AlfalfaGEDB | MS.gene013307

M. sativa cultivar XinJiangDaYe / MS.gene013307

KEGG: K07910
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013307.t1	XP_003602624.1	99.5	205	1	0	1	205	1	205	1.20E-111	413.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013307.t1	O23657	83.2	202	34	0	3	204	4	205	1.9e-94	347.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013307.t1	G7JBL5	99.5	205	1	0	1	205	1	205	8.5e-112	413.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001096	MS.gene013307	PPI
MS.gene004991	MS.gene013307	PPI
MS.gene006087	MS.gene013307	PPI
MS.gene011573	MS.gene013307	PPI
MS.gene013307	MS.gene07529	PPI
MS.gene013307	MS.gene060519	PPI
MS.gene013307	MS.gene025879	PPI
MS.gene013307	MS.gene20024	PPI
MS.gene013307	MS.gene065824	PPI
MS.gene013307	MS.gene003990	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013307.t1	MTR_3g096350	99.512	205	1	0	1	205	1	205	1.84e-150	423
MS.gene013307.t1	MTR_8g093740	90.777	206	18	1	1	205	1	206	6.81e-136	386
MS.gene013307.t1	MTR_1g029450	85.859	198	27	1	8	204	13	210	2.35e-123	354
MS.gene013307.t1	MTR_8g093740	91.566	166	14	0	40	205	8	173	5.01e-110	319
MS.gene013307.t1	MTR_7g103070	68.528	197	61	1	10	205	14	210	5.83e-99	292
MS.gene013307.t1	MTR_1g062760	69.543	197	60	0	9	205	11	207	1.27e-98	291
MS.gene013307.t1	MTR_3g096350	99.231	130	1	0	1	130	1	130	2.36e-91	271
MS.gene013307.t1	MTR_3g096350	99.231	130	1	0	1	130	1	130	8.08e-91	269
MS.gene013307.t1	MTR_1g090717	68.715	179	54	1	9	185	12	190	1.11e-85	258
MS.gene013307.t1	MTR_7g103070	68.627	153	48	0	53	205	2	154	3.23e-78	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene013307.t1	AT1G43890	84.343	198	30	1	1	197	1	198	1.94e-121	349
MS.gene013307.t1	AT1G43890	84.343	198	30	1	1	197	1	198	1.94e-121	349
MS.gene013307.t1	AT1G43890	84.343	198	30	1	1	197	1	198	1.94e-121	349
MS.gene013307.t1	AT5G03530	66.667	204	67	1	1	203	1	204	2.11e-100	296
MS.gene013307.t1	AT5G03530	66.667	204	67	1	1	203	1	204	2.11e-100	296
MS.gene013307.t1	AT3G09910	65.969	191	64	1	1	190	1	191	3.12e-83	252
MS.gene013307.t1	AT3G09910	65.969	191	64	1	1	190	1	191	3.12e-83	252
MS.gene013307.t1	AT3G09910	65.969	191	64	1	1	190	1	191	3.12e-83	252
MS.gene013307.t1	AT3G09910	64.706	187	62	2	1	183	1	187	1.56e-77	237
MS.gene013307.t1	AT3G09910	64.706	187	62	2	1	183	1	187	1.56e-77	237

