCGTAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTATTGTTTATGATCTTTGTCATGGTGTTAATCTTCCTGACGCTGTTAAATCTATTAAGAGTTTGCTTACTACTTATATTAATTTGGCTTTGGCACCTAAACCTAAACTTGATGCTGATTCTGCTACTAGTTATTTTCAGATTTTCATGAATTCTTCCGCCATTTCCGTTCTTGTTACCTTGTATGTTTCACCTTATACGGGGAATAAGGCTTGTTCTGATACTTGTATTAAGCATTTTTTGAATGGTTGTAAAACCTCATTGTCCAAGACGTTTCATACGCAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGTAGAGTTGGGACTAATGATCCTTTGTATCTTTTTTGTCGTACTAGTTTGGGGTTTTTTTTGGAAGCTGCTGAAATTTCACTTGCGGCATCTGAGGATGAGAATCACAAAGGGTTGGTGTTGGTTCAGGATTTGTTTCCGTTTGTTCGTGAACTTGCTGATAGTTTGTTGAGGAATTTGGATTTGAGCTTGGAATCCCCTTCCCTTGCTAATCCTTTGTTGAACAATGTTGAGGATTTTCAAGCCTTTTTAGTCCCTGTGAGGACTGGAATCGAGCAGCAACAGGCTCTCCGTGGTTGTGTTGCTTACCACCAGCAGCAGGACAAGAACAAGAATGGATTAGTTGCTGAAGAGATTGAATACCTTCGTCTGTTGTACAATCAGTTGTTGTCCAAAATTGATACTTGCCTTCAAAAAATGGACAAGAGATTCACTGACAAGGAAATGGTGTTTGAGGAAAATTATTTTTATCCTGCGTGCTCTCTCTATCTTTCAATTTTGAAGGAATTGCATAAGATTTCTAAGCTTTATGATGGTGCTACAGAAGAGCTCTGTCATGTTTTGATGTGTCGAAAGAGTGTGATGTGTCTGATCATCGTTAAATATGCAAAGAGGGCCGACGAACACCAGTGGATTCTTGAGTACAAGAATGTCACCAATTTCGAAGCTAGGAGGCATTTAGCCATGATGATATTCCCGGAGGTGAAAGAAGACTACGAGGAGTTGCATGAGATGCTCATTGACAGGTCTCAGCTGTTAACTGAATCTTTTGAATACATTGCACGGGCTGATCCCGAATCACTGCGTGCTGGACTGTTTATGGAATTCAAAAATGAAGAAGCCACTGGCCCCGGTGTGCTGAGGGAGTGGTTTCTTTTGGTTTGTCAGGCACTTTTCAATCAGGAACATGCTCTTTTTGTTGCCTGCCCAAAAGATCGAACAAGATTTCTCCCCAATTCTGCTTCCAAGGTACAACATAATCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTTGGTATTGTTTTTGATCGCGTGTTTTTCTTGCAATTGGCTGGAAAGCCTATTACTTTAGAAGACATAAAGGATGCAGATCCTGACCTATATAGAAGCTGCAAGCAAATATTGGAGATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTATTAGAGAAGTGGAGGAATTAGGACAGAGGAAAGCGATCCAGCTGTGTCCTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACATCCATAGCTGAGCAGGTTTCACACTTTGCCAAAGGTTTTGCTGAGATTCTTTCAAGTTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGTCTGAAGATCTTGATTGGATGCTGCGTGGGAGTGAAGATGCCATTTCCGTCGAAGATTGGAAAGCACACACTGAGTATAATGGCTATACAGACACAGATATTCAGATATCTTGGTTTTGGGAGATAGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTTCGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAATCTGGTGATCGTCTTCCTTCATCTCATACATGCTTTTATCGGCTGTGTTTCCCAGCTTATTCATCTATGCCTGTCATGCAAGCTCGTCTTAAAGTCATTACCCAAGAACATATTGGCTCTAGTTTTGGTACTTGGTGA
Protein sequence

>Msa1223870

MTPIESPNLFQQQQQQQNRSSSKRKLDEDDENNALDDDLVYVRMRKDETTKTTLHSSWTGGGGGVGSSGGDGGGVFSKKKSPIHFFIRMMSKGYNVVIHAYPEETVKSIHERIEEMKGIPLFEQRLIFNGKQLQWEQTLAECGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINLALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTGNKACSDTCIKHFLNGCKTSLSKTFHTQAARVALEFCKLLSRVGTNDPLYLFCRTSLGFFLEAAEISLAASEDENHKGLVLVQDLFPFVRELADSLLRNLDLSLESPSLANPLLNNVEDFQAFLVPVRTGIEQQQALRGCVAYHQQQDKNKNGLVAEEIEYLRLLYNQLLSKIDTCLQKMDKRFTDKEMVFEENYFYPACSLYLSILKELHKISKLYDGATEELCHVLMCRKSVMCLIIVKYAKRADEHQWILEYKNVTNFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVCQALFNQEHALFVACPKDRTRFLPNSASKVQHNLHLEYFSFCGRVIALALMHKVQVGIVFDRVFFLQLAGKPITLEDIKDADPDLYRSCKQILEMDSDFIDSDALGLTFIREVEELGQRKAIQLCPGGKNIVVNSKNRVKYVDLLIKDRFVTSIAEQVSHFAKGFAEILSSSKLQQFFFQSLESEDLDWMLRGSEDAISVEDWKAHTEYNGYTDTDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFRGLGSRLHIYKSHESGDRLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHIGSSFGTW*