AlfalfaGEDB | MS.gene71511

M. sativa cultivar XinJiangDaYe / MS.gene71511

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71511.t1	RHN45038.1	97.9	141	3	0	1	141	1	141	4.30E-70	273.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71511.t1	Q8RYJ8	54.7	139	60	1	5	140	6	144	1.1e-34	147.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71511.t1	A0A396GX56	97.9	141	3	0	1	141	1	141	3.1e-70	273.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049413	MS.gene71511	0.811056	8.47E-51	-1.69E-46
MS.gene054892	MS.gene71511	0.823525	1.32E-53	-1.69E-46
MS.gene054893	MS.gene71511	0.820202	7.77E-53	-1.69E-46
MS.gene055229	MS.gene71511	0.810343	1.21E-50	-1.69E-46
MS.gene05952	MS.gene71511	0.827502	1.51E-54	-1.69E-46
MS.gene06023	MS.gene71511	0.815624	8.40E-52	-1.69E-46
MS.gene061047	MS.gene71511	0.803457	3.45E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene64317	MS.gene71511	PPI
MS.gene09960	MS.gene71511	PPI
MS.gene066862	MS.gene71511	PPI
MS.gene024717	MS.gene71511	PPI
MS.gene056461	MS.gene71511	PPI
MS.gene64308	MS.gene71511	PPI
MS.gene64313	MS.gene71511	PPI
MS.gene71511	MS.gene29459	PPI
MS.gene83068	MS.gene71511	PPI
MS.gene93087	MS.gene71511	PPI
MS.gene62689	MS.gene71511	PPI
MS.gene97948	MS.gene71511	PPI
MS.gene003880	MS.gene71511	PPI
MS.gene54637	MS.gene71511	PPI
MS.gene000738	MS.gene71511	PPI
MS.gene67281	MS.gene71511	PPI
MS.gene061261	MS.gene71511	PPI
MS.gene025777	MS.gene71511	PPI
MS.gene062239	MS.gene71511	PPI
MS.gene46886	MS.gene71511	PPI
MS.gene026530	MS.gene71511	PPI
MS.gene53650	MS.gene71511	PPI
MS.gene061768	MS.gene71511	PPI
MS.gene71207	MS.gene71511	PPI
MS.gene71511	MS.gene21696	PPI
MS.gene07422	MS.gene71511	PPI
MS.gene03228	MS.gene71511	PPI
MS.gene21932	MS.gene71511	PPI
MS.gene28338	MS.gene71511	PPI
MS.gene85596	MS.gene71511	PPI
MS.gene94551	MS.gene71511	PPI
MS.gene65954	MS.gene71511	PPI
MS.gene008225	MS.gene71511	PPI
MS.gene79028	MS.gene71511	PPI
MS.gene71511	MS.gene64317	PPI
MS.gene64324	MS.gene71511	PPI
MS.gene015470	MS.gene71511	PPI
MS.gene015658	MS.gene71511	PPI
MS.gene22553	MS.gene71511	PPI
MS.gene53662	MS.gene71511	PPI
MS.gene64314	MS.gene71511	PPI
MS.gene80011	MS.gene71511	PPI
MS.gene96914	MS.gene71511	PPI
MS.gene070168	MS.gene71511	PPI
MS.gene026940	MS.gene71511	PPI
MS.gene21155	MS.gene71511	PPI
MS.gene92775	MS.gene71511	PPI
MS.gene004899	MS.gene71511	PPI
MS.gene80013	MS.gene71511	PPI
MS.gene09934	MS.gene71511	PPI
MS.gene96922	MS.gene71511	PPI
MS.gene009021	MS.gene71511	PPI
MS.gene46237	MS.gene71511	PPI
MS.gene070167	MS.gene71511	PPI
MS.gene71511	MS.gene64314	PPI
MS.gene87673	MS.gene71511	PPI
MS.gene05284	MS.gene71511	PPI
MS.gene21931	MS.gene71511	PPI
MS.gene041795	MS.gene71511	PPI
MS.gene046988	MS.gene71511	PPI
MS.gene63000	MS.gene71511	PPI
MS.gene71511	MS.gene53650	PPI
MS.gene057293	MS.gene71511	PPI
MS.gene98972	MS.gene71511	PPI
MS.gene63281	MS.gene71511	PPI
MS.gene53648	MS.gene71511	PPI
MS.gene68345	MS.gene71511	PPI
MS.gene017446	MS.gene71511	PPI
MS.gene89216	MS.gene71511	PPI
MS.gene040127	MS.gene71511	PPI
MS.gene62258	MS.gene71511	PPI
MS.gene64310	MS.gene71511	PPI
MS.gene53659	MS.gene71511	PPI
MS.gene038456	MS.gene71511	PPI
MS.gene000724	MS.gene71511	PPI
MS.gene052672	MS.gene71511	PPI
MS.gene21696	MS.gene71511	PPI
MS.gene056383	MS.gene71511	PPI
MS.gene64311	MS.gene71511	PPI
MS.gene25186	MS.gene71511	PPI
MS.gene008831	MS.gene71511	PPI
MS.gene96913	MS.gene71511	PPI
MS.gene58906	MS.gene71511	PPI
MS.gene020515	MS.gene71511	PPI
MS.gene58860	MS.gene71511	PPI
MS.gene27516	MS.gene71511	PPI
MS.gene02545	MS.gene71511	PPI
MS.gene053319	MS.gene71511	PPI
MS.gene04915	MS.gene71511	PPI
MS.gene29459	MS.gene71511	PPI
MS.gene61009	MS.gene71511	PPI
MS.gene64327	MS.gene71511	PPI
MS.gene64307	MS.gene71511	PPI
MS.gene025797	MS.gene71511	PPI
MS.gene026618	MS.gene71511	PPI
MS.gene04917	MS.gene71511	PPI
MS.gene64316	MS.gene71511	PPI
MS.gene074045	MS.gene71511	PPI
MS.gene47195	MS.gene71511	PPI
MS.gene066863	MS.gene71511	PPI
MS.gene036930	MS.gene71511	PPI
MS.gene001246	MS.gene71511	PPI
MS.gene013748	MS.gene71511	PPI
MS.gene71511	MS.gene93763	PPI
MS.gene55545	MS.gene71511	PPI
MS.gene71511	MS.gene80012	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71511.t1	MTR_6g023460	74.468	141	35	1	1	141	3	142	1.51e-73	216
MS.gene71511.t1	MTR_4g103655	60.000	135	53	1	6	140	6	139	3.41e-51	159
MS.gene71511.t1	MTR_4g103650	59.259	135	54	1	6	140	2	135	1.42e-50	158
MS.gene71511.t1	MTR_4g103630	57.778	135	56	1	6	140	6	139	2.04e-49	155
MS.gene71511.t1	MTR_3g089070	53.571	140	64	1	1	140	1	139	1.62e-47	150
MS.gene71511.t1	MTR_3g089090	53.623	138	63	1	3	140	2	138	2.71e-47	149
MS.gene71511.t1	MTR_8g078270	47.727	132	67	2	10	140	57	187	1.50e-34	119
MS.gene71511.t1	MTR_1g046950	38.732	142	75	3	6	140	4	140	8.81e-29	102
MS.gene71511.t1	MTR_5g079340	37.778	135	83	1	6	140	4	137	2.27e-28	101
MS.gene71511.t1	MTR_1g047100	38.686	137	75	3	9	140	7	139	3.95e-27	98.6
MS.gene71511.t1	MTR_3g067610	37.037	135	81	2	6	140	5	135	4.19e-27	98.6
MS.gene71511.t1	MTR_8g107110	37.956	137	84	1	4	140	22	157	7.72e-27	98.6
MS.gene71511.t1	MTR_1g032070	38.519	135	81	2	8	141	48	181	7.64e-26	97.1
MS.gene71511.t1	MTR_8g105230	38.346	133	80	2	6	137	36	167	8.36e-26	96.7
MS.gene71511.t1	MTR_7g075040	38.926	149	82	4	1	140	42	190	9.18e-25	94.0
MS.gene71511.t1	MTR_6g079570	37.226	137	86	0	4	140	24	160	5.63e-24	91.7
MS.gene71511.t1	MTR_4g067270	36.879	141	81	4	5	140	4	141	1.24e-23	90.1
MS.gene71511.t1	MTR_5g017510	35.294	136	88	0	6	141	48	183	3.07e-23	90.1
MS.gene71511.t1	MTR_5g017560	35.294	136	88	0	6	141	48	183	3.07e-23	90.1
MS.gene71511.t1	MTR_7g087610	34.752	141	89	3	2	140	8	147	4.39e-23	88.6
MS.gene71511.t1	MTR_8g036075	36.806	144	81	4	6	140	49	191	1.75e-22	88.2
MS.gene71511.t1	MTR_5g017550	35.294	136	87	1	6	141	48	182	2.73e-22	87.4
MS.gene71511.t1	MTR_1g076650	32.624	141	93	2	2	141	8	147	3.35e-22	86.3
MS.gene71511.t1	MTR_1g076650	46.269	67	36	0	74	140	7	73	1.31e-12	61.6
MS.gene71511.t1	MTR_8g066630	33.813	139	87	2	2	136	13	150	6.88e-22	85.9
MS.gene71511.t1	MTR_6g025320	34.043	141	90	3	2	140	8	147	8.43e-22	85.1
MS.gene71511.t1	MTR_6g025320	40.299	67	40	0	74	140	7	73	4.67e-11	57.4
MS.gene71511.t1	MTR_1g041285	34.043	141	91	2	2	141	8	147	1.56e-21	84.7
MS.gene71511.t1	MTR_5g088320	33.333	141	91	3	2	140	8	147	4.02e-21	83.6
MS.gene71511.t1	MTR_5g088320	41.791	67	39	0	74	140	7	73	1.24e-11	58.9
MS.gene71511.t1	MTR_4g086260	36.090	133	79	3	10	140	61	189	3.45e-20	82.4
MS.gene71511.t1	MTR_1g071150	31.915	141	94	2	2	141	8	147	5.31e-20	80.5
MS.gene71511.t1	MTR_3g083470	31.159	138	83	2	5	141	92	218	5.43e-20	82.4
MS.gene71511.t1	MTR_4g115170	37.580	157	72	5	6	140	64	216	8.01e-19	79.3
MS.gene71511.t1	MTR_7g089760	35.556	135	83	3	9	140	8	141	7.55e-18	75.1
MS.gene71511.t1	MTR_5g008705	34.091	132	77	3	14	140	2	128	1.53e-17	73.9
MS.gene71511.t1	MTR_4g112460	31.469	143	94	3	1	140	6	147	2.81e-17	73.9
MS.gene71511.t1	MTR_7g074240	34.483	145	81	3	9	140	27	170	3.89e-17	73.9
MS.gene71511.t1	MTR_8g069915	30.282	142	95	3	2	140	8	148	1.42e-16	72.4
MS.gene71511.t1	MTR_7g090450	28.276	145	99	2	1	140	68	212	2.43e-14	67.4
MS.gene71511.t1	MTR_5g089320	30.496	141	92	3	2	140	369	505	2.67e-14	68.9
MS.gene71511.t1	MTR_1g030440	33.108	148	81	3	5	141	21	161	2.88e-14	66.2
MS.gene71511.t1	MTR_5g027000	28.369	141	99	2	1	140	17	156	3.21e-14	65.9
MS.gene71511.t1	MTR_0168s0120	35.870	92	57	2	51	140	20	111	1.06e-13	63.5
MS.gene71511.t1	MTR_6g025320	35.870	92	57	2	51	140	20	111	1.06e-13	63.5
MS.gene71511.t1	MTR_0028s0170	30.496	141	92	3	2	140	379	515	1.62e-13	66.6
MS.gene71511.t1	MTR_6g007613	29.496	139	96	2	3	140	26	163	1.89e-13	64.3
MS.gene71511.t1	MTR_3g088655	32.237	152	79	5	8	141	10	155	2.64e-13	63.5
MS.gene71511.t1	MTR_2g098890	30.556	144	88	4	5	140	63	202	3.80e-13	63.9
MS.gene71511.t1	MTR_5g079470	40.580	69	39	1	4	72	8	74	4.39e-13	61.2
MS.gene71511.t1	MTR_5g009830	29.078	141	94	3	2	140	367	503	5.38e-13	65.1
MS.gene71511.t1	MTR_5g008695	32.381	105	68	1	38	139	8	112	9.72e-13	60.8
MS.gene71511.t1	MTR_7g074020	29.496	139	96	2	3	140	27	164	1.33e-12	62.0
MS.gene71511.t1	MTR_7g068710	33.333	132	85	2	10	140	365	494	2.30e-12	63.5
MS.gene71511.t1	MTR_8g099095	30.075	133	87	3	10	140	375	503	8.03e-12	61.6
MS.gene71511.t1	MTR_1g026190	27.660	141	96	3	2	140	383	519	1.09e-11	61.2
MS.gene71511.t1	MTR_5g092810	29.787	141	93	3	2	140	393	529	1.79e-11	60.8
MS.gene71511.t1	MTR_4g132040	29.078	141	94	3	2	140	396	532	2.07e-11	60.5
MS.gene71511.t1	MTR_4g132070	30.075	133	87	3	10	140	400	528	2.87e-11	60.1
MS.gene71511.t1	MTR_7g115040	31.915	141	94	2	2	141	8	147	5.41e-11	57.4
MS.gene71511.t1	MTR_5g011850	27.778	144	94	3	2	141	8	145	9.49e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71511.t1	AT1G76650	51.079	139	67	1	2	140	39	176	5.28e-41	135
MS.gene71511.t1	AT1G76650	51.079	139	67	1	2	140	39	176	5.28e-41	135
MS.gene71511.t1	AT1G76650	48.921	139	60	2	2	140	39	166	1.95e-37	125
MS.gene71511.t1	AT1G76640	47.794	136	67	2	8	140	24	158	4.05e-36	122
MS.gene71511.t1	AT3G01830	47.887	142	70	2	1	140	6	145	9.39e-35	118
MS.gene71511.t1	AT5G42380	45.714	140	73	2	3	140	46	184	1.59e-33	116
MS.gene71511.t1	AT3G50770	44.203	138	70	3	9	140	67	203	3.23e-32	113
MS.gene71511.t1	AT1G24620	43.885	139	76	2	3	140	34	171	4.95e-32	112
MS.gene71511.t1	AT5G37770	42.029	138	74	2	8	140	19	155	1.55e-29	105
MS.gene71511.t1	AT5G37770	42.029	138	74	2	8	140	19	155	1.55e-29	105
MS.gene71511.t1	AT1G66400	40.146	137	78	2	8	141	17	152	3.43e-27	99.4
MS.gene71511.t1	AT1G18210	36.429	140	85	2	1	140	18	153	3.64e-23	89.4
MS.gene71511.t1	AT1G18210	36.429	140	85	2	1	140	18	153	3.64e-23	89.4
MS.gene71511.t1	AT5G17470	37.778	135	78	3	10	140	6	138	9.36e-23	87.8
MS.gene71511.t1	AT5G21274	34.752	141	89	3	2	140	8	147	4.62e-22	85.9
MS.gene71511.t1	AT5G21274	40.299	67	40	0	74	140	7	73	5.00e-11	57.4
MS.gene71511.t1	AT3G56800	34.043	141	90	3	2	140	8	147	7.76e-22	85.5
MS.gene71511.t1	AT3G56800	40.299	67	40	0	74	140	7	73	4.79e-11	57.4
MS.gene71511.t1	AT2G27030	34.043	141	90	3	2	140	8	147	7.76e-22	85.5
MS.gene71511.t1	AT2G27030	40.299	67	40	0	74	140	7	73	4.79e-11	57.4
MS.gene71511.t1	AT2G41110	34.043	141	90	3	2	140	8	147	7.76e-22	85.5
MS.gene71511.t1	AT2G41110	40.299	67	40	0	74	140	7	73	4.79e-11	57.4
MS.gene71511.t1	AT1G73630	33.333	135	86	2	6	140	20	150	8.00e-22	85.9
MS.gene71511.t1	AT3G43810	34.043	141	90	3	2	140	8	147	8.83e-22	85.1
MS.gene71511.t1	AT3G43810	40.299	67	40	0	74	140	7	73	4.89e-11	57.4
MS.gene71511.t1	AT2G43290	35.374	147	80	4	5	140	64	206	1.08e-21	86.7
MS.gene71511.t1	AT5G37780	32.624	141	92	3	2	140	8	147	1.88e-21	84.3
MS.gene71511.t1	AT5G37780	41.791	67	39	0	74	140	7	73	1.22e-11	58.9
MS.gene71511.t1	AT1G66410	32.624	141	92	3	2	140	8	147	1.88e-21	84.3
MS.gene71511.t1	AT1G66410	41.791	67	39	0	74	140	7	73	1.22e-11	58.9
MS.gene71511.t1	AT3G22930	31.915	141	94	2	2	141	31	170	1.99e-21	85.1
MS.gene71511.t1	AT4G14640	31.915	141	94	2	2	141	9	148	2.34e-21	84.3
MS.gene71511.t1	AT2G27030	34.043	141	90	3	2	140	8	147	2.90e-21	84.7
MS.gene71511.t1	AT1G05990	37.063	143	79	4	5	140	4	142	3.34e-21	84.0
MS.gene71511.t1	AT3G43810	34.043	141	90	3	2	140	8	147	4.46e-21	85.1
MS.gene71511.t1	AT2G36180	35.252	139	79	3	9	140	3	137	5.61e-21	83.2
MS.gene71511.t1	AT2G15680	34.532	139	85	3	4	140	48	182	6.64e-21	84.0
MS.gene71511.t1	AT4G12860	35.971	139	83	4	6	140	5	141	6.83e-21	83.2
MS.gene71511.t1	AT2G41100	31.847	157	88	2	2	140	62	217	1.38e-20	85.1
MS.gene71511.t1	AT2G41100	29.134	127	72	2	31	140	2	127	8.02e-11	58.5
MS.gene71511.t1	AT2G41100	31.847	157	88	2	2	140	62	217	1.38e-20	85.1
MS.gene71511.t1	AT2G41100	29.134	127	72	2	31	140	2	127	8.02e-11	58.5
MS.gene71511.t1	AT2G41100	31.847	157	88	2	2	140	62	217	1.38e-20	85.1
MS.gene71511.t1	AT2G41100	29.134	127	72	2	31	140	2	127	8.02e-11	58.5
MS.gene71511.t1	AT2G41100	32.051	156	88	2	2	140	8	162	1.98e-20	85.5
MS.gene71511.t1	AT2G41100	31.847	157	88	2	2	140	97	252	2.11e-20	85.1
MS.gene71511.t1	AT2G41100	32.051	156	88	2	2	140	8	162	1.98e-20	85.5
MS.gene71511.t1	AT2G41100	31.847	157	88	2	2	140	97	252	2.11e-20	85.1
MS.gene71511.t1	AT3G59440	33.333	135	87	2	8	140	53	186	9.85e-20	81.3
MS.gene71511.t1	AT2G41110	31.373	153	90	4	2	140	8	159	1.79e-19	79.7
MS.gene71511.t1	AT4G03290	34.266	143	85	4	5	140	4	144	3.15e-19	79.0
MS.gene71511.t1	AT3G01830	46.364	110	55	2	1	108	6	113	3.74e-19	78.2
MS.gene71511.t1	AT3G07490	35.252	139	86	3	5	140	4	141	2.96e-18	76.3
MS.gene71511.t1	AT3G10190	32.331	133	89	1	9	140	73	205	8.22e-18	76.6
MS.gene71511.t1	AT3G50360	33.094	139	91	2	3	140	24	161	8.64e-18	75.5
MS.gene71511.t1	AT1G18530	33.099	142	91	3	2	140	3	143	1.56e-17	74.7
MS.gene71511.t1	AT5G37780	29.487	156	92	4	2	140	8	162	2.82e-17	73.9
MS.gene71511.t1	AT1G32250	30.986	142	90	3	2	136	12	152	2.35e-16	71.6
MS.gene71511.t1	AT3G03400	33.077	130	77	3	10	133	9	134	3.65e-16	70.5
MS.gene71511.t1	AT3G25600	30.986	142	94	3	2	140	8	148	1.05e-15	69.7
MS.gene71511.t1	AT5G37780	27.545	167	92	4	2	140	8	173	1.28e-15	70.1
MS.gene71511.t1	AT4G14640	30.894	123	83	2	20	141	9	130	1.81e-15	68.6
MS.gene71511.t1	AT4G37010	30.303	132	90	2	10	140	31	161	3.23e-15	68.9
MS.gene71511.t1	AT4G37010	30.303	132	90	2	10	140	35	165	3.57e-15	68.6
MS.gene71511.t1	AT5G37780	31.707	123	81	3	20	140	13	134	4.27e-15	67.8
MS.gene71511.t1	AT1G66410	31.707	123	81	3	20	140	36	157	5.72e-15	67.8
MS.gene71511.t1	AT3G51920	29.787	141	97	2	2	141	8	147	6.81e-15	67.4
MS.gene71511.t1	AT2G41090	29.496	139	95	2	3	141	9	144	8.57e-15	68.2
MS.gene71511.t1	AT4G20780	32.692	156	83	4	6	140	29	183	2.09e-14	67.0
MS.gene71511.t1	AT1G66410	34.783	92	58	2	51	140	20	111	5.41e-14	64.3
MS.gene71511.t1	AT1G66410	34.783	92	58	2	51	140	20	111	5.41e-14	64.3
MS.gene71511.t1	AT2G41410	29.371	143	98	2	2	141	66	208	6.54e-14	66.2
MS.gene71511.t1	AT3G43810	35.870	92	57	2	51	140	20	111	1.11e-13	63.5
MS.gene71511.t1	AT3G43810	35.870	92	57	2	51	140	20	111	1.11e-13	63.5
MS.gene71511.t1	AT1G76040	32.624	141	89	3	2	140	174	310	2.64e-13	65.9
MS.gene71511.t1	AT1G76040	32.624	141	89	3	2	140	174	310	2.64e-13	65.9
MS.gene71511.t1	AT1G76040	32.624	141	89	3	2	140	412	548	3.63e-13	65.9
MS.gene71511.t1	AT3G03000	29.927	137	93	2	2	136	16	151	3.86e-13	63.2
MS.gene71511.t1	AT5G17480	42.188	64	35	1	5	68	8	69	5.99e-13	60.8
MS.gene71511.t1	AT1G74740	34.074	135	80	4	10	140	368	497	1.15e-12	64.3
MS.gene71511.t1	AT3G03410	31.343	134	83	2	8	141	4	128	1.48e-12	60.8
MS.gene71511.t1	AT5G12180	33.083	133	83	3	10	140	382	510	1.86e-12	63.5
MS.gene71511.t1	AT5G44460	31.081	148	88	3	6	140	28	174	1.91e-12	61.6
MS.gene71511.t1	AT3G03430	38.235	68	40	1	5	72	8	73	2.11e-12	59.3
MS.gene71511.t1	AT4G23650	30.827	133	86	3	10	140	387	515	2.78e-12	63.2
MS.gene71511.t1	AT5G19360	32.331	133	84	3	10	140	377	505	3.12e-12	63.2
MS.gene71511.t1	AT2G31500	33.099	142	91	3	2	140	367	507	1.16e-11	61.2
MS.gene71511.t1	AT1G12310	27.778	144	94	3	2	141	9	146	1.49e-11	58.5
MS.gene71511.t1	AT1G35670	30.000	140	93	3	2	140	327	462	3.59e-11	60.1
MS.gene71511.t1	AT4G09570	30.000	140	93	3	2	140	326	461	3.85e-11	60.1
MS.gene71511.t1	AT1G50700	29.078	141	94	3	2	140	374	510	7.18e-11	59.3

Find 29 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGGCGGCCGTGGCAGTTT+TGG	0.304025	7.2:+68198250	MS.gene71511:CDS
ATCTCTAAGTTTGATCTTGA+TGG	0.328179	7.2:+68198476	MS.gene71511:CDS
GTTTGAACACGCGTTCATAT+TGG	0.342028	7.2:-68198133	None:intergenic
CTCGGATGGTGATGGATTGT+TGG	0.347700	7.2:+68198274	MS.gene71511:CDS
GATCGGTGATGAGAAGTTAT+TGG	0.352593	7.2:+68198217	MS.gene71511:CDS
TCGGATGGTGATGGATTGTT+GGG	0.358423	7.2:+68198275	MS.gene71511:CDS
AAAAGAATGCTTAGCAGGTT+AGG	0.379280	7.2:+68198419	MS.gene71511:CDS
ACACATTGCCGCAGCTCAGC+CGG	0.459388	7.2:-68198188	None:intergenic
AAGTTTGATCTTGATGGGGA+TGG	0.469441	7.2:+68198482	MS.gene71511:CDS
TCTCTAAGTTTGATCTTGAT+GGG	0.474554	7.2:+68198477	MS.gene71511:CDS
GTCTTAAAAGAATGCTTAGC+AGG	0.480249	7.2:+68198414	MS.gene71511:CDS
AAAAGTGAATGACTTAAAAG+AGG	0.525085	7.2:+68198343	MS.gene71511:CDS
GGAGGATGTAGAGGCGGCCG+TGG	0.525140	7.2:+68198241	MS.gene71511:CDS
TTTAAGTTGTATGAGATGGA+TGG	0.526008	7.2:+68198368	MS.gene71511:CDS
AGTTTGATCTTGATGGGGAT+GGG	0.530544	7.2:+68198483	MS.gene71511:CDS
GTTTGTGGAGGGCGCAAAAG+AGG	0.548643	7.2:+68198316	MS.gene71511:CDS
TGATGAGAAGTTATTGGCGG+AGG	0.569073	7.2:+68198223	MS.gene71511:CDS
CGGATGGTGATGGATTGTTG+GGG	0.572530	7.2:+68198276	MS.gene71511:CDS
AGATATCGCCGGCTGAGCTG+CGG	0.579285	7.2:+68198180	MS.gene71511:CDS
CTCTAAGTTTGATCTTGATG+GGG	0.585858	7.2:+68198478	MS.gene71511:CDS
GTTATTGGCGGAGGATGTAG+AGG	0.593394	7.2:+68198232	MS.gene71511:CDS
CGGCAATGTGTTGAGGCGAT+CGG	0.601386	7.2:+68198200	MS.gene71511:CDS
TTGTATGAGATGGATGGAAG+TGG	0.607357	7.2:+68198374	MS.gene71511:CDS
TGGAGATGGTAAGATATCGC+CGG	0.613279	7.2:+68198169	MS.gene71511:CDS
TGAGCTGCGGCAATGTGTTG+AGG	0.617888	7.2:+68198193	MS.gene71511:CDS
CGGTGATGAGAAGTTATTGG+CGG	0.631551	7.2:+68198220	MS.gene71511:CDS
ATCCGAGTCCAAAACTGCCA+CGG	0.639737	7.2:-68198258	None:intergenic
GAAGTGGTTGCATAACACCT+AGG	0.679992	7.2:+68198390	MS.gene71511:CDS
ATTGGCGGAGGATGTAGAGG+CGG	0.697526	7.2:+68198235	MS.gene71511:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATCAGTTTTGATGAATTTA+AGG	+	chr7.2:68198508-68198527	MS.gene71511:CDS	20.0%
!	AAAAGTGAATGACTTAAAAG+AGG	+	chr7.2:68198343-68198362	MS.gene71511:CDS	25.0%
!!	TGATGATTTTGTAAAGTTTG+TGG	+	chr7.2:68198301-68198320	MS.gene71511:CDS	25.0%
!!!	TTCAAACGTTTTGATGAAAA+TGG	+	chr7.2:68198149-68198168	MS.gene71511:CDS	25.0%
	ATCTCTAAGTTTGATCTTGA+TGG	+	chr7.2:68198476-68198495	MS.gene71511:CDS	30.0%
	TCTCTAAGTTTGATCTTGAT+GGG	+	chr7.2:68198477-68198496	MS.gene71511:CDS	30.0%
!	GATTTTGTAAAGTTTGTGGA+GGG	+	chr7.2:68198305-68198324	MS.gene71511:CDS	30.0%
!	TGATTTTGTAAAGTTTGTGG+AGG	+	chr7.2:68198304-68198323	MS.gene71511:CDS	30.0%
!!	TTTAAGTTGTATGAGATGGA+TGG	+	chr7.2:68198368-68198387	MS.gene71511:CDS	30.0%
	AAAAGAATGCTTAGCAGGTT+AGG	+	chr7.2:68198419-68198438	MS.gene71511:CDS	35.0%
	CTCTAAGTTTGATCTTGATG+GGG	+	chr7.2:68198478-68198497	MS.gene71511:CDS	35.0%
	GTCTTAAAAGAATGCTTAGC+AGG	+	chr7.2:68198414-68198433	MS.gene71511:CDS	35.0%
!!	CGTTTTGATGAAAATGGAGA+TGG	+	chr7.2:68198155-68198174	MS.gene71511:CDS	35.0%
!!!	AGCATTCTTTTAAGACTCCT+AGG	-	chr7.2:68198410-68198429	None:intergenic	35.0%
!!!	GGCTTTTAAGTTGTATGAGA+TGG	+	chr7.2:68198364-68198383	MS.gene71511:CDS	35.0%
	AAGTTTGATCTTGATGGGGA+TGG	+	chr7.2:68198482-68198501	MS.gene71511:CDS	40.0%
	AGTTTGATCTTGATGGGGAT+GGG	+	chr7.2:68198483-68198502	MS.gene71511:CDS	40.0%
	GATCGGTGATGAGAAGTTAT+TGG	+	chr7.2:68198217-68198236	MS.gene71511:CDS	40.0%
	GTTTGAACACGCGTTCATAT+TGG	-	chr7.2:68198136-68198155	None:intergenic	40.0%
	TTGTATGAGATGGATGGAAG+TGG	+	chr7.2:68198374-68198393	MS.gene71511:CDS	40.0%
	CGGTGATGAGAAGTTATTGG+CGG	+	chr7.2:68198220-68198239	MS.gene71511:CDS	45.0%
	GAAGTGGTTGCATAACACCT+AGG	+	chr7.2:68198390-68198409	MS.gene71511:CDS	45.0%
	TGATGAGAAGTTATTGGCGG+AGG	+	chr7.2:68198223-68198242	MS.gene71511:CDS	45.0%
	TGGAGATGGTAAGATATCGC+CGG	+	chr7.2:68198169-68198188	MS.gene71511:CDS	45.0%
!!	TCGGATGGTGATGGATTGTT+GGG	+	chr7.2:68198275-68198294	MS.gene71511:CDS	45.0%
	ATCCGAGTCCAAAACTGCCA+CGG	-	chr7.2:68198261-68198280	None:intergenic	50.0%
	GTTATTGGCGGAGGATGTAG+AGG	+	chr7.2:68198232-68198251	MS.gene71511:CDS	50.0%
!!	CGGATGGTGATGGATTGTTG+GGG	+	chr7.2:68198276-68198295	MS.gene71511:CDS	50.0%
!!	CTCGGATGGTGATGGATTGT+TGG	+	chr7.2:68198274-68198293	MS.gene71511:CDS	50.0%
!!	GTTTTGGACTCGGATGGTGA+TGG	+	chr7.2:68198266-68198285	MS.gene71511:CDS	50.0%
	ATTGGCGGAGGATGTAGAGG+CGG	+	chr7.2:68198235-68198254	MS.gene71511:CDS	55.0%
	CGGCAATGTGTTGAGGCGAT+CGG	+	chr7.2:68198200-68198219	MS.gene71511:CDS	55.0%
	TGAGCTGCGGCAATGTGTTG+AGG	+	chr7.2:68198193-68198212	MS.gene71511:CDS	55.0%
!	GTTTGTGGAGGGCGCAAAAG+AGG	+	chr7.2:68198316-68198335	MS.gene71511:CDS	55.0%
!!!	GTGGCAGTTTTGGACTCGGA+TGG	+	chr7.2:68198260-68198279	MS.gene71511:CDS	55.0%
	ACACATTGCCGCAGCTCAGC+CGG	-	chr7.2:68198191-68198210	None:intergenic	60.0%
!	AGATATCGCCGGCTGAGCTG+CGG	+	chr7.2:68198180-68198199	MS.gene71511:CDS	60.0%
!!!	GGCCGTGGCAGTTTTGGACT+CGG	+	chr7.2:68198256-68198275	MS.gene71511:CDS	60.0%
!	AGAGGCGGCCGTGGCAGTTT+TGG	+	chr7.2:68198250-68198269	MS.gene71511:CDS	65.0%
	GGAGGATGTAGAGGCGGCCG+TGG	+	chr7.2:68198241-68198260	MS.gene71511:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	68198119	68198544	68198119	ID=MS.gene71511
chr7.2	mRNA	68198119	68198544	68198119	ID=MS.gene71511.t1;Parent=MS.gene71511
chr7.2	exon	68198119	68198544	68198119	ID=MS.gene71511.t1.exon1;Parent=MS.gene71511.t1
chr7.2	CDS	68198119	68198544	68198119	ID=cds.MS.gene71511.t1;Parent=MS.gene71511.t1

Gene Sequence

>MS.gene71511

ATGGACAAGATAAGCCAATATGAACGCGTGTTCAAACGTTTTGATGAAAATGGAGATGGTAAGATATCGCCGGCTGAGCTGCGGCAATGTGTTGAGGCGATCGGTGATGAGAAGTTATTGGCGGAGGATGTAGAGGCGGCCGTGGCAGTTTTGGACTCGGATGGTGATGGATTGTTGGGGTTTGATGATTTTGTAAAGTTTGTGGAGGGCGCAAAAGAGGAAGAAAAAGTGAATGACTTAAAAGAGGCTTTTAAGTTGTATGAGATGGATGGAAGTGGTTGCATAACACCTAGGAGTCTTAAAAGAATGCTTAGCAGGTTAGGTGATTCTAGAAGTATAGATGAGTGTCAACTTATGATCTCTAAGTTTGATCTTGATGGGGATGGGAAAATCAGTTTTGATGAATTTAAGGTCATGATGTTGTAA

Protein sequence

>MS.gene71511.t1

MDKISQYERVFKRFDENGDGKISPAELRQCVEAIGDEKLLAEDVEAAVAVLDSDGDGLLGFDDFVKFVEGAKEEEKVNDLKEAFKLYEMDGSGCITPRSLKRMLSRLGDSRSIDECQLMISKFDLDGDGKISFDEFKVMML