AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026674

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026674.t1 MTR_1g029450 99.535 215 1 0 1 215 1 215 1.56e-160 442
MS.gene026674.t1 MTR_8g093740 85.990 207 28 1 7 213 3 208 3.50e-133 372
MS.gene026674.t1 MTR_3g096350 83.495 206 33 1 8 213 3 207 1.04e-127 358
MS.gene026674.t1 MTR_8g093740 85.799 169 23 1 45 213 8 175 4.35e-106 303
MS.gene026674.t1 MTR_7g103070 67.327 202 65 1 14 214 13 214 1.20e-103 298
MS.gene026674.t1 MTR_1g062760 66.500 200 67 0 14 213 11 210 3.93e-102 294
MS.gene026674.t1 MTR_1g090717 61.215 214 79 2 3 214 1 212 1.98e-91 267
MS.gene026674.t1 MTR_7g103070 67.516 157 51 0 58 214 2 158 2.89e-82 242
MS.gene026674.t1 MTR_3g096350 82.353 136 22 1 8 141 3 138 8.77e-79 233
MS.gene026674.t1 MTR_3g096350 85.938 128 18 0 8 135 3 130 1.47e-78 232
MS.gene026674.t1 MTR_7g081700 57.647 170 69 3 13 181 4 171 1.70e-58 183
MS.gene026674.t1 MTR_8g006970 56.000 175 74 3 13 186 4 176 6.90e-58 181
MS.gene026674.t1 MTR_2g005500 49.020 204 97 5 13 214 5 203 3.46e-57 180
MS.gene026674.t1 MTR_8g006970 49.751 201 96 4 15 214 20 216 6.22e-56 177
MS.gene026674.t1 MTR_1g068740 44.545 220 109 7 3 214 1 215 1.25e-54 174
MS.gene026674.t1 MTR_1g068730 44.091 220 110 7 3 214 1 215 4.13e-54 172
MS.gene026674.t1 MTR_1g115325 45.714 210 101 7 13 214 11 215 3.93e-53 170
MS.gene026674.t1 MTR_7g100020 49.438 178 82 5 13 184 11 186 8.19e-52 166
MS.gene026674.t1 MTR_2g096550 43.137 204 113 3 13 214 11 213 2.67e-51 165
MS.gene026674.t1 MTR_8g031660 42.157 204 111 4 16 214 5 206 2.88e-51 165
MS.gene026674.t1 MTR_6g021790 49.405 168 82 3 14 180 3 168 1.24e-50 163
MS.gene026674.t1 MTR_2g027660 49.375 160 78 3 14 172 3 160 1.24e-48 158
MS.gene026674.t1 MTR_6g079550 49.708 171 83 3 15 184 10 178 2.25e-48 158
MS.gene026674.t1 MTR_4g063160 43.810 210 106 8 13 214 11 216 1.51e-47 155
MS.gene026674.t1 MTR_2g090865 44.976 209 106 6 13 214 7 213 1.62e-47 155
MS.gene026674.t1 MTR_8g031870 47.468 158 80 3 16 172 5 160 8.93e-47 153
MS.gene026674.t1 MTR_2g014990 40.092 217 106 6 13 214 9 216 1.73e-46 153
MS.gene026674.t1 MTR_4g088090 42.932 191 95 4 13 191 9 197 2.21e-46 153
MS.gene026674.t1 MTR_2g083860 48.214 168 84 3 13 179 9 174 4.65e-46 152
MS.gene026674.t1 MTR_8g027220 46.429 168 87 3 13 179 22 187 7.56e-46 152
MS.gene026674.t1 MTR_2g005510 40.000 210 115 5 13 213 11 218 1.62e-45 150
MS.gene026674.t1 MTR_4g079350 42.932 191 95 4 13 191 9 197 2.08e-45 150
MS.gene026674.t1 MTR_3g069510 42.077 183 100 4 13 191 8 188 3.51e-45 149
MS.gene026674.t1 MTR_2g075950 45.833 168 88 3 13 179 9 174 5.94e-45 149
MS.gene026674.t1 MTR_8g089985 38.679 212 116 5 14 213 14 223 6.91e-45 149
MS.gene026674.t1 MTR_7g051940 42.202 218 93 7 16 214 12 215 1.47e-44 148
MS.gene026674.t1 MTR_4g064897 40.761 184 103 4 13 192 8 189 1.59e-44 148
MS.gene026674.t1 MTR_8g031680 39.904 208 114 5 16 214 5 210 1.96e-44 147
MS.gene026674.t1 MTR_3g086980 37.264 212 120 5 13 213 12 221 2.73e-44 147
MS.gene026674.t1 MTR_1g068730 46.250 160 82 4 3 160 1 158 1.23e-43 144
MS.gene026674.t1 MTR_8g036220 41.204 216 109 6 15 214 14 227 1.58e-43 146
MS.gene026674.t1 MTR_1g078200 41.026 195 103 4 15 208 12 195 2.04e-43 145
MS.gene026674.t1 MTR_1g068740 45.963 161 81 5 3 160 1 158 2.16e-43 144
MS.gene026674.t1 MTR_8g031830 42.458 179 97 4 16 193 5 178 1.81e-42 142
MS.gene026674.t1 MTR_0262s0050 42.262 168 94 3 13 179 11 176 6.97e-42 141
MS.gene026674.t1 MTR_8g107070 47.059 170 87 3 13 181 10 177 1.06e-41 142
MS.gene026674.t1 MTR_1g052475 37.037 216 119 7 13 214 11 223 9.54e-41 138
MS.gene026674.t1 MTR_4g099470 52.273 132 61 2 48 179 16 145 1.08e-40 137
MS.gene026674.t1 MTR_7g405790 42.353 170 95 3 16 184 14 181 1.84e-38 132
MS.gene026674.t1 MTR_7g117910 43.836 146 79 3 13 157 16 159 2.84e-36 127
MS.gene026674.t1 MTR_5g076590 37.056 197 115 6 19 214 12 200 4.46e-36 125
MS.gene026674.t1 MTR_1g094220 40.237 169 96 5 19 185 33 198 3.62e-35 123
MS.gene026674.t1 MTR_3g064390 35.533 197 118 6 19 214 12 200 5.96e-35 123
MS.gene026674.t1 MTR_1g094220 40.000 160 92 4 19 176 33 190 2.83e-34 121
MS.gene026674.t1 MTR_2g102060 39.873 158 92 3 19 175 12 167 3.19e-34 121
MS.gene026674.t1 MTR_8g103550 38.272 162 97 3 19 179 11 170 8.58e-34 120
MS.gene026674.t1 MTR_1g094220 39.752 161 93 4 19 177 33 191 2.50e-33 119
MS.gene026674.t1 MTR_4g098950 38.994 159 94 3 18 175 10 166 6.86e-33 118
MS.gene026674.t1 MTR_1g094220 37.640 178 105 5 19 192 33 208 1.47e-32 118
MS.gene026674.t1 MTR_8g090215 37.736 159 96 3 18 175 10 166 3.79e-32 116
MS.gene026674.t1 MTR_5g013900 38.365 159 95 3 18 175 10 166 4.90e-32 115
MS.gene026674.t1 MTR_3g087160 37.278 169 103 3 18 185 10 176 5.38e-32 115
MS.gene026674.t1 MTR_4g069850 36.842 171 100 5 17 180 8 177 7.73e-29 107
MS.gene026674.t1 MTR_8g092020 39.444 180 94 7 1 172 1 173 9.98e-29 107
MS.gene026674.t1 MTR_2g101890 34.653 202 106 6 17 211 10 192 8.96e-28 104
MS.gene026674.t1 MTR_4g012940 33.663 202 108 6 17 211 8 190 5.00e-27 102
MS.gene026674.t1 MTR_2g005500 34.804 204 86 5 13 214 5 163 1.45e-26 100
MS.gene026674.t1 MTR_1g097420 37.423 163 94 5 17 172 8 169 1.97e-26 101
MS.gene026674.t1 MTR_3g064390 40.000 130 75 3 19 147 12 139 1.35e-25 97.8
MS.gene026674.t1 MTR_3g107717 36.813 182 106 7 7 185 2 177 2.01e-25 99.0
MS.gene026674.t1 MTR_3g107707 36.813 182 106 7 7 185 2 177 2.29e-25 99.0
MS.gene026674.t1 MTR_3g107713 36.813 182 106 7 7 185 2 177 2.60e-25 99.0
MS.gene026674.t1 MTR_2g090875 31.250 176 106 5 17 180 6 178 2.30e-23 93.2
MS.gene026674.t1 MTR_3g078260 29.064 203 126 6 8 198 2 198 6.45e-23 92.4
MS.gene026674.t1 MTR_6g087980 30.726 179 109 5 17 183 6 181 7.62e-23 92.0
MS.gene026674.t1 MTR_4g073250 29.609 179 111 5 17 183 6 181 3.51e-22 90.1
MS.gene026674.t1 MTR_8g075240 31.250 176 106 5 17 180 6 178 4.09e-21 87.0
MS.gene026674.t1 MTR_1g097420 34.545 165 98 6 15 172 35 196 5.08e-21 87.8
MS.gene026674.t1 MTR_4g088055 29.651 172 106 5 17 176 6 174 6.99e-21 86.7
MS.gene026674.t1 MTR_5g022600 30.682 176 107 5 17 180 6 178 1.02e-20 86.3
MS.gene026674.t1 MTR_6g039490 36.196 163 96 6 17 172 8 169 1.40e-20 86.3
MS.gene026674.t1 MTR_4g113620 34.568 162 93 5 18 179 14 162 3.24e-19 82.4
MS.gene026674.t1 MTR_8g031810 42.553 94 39 2 16 108 5 84 7.47e-18 75.9
MS.gene026674.t1 MTR_3g078260 32.824 131 81 4 8 137 2 126 7.94e-16 72.0
MS.gene026674.t1 MTR_1452s0010 45.588 68 36 1 47 114 12 78 5.83e-13 63.2
MS.gene026674.t1 MTR_5g078090 31.034 174 97 9 14 176 16 177 2.26e-12 63.5
MS.gene026674.t1 MTR_1686s0010 36.250 80 49 2 37 115 1 79 1.32e-11 59.3
MS.gene026674.t1 MTR_8g091980 30.675 163 83 6 19 153 23 183 4.68e-11 61.6
MS.gene026674.t1 MTR_8g091980 30.675 163 83 6 19 153 23 183 5.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026674.t1 AT1G43890 85.354 198 29 0 7 204 3 200 4.00e-126 355
MS.gene026674.t1 AT1G43890 85.354 198 29 0 7 204 3 200 4.00e-126 355
MS.gene026674.t1 AT1G43890 85.354 198 29 0 7 204 3 200 4.00e-126 355
MS.gene026674.t1 AT5G03530 66.827 208 69 0 7 214 3 210 1.86e-109 313
MS.gene026674.t1 AT5G03530 66.827 208 69 0 7 214 3 210 1.86e-109 313
MS.gene026674.t1 AT3G09910 63.462 208 70 2 7 214 3 204 2.56e-89 261
MS.gene026674.t1 AT3G09910 63.462 208 70 2 7 214 3 204 2.56e-89 261
MS.gene026674.t1 AT3G09910 63.462 208 70 2 7 214 3 204 2.56e-89 261
MS.gene026674.t1 AT3G09910 64.865 185 62 1 7 188 3 187 4.58e-81 240
MS.gene026674.t1 AT3G09910 64.865 185 62 1 7 188 3 187 4.58e-81 240
MS.gene026674.t1 AT1G02130 48.768 203 99 4 13 214 4 202 5.25e-57 179
MS.gene026674.t1 AT5G47200 48.276 203 99 5 13 214 4 201 2.58e-56 177
MS.gene026674.t1 AT4G17530 48.276 203 99 5 13 214 4 201 4.30e-56 177
MS.gene026674.t1 AT4G35860 48.925 186 88 4 14 194 3 186 5.44e-54 172
MS.gene026674.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.43e-53 171
MS.gene026674.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.43e-53 171
MS.gene026674.t1 AT3G53610 46.860 207 100 7 13 213 11 213 1.43e-53 171
MS.gene026674.t1 AT5G59840 46.377 207 101 7 13 213 11 213 2.99e-53 170
MS.gene026674.t1 AT3G09900 47.170 212 100 7 12 215 10 217 1.73e-52 168
MS.gene026674.t1 AT3G11730 45.320 203 108 3 13 214 4 204 1.99e-52 168
MS.gene026674.t1 AT5G03520 45.161 217 107 6 6 215 4 215 2.09e-52 168
MS.gene026674.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.61e-52 167
MS.gene026674.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.61e-52 167
MS.gene026674.t1 AT3G46060 45.894 207 102 7 13 213 11 213 5.61e-52 167
MS.gene026674.t1 AT4G17160 42.439 205 112 4 14 214 3 205 1.44e-50 163
MS.gene026674.t1 AT4G39990 42.105 209 109 5 15 213 15 221 5.11e-50 162
MS.gene026674.t1 AT4G17170 49.375 160 78 3 14 172 3 160 2.65e-49 160
MS.gene026674.t1 AT2G33870 41.706 211 112 5 13 214 9 217 1.32e-47 156
MS.gene026674.t1 AT5G60860 43.455 191 94 4 13 191 9 197 2.94e-46 152
MS.gene026674.t1 AT4G18430 41.429 210 113 4 13 214 9 216 3.82e-46 152
MS.gene026674.t1 AT1G18200 48.214 168 84 3 13 179 9 174 4.10e-46 152
MS.gene026674.t1 AT1G09630 40.000 210 116 4 13 214 8 215 4.30e-46 152
MS.gene026674.t1 AT1G73640 48.214 168 84 3 13 179 9 174 5.06e-46 152
MS.gene026674.t1 AT1G28550 47.024 168 86 3 13 179 9 174 5.49e-46 152
MS.gene026674.t1 AT1G16920 47.619 168 85 3 13 179 9 174 6.87e-46 151
MS.gene026674.t1 AT5G45750 47.024 168 86 3 13 179 9 174 8.17e-46 151
MS.gene026674.t1 AT3G07410 41.627 209 111 4 15 214 10 216 1.18e-45 151
MS.gene026674.t1 AT1G06400 47.619 168 85 3 13 179 9 174 1.86e-45 150
MS.gene026674.t1 AT3G15060 45.087 173 92 3 13 184 9 179 8.90e-45 149
MS.gene026674.t1 AT4G18800 41.546 207 114 4 13 214 9 213 1.07e-44 148
MS.gene026674.t1 AT2G43130 40.777 206 114 5 15 214 10 213 1.53e-44 148
MS.gene026674.t1 AT1G05810 45.029 171 91 3 15 184 10 178 1.87e-44 148
MS.gene026674.t1 AT5G47520 44.444 171 92 3 15 184 12 180 3.81e-44 147
MS.gene026674.t1 AT1G05810 45.029 171 91 3 15 184 56 224 5.25e-44 148
MS.gene026674.t1 AT5G65270 41.176 170 97 3 13 181 13 180 6.33e-44 147
MS.gene026674.t1 AT1G07410 40.217 184 104 4 13 192 8 189 1.21e-43 145
MS.gene026674.t1 AT3G46830 42.197 173 97 3 13 184 8 178 6.72e-43 144
MS.gene026674.t1 AT3G46830 42.197 173 97 3 13 184 8 178 6.72e-43 144
MS.gene026674.t1 AT3G12160 38.208 212 119 6 13 214 11 220 7.56e-43 144
MS.gene026674.t1 AT2G31680 45.783 166 87 3 15 179 10 173 8.92e-43 144
MS.gene026674.t1 AT1G01200 44.706 170 90 4 13 180 24 191 1.37e-42 144
MS.gene026674.t1 AT5G47960 36.620 213 122 6 13 214 11 221 3.41e-42 142
MS.gene026674.t1 AT5G59150 41.040 173 99 3 13 184 8 178 7.00e-42 141
MS.gene026674.t1 AT5G03520 42.373 177 91 5 45 215 34 205 1.19e-37 130
MS.gene026674.t1 AT4G39890 38.251 183 109 3 18 197 10 191 1.22e-37 130
MS.gene026674.t1 AT4G35860 50.407 123 59 2 58 180 2 122 1.73e-36 126
MS.gene026674.t1 AT3G54840 39.429 175 99 5 6 175 19 191 2.55e-34 121
MS.gene026674.t1 AT4G19640 36.041 197 117 6 19 214 12 200 2.61e-34 121
MS.gene026674.t1 AT5G45130 36.041 197 117 6 19 214 12 200 2.70e-34 121
MS.gene026674.t1 AT3G54840 40.506 158 90 4 20 175 2 157 9.66e-34 119
MS.gene026674.t1 AT5G10260 39.623 159 93 3 18 175 10 166 1.79e-33 119
MS.gene026674.t1 AT3G54840 40.764 157 89 4 19 173 35 189 4.73e-33 118
MS.gene026674.t1 AT5G45130 35.385 195 117 6 21 214 22 208 1.16e-32 117
MS.gene026674.t1 AT2G44610 38.994 159 94 3 18 175 10 166 1.44e-32 117
MS.gene026674.t1 AT2G22290 39.623 159 93 3 18 175 10 166 3.01e-32 116
MS.gene026674.t1 AT3G18820 39.024 164 92 5 17 173 8 170 3.52e-29 108
MS.gene026674.t1 AT5G64990 37.821 156 94 3 18 172 8 161 7.44e-29 107
MS.gene026674.t1 AT1G52280 35.149 202 105 6 17 211 8 190 9.31e-29 107
MS.gene026674.t1 AT4G09720 39.264 163 91 5 17 172 8 169 1.94e-28 106
MS.gene026674.t1 AT1G22740 38.037 163 93 5 17 172 8 169 3.46e-28 105
MS.gene026674.t1 AT3G16100 35.149 202 105 6 17 211 8 190 8.46e-28 104
MS.gene026674.t1 AT4G09720 38.690 168 90 6 17 172 8 174 9.54e-28 104
MS.gene026674.t1 AT1G49300 38.037 163 93 5 17 172 8 169 1.30e-27 104
MS.gene026674.t1 AT1G49300 38.037 163 93 5 17 172 8 169 1.30e-27 104
MS.gene026674.t1 AT5G39620 37.647 170 98 5 18 180 6 174 2.01e-27 103
MS.gene026674.t1 AT2G21880 37.805 164 92 6 17 172 9 170 7.61e-27 102
MS.gene026674.t1 AT4G09720 36.782 174 91 6 17 172 8 180 9.30e-27 102
MS.gene026674.t1 AT5G55080 39.024 164 92 6 18 179 14 171 2.74e-26 101
MS.gene026674.t1 AT5G64990 36.196 163 94 4 18 172 8 168 3.91e-26 100
MS.gene026674.t1 AT5G59150 38.211 123 74 2 57 179 2 122 2.29e-25 97.4
MS.gene026674.t1 AT4G19640 39.844 128 74 3 19 145 12 137 1.04e-24 95.1
MS.gene026674.t1 AT4G19640 39.098 133 78 3 19 150 12 142 1.57e-24 95.9
MS.gene026674.t1 AT2G44690 31.667 180 108 5 17 184 18 194 1.65e-24 96.3
MS.gene026674.t1 AT5G20010 35.789 190 105 8 7 185 2 185 3.54e-24 95.9
MS.gene026674.t1 AT5G55190 37.356 174 100 7 9 179 4 171 4.86e-24 95.5
MS.gene026674.t1 AT5G20020 36.932 176 102 7 7 179 2 171 6.89e-24 95.1
MS.gene026674.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.85e-23 91.7
MS.gene026674.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.85e-23 91.7
MS.gene026674.t1 AT4G35020 30.168 179 110 5 17 183 6 181 9.85e-23 91.7
MS.gene026674.t1 AT3G51300 31.034 174 105 5 19 180 8 178 1.27e-22 91.3
MS.gene026674.t1 AT3G48040 30.526 190 113 7 8 185 2 184 7.60e-22 89.4
MS.gene026674.t1 AT4G28950 29.379 177 112 5 17 183 6 179 9.78e-22 89.0
MS.gene026674.t1 AT2G17800 30.114 176 108 5 17 180 6 178 1.99e-21 88.2
MS.gene026674.t1 AT2G17800 30.114 176 108 5 17 180 6 178 1.99e-21 88.2
MS.gene026674.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.16e-21 87.4
MS.gene026674.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.16e-21 87.4
MS.gene026674.t1 AT4G09720 40.458 131 71 4 48 172 6 135 2.16e-21 87.4
MS.gene026674.t1 AT1G20090 29.545 176 109 5 17 180 5 177 2.40e-21 87.8
MS.gene026674.t1 AT1G75840 29.545 176 109 5 17 180 6 178 2.75e-21 87.8
MS.gene026674.t1 AT4G35950 29.545 176 109 5 17 180 6 178 1.06e-20 86.3
MS.gene026674.t1 AT5G62880 29.189 185 113 6 8 180 2 180 3.90e-20 85.1
MS.gene026674.t1 AT5G45970 28.488 172 108 5 17 176 6 174 6.51e-20 84.0
MS.gene026674.t1 AT3G48040 30.939 181 106 7 8 175 2 176 9.09e-20 83.2
MS.gene026674.t1 AT2G21880 38.636 132 72 5 48 172 16 145 1.42e-19 82.8
MS.gene026674.t1 AT2G21880 38.636 132 72 5 48 172 16 145 1.42e-19 82.8
MS.gene026674.t1 AT2G21880 32.927 164 92 7 17 172 9 162 1.46e-17 77.8
MS.gene026674.t1 AT5G62880 30.000 170 101 6 8 165 2 165 1.92e-17 77.4
MS.gene026674.t1 AT3G51290 29.605 152 93 4 40 180 631 779 2.25e-15 74.7
MS.gene026674.t1 AT4G35020 34.483 116 72 3 19 133 8 120 3.06e-15 70.5
MS.gene026674.t1 AT4G35020 34.483 116 72 3 19 133 8 120 3.06e-15 70.5
MS.gene026674.t1 AT5G46025 35.577 104 66 1 78 181 6 108 3.63e-15 69.3
MS.gene026674.t1 AT5G37680 29.545 176 97 9 14 176 16 177 1.20e-12 64.3
MS.gene026674.t1 AT3G49870 32.934 167 95 9 18 176 1 158 2.34e-12 63.2
MS.gene026674.t1 AT3G49870 32.749 171 98 9 14 176 16 177 3.90e-12 62.8
MS.gene026674.t1 AT5G67560 32.749 171 98 9 14 176 16 177 4.32e-12 62.8
MS.gene026674.t1 AT5G64813 28.221 163 87 6 19 153 24 184 7.46e-11 60.8
MS.gene026674.t1 AT5G64813 28.221 163 87 6 19 153 24 184 7.46e-11 60.8
MS.gene026674.t1 AT5G64813 28.221 163 87 6 19 153 24 184 7.46e-11 60.8
MS.gene026674.t1 AT3G22950 28.244 131 87 3 18 148 18 141 9.31e-11 59.3
MS.gene026674.t1 AT3G22950 28.244 131 87 3 18 148 18 141 9.31e-11 59.3

Find 39 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATGATTGGTGATTC+TGG 0.217855 1.2:+15345812 MS.gene026674:CDS
TTACAAATCTATCTGATATA+TGG 0.238643 1.2:+15348714 MS.gene026674:CDS
AGAAGTTAAAACTTGCTATA+TGG 0.282325 1.2:+15347224 MS.gene026674:CDS
GAAAGGTTTCGAACACTTAC+TGG 0.285773 1.2:+15347366 MS.gene026674:CDS
GTGGACTTTGCAAGGCAATA+TGG 0.296394 1.2:+15348960 MS.gene026674:CDS
CTCCTGGCTGAGGGCTCATC+TGG 0.330734 1.2:+15349167 MS.gene026674:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1.2:+15347401 MS.gene026674:CDS
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1.2:+15348932 MS.gene026674:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1.2:+15345754 None:intergenic
GAAGTTAAAACTTGCTATAT+GGG 0.357838 1.2:+15347225 MS.gene026674:CDS
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1.2:+15345803 MS.gene026674:CDS
GATTGCATCAAGATGCTTGT+TGG 0.386118 1.2:+15348770 MS.gene026674:CDS
TACAAATCTATCTGATATAT+GGG 0.407172 1.2:+15348715 MS.gene026674:CDS
TTCTTCTCGTGCAGCTGGAC+AGG 0.417456 1.2:+15347344 MS.gene026674:intron
GTTAAATATGTTACACTTGG+TGG 0.437372 1.2:+15347199 MS.gene026674:CDS
TACACCAAGCCTCCTGGCTG+AGG 0.454373 1.2:+15349157 MS.gene026674:CDS
ATGATTGGTGATTCTGGTGT+TGG 0.454677 1.2:+15345818 MS.gene026674:CDS
GAAGATCTTTCTCCCACCAT+TGG 0.467139 1.2:+15345881 MS.gene026674:CDS
TGGACTTTGCAAGGCAATAT+GGG 0.468552 1.2:+15348961 MS.gene026674:CDS
GAGCCCTCAGCCAGGAGGCT+TGG 0.469370 1.2:-15349161 None:intergenic
GGTGCACAAGGAATAATTAT+GGG 0.473429 1.2:+15347402 MS.gene026674:CDS
CTTACTGGTTCATATTATAG+AGG 0.473869 1.2:+15347381 MS.gene026674:CDS
TTGCACTGCATTCAGTATAG+AGG 0.489926 1.2:-15348986 None:intergenic
TTTGGATACACCAAGCCTCC+TGG 0.503438 1.2:+15349151 MS.gene026674:CDS
CACCTAGCAGCTGTTGCGCA+TGG 0.530235 1.2:+15349237 MS.gene026674:CDS
CACCAGATGAGCCCTCAGCC+AGG 0.548724 1.2:-15349169 None:intergenic
AGGAAGCGGTGGACTTTGCA+AGG 0.556741 1.2:+15348952 MS.gene026674:CDS
AAAGTTAAATATGTTACACT+TGG 0.573517 1.2:+15347196 MS.gene026674:CDS
CACCATGCGCAACAGCTGCT+AGG 0.581361 1.2:-15349239 None:intergenic
GGTGATGCATCAGACTCTTG+CGG 0.604993 1.2:-15349218 None:intergenic
ACACCAAGCCTCCTGGCTGA+GGG 0.615958 1.2:+15349158 MS.gene026674:CDS
CTCGTGCAGCTGGACAGGAA+AGG 0.620766 1.2:+15347349 MS.gene026674:intron
TTTGTGAACAAACCAATGGT+GGG 0.622071 1.2:-15345893 None:intergenic
AAACTTGCTATATGGGACAC+GGG 0.627855 1.2:+15347232 MS.gene026674:CDS
AAAACTTGCTATATGGGACA+CGG 0.637080 1.2:+15347231 MS.gene026674:CDS
TCATATTATAGAGGTGCACA+AGG 0.659834 1.2:+15347390 MS.gene026674:CDS
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1.2:+15348787 MS.gene026674:CDS
CAGATGAGCCCTCAGCCAGG+AGG 0.684281 1.2:-15349166 None:intergenic
GAACAAGTAATCGAATTCAG+CGG 0.723999 1.2:-15345786 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATTTATATTGCATT+GGG + chr1.2:15347007-15347026 MS.gene026674:intron 15.0%
!! TAAACAAATTTATATTGCAT+TGG + chr1.2:15347006-15347025 MS.gene026674:intron 15.0%
!!! AGTATTTCTTTTTATAAGAT+AGG + chr1.2:15348158-15348177 MS.gene026674:intron 15.0%
!!! CATATCATTATTATTTTAGA+AGG - chr1.2:15347729-15347748 None:intergenic 15.0%
!!! GTATTTCTTTTTATAAGATA+GGG + chr1.2:15348159-15348178 MS.gene026674:intron 15.0%
!! AAAATTGTACATCATATTCA+TGG - chr1.2:15347485-15347504 None:intergenic 20.0%
!! AAAGTTAAATATGTTACACT+TGG + chr1.2:15347196-15347215 MS.gene026674:CDS 20.0%
!! AACAAATTTATATTGCATTG+GGG + chr1.2:15347008-15347027 MS.gene026674:intron 20.0%
!! AATAGTAAACAAGCTAAAAA+AGG - chr1.2:15346830-15346849 None:intergenic 20.0%
!! ATCAATAACATTGGTATTAT+AGG - chr1.2:15347972-15347991 None:intergenic 20.0%
!! CATATATGGATATAAAGATT+GGG + chr1.2:15348199-15348218 MS.gene026674:intron 20.0%
!! TACAAATCTATCTGATATAT+GGG + chr1.2:15348715-15348734 MS.gene026674:CDS 20.0%
!! TACGTCTATATTAACATTAT+AGG - chr1.2:15346988-15347007 None:intergenic 20.0%
!! TATAATACCAATGTTATTGA+TGG + chr1.2:15347971-15347990 MS.gene026674:intron 20.0%
!! TCAATAACATTGGTATTATA+GGG - chr1.2:15347971-15347990 None:intergenic 20.0%
!! TTACAAATCTATCTGATATA+TGG + chr1.2:15348714-15348733 MS.gene026674:CDS 20.0%
!!! AACTATGAAAGTATAATAAC+AGG - chr1.2:15347634-15347653 None:intergenic 20.0%
!!! AGTGTATTACTTTTTTCAAA+AGG + chr1.2:15347808-15347827 MS.gene026674:intron 20.0%
!!! GATTTTTGTCAATTTATGTT+TGG + chr1.2:15346151-15346170 MS.gene026674:intron 20.0%
!!! TAAAAGCATTCAAACAAATT+AGG - chr1.2:15347510-15347529 None:intergenic 20.0%
!!! TGAAATTCTGTTATTTTCTT+GGG + chr1.2:15347291-15347310 MS.gene026674:intron 20.0%
!!! TTATTGTATCTTTTGCTTTT+TGG + chr1.2:15348494-15348513 MS.gene026674:intron 20.0%
!!! TTGAAATTCTGTTATTTTCT+TGG + chr1.2:15347290-15347309 MS.gene026674:intron 20.0%
! AAACTGACTGATAGATAAAT+GGG - chr1.2:15348627-15348646 None:intergenic 25.0%
! ACTTTCCTAAAATATGAGAT+AGG - chr1.2:15348913-15348932 None:intergenic 25.0%
! ATAAACTTATCAGTGAATCT+GGG + chr1.2:15348652-15348671 MS.gene026674:intron 25.0%
! ATCCAAAATGCATGAATAAA+AGG - chr1.2:15345943-15345962 None:intergenic 25.0%
! ATTACATTTAGAAGCAAAAC+AGG - chr1.2:15348575-15348594 None:intergenic 25.0%
! CAGAGTCAAAATCAAATTTA+GGG - chr1.2:15346336-15346355 None:intergenic 25.0%
! GACTAATAACTAATTCTTCA+GGG + chr1.2:15348353-15348372 MS.gene026674:intron 25.0%
! GCATATATGGATATAAAGAT+TGG + chr1.2:15348198-15348217 MS.gene026674:intron 25.0%
! TAAACTGACTGATAGATAAA+TGG - chr1.2:15348628-15348647 None:intergenic 25.0%
! TACTAAAGTCATTGCATATA+TGG + chr1.2:15348185-15348204 MS.gene026674:intron 25.0%
! TACTTTAACCTATAATTGAG+TGG - chr1.2:15347119-15347138 None:intergenic 25.0%
! TATAAACTTATCAGTGAATC+TGG + chr1.2:15348651-15348670 MS.gene026674:intron 25.0%
! TATACAGTGTTGTCAAATAT+CGG - chr1.2:15348114-15348133 None:intergenic 25.0%
! TCAAAACTTAACACAAAGTT+TGG - chr1.2:15348853-15348872 None:intergenic 25.0%
! TCAGAGTCAAAATCAAATTT+AGG - chr1.2:15346337-15346356 None:intergenic 25.0%
! TCCAAAATGCATGAATAAAA+GGG - chr1.2:15345942-15345961 None:intergenic 25.0%
! TGACTAATAACTAATTCTTC+AGG + chr1.2:15348352-15348371 MS.gene026674:intron 25.0%
! TGATGTGAAATTCTATCAAA+TGG + chr1.2:15346758-15346777 MS.gene026674:intron 25.0%
! TGATTTCAAGAAGCTAATAA+AGG + chr1.2:15346498-15346517 MS.gene026674:intron 25.0%
! TGCAAATGCAAATTCATAAA+TGG - chr1.2:15348817-15348836 None:intergenic 25.0%
! TGTTTCATCCAAAATATTGA+CGG - chr1.2:15347841-15347860 None:intergenic 25.0%
! TTTAAGAATTGAGTGTAAGA+TGG - chr1.2:15346965-15346984 None:intergenic 25.0%
! TTTACCATAAAAACACACAA+GGG - chr1.2:15347593-15347612 None:intergenic 25.0%
!! AAATCAGTATTTTCAGAAAG+TGG + chr1.2:15349085-15349104 MS.gene026674:intron 25.0%
!! GGAAGTAATGTTTCAATTTT+GGG + chr1.2:15349106-15349125 MS.gene026674:intron 25.0%
!! TGGAAGTAATGTTTCAATTT+TGG + chr1.2:15349105-15349124 MS.gene026674:intron 25.0%
!! TGTTACTAAGTTTCTCATTT+TGG + chr1.2:15347912-15347931 MS.gene026674:intron 25.0%
!! TTATTAGCTTCTTGAAATCA+CGG - chr1.2:15346498-15346517 None:intergenic 25.0%
!! TTTTACCATAAAAACACACA+AGG - chr1.2:15347594-15347613 None:intergenic 25.0%
!!! AGAAGTTAAAACTTGCTATA+TGG + chr1.2:15347224-15347243 MS.gene026674:CDS 25.0%
!!! AGACTTTTTGTACTTTTTCA+CGG + chr1.2:15346600-15346619 MS.gene026674:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG + chr1.2:15348917-15348936 MS.gene026674:intron 25.0%
!!! CGTACTATTAACATTGATTT+TGG + chr1.2:15346024-15346043 MS.gene026674:intron 25.0%
!!! GAAATAAAATCGATTAGCTT+AGG - chr1.2:15347668-15347687 None:intergenic 25.0%
!!! GAAGTTAAAACTTGCTATAT+GGG + chr1.2:15347225-15347244 MS.gene026674:CDS 25.0%
!!! TCAATATTTTGGATGAAACA+TGG + chr1.2:15347841-15347860 MS.gene026674:intron 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG + chr1.2:15348916-15348935 MS.gene026674:intron 25.0%
!!! TCGATTTTATTTCGAAATTC+AGG + chr1.2:15347675-15347694 MS.gene026674:intron 25.0%
!!! TTCTGAAAATACTGATTTTG+AGG - chr1.2:15349083-15349102 None:intergenic 25.0%
!!! TTTTGGCATTTGATAATCAT+TGG + chr1.2:15347929-15347948 MS.gene026674:intron 25.0%
AAAAAGTCTTCACATCTGTT+TGG - chr1.2:15346589-15346608 None:intergenic 30.0%
AAAATGCATGAATAAAAGGG+GGG - chr1.2:15345939-15345958 None:intergenic 30.0%
AAAGCTGAATAGTGAATTCA+GGG + chr1.2:15348453-15348472 MS.gene026674:intron 30.0%
AAGAAGCCATATGAATGTTA+CGG + chr1.2:15347056-15347075 MS.gene026674:intron 30.0%
AAGATATTGCATGAATGTAG+GGG + chr1.2:15346718-15346737 MS.gene026674:intron 30.0%
AATACCAATGTTATTGATGG+CGG + chr1.2:15347974-15347993 MS.gene026674:intron 30.0%
AATGACAAATTTGTGAAGGA+TGG - chr1.2:15348045-15348064 None:intergenic 30.0%
AATTTAAGGAATCAGAATCG+TGG + chr1.2:15346927-15346946 MS.gene026674:intron 30.0%
AATTTATATTGCATTGGGGA+AGG + chr1.2:15347012-15347031 MS.gene026674:intron 30.0%
AGAGTGACATAAAGTGATTT+AGG + chr1.2:15346104-15346123 MS.gene026674:intron 30.0%
ATTCTATCAAATGGCATTAG+TGG + chr1.2:15346767-15346786 MS.gene026674:intron 30.0%
CAAAATCTGGAAACAACAAA+AGG - chr1.2:15349135-15349154 None:intergenic 30.0%
CAAAATGCATGAATAAAAGG+GGG - chr1.2:15345940-15345959 None:intergenic 30.0%
CAAATCTTCTGTATTTGCAT+AGG - chr1.2:15347894-15347913 None:intergenic 30.0%
CAAGATATTGCATGAATGTA+GGG + chr1.2:15346717-15346736 MS.gene026674:intron 30.0%
CATATGGCTTCTTAAATGAA+AGG - chr1.2:15347049-15347068 None:intergenic 30.0%
CATATTGTACATACATCTTG+AGG - chr1.2:15348408-15348427 None:intergenic 30.0%
CCAAAATGCATGAATAAAAG+GGG - chr1.2:15345941-15345960 None:intergenic 30.0%
CCAAACATTAATCACATTTG+AGG + chr1.2:15346392-15346411 MS.gene026674:intron 30.0%
CCATACCAAAATCAAACTTA+CGG - chr1.2:15346249-15346268 None:intergenic 30.0%
CCATATTCTTCTTGAAATCA+TGG - chr1.2:15346551-15346570 None:intergenic 30.0%
CCATGATTTCAAGAAGAATA+TGG + chr1.2:15346548-15346567 MS.gene026674:intron 30.0%
CCTCAAATGTGATTAATGTT+TGG - chr1.2:15346395-15346414 None:intergenic 30.0%
GGGGAAAAACATTGAAATAA+GGG - chr1.2:15345920-15345939 None:intergenic 30.0%
GTACTTAAAACCTCAAATCT+AGG + chr1.2:15348242-15348261 MS.gene026674:intron 30.0%
GTTAAATATGTTACACTTGG+TGG + chr1.2:15347199-15347218 MS.gene026674:CDS 30.0%
TAACCTATAATTGAGTGGTA+GGG - chr1.2:15347114-15347133 None:intergenic 30.0%
TTAACCTATAATTGAGTGGT+AGG - chr1.2:15347115-15347134 None:intergenic 30.0%
TTGTTCAAGCTTCTTATGAT+TGG + chr1.2:15345803-15345822 MS.gene026674:CDS 30.0%
TTTAGAAGGAAATGTACAAG+AGG - chr1.2:15347715-15347734 None:intergenic 30.0%
! AAATTTGTCATTGCGGTTTT+CGG + chr1.2:15348053-15348072 MS.gene026674:intron 30.0%
! ACTTTGAAAGCTTAAACTGT+CGG + chr1.2:15348293-15348312 MS.gene026674:intron 30.0%
! CAAAGTATTTGATCATGACA+TGG - chr1.2:15348279-15348298 None:intergenic 30.0%
! GAATTATGCCGTCAATATTT+TGG + chr1.2:15347830-15347849 MS.gene026674:intron 30.0%
! GTTTGCCTATCTCATATTTT+AGG + chr1.2:15348905-15348924 MS.gene026674:intron 30.0%
!! AAGTTTGATTTTGGTATGGT+CGG + chr1.2:15346250-15346269 MS.gene026674:intron 30.0%
!! CTTACTGGTTCATATTATAG+AGG + chr1.2:15347381-15347400 MS.gene026674:CDS 30.0%
!! TGATATGTTCATTTTCAAGC+TGG + chr1.2:15347742-15347761 MS.gene026674:intron 30.0%
!! TTATCCCTTGTGTGTTTTTA+TGG + chr1.2:15347586-15347605 MS.gene026674:intron 30.0%
!!! ATTCTTTTTCGAGATTGAAG+TGG + chr1.2:15347774-15347793 MS.gene026674:intron 30.0%
!!! CATGCTGATTCAGTTTATTT+TGG + chr1.2:15347263-15347282 MS.gene026674:intron 30.0%
!!! CTTTTGTTGTTTCCAGATTT+TGG + chr1.2:15349133-15349152 MS.gene026674:intron 30.0%
!!! TAACATTGATTTTGGTCCTA+CGG + chr1.2:15346032-15346051 MS.gene026674:intron 30.0%
!!! TCTGTGTTTTTTCAATGTAG+CGG + chr1.2:15345969-15345988 MS.gene026674:intron 30.0%
AAGCTGAATAGTGAATTCAG+GGG + chr1.2:15348454-15348473 MS.gene026674:intron 35.0%
ACATCTGTTTGGATATGTGT+TGG - chr1.2:15346578-15346597 None:intergenic 35.0%
AGATATTGCATGAATGTAGG+GGG + chr1.2:15346719-15346738 MS.gene026674:intron 35.0%
AGGTGCACAAGGAATAATTA+TGG + chr1.2:15347401-15347420 MS.gene026674:CDS 35.0%
ATATTCATGGTATAGCAAGC+AGG - chr1.2:15347472-15347491 None:intergenic 35.0%
ATCTTCTGTATTTGCATAGG+AGG - chr1.2:15347891-15347910 None:intergenic 35.0%
ATTCAAACATGCACTCAAAG+TGG - chr1.2:15346219-15346238 None:intergenic 35.0%
CACAAACCGTAACATTCATA+TGG - chr1.2:15347065-15347084 None:intergenic 35.0%
CCTTCACAAATTTGTCATTG+CGG + chr1.2:15348046-15348065 MS.gene026674:intron 35.0%
CTACGAAATGGAGAATATCA+AGG - chr1.2:15347441-15347460 None:intergenic 35.0%
CTTAAAACCTCAAATCTAGG+AGG + chr1.2:15348245-15348264 MS.gene026674:intron 35.0%
GAAAGCTGAATAGTGAATTC+AGG + chr1.2:15348452-15348471 MS.gene026674:intron 35.0%
GAACAAGTAATCGAATTCAG+CGG - chr1.2:15345789-15345808 None:intergenic 35.0%
GAACTGTAAATCATGCAACA+TGG + chr1.2:15347537-15347556 MS.gene026674:intron 35.0%
GACTCTTATGAACATAATGC+AGG + chr1.2:15347163-15347182 MS.gene026674:intron 35.0%
GCAAGATATTGCATGAATGT+AGG + chr1.2:15346716-15346735 MS.gene026674:intron 35.0%
GGGGGAAAAACATTGAAATA+AGG - chr1.2:15345921-15345940 None:intergenic 35.0%
GGTGCACAAGGAATAATTAT+GGG + chr1.2:15347402-15347421 MS.gene026674:CDS 35.0%
TAACTAATTCTTCAGGGTCA+AGG + chr1.2:15348359-15348378 MS.gene026674:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG + chr1.2:15348787-15348806 MS.gene026674:CDS 35.0%
TTTGTGAACAAACCAATGGT+GGG - chr1.2:15345896-15345915 None:intergenic 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG + chr1.2:15349019-15349038 MS.gene026674:CDS 35.0%
! AATTCAATTTTCGTCACCGT+AGG - chr1.2:15346051-15346070 None:intergenic 35.0%
! CCCCTTTTATTCATGCATTT+TGG + chr1.2:15345938-15345957 MS.gene026674:intron 35.0%
! CTTCTTATGATTGGTGATTC+TGG + chr1.2:15345812-15345831 MS.gene026674:CDS 35.0%
! CTTTGAAAGCTTAAACTGTC+GGG + chr1.2:15348294-15348313 MS.gene026674:intron 35.0%
! TCATATTATAGAGGTGCACA+AGG + chr1.2:15347390-15347409 MS.gene026674:CDS 35.0%
! TTTTGTGAACAAACCAATGG+TGG - chr1.2:15345897-15345916 None:intergenic 35.0%
!! AAAACTTGCTATATGGGACA+CGG + chr1.2:15347231-15347250 MS.gene026674:CDS 35.0%
!! CCGTAAGTTTGATTTTGGTA+TGG + chr1.2:15346246-15346265 MS.gene026674:intron 35.0%
!! GCTCTAGAATTATTCGTTTG+AGG + chr1.2:15345993-15346012 MS.gene026674:intron 35.0%
!! TGAAGCCGTAAGTTTGATTT+TGG + chr1.2:15346241-15346260 MS.gene026674:intron 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG + chr1.2:15349034-15349053 MS.gene026674:CDS 35.0%
!!! ATACTGATTTTGAGGACATG+AGG - chr1.2:15349075-15349094 None:intergenic 35.0%
AAAGAGCTTCTCTCTCATAG+TGG + chr1.2:15346893-15346912 MS.gene026674:intron 40.0%
AAAGGACATGTGAGACAACA+AGG - chr1.2:15346812-15346831 None:intergenic 40.0%
AAGAGCTTCTCTCTCATAGT+GGG + chr1.2:15346894-15346913 MS.gene026674:intron 40.0%
AATAGTGAATTCAGGGGTCA+AGG + chr1.2:15348460-15348479 MS.gene026674:intron 40.0%
AGGAAGCTTCTGTAGTAATG+CGG + chr1.2:15346518-15346537 MS.gene026674:intron 40.0%
ATCATAGCCTCCTAGATTTG+AGG - chr1.2:15348255-15348274 None:intergenic 40.0%
CATCCCTACCACTCAATTAT+AGG + chr1.2:15347108-15347127 MS.gene026674:intron 40.0%
CCGCAATGACAAATTTGTGA+AGG - chr1.2:15348049-15348068 None:intergenic 40.0%
CTAGACTTGGAACCAAATGT+GGG + chr1.2:15346415-15346434 MS.gene026674:intron 40.0%
CTTTCCGCCATCAATAACAT+TGG - chr1.2:15347981-15348000 None:intergenic 40.0%
GAAAGGTTTCGAACACTTAC+TGG + chr1.2:15347366-15347385 MS.gene026674:CDS 40.0%
GACAAATTTGTGAAGGATGG+CGG - chr1.2:15348042-15348061 None:intergenic 40.0%
GATTGCATCAAGATGCTTGT+TGG + chr1.2:15348770-15348789 MS.gene026674:CDS 40.0%
GGGATGATAAAACAGCATCA+TGG - chr1.2:15347094-15347113 None:intergenic 40.0%
TGAAAGGGCTGTTACCAAAA+AGG + chr1.2:15348932-15348951 MS.gene026674:CDS 40.0%
TGAATGTTACGGTTTGTGTG+TGG + chr1.2:15347067-15347086 MS.gene026674:intron 40.0%
TGGACTTTGCAAGGCAATAT+GGG + chr1.2:15348961-15348980 MS.gene026674:CDS 40.0%
TTGCACTGCATTCAGTATAG+AGG - chr1.2:15348989-15349008 None:intergenic 40.0%
! ATCACATTTGAGGCTAGACT+TGG + chr1.2:15346402-15346421 MS.gene026674:intron 40.0%
! ATGATTGGTGATTCTGGTGT+TGG + chr1.2:15345818-15345837 MS.gene026674:CDS 40.0%
!! AAACTTGCTATATGGGACAC+GGG + chr1.2:15347232-15347251 MS.gene026674:CDS 40.0%
!! CGATTAGCTTAGGCTATACA+TGG - chr1.2:15347658-15347677 None:intergenic 40.0%
!! GGGTTTTGTGAACAAACCAA+TGG - chr1.2:15345900-15345919 None:intergenic 40.0%
!! TAGGAGGTTTGGTTTGGTTT+GGG + chr1.2:15346658-15346677 MS.gene026674:intron 40.0%
!! TGGGTGTTGGGAGAAATTTA+AGG + chr1.2:15346913-15346932 MS.gene026674:intron 40.0%
AAGCTTAAACTGTCGGGTGA+AGG + chr1.2:15348300-15348319 MS.gene026674:intron 45.0%
ACAGACGATTCACCCACATT+TGG - chr1.2:15346430-15346449 None:intergenic 45.0%
ATGTGGGTGAATCGTCTGTT+TGG + chr1.2:15346431-15346450 MS.gene026674:intron 45.0%
CAAAAATCCGACACATCCGA+CGG + chr1.2:15348002-15348021 MS.gene026674:intron 45.0%
CAGGAAAGGTAGCTACGAAA+TGG - chr1.2:15347453-15347472 None:intergenic 45.0%
CATGGTATAGCAAGCAGGAA+AGG - chr1.2:15347467-15347486 None:intergenic 45.0%
CGTCTGTTTGGATCTGTGTT+TGG + chr1.2:15346443-15346462 MS.gene026674:intron 45.0%
CTCGAAAGTTCCCATCTCAA+GGG - chr1.2:15346631-15346650 None:intergenic 45.0%
CTTGAGATGGGAACTTTCGA+GGG + chr1.2:15346630-15346649 MS.gene026674:intron 45.0%
GAAGATCTTTCTCCCACCAT+TGG + chr1.2:15345881-15345900 MS.gene026674:CDS 45.0%
GCTAGACTTGGAACCAAATG+TGG + chr1.2:15346414-15346433 MS.gene026674:intron 45.0%
GGCTGTTACCAAAAAGGAAG+CGG + chr1.2:15348938-15348957 MS.gene026674:CDS 45.0%
GTGGACTTTGCAAGGCAATA+TGG + chr1.2:15348960-15348979 MS.gene026674:CDS 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr1.2:15348108-15348127 None:intergenic 45.0%
GTTCACCTAACGTGAGTTTG+CGG + chr1.2:15346467-15346486 MS.gene026674:intron 45.0%
TGTTACCAAAAAGGAAGCGG+TGG + chr1.2:15348941-15348960 MS.gene026674:CDS 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr1.2:15348105-15348124 None:intergenic 45.0%
! AAAGTCCACCGCTTCCTTTT+TGG - chr1.2:15348949-15348968 None:intergenic 45.0%
! GTATTTTCTTCTCGTGCAGC+TGG + chr1.2:15347339-15347358 MS.gene026674:intron 45.0%
! GTTCACTAGGAGGTTTGGTT+TGG + chr1.2:15346652-15346671 MS.gene026674:intron 45.0%
!! AGGAGGTTTGGTTTGGTTTG+GGG + chr1.2:15346659-15346678 MS.gene026674:intron 45.0%
!! CTAGGAGGTTTGGTTTGGTT+TGG + chr1.2:15346657-15346676 MS.gene026674:intron 45.0%
!! GATTTTGAGGACATGAGGAG+AGG - chr1.2:15349070-15349089 None:intergenic 45.0%
!! GATTTTGGTATGGTCGGACT+CGG + chr1.2:15346256-15346275 MS.gene026674:intron 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG - chr1.2:15349148-15349167 None:intergenic 45.0%
!! TCTCTCTCATAGTGGGTGTT+GGG + chr1.2:15346901-15346920 MS.gene026674:intron 45.0%
!! TTCTCTCTCATAGTGGGTGT+TGG + chr1.2:15346900-15346919 MS.gene026674:intron 45.0%
!!! ATAATATTTTAAATAGATTA+TGG - chr1.2:15348544-15348563 None:intergenic 5.0%
ACTTTCGAGGGTTCACTAGG+AGG + chr1.2:15346642-15346661 MS.gene026674:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG + chr1.2:15346618-15346637 MS.gene026674:intron 50.0%
CCTCGAAAGTTCCCATCTCA+AGG - chr1.2:15346632-15346651 None:intergenic 50.0%
CCTTGAGATGGGAACTTTCG+AGG + chr1.2:15346629-15346648 MS.gene026674:intron 50.0%
GAATGTAGGGGGAAAGTGAC+AGG + chr1.2:15346730-15346749 MS.gene026674:intron 50.0%
GGAACTTTCGAGGGTTCACT+AGG + chr1.2:15346639-15346658 MS.gene026674:intron 50.0%
GGTGATGCATCAGACTCTTG+CGG - chr1.2:15349221-15349240 None:intergenic 50.0%
TCACGGAAAGACCCTTGAGA+TGG + chr1.2:15346617-15346636 MS.gene026674:intron 50.0%
TCGTTCCGCAAACTCACGTT+AGG - chr1.2:15346475-15346494 None:intergenic 50.0%
TTTGGATACACCAAGCCTCC+TGG + chr1.2:15349151-15349170 MS.gene026674:CDS 50.0%
! CGTCGGATGTGTCGGATTTT+TGG - chr1.2:15348004-15348023 None:intergenic 50.0%
! TCGGGTGAAGGCACAAAAGA+TGG + chr1.2:15348312-15348331 MS.gene026674:intron 50.0%
AATCCGACACATCCGACGGA+TGG + chr1.2:15348006-15348025 MS.gene026674:intron 55.0%
CGAGGGTTCACTAGGAGGTT+TGG + chr1.2:15346647-15346666 MS.gene026674:intron 55.0%
GGTCGGACTCGGAACTGATT+TGG + chr1.2:15346267-15346286 MS.gene026674:intron 55.0%
TTCTTCTCGTGCAGCTGGAC+AGG + chr1.2:15347344-15347363 MS.gene026674:intron 55.0%
! AGGAAGCGGTGGACTTTGCA+AGG + chr1.2:15348952-15348971 MS.gene026674:CDS 55.0%
!! CATGGCGGCATAGCGGATAT+CGG - chr1.2:15348090-15348109 None:intergenic 55.0%
ACACCAAGCCTCCTGGCTGA+GGG + chr1.2:15349158-15349177 MS.gene026674:CDS 60.0%
CACCATGCGCAACAGCTGCT+AGG - chr1.2:15349242-15349261 None:intergenic 60.0%
CACCTAGCAGCTGTTGCGCA+TGG + chr1.2:15349237-15349256 MS.gene026674:CDS 60.0%
CGATATCCGCTATGCCGCCA+TGG + chr1.2:15348088-15348107 MS.gene026674:intron 60.0%
CTCGTGCAGCTGGACAGGAA+AGG + chr1.2:15347349-15347368 MS.gene026674:intron 60.0%
GCACCATCCGTCGGATGTGT+CGG - chr1.2:15348012-15348031 None:intergenic 60.0%
TACACCAAGCCTCCTGGCTG+AGG + chr1.2:15349157-15349176 MS.gene026674:CDS 60.0%
TATCGGCCATGGCGGCATAG+CGG - chr1.2:15348097-15348116 None:intergenic 60.0%
! ACATCCGACGGATGGTGCTG+TGG + chr1.2:15348014-15348033 MS.gene026674:intron 60.0%
!! GGCATAGCGGATATCGGTGG+CGG - chr1.2:15348084-15348103 None:intergenic 60.0%
CACCAGATGAGCCCTCAGCC+AGG - chr1.2:15349172-15349191 None:intergenic 65.0%
CAGATGAGCCCTCAGCCAGG+AGG - chr1.2:15349169-15349188 None:intergenic 65.0%
CTCCTGGCTGAGGGCTCATC+TGG + chr1.2:15349167-15349186 MS.gene026674:CDS 65.0%
GGCACCACAGCACCATCCGT+CGG - chr1.2:15348021-15348040 None:intergenic 65.0%
!! GGCGGCATAGCGGATATCGG+TGG - chr1.2:15348087-15348106 None:intergenic 65.0%
GAGCCCTCAGCCAGGAGGCT+TGG - chr1.2:15349164-15349183 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 15345755 15349262 15345755 ID=MS.gene026674
chr1.2 mRNA 15345755 15349262 15345755 ID=MS.gene026674.t1;Parent=MS.gene026674
chr1.2 exon 15345755 15345902 15345755 ID=MS.gene026674.t1.exon1;Parent=MS.gene026674.t1
chr1.2 CDS 15345755 15345902 15345755 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
chr1.2 exon 15347185 15347253 15347185 ID=MS.gene026674.t1.exon2;Parent=MS.gene026674.t1
chr1.2 CDS 15347185 15347253 15347185 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
chr1.2 exon 15347358 15347423 15347358 ID=MS.gene026674.t1.exon3;Parent=MS.gene026674.t1
chr1.2 CDS 15347358 15347423 15347358 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
chr1.2 exon 15348687 15348808 15348687 ID=MS.gene026674.t1.exon4;Parent=MS.gene026674.t1
chr1.2 CDS 15348687 15348808 15348687 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
chr1.2 exon 15348927 15349055 15348927 ID=MS.gene026674.t1.exon5;Parent=MS.gene026674.t1
chr1.2 CDS 15348927 15349055 15348927 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
chr1.2 exon 15349149 15349262 15349149 ID=MS.gene026674.t1.exon6;Parent=MS.gene026674.t1
chr1.2 CDS 15349149 15349262 15349149 ID=cds.MS.gene026674.t1;Parent=MS.gene026674.t1
Gene Sequence

>MS.gene026674

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAATTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGCAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACCATTGGTTTGTTCACAAAACCCTTATTTCAATGTTTTTCCCCCCTTTTATTCATGCATTTTGGATGAGATCTCTGTGTTTTTTCAATGTAGCGGTGCTCTAGAATTATTCGTTTGAGGTGTTAACACGTACTATTAACATTGATTTTGGTCCTACGGTGACGAAAATTGAATTTGACTTAATTTTTTTTTTAATTGATTTTGATTAAGAGTGACATAAAGTGATTTAGGTTTGAATATATTCACGAAAAAAATGATTTTTGTCAATTTATGTTTGGATAGTTTTGATCAGAATTACTTTTGTGTGTTATATATGTCTGCCACTTTGAGTGCATGTTTGAATTCTGAAGCCGTAAGTTTGATTTTGGTATGGTCGGACTCGGAACTGATTTGGTCTCTAGAATTGATTCTGACATAAAGCTAGCTTTTGTATTTGTCCCTAAATTTGATTTTGACTCTGAAATTTATTGCTCAACTTATTTTAACGATAATGTATCCAAACATTAATCACATTTGAGGCTAGACTTGGAACCAAATGTGGGTGAATCGTCTGTTTGGATCTGTGTTTGGTGTTCACCTAACGTGAGTTTGCGGAACGACCGTGATTTCAAGAAGCTAATAAAGGAAGCTTCTGTAGTAATGCGGTTTGTTGCCATGATTTCAAGAAGAATATGGATCGCCAACACATATCCAAACAGATGTGAAGACTTTTTGTACTTTTTCACGGAAAGACCCTTGAGATGGGAACTTTCGAGGGTTCACTAGGAGGTTTGGTTTGGTTTGGGGTATTCGTATATGATCAAACTAGTAATGACTACTTGCAAGATATTGCATGAATGTAGGGGGAAAGTGACAGGAAAAGTGATGTGAAATTCTATCAAATGGCATTAGTGGAACACTTTTCTTAGTATTGCCTTGTTGTCTCACATGTCCTTTTTTAGCTTGTTTACTATTTCATTAGCTTTCATTGAGTTCAAATTCTGTCATTTAGTCAACAAAAGAGCTTCTCTCTCATAGTGGGTGTTGGGAGAAATTTAAGGAATCAGAATCGTGGTTGAATCATTATCCATCTTACACTCAATTCTTAAACCTATAATGTTAATATAGACGTAAACAAATTTATATTGCATTGGGGAAGGTCTTGATAAAACCTTTCATTTAAGAAGCCATATGAATGTTACGGTTTGTGTGTGGTCCATGATGCTGTTTTATCATCCCTACCACTCAATTATAGGTTAAAGTATAACTCTACTCATTTATTTGCATCGACTCTTATGAACATAATGCAGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAGAAGTTAAAACTTGCTATATGGGACACGGGTAATGTAACATGCTGATTCAGTTTATTTTGGAAAGTTGAAATTCTGTTATTTTCTTGGGAGTCATAAGTTAGTTGCATGATTTTGTATTTTCTTCTCGTGCAGCTGGACAGGAAAGGTTTCGAACACTTACTGGTTCATATTATAGAGGTGCACAAGGAATAATTATGGGTATGCTCATTGCTCCTTGATATTCTCCATTTCGTAGCTACCTTTCCTGCTTGCTATACCATGAATATGATGTACAATTTTTTCCTAATTTGTTTGAATGCTTTTATCTTTTTGAACTGTAAATCATGCAACATGGCTACGTGTTAAATACTAATTTCTATTTTATCCCTTGTGTGTTTTTATGGTAAAAAAAAGTAAAAATAGATTCCTGTTATTATACTTTCATAGTTACCATGTATAGCCTAAGCTAATCGATTTTATTTCGAAATTCAGGTATTTATACTATTTCCTCTTGTACATTTCCTTCTAAAATAATAATGATATGTTCATTTTCAAGCTGGTTGATCGCGATTCTTTTTCGAGATTGAAGTGGCTCAGTCAATGAGTGTATTACTTTTTTCAAAAGGAATTATGCCGTCAATATTTTGGATGAAACATGGATACTTGATTGTATACATGTTGATCCTCCTATGCAAATACAGAAGATTTGTTACTAAGTTTCTCATTTTGGCATTTGATAATCATTGGAGTGTAGTTGTTCGAACCCTATAATACCAATGTTATTGATGGCGGAAAGCCAAAAATCCGACACATCCGACGGATGGTGCTGTGGTGCCGCCATCCTTCACAAATTTGTCATTGCGGTTTTCGGAAAATCCGCCACCGATATCCGCTATGCCGCCATGGCCGATATTTGACAACACTGTATAATACATTATATGATGACACAATAAAGTATTTCTTTTTATAAGATAGGGTCGTACTAAAGTCATTGCATATATGGATATAAAGATTGGGTTAGAGATGCTTGTAACGTTGTACTTAAAACCTCAAATCTAGGAGGCTATGATACCATGTCATGATCAAATACTTTGAAAGCTTAAACTGTCGGGTGAAGGCACAAAAGATGGTTACTGTATCTTTTGTTTGACTAATAACTAATTCTTCAGGGTCAAGGATTAATTAACGTTGTACTTAAAACCTCAAGATGTATGTACAATATGTATATGAAATATCTTCAAATGCATGAAAGCTGAATAGTGAATTCAGGGGTCAAGGATTCATTAATATTATTGTATCTTTTGCTTTTTGGTTAATATCATATATGATCTCTATGCCATAATCTATTTAAAATATTATTTCAGTGACCTGTTTTGCTTCTAAATGTAATGAGATTGTCTTTTATTCTTTAGCTGTAGTCCCATTTATCTATCAGTCAGTTTATATTATAAACTTATCAGTGAATCTGGGTTGTGAATACAGTATACGATGTAACGCGACGTGAAACATTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGTACACCATTTATGAATTTGCATTTGCAATAATTTATTCTACCAAACTTTGTGTTAAGTTTTGATTCACTTCAGTAAAAGTTTGCTTATGAATATAGTTTGCCTATCTCATATTTTAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGGTGCCTCTATACTGAATGCAGTGCAAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGGTACATGTTCACCTCTCCTCATGTCCTCAAAATCAGTATTTTCAGAAAGTGGAAGTAATGTTTCAATTTTGGGATTCCTTTTGTTGTTTCCAGATTTTGGATACACCAAGCCTCCTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCGCATGGTGA
Protein sequence

>MS.gene026674.t1

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCAW