AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067979


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067979.t1 MTR_8g071900 96.888 482 15 0 2 483 1 482 0.0 980
MS.gene067979.t1 MTR_5g026360 75.153 491 108 5 2 483 1 486 0.0 749
MS.gene067979.t1 MTR_8g068840 46.327 490 229 13 15 482 7 484 6.77e-136 401
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067979.t1 AT4G19460 64.242 495 162 6 2 483 24 516 0.0 647
MS.gene067979.t1 AT1G73160 49.660 441 204 8 50 483 52 481 6.91e-154 447
MS.gene067979.t1 AT5G59070 47.379 477 199 12 43 480 38 501 2.31e-137 405

Find 111 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGGATTTGTTGTTTA+AGG 0.138348 8.3:+31009643 None:intergenic
CGGATTCACCTTCATGAAAA+TGG 0.183373 8.3:+31009228 None:intergenic
TGAAGAGAACAATGAATAAA+AGG 0.207439 8.3:+31009585 None:intergenic
ATTCCTTGGAATTCCAATTT+TGG 0.210495 8.3:+31008776 None:intergenic
AGGAAATTTAGAACCAAAAT+TGG 0.211055 8.3:-31008789 MS.gene067979:CDS
GCACTCTTCTTGTAGGAATT+TGG 0.215738 8.3:+31008868 None:intergenic
TGAAGGGGAGTTTGGTTTCT+TGG 0.222371 8.3:+31009628 None:intergenic
GGAAACCAAGTTCTTGTTCT+AGG 0.232719 8.3:-31008600 MS.gene067979:CDS
CCTTCATGAAAATGGATAAA+AGG 0.253935 8.3:+31009236 None:intergenic
TATTTGATAGTTGCTGGTTC+TGG 0.291225 8.3:-31008651 MS.gene067979:CDS
AAGATCACCTGACCAAGTTT+TGG 0.306569 8.3:+31009490 None:intergenic
TTCTCTAGAAAATGGCCTAT+TGG 0.310215 8.3:-31009389 MS.gene067979:CDS
TCAAGGTTTCCAAGCATTAA+AGG 0.315496 8.3:-31008447 MS.gene067979:CDS
GGAAACAGGTACAAGGATTT+AGG 0.322504 8.3:-31008621 MS.gene067979:CDS
GATGAGTGGGAAGCCTCTTT+TGG 0.327010 8.3:-31008472 MS.gene067979:CDS
GCAACTATCAAATAAACATT+TGG 0.327090 8.3:+31008660 None:intergenic
TAAAGCATTGGAACAATATC+AGG 0.329940 8.3:-31009189 MS.gene067979:CDS
TTTCAAATCTTGTAGTATCT+TGG 0.333393 8.3:-31009091 MS.gene067979:CDS
AATGTTTATTTGATAGTTGC+TGG 0.333546 8.3:-31008657 MS.gene067979:CDS
TTGTTGAAACCAGGTGAAAT+AGG 0.336844 8.3:+31009002 None:intergenic
AGGGCTTGATCTTACTTTGA+TGG 0.338305 8.3:-31008502 MS.gene067979:CDS
CTGCTTCAAGTGCCTCCAAT+AGG 0.361091 8.3:+31008370 None:intergenic
AAGCATTAAAGGTACTCTTT+TGG 0.369662 8.3:-31008436 MS.gene067979:CDS
CTTCCCAACAATCCAAAACT+TGG 0.375866 8.3:-31009502 MS.gene067979:CDS
AGAGTGCATGTGATTGTTAA+TGG 0.375953 8.3:-31008852 MS.gene067979:CDS
AGTTTAGTACTTGGTGTAGC+AGG 0.387644 8.3:-31008750 MS.gene067979:CDS
GGTGTTGATGATGATGAGTT+TGG 0.387915 8.3:-31008831 MS.gene067979:CDS
GTTTGGAGAAGATGCTGAAT+TGG 0.391518 8.3:-31008814 MS.gene067979:CDS
TCCTAATGTAGAGTCCCTAT+TGG 0.412693 8.3:-31008385 MS.gene067979:CDS
GCATGGCGTTCCATGCCACC+TGG 0.416172 8.3:+31009359 None:intergenic
TGCTTCATGAAGCATATTCA+AGG 0.416760 8.3:-31008698 MS.gene067979:CDS
CCAGGTGAAATAGGTTCATC+AGG 0.418764 8.3:+31009011 None:intergenic
GTTCTGGACCATGGGGAAAC+AGG 0.421798 8.3:-31008635 MS.gene067979:CDS
TTTATTGTATCTCCACTTGT+CGG 0.431325 8.3:+31009208 None:intergenic
AAAAGAGTACCTTTAATGCT+TGG 0.433398 8.3:+31008438 None:intergenic
AGTACTAAACTTGCATTCCT+TGG 0.434042 8.3:+31008762 None:intergenic
CTTATCTCATTCAAAACCTT+AGG 0.435386 8.3:+31008960 None:intergenic
TCTGAATGAATAACATCAAA+TGG 0.436235 8.3:+31009149 None:intergenic
CAACTATCAAATAAACATTT+GGG 0.437055 8.3:+31008661 None:intergenic
CTTACAAGGTGTTATTCCTA+AGG 0.438410 8.3:-31008976 MS.gene067979:CDS
CCACCTGGGGTGGTACCAAT+AGG 0.438791 8.3:+31009374 None:intergenic
ATCACATGCACTCTTCTTGT+AGG 0.440984 8.3:+31008861 None:intergenic
GGAAACCTTGATGCCAAAAG+AGG 0.456922 8.3:+31008459 None:intergenic
TGCTTCAAGTGCCTCCAATA+GGG 0.458044 8.3:+31008371 None:intergenic
TCCAATAGGGACTCTACATT+AGG 0.459828 8.3:+31008384 None:intergenic
TTTGGAGAAGATGCTGAATT+GGG 0.460751 8.3:-31008813 MS.gene067979:CDS
CAACAATCCAAAACTTGGTC+AGG 0.467982 8.3:-31009497 MS.gene067979:CDS
GAAGAGAACAATGAATAAAA+GGG 0.477676 8.3:+31009586 None:intergenic
AGGAATGCAAGTTTAGTACT+TGG 0.477726 8.3:-31008759 MS.gene067979:CDS
TTACTTTAGCTGAATTTGCA+TGG 0.499438 8.3:-31009469 MS.gene067979:CDS
GAACCAAAATTGGAATTCCA+AGG 0.499871 8.3:-31008779 MS.gene067979:CDS
TTGATCCTAGAACAAGAACT+TGG 0.499984 8.3:+31008595 None:intergenic
TGGCCTATTGGTACCACCCC+AGG 0.504477 8.3:-31009377 MS.gene067979:CDS
CACTTCCTCATTATGTAGCT+AGG 0.506156 8.3:-31009118 MS.gene067979:CDS
CCTGATGAACCTATTTCACC+TGG 0.516853 8.3:-31009011 MS.gene067979:CDS
TAAAATGCTTTCAACATGGA+AGG 0.518265 8.3:+31008567 None:intergenic
AGCCCTTGAGGCCTAAGTGT+TGG 0.519619 8.3:+31008519 None:intergenic
TGCAAATAGAAGTTGTGGTG+GGG 0.527161 8.3:+31009534 None:intergenic
TTTGGATTGTTGGGAAGCAA+AGG 0.528822 8.3:+31009508 None:intergenic
TAGTTGCTGGTTCTGGACCA+TGG 0.529632 8.3:-31008644 MS.gene067979:CDS
TGGTACCACCCCAGGTGGCA+TGG 0.533887 8.3:-31009369 MS.gene067979:CDS
GCGTTCCATGCCACCTGGGG+TGG 0.535238 8.3:+31009364 None:intergenic
CCTCTCCTTGCTAGCCTCTG+TGG 0.535739 8.3:+31008333 None:intergenic
GCAAATAGAAGTTGTGGTGG+GGG 0.538698 8.3:+31009535 None:intergenic
CATGGCGTTCCATGCCACCT+GGG 0.538759 8.3:+31009360 None:intergenic
GGTTTCAACAATAGCTTACA+AGG 0.542677 8.3:-31008990 MS.gene067979:CDS
CTTGAAGCAGTGGTAAAAGA+TGG 0.544526 8.3:-31008357 MS.gene067979:CDS
ATGGACCACAGAGGCTAGCA+AGG 0.545711 8.3:-31008338 MS.gene067979:CDS
TCCTTGTACCTGTTTCCCCA+TGG 0.550684 8.3:+31008627 None:intergenic
TAATGTAGAGTCCCTATTGG+AGG 0.552827 8.3:-31008382 MS.gene067979:CDS
AATCCAACACTTAGGCCTCA+AGG 0.556259 8.3:-31008522 MS.gene067979:CDS
GTTTAGTACTTGGTGTAGCA+GGG 0.557485 8.3:-31008749 MS.gene067979:CDS
CAAGGGTAGATACAAAATGT+AGG 0.561364 8.3:+31008222 None:intergenic
AGTTGCTGGTTCTGGACCAT+GGG 0.561648 8.3:-31008643 MS.gene067979:CDS
GTGCAAATAGAAGTTGTGGT+GGG 0.562861 8.3:+31009533 None:intergenic
AGATTCCTAGCTACATAATG+AGG 0.569582 8.3:+31009113 None:intergenic
ATCCAACACTTAGGCCTCAA+GGG 0.569701 8.3:-31008521 MS.gene067979:CDS
GTGGAGATACAATAAAGCAT+TGG 0.571391 8.3:-31009201 MS.gene067979:CDS
GAGAAGATGCTGAATTGGGA+AGG 0.579306 8.3:-31008809 MS.gene067979:CDS
CACACTGCTTTAGCTCAAAG+AGG 0.588865 8.3:-31009326 MS.gene067979:CDS
ATAGTTGTGGTGATATGCTA+AGG 0.588981 8.3:-31008899 MS.gene067979:CDS
GAATATGCTTCATGAAGCAA+AGG 0.590704 8.3:+31008702 None:intergenic
TTGAGCTAAAGCAGTGTGGA+GGG 0.593536 8.3:+31009331 None:intergenic
GGGAGATTAGTTAAAGACAA+AGG 0.593695 8.3:-31008729 MS.gene067979:CDS
CAGTGTGGAGGGTGTAAGCA+TGG 0.595982 8.3:+31009342 None:intergenic
GCTTGATCTTACTTTGATGG+AGG 0.601103 8.3:-31008499 MS.gene067979:CDS
ATGGCGTTCCATGCCACCTG+GGG 0.602494 8.3:+31009361 None:intergenic
ATGAAGGTGAATCCGACAAG+TGG 0.608022 8.3:-31009220 MS.gene067979:CDS
AATCTTGTAGTATCTTGGCA+TGG 0.608621 8.3:-31009086 MS.gene067979:CDS
TGTAAGCTATTGTTGAAACC+AGG 0.610612 8.3:+31008993 None:intergenic
ATTGGAGGCACTTGAAGCAG+TGG 0.613871 8.3:-31008367 MS.gene067979:CDS
TTTGAGCTAAAGCAGTGTGG+AGG 0.615128 8.3:+31009330 None:intergenic
GGATTGTTGGGAAGCAAAGG+TGG 0.619179 8.3:+31009511 None:intergenic
ACCATGGGGAAACAGGTACA+AGG 0.622933 8.3:-31008628 MS.gene067979:CDS
TGATGGAGGCTATGATGAGT+GGG 0.626959 8.3:-31008485 MS.gene067979:CDS
CTCTTTGAGCTAAAGCAGTG+TGG 0.626998 8.3:+31009327 None:intergenic
ACATTGAGGCAGCATACTCA+CGG 0.632335 8.3:+31008301 None:intergenic
GAGGCTAGCAAGGAGAGGAA+AGG 0.634727 8.3:-31008328 MS.gene067979:CDS
AGATGGCATTAGCATATGAG+AGG 0.637476 8.3:-31008266 MS.gene067979:CDS
GGTGCAAATAGAAGTTGTGG+TGG 0.639655 8.3:+31009532 None:intergenic
CCACAGAGGCTAGCAAGGAG+AGG 0.642590 8.3:-31008333 MS.gene067979:CDS
TTGATGGAGGCTATGATGAG+TGG 0.649365 8.3:-31008486 MS.gene067979:CDS
ACTTCAATCAAAACTCAACA+AGG 0.658763 8.3:-31009263 MS.gene067979:CDS
ATTATAAAATGCTTTCAACA+TGG 0.659339 8.3:+31008563 None:intergenic
GTTGCTATTAGTGATAGTTG+TGG 0.667338 8.3:-31008912 MS.gene067979:CDS
CCTATTGGTACCACCCCAGG+TGG 0.674831 8.3:-31009374 MS.gene067979:CDS