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Find 90 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGAAGCTTGCCATT+TGG	0.375583	3.4:+87253182	MS.gene013307:CDS
AAAGTTGAAGCTTGCCATTT+GGG	0.377111	3.4:+87253183	MS.gene013307:CDS
AAATAGTAATGGAGCGGTTA+TGG	0.340510	3.4:+87258940	MS.gene013307:CDS
AAATTAGAGTCGAACTTAAC+CGG	0.444861	3.4:+87258792	MS.gene013307:CDS
AACACGTAATCAAATTCCTG+AGG	0.656951	3.4:-87252948	None:intergenic
AACAGAGGGGCGATGGAGAA+TGG	0.485998	3.4:+87258833	MS.gene013307:CDS
AACCGGAGAAATCAAGATGG+AGG	0.650085	3.4:+87258809	MS.gene013307:CDS
AACGGAAAATAGTAATGGAG+CGG	0.647194	3.4:+87258934	MS.gene013307:CDS
AAGAATCAGAGGTGAAACAG+AGG	0.609684	3.4:-87253019	None:intergenic
AAGAGGGAATAGACTTTGCA+AGG	0.523660	3.4:+87256783	MS.gene013307:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	87252933	87260156	87252933	ID=MS.gene013307
chr3.4	mRNA	87252933	87260156	87252933	ID=MS.gene013307.t1;Parent=MS.gene013307
chr3.4	exon	87252933	87253065	87252933	ID=MS.gene013307.t1.exon1;Parent=MS.gene013307.t1
chr3.4	CDS	87252933	87253065	87252933	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87253143	87253211	87253143	ID=MS.gene013307.t1.exon2;Parent=MS.gene013307.t1
chr3.4	CDS	87253143	87253211	87253143	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87253330	87253395	87253330	ID=MS.gene013307.t1.exon3;Parent=MS.gene013307.t1
chr3.4	CDS	87253330	87253395	87253330	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87256072	87256193	87256072	ID=MS.gene013307.t1.exon4;Parent=MS.gene013307.t1
chr3.4	CDS	87256072	87256193	87256072	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87256758	87256886	87256758	ID=MS.gene013307.t1.exon5;Parent=MS.gene013307.t1
chr3.4	CDS	87256758	87256886	87256758	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87257416	87257509	87257416	ID=MS.gene013307.t1.exon6;Parent=MS.gene013307.t1
chr3.4	CDS	87257416	87257509	87257416	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87258720	87259146	87258720	ID=MS.gene013307.t1.exon7;Parent=MS.gene013307.t1
chr3.4	CDS	87258720	87259146	87258720	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1
chr3.4	exon	87260084	87260156	87260084	ID=MS.gene013307.t1.exon8;Parent=MS.gene013307.t1
chr3.4	CDS	87260084	87260156	87260084	ID=cds.MS.gene013307.t1;Parent=MS.gene013307.t1

Gene Sequence

>MS.gene013307

ATGGATTCGAGTACGCCTCAGGAATTTGATTACGTGTTCAAACTCTTGATGATTGGAGACTCCGGTGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATTCTTTTGAAAATCTCTCTCCTACAATCGGTGAGTCACTCACTTTTTTCCTTATTCATTTCATTCTTCACGTCATTATATTCATAATCAACCATTGCATTGTGTAGGTGTTGATTTTAAGGTCAAATACGTCACTATAGATGGTAAAAAGTTGAAGCTTGCCATTTGGGATACAGGTCTCAACAATACTTTGTGTTTATTCATTTTTCATTTTTATTTATTTATGATTCACTTTAGTAGTGTTTAAATGTACTATATATGATATGATGATACGATGATTAATTAATTATGCAGCTGGTCAAGAGAGATTCAGAACACTAACTAGTTCTTATTATCGAGGCGCTCAAGGGATCATTATGGGTGAGTTTCATTTCTTTATATGTTGATCTATTATTTCTCATGAATCTTAGAATATCACTTCAATCTTATTGTGAGTGTTGAAACCCATTTATGTAGCTCTTTATAACTTAACCATACATTAATGATTGTTTCGAACCTGGAGAAATTGGCATGAGAGAAATATAGAAAGGATAAAAGAAAATAAAACTGCGTTATAGAAAACTGAACAGAAAATAGAGAATAGGTTCTCCTCAAGGGTTTCCGTCCACAACGAACACTAACAATGTTTAAATCAAATACATAATTCTCTGGGCATTATTGTAGCTTTAGGAGAATAACTTAATGATGCCTCCCAAAATTTCTTTACATTCCATTGTTTGTAACTTTGTATAGTCCACAACAGGATCCAAATAGGTTACAATGGCAATAGCTTTGTGATTATCCCTGGTTTATGTTGTTGAAAGAATGACCGTCTTCCCTCCTTGTACTCCATAGACTTCGTCGATTAAGTCCAACAATAAGTTAGGTTGGTAGGCGTTGCTGGTTATCCTTCTCTCATGGATCTCATCATCGACATGCATTTGGGTATGGCCCATTAGGTCAAGCATGGAATGCCGATCCCTCCCATTTGTTTTTTTGCTCATTAAAATCACATTTGCAATATTATATGCCCATTGTGACTCTTTGAACAATGACCTAATTGCTATCATAACTGGGCTAGCATCTTGTAGCTTCGACAGGATGTGTATATTACTAGACTCAGTGTTACCTGGATCTCTTTGGGCACTGTAAGTGAATCAACTCCCGATAGTTCTAGTGGAGGCAGTGGGTTTACCTGGATTGTCCAAGACTCAAATTTTCAAGGTTTTCACTCCTCTTTTCTCATACCACACCCTCACAGTATCCATATATTGAGTTTCCTTCCCTGTTTTACCTCTCACCTCTGTATGGTTACATCTTTCTTCCGTTCTCTTTTCTCCTTGTTTCTTCCTTGCCACAATTTCCATATTATTCCTTGTTGCATCAACATGAATAATCGAATTGGCTTCTAATTGGTTGTGGTCAGTGCCTTCTCCACCATCGCCATCCACCTTAAATACAAGAATCTTTACCACTAGGTAGAGCTCCGATTCTATCCTTGTGTTTGCTTGTTCCTGTGGCTTCATCTATTGAGAACCTTTCAGTGACACAGGCTGATGGAGTGGTCCTATATCACCCATCTTTCTTGCCCATGAACGGTCTTGTCGCTGCCACACTCAGACTTACTATGATCATTTGAGGTTTCTTTGGTCTTCTTCATTCCACCTAGAATTTGTAGGTTGAACCCATCATCCTCCCTTGTCAATCCCTATTTTTACATTAGACAACAAAGAGCTGTGTTGATTTCATCTATTTCACCGAGTCTCGCCTTGATCTCCAACAGCTGAGCCTGAGACCCATGTTCATTGGTCACCTCATTCGATTTTTCCATTGTATGCTCCACAGTTTTTGTTCGGTTACGAATTCCCTTTGGTCTTCTTACTCTCAAAATTCCACCCTTTCTCTTCAATATCAAGTTTCTGTTTCTCCGTCTCTTGACCATTGTATTTTTTGGTTACTCCAATCCCTTTGACATTCTTTTTGATCATAGTGGTTCCCACCTCCCATTTTTTCATCACAATCGATTCCTTGCATCTTAATGAACTAATACGACGTCTTCTTGGTTCAAGAAATGCCAGACTTCAGTGCACAAGGGTAATCCATGATTGTTGGTCTCCTCTTTCAATGACACTGTCACCTTCATTTCTCCTCCAATAATAGTTTTACAAGTTTGGATCACTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGTTAAGATCACTTTGATTTAAATTCAGAGAAACTATAATGAAAGAAAGATAGAAATGATAAAACATATAGAAGCGTATTATTGAAAAGTGAACAGAAAGCGAAGAATGGAATTCTTCTCAAGGGTTCCCCTTCACATTCCTTTCACAACAACTATCAGATGTACAAAATGACTCCTTCTATCCTAACTTACTAACAAACCTTACTTATCCCAACCTTTTTAACTTATCTTTATTGATACAACATCTTTTCGATTTCATAAATGTTAGACTCCGACAGACATGGCTGCAATCCATTATCATTGCCTCCTTCAATGACACAGCTGCCACCTTCATTTCTCCCTCAGCCAAAGATCTGGCAGGTCGGACCAATTTATTGGGAACCAGAAAAAGTTGTAATGGAAGCAAGATAGATTCAAATTAGTAGAAGTGTGTTATTGAAAATTATGCTGGAGATGGAGAATATTATTTTTTTCCAAGGGTTTCCCCTCCACAAAGGATTTCTCTTTTCACAGCAACTATTCCTATTTATAATCCCTTCAAACTTAAGTATTTCCAACGGCGACTCCACTCTATTATTCTAAATATGATATTGACAGGTGTACACTATTAAATATACTTTCTTACCTATATCATGCTATGGCTTGTTAAGTAAGTGCTCTTTCATCTAATGGAGCTGTGGCGGCAATTCAATAACCAACTAAAATTTTCATTGAATTTATTAACTGAATTCACCTGGAAATTTGCATTATGCTGACTGTCTGTGGAATTTAGGAAACTGTAGATGAACTGTTGAAATTTTGTTTTGTTTAACTGCATTTCATTCCTTAAACTGCTGCAGCTTACGATGTTACTCGACGAGATACATTTACAAATCTCTCAGAAGTATGGGCTAAGGAAGTAGACCTTTATTCAACAAATCAGGACTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGGTATACTCTTTTAGGACGTCTACAATTATCTCAAGGTTTTCATTTGAGTACTTCGCCTTTATTTTTATGGACAAAGCATGATTCCTGAACGTTCTATCAGAAGTTTCTCCCCTCCCATTTGTCATGGAATATACTTGTTTTTCTGATTTCAACATAGGCGTGACTTGGGAGGAAATCTATGTGTGGTTTCTATTATTGAATGTCACAAAGGGGATTTTATGGAGAGCTTTTTTTGGGCTAGCATACTTGTCTATCGTCTGTTTTGTTGTGTTTTCAGTTTCAATTTTAGTGACTTGTGAGGAAGTCTCTGTAGTTGGATAGTCATCATCCTTCGATTATTATTTAAATAAGAAACGTAAGTTTTTGTATGATTTTACATAGTATTTAAATTAAATGTAAATAATGAATGGTCCATTATTTCCATTGTGGCCCATTAAGAATCATCATTGTTCTGATTTATGCATTGAATTAGAGCATCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCATGCATCCAACTAGAGGAGTTGACATGCAAATGGATAATATTTGCTTCGCAGGAGAGTGACAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCAAGGGAATATGGTTGCCTGTTTATTGAATGCAGTGCTAAGACTCGAGTTAATGTACAACATTGCTTTGAAGAGCTAGTTTTGAAGGTATGTTGAGAACACGTTTGCCTATTTTCTTACATTATCTTTGTATCTTATTGGTCTGCTGCATATTATTATTATTATTCCTTTAACCATACTACTTCCAAGCAGACACACTGACACATTAAAACTTCTGACCAGACCAGTATTAAAGTTTCTTATTGGTCTGCTGCATATTATTACTCCCTCATCATCAGTATAAATTTAAAGATCATAATTTGTTCCTCTTAACTCTTATAACATGTTAATCCTTTCGAATTTCCATAGATACGCCTCCTATTTATAATTGGGAAAGACACAAACGTTTAATTGAAAAAAAAGTCCCCACAGCTGCTGTAGGGGGTATCCAAACACGCCAACCATATCATCTGTTTCTGATGAGACACAAATTGGAAACATTAAGAAAAAATGGTACATGGGAGAAATGGATTTGAATTGCATATTTTGAGTTGTGATAATCAAACATGCTAACATCATGGAATACAAGCATATTTTGTTATAACATATGTAAATTTTGGTCTTTATACGTACCCAGATTTTGGACACACCTAGCCTCCTAGCCGAAGGTTCTAAAGGGAACAAAAAGAACATTTTTAAGGACAAGCCCCAGTCCGATGCATCCACAAGTGGTTGTTGCTAAGAAGATGCTATTTCACTCAAAGTCAAAACTCAGTAGTGTCGATGAAGATTGCAAAGAAAAGGGTGTTCATCGAGTACTTTTTCAGAGTTTTAACACACGCTAGCTTATTGGTTACTATTTAGCAGCAGCTGAAGTGTTAAAAAGCAAAGAACCCAGGCTCCTGATTTGTCTGGAATATTTGTAATATAATGATTATGGTTTTATATTTATTTGGATTATAATGTTATTATATGTTATGGAATCCAACTTTAGTTGTATACACCGTTTGGACAAAAAGGTGTCGTTTTTATTTGGATGGAAAAAAGAAGAGAAACTTGGACAAAGGTGTCGTGTACCTTTTGTTCAGTCTAAACTCTAAAGAGCATTATGGGTGTCTGTTTGATTCAACTATAACGGGACTTTTAACGTTGGTTTCCGTTGACCCTTCTGATAAATATTACACACACACAAAAAAAAAAAAGACAACTAGAATTATTATAAAGAAAAAAAAAAGAATGAATAAAGGAATAACAATGTTGCGGTGTTGCCATTATTACAAAAAATAAAAATCAACAAATAGCGTTTGCAATAGAGTGAAAGTGTGTTTAGAAGTCAAAACTTATTGAAAGAAGAAAACTTTGAATAAATATTACGTCACACGTTATCAGAGTTAATCTAACATGTTAAAAAAATTCCAAGAATTCATTTTAATAAAATTAATGTAAATTTAAAACGACTCGTACATGGCACACAATTAAGATCTAGTAAAAAGAAAAATAGACAAAATTAAAATAAAGATACCCGGTAACTTTTATTTGGGAGATGATATTTGTAGAAAAATGTTTTTTGAACATCTAAAAATTGAACCTATTCAACACGGTATAAAAATACATCATTTATAAACTATTGATATGACAATAAGAGAGAAAAAAACTAATAAAAAATGAAATCATATCTACAACTTTATATAGTGTGTGTTTGATACAGAGTTAAAAGCCCCAAAAGCACGGTGGGCGTGATTTTCAAAGCAATACTACCGTGATTTTATGAAGCTAGCTTTTGGAGCTTTTGGGCCACCGTGATTTCCTACTGTGGTTTTGAAAAAATTAAGCCCTTCCAAACACACACATAAATAGAACAATTTTTTTTATCCAATTAACATTTCTAATATTCGTAATACCTTATACCTAGTTTTTTCTGTTATTATTGTGGAATGCTAGGACATACTGAAGATTCATGCGAGAGTTTGTATGCTGTGGAAGAAGATGACGGTGTTAGAAACTGGGGTCCTGAAATTAGAGTCGAACTTAACCGGAGAAATCAAGATGGAGGTAACAGAGGGGCGATGGAGAATGGTGCAGCTTCAGGTCAGAAGCCGGTGCAGGGAGGAGAATCATCATTGAATGCCGCATTGATTATGGGAAATAAAAGTGTAACGGAAAATAGTAATGGAGCGGTTATGGCAGCCCAACCAAATAGAAAAGATATGATGGCAGAATTAATCAAGAAGCAGGCAAAACTGAAAACAGTAAAAAAGGAAAGGATTTTCAATTACTCTCCAATAATTGCAGAACAGGCAGGTGGGGCGGCGCAGACAGAAAGTGTAACGGAAAATGAAGCAGAATTTGTTGAGTCTGAAAAAAAGAGGTTTAGGGATGGCAGAAGCAAAGACATGGTTGAGGAGGGCATTGATAATAACAAAAAAAATAATTTCATGCAAGTAGAAGAGACAGTGCAGAACACAGCAAAAACACAACAAATTCATTTTTTATCGGCGGGTCCTGGCAATCAGGCCTGCCGGAAACAATGAGTGTCCTGAGCTGGAATTGCCGGGGATTGGGCAACCCGAGTGCAGTTCCAACCCTTAGAGATTTGGCCCGTAAGTACCGAGTAGGGGTTCTTTTTCTTTGTGAGACTTTAGTTCATACTAATAGAATAGAGGACATCAGAGTCAGGTTGGGTTTTGATGCTTCATTTGCAGTTGATACAATTGGGAGAAGTGGAGGATTAGCGATCCTGTGGAAACATCCGTTCGATTGTCACCTTATAAATTACTCTCAAAATTTTATCAATATGGAAGTGACTCATCCGCATTACTCAAAATGGAGGTTTACAGGTTTTTATGGATGCCCGGAAAGTGAAAGAAGGCGTGAGTCTTGGGACTTGCTTCGTACACTTTCACAAGATAATGCTTTGCCATGGTGTATTATGGGGGACTTTAACGATATTCTATCCAATGAAGAAAAAAGAAGCAACATTGATCATCCACCGTGGAGGATAAGGGGATTTCGAGAGGCTGTACAAGATAGTAACTTGATCGACTTGCATCTAACAGGATATCCGTTTACTTGGGTGAAGGGAAGAGGCAGCCAAGATAGAAAAGAAGAGAAGTTGGATAGAGCAATGGCAACACAAGAGTGGTGTGATATGTTTCCGCAATTTCATCTCCAAAATATTATATCACATCGCTCCGACCATTTCCCAATTTTGCTGAAGCTTCAAGAAACCACACGAAGATCGGGGGTGAAGGATTTCAAGTTTGAGAATGCTTGGCTAATGGAAGAGGGGTTTACGGATATAGTAGTTGGAGGGTGGGAGAGAAGCTTGGATGTAAATGTGTTGTCAAGGCTGAAGTGTTGCACCGATATTATGAATGA

Protein sequence

>MS.gene013307.t1

MDSSTPQEFDYVFKLLMIGDSGVGKSSLLLCFTSDSFENLSPTIGVDFKVKYVTIDGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMAYDVTRRDTFTNLSEVWAKEVDLYSTNQDCIKMLVGNKVDKESDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQHCFEELVLKILDTPSLLAEGSKGNKKNIFKDKPQSDASTSGHTEDSCESLYAVEEDDGVRNWGPEIRVELNRRNQDGGNRGAMENGAASGQKPVQGGESSLNAALIMGNKSVTENSNGAVMAAQPNRKDMMAELIKKQAKLKTVKKERIFNYSPIIAEQAGGAAQTESVTENEAEFVESEKKSWRVGEKLGCKCVVKAEVLHRYYE