AAAGTAAGATCAAGCCCTTG+AGG 0.685959 8.3:+31008507 None:intergenic
TAGTTGTGGTGATATGCTAA+GGG 0.686145 8.3:-31008898 MS.gene067979:CDS
GGTGGTGCAAATAGAAGTTG+TGG 0.710566 8.3:+31009529 None:intergenic
GTTGCTGGTTCTGGACCATG+GGG 0.713612 8.3:-31008642 MS.gene067979:CDS
TGGTAAAAGATGGACCACAG+AGG 0.763177 8.3:-31008347 MS.gene067979:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAATAAAAATTTGAA+GGG + chr8.3:31008262-31008281 None:intergenic 15.0%
!! ATTATAAAATGCTTTCAACA+TGG + chr8.3:31009311-31009330 None:intergenic 20.0%
!! CAACTATCAAATAAACATTT+GGG + chr8.3:31009213-31009232 None:intergenic 20.0%
!! GAAGAAATAAAAATTTGAAG+GGG + chr8.3:31008261-31008280 None:intergenic 20.0%
!! GTGAAGAAATAAAAATTTGA+AGG + chr8.3:31008263-31008282 None:intergenic 20.0%
! AATGTTTACAGCAAAAAAGA+TGG - chr8.3:31009588-31009607 MS.gene067979:CDS 25.0%
! GAAGAGAACAATGAATAAAA+GGG + chr8.3:31008288-31008307 None:intergenic 25.0%
! GCAACTATCAAATAAACATT+TGG + chr8.3:31009214-31009233 None:intergenic 25.0%
! TCTGAATGAATAACATCAAA+TGG + chr8.3:31008725-31008744 None:intergenic 25.0%
! TGAAGAGAACAATGAATAAA+AGG + chr8.3:31008289-31008308 None:intergenic 25.0%
! TTTCAAATCTTGTAGTATCT+TGG - chr8.3:31008780-31008799 MS.gene067979:CDS 25.0%
!! AATGTTTATTTGATAGTTGC+TGG - chr8.3:31009214-31009233 MS.gene067979:CDS 25.0%
!! AGGAAATTTAGAACCAAAAT+TGG - chr8.3:31009082-31009101 MS.gene067979:CDS 25.0%
!! TTTGCAATCAAGTATTTTTC+AGG - chr8.3:31008823-31008842 MS.gene067979:CDS 25.0%
!!! ATTGAAGTTTTTTCATCTTG+TGG + chr8.3:31008596-31008615 None:intergenic 25.0%
!!! TTTCTTGGATTTGTTGTTTA+AGG + chr8.3:31008231-31008250 None:intergenic 25.0%
ACTTCAATCAAAACTCAACA+AGG - chr8.3:31008608-31008627 MS.gene067979:CDS 30.0%
CCTTCATGAAAATGGATAAA+AGG + chr8.3:31008638-31008657 None:intergenic 30.0%
CTTATCTCATTCAAAACCTT+AGG + chr8.3:31008914-31008933 None:intergenic 30.0%
TAAAAATTTGAAGGGGAGTT+TGG + chr8.3:31008254-31008273 None:intergenic 30.0%
TAAAATGCTTTCAACATGGA+AGG + chr8.3:31009307-31009326 None:intergenic 30.0%
TTACTTTAGCTGAATTTGCA+TGG - chr8.3:31008402-31008421 MS.gene067979:CDS 30.0%
TTTATTGTATCTCCACTTGT+CGG + chr8.3:31008666-31008685 None:intergenic 30.0%
! ATTCCTTGGAATTCCAATTT+TGG + chr8.3:31009098-31009117 None:intergenic 30.0%
! CCTTTTATCCATTTTCATGA+AGG - chr8.3:31008635-31008654 MS.gene067979:CDS 30.0%
! TTTTTGTCAATCCAACACTT+AGG - chr8.3:31009341-31009360 MS.gene067979:CDS 30.0%
!! AAAAGAGTACCTTTAATGCT+TGG + chr8.3:31009436-31009455 None:intergenic 30.0%
!! TAAAGCATTGGAACAATATC+AGG - chr8.3:31008682-31008701 MS.gene067979:CDS 30.0%
!!! AAGCATTAAAGGTACTCTTT+TGG - chr8.3:31009435-31009454 MS.gene067979:CDS 30.0%
!!! CTTTTTTGCTGTAAACATTG+AGG + chr8.3:31009587-31009606 None:intergenic 30.0%
!!! TTGCTGTTTTCTCTAGAAAA+TGG - chr8.3:31008474-31008493 MS.gene067979:CDS 30.0%
AATCTTGTAGTATCTTGGCA+TGG - chr8.3:31008785-31008804 MS.gene067979:CDS 35.0%
AGAGTGCATGTGATTGTTAA+TGG - chr8.3:31009019-31009038 MS.gene067979:CDS 35.0%
AGATTCCTAGCTACATAATG+AGG + chr8.3:31008761-31008780 None:intergenic 35.0%
AGGAATGCAAGTTTAGTACT+TGG - chr8.3:31009112-31009131 MS.gene067979:CDS 35.0%
AGTACTAAACTTGCATTCCT+TGG + chr8.3:31009112-31009131 None:intergenic 35.0%
ATAGTTGTGGTGATATGCTA+AGG - chr8.3:31008972-31008991 MS.gene067979:CDS 35.0%
CAAGGGTAGATACAAAATGT+AGG + chr8.3:31009652-31009671 None:intergenic 35.0%
GAACCAAAATTGGAATTCCA+AGG - chr8.3:31009092-31009111 MS.gene067979:CDS 35.0%
GAATATGCTTCATGAAGCAA+AGG + chr8.3:31009172-31009191 None:intergenic 35.0%
GGTTTCAACAATAGCTTACA+AGG - chr8.3:31008881-31008900 MS.gene067979:CDS 35.0%
GTGGAGATACAATAAAGCAT+TGG - chr8.3:31008670-31008689 MS.gene067979:CDS 35.0%
TAGTTGTGGTGATATGCTAA+GGG - chr8.3:31008973-31008992 MS.gene067979:CDS 35.0%
TCAAGGTTTCCAAGCATTAA+AGG - chr8.3:31009424-31009443 MS.gene067979:CDS 35.0%
TGCTTCATGAAGCATATTCA+AGG - chr8.3:31009173-31009192 MS.gene067979:CDS 35.0%
TGTAAGCTATTGTTGAAACC+AGG + chr8.3:31008881-31008900 None:intergenic 35.0%
TTGATCCTAGAACAAGAACT+TGG + chr8.3:31009279-31009298 None:intergenic 35.0%
TTGTTGAAACCAGGTGAAAT+AGG + chr8.3:31008872-31008891 None:intergenic 35.0%
TTTGGAGAAGATGCTGAATT+GGG - chr8.3:31009058-31009077 MS.gene067979:CDS 35.0%
! GAGAAAACAGCAATTTTGAG+AGG + chr8.3:31008467-31008486 None:intergenic 35.0%
! GGGAGATTAGTTAAAGACAA+AGG - chr8.3:31009142-31009161 MS.gene067979:CDS 35.0%
! GTTGCTATTAGTGATAGTTG+TGG - chr8.3:31008959-31008978 MS.gene067979:CDS 35.0%
! TTCTCTAGAAAATGGCCTAT+TGG - chr8.3:31008482-31008501 MS.gene067979:CDS 35.0%
!! CTTACAAGGTGTTATTCCTA+AGG - chr8.3:31008895-31008914 MS.gene067979:CDS 35.0%
!! TATTTGATAGTTGCTGGTTC+TGG - chr8.3:31009220-31009239 MS.gene067979:CDS 35.0%
!!! CTTTTGGTTGATGATGAGTA+TGG - chr8.3:31009451-31009470 MS.gene067979:CDS 35.0%
!!! TGACCAAGTTTTGGATTGTT+GGG + chr8.3:31008375-31008394 None:intergenic 35.0%
AAAGTAAGATCAAGCCCTTG+AGG + chr8.3:31009367-31009386 None:intergenic 40.0%
AGATGGCATTAGCATATGAG+AGG - chr8.3:31009605-31009624 MS.gene067979:CDS 40.0%
AGGGCTTGATCTTACTTTGA+TGG - chr8.3:31009369-31009388 MS.gene067979:CDS 40.0%
ATCACATGCACTCTTCTTGT+AGG + chr8.3:31009013-31009032 None:intergenic 40.0%
CAACAATCCAAAACTTGGTC+AGG - chr8.3:31008374-31008393 MS.gene067979:CDS 40.0%
CACTTCCTCATTATGTAGCT+AGG - chr8.3:31008753-31008772 MS.gene067979:CDS 40.0%
CGGATTCACCTTCATGAAAA+TGG + chr8.3:31008646-31008665 None:intergenic 40.0%
CTTCCCAACAATCCAAAACT+TGG - chr8.3:31008369-31008388 MS.gene067979:CDS 40.0%
CTTGAAGCAGTGGTAAAAGA+TGG - chr8.3:31009514-31009533 MS.gene067979:CDS 40.0%
GCACTCTTCTTGTAGGAATT+TGG + chr8.3:31009006-31009025 None:intergenic 40.0%
GCTTGATCTTACTTTGATGG+AGG - chr8.3:31009372-31009391 MS.gene067979:CDS 40.0%
GGAAACAGGTACAAGGATTT+AGG - chr8.3:31009250-31009269 MS.gene067979:CDS 40.0%
GGAAACCAAGTTCTTGTTCT+AGG - chr8.3:31009271-31009290 MS.gene067979:CDS 40.0%
GTGCAAATAGAAGTTGTGGT+GGG + chr8.3:31008341-31008360 None:intergenic 40.0%
GTTTGGAGAAGATGCTGAAT+TGG - chr8.3:31009057-31009076 MS.gene067979:CDS 40.0%
TAATGTAGAGTCCCTATTGG+AGG - chr8.3:31009489-31009508 MS.gene067979:CDS 40.0%
TCCAATAGGGACTCTACATT+AGG + chr8.3:31009490-31009509 None:intergenic 40.0%
TCCTAATGTAGAGTCCCTAT+TGG - chr8.3:31009486-31009505 MS.gene067979:CDS 40.0%
TGCAAATAGAAGTTGTGGTG+GGG + chr8.3:31008340-31008359 None:intergenic 40.0%
TTTGGATTGTTGGGAAGCAA+AGG + chr8.3:31008366-31008385 None:intergenic 40.0%
! AAGATCACCTGACCAAGTTT+TGG + chr8.3:31008384-31008403 None:intergenic 40.0%
!! AGTTTAGTACTTGGTGTAGC+AGG - chr8.3:31009121-31009140 MS.gene067979:CDS 40.0%
!! GCAATTTTGAGAGGTGAAAG+TGG + chr8.3:31008458-31008477 None:intergenic 40.0%
!! GGTGTTGATGATGATGAGTT+TGG - chr8.3:31009040-31009059 MS.gene067979:CDS 40.0%
!! GTTTAGTACTTGGTGTAGCA+GGG - chr8.3:31009122-31009141 MS.gene067979:CDS 40.0%
!!! CTGACCAAGTTTTGGATTGT+TGG + chr8.3:31008376-31008395 None:intergenic 40.0%
AATCCAACACTTAGGCCTCA+AGG - chr8.3:31009349-31009368 MS.gene067979:CDS 45.0%
ACATTGAGGCAGCATACTCA+CGG + chr8.3:31009573-31009592 None:intergenic 45.0%
ATCCAACACTTAGGCCTCAA+GGG - chr8.3:31009350-31009369 MS.gene067979:CDS 45.0%
ATGAAGGTGAATCCGACAAG+TGG - chr8.3:31008651-31008670 MS.gene067979:CDS 45.0%
CCAGGTGAAATAGGTTCATC+AGG + chr8.3:31008863-31008882 None:intergenic 45.0%
CCTGATGAACCTATTTCACC+TGG - chr8.3:31008860-31008879 MS.gene067979:CDS 45.0%
CTCTTTGAGCTAAAGCAGTG+TGG + chr8.3:31008547-31008566 None:intergenic 45.0%
GAGAAGATGCTGAATTGGGA+AGG - chr8.3:31009062-31009081 MS.gene067979:CDS 45.0%
GCAAATAGAAGTTGTGGTGG+GGG + chr8.3:31008339-31008358 None:intergenic 45.0%
GGAAACCTTGATGCCAAAAG+AGG + chr8.3:31009415-31009434 None:intergenic 45.0%
GGTGCAAATAGAAGTTGTGG+TGG + chr8.3:31008342-31008361 None:intergenic 45.0%
GGTGGTGCAAATAGAAGTTG+TGG + chr8.3:31008345-31008364 None:intergenic 45.0%
GTGTGGAGAAGAAAAAGAGC+TGG + chr8.3:31008317-31008336 None:intergenic 45.0%
TGATGGAGGCTATGATGAGT+GGG - chr8.3:31009386-31009405 MS.gene067979:CDS 45.0%
TGCTTCAAGTGCCTCCAATA+GGG + chr8.3:31009503-31009522 None:intergenic 45.0%
TGGTAAAAGATGGACCACAG+AGG - chr8.3:31009524-31009543 MS.gene067979:CDS 45.0%
TTGAGCTAAAGCAGTGTGGA+GGG + chr8.3:31008543-31008562 None:intergenic 45.0%
TTGATGGAGGCTATGATGAG+TGG - chr8.3:31009385-31009404 MS.gene067979:CDS 45.0%
TTTGAGCTAAAGCAGTGTGG+AGG + chr8.3:31008544-31008563 None:intergenic 45.0%
! CACACTGCTTTAGCTCAAAG+AGG - chr8.3:31008545-31008564 MS.gene067979:CDS 45.0%
! TGAAGGGGAGTTTGGTTTCT+TGG + chr8.3:31008246-31008265 None:intergenic 45.0%
ACCATGGGGAAACAGGTACA+AGG - chr8.3:31009243-31009262 MS.gene067979:CDS 50.0%
CTGCTTCAAGTGCCTCCAAT+AGG + chr8.3:31009504-31009523 None:intergenic 50.0%
GGATTGTTGGGAAGCAAAGG+TGG + chr8.3:31008363-31008382 None:intergenic 50.0%
TCCTTGTACCTGTTTCCCCA+TGG + chr8.3:31009247-31009266 None:intergenic 50.0%
! GATGAGTGGGAAGCCTCTTT+TGG - chr8.3:31009399-31009418 MS.gene067979:CDS 50.0%
! GGAAGCCTCTTTTGGCATCA+AGG - chr8.3:31009407-31009426 MS.gene067979:CDS 50.0%
!! AGTTGCTGGTTCTGGACCAT+GGG - chr8.3:31009228-31009247 MS.gene067979:CDS 50.0%
!! ATTGGAGGCACTTGAAGCAG+TGG - chr8.3:31009504-31009523 MS.gene067979:CDS 50.0%
!! TAGTTGCTGGTTCTGGACCA+TGG - chr8.3:31009227-31009246 MS.gene067979:CDS 50.0%
AGCCCTTGAGGCCTAAGTGT+TGG + chr8.3:31009355-31009374 None:intergenic 55.0%
ATGGACCACAGAGGCTAGCA+AGG - chr8.3:31009533-31009552 MS.gene067979:CDS 55.0%
GAGGCTAGCAAGGAGAGGAA+AGG - chr8.3:31009543-31009562 MS.gene067979:CDS 55.0%
! CAGTGTGGAGGGTGTAAGCA+TGG + chr8.3:31008532-31008551 None:intergenic 55.0%
! GTTCTGGACCATGGGGAAAC+AGG - chr8.3:31009236-31009255 MS.gene067979:CDS 55.0%
! TAGAAGTTGTGGTGGGGGTG+TGG + chr8.3:31008334-31008353 None:intergenic 55.0%
!! GTTGCTGGTTCTGGACCATG+GGG - chr8.3:31009229-31009248 MS.gene067979:CDS 55.0%
ATGGCGTTCCATGCCACCTG+GGG + chr8.3:31008513-31008532 None:intergenic 60.0%
CATGGCGTTCCATGCCACCT+GGG + chr8.3:31008514-31008533 None:intergenic 60.0%
CCACAGAGGCTAGCAAGGAG+AGG - chr8.3:31009538-31009557 MS.gene067979:CDS 60.0%
CCACCTGGGGTGGTACCAAT+AGG + chr8.3:31008500-31008519 None:intergenic 60.0%
CCTATTGGTACCACCCCAGG+TGG - chr8.3:31008497-31008516 MS.gene067979:CDS 60.0%
TGGCCTATTGGTACCACCCC+AGG - chr8.3:31008494-31008513 MS.gene067979:CDS 60.0%
! CCTCTCCTTGCTAGCCTCTG+TGG + chr8.3:31009541-31009560 None:intergenic 60.0%
GCATGGCGTTCCATGCCACC+TGG + chr8.3:31008515-31008534 None:intergenic 65.0%
TGGTACCACCCCAGGTGGCA+TGG - chr8.3:31008502-31008521 MS.gene067979:CDS 65.0%
GCGTTCCATGCCACCTGGGG+TGG + chr8.3:31008510-31008529 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 31008221 31009672 31008221 ID=MS.gene067979
chr8.3 mRNA 31008221 31009672 31008221 ID=MS.gene067979.t1;Parent=MS.gene067979
chr8.3 exon 31008221 31009672 31008221 ID=MS.gene067979.t1.exon1;Parent=MS.gene067979.t1
chr8.3 CDS 31008221 31009672 31008221 ID=cds.MS.gene067979.t1;Parent=MS.gene067979.t1
Gene Sequence

>MS.gene067979

ATGATGGCCTTAAACAACAAATCCAAGAAACCAAACTCCCCTTCAAATTTTTATTTCTTCACAACCCTTTTATTCATTGTTCTCTTCACAATACCAGCTCTTTTTCTTCTCCACACCCCCACCACAACTTCTATTTGCACCACCTTTGCTTCCCAACAATCCAAAACTTGGTCAGGTGATCTTACTTTAGCTGAATTTGCATGGAACAAGCTCTCATTTTCTCAACGCAAAAAACCACTTTCACCTCTCAAAATTGCTGTTTTCTCTAGAAAATGGCCTATTGGTACCACCCCAGGTGGCATGGAACGCCATGCTTACACCCTCCACACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCACAAGATGAAAAAACTTCAATCAAAACTCAACAAGGTTATCCTTTTATCCATTTTCATGAAGGTGAATCCGACAAGTGGAGATACAATAAAGCATTGGAACAATATCAGGAAGAGAACAAGAAAGAACCATTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTTCAAATCTTGTAGTATCTTGGCATGGAATAGCACTTGAGAGTTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGACCTGATGAACCTATTTCACCTGGTTTCAACAATAGCTTACAAGGTGTTATTCCTAAGGTTTTGAATGAGATAAGATTCTTTAAGAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGTGATATGCTAAGGGATTTCTACCAAATTCCTACAAGAAGAGTGCATGTGATTGTTAATGGTGTTGATGATGATGAGTTTGGAGAAGATGCTGAATTGGGAAGGAAATTTAGAACCAAAATTGGAATTCCAAGGAATGCAAGTTTAGTACTTGGTGTAGCAGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTCATGAAGCATATTCAAGGCTAATAACAAAACACCCAAATGTTTATTTGATAGTTGCTGGTTCTGGACCATGGGGAAACAGGTACAAGGATTTAGGAAACCAAGTTCTTGTTCTAGGATCAATGAGTCCTTCCATGTTGAAAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTTTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTACATGTTCTCTCCTAATGTAGAGTCCCTATTGGAGGCACTTGAAGCAGTGGTAAAAGATGGACCACAGAGGCTAGCAAGGAGAGGAAAGGCTTGCCGTGAGTATGCTGCCTCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA

Protein sequence

>MS.gene067979.t1

MMALNNKSKKPNSPSNFYFFTTLLFIVLFTIPALFLLHTPTTTSICTTFASQQSKTWSGDLTLAEFAWNKLSFSQRKKPLSPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKTQQGYPFIHFHEGESDKWRYNKALEQYQEENKKEPFDVIHSESVALPHYVARNLSNLVVSWHGIALESLQSSIFQDLARRPDEPISPGFNNSLQGVIPKVLNEIRFFKSYAHHVAISDSCGDMLRDFYQIPTRRVHVIVNGVDDDEFGEDAELGRKFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAYSRLITKHPNVYLIVAGSGPWGNRYKDLGNQVLVLGSMSPSMLKAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGYMFSPNVESLLEALEAVVKDGPQRLARRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP