Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067979.t1 | XP_003628986.2 | 96.9 | 482 | 15 | 0 | 2 | 483 | 11 | 492 | 1.90E-274 | 954.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067979.t1 | P26470 | 26.0 | 204 | 125 | 7 | 257 | 444 | 150 | 343 | 7.0e-12 | 73.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067979.t1 | G7L745 | 96.9 | 482 | 15 | 0 | 2 | 483 | 1 | 482 | 1.3e-274 | 954.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene067979 | -0.862952 | 3.52E-64 | -1.69E-46 |
MS.gene049217 | MS.gene067979 | -0.853042 | 3.10E-61 | -1.69E-46 |
MS.gene049222 | MS.gene067979 | -0.858243 | 9.42E-63 | -1.69E-46 |
MS.gene049281 | MS.gene067979 | 0.847952 | 8.35E-60 | -1.69E-46 |
MS.gene049285 | MS.gene067979 | -0.859678 | 3.50E-63 | -1.69E-46 |
MS.gene049312 | MS.gene067979 | 0.817942 | 2.54E-52 | -1.69E-46 |
MS.gene049320 | MS.gene067979 | -0.859188 | 4.92E-63 | -1.69E-46 |
MS.gene049483 | MS.gene067979 | 0.824242 | 8.98E-54 | -1.69E-46 |
MS.gene049609 | MS.gene067979 | -0.81535 | 9.67E-52 | -1.69E-46 |
MS.gene049627 | MS.gene067979 | -0.863105 | 3.16E-64 | -1.69E-46 |
MS.gene049633 | MS.gene067979 | -0.801759 | 7.74E-49 | -1.69E-46 |
MS.gene05010 | MS.gene067979 | -0.842531 | 2.44E-58 | -1.69E-46 |
MS.gene050129 | MS.gene067979 | 0.841692 | 4.07E-58 | -1.69E-46 |
MS.gene050163 | MS.gene067979 | -0.86812 | 8.27E-66 | -1.69E-46 |
MS.gene050165 | MS.gene067979 | -0.861199 | 1.21E-63 | -1.69E-46 |
MS.gene050333 | MS.gene067979 | -0.823246 | 1.54E-53 | -1.69E-46 |
MS.gene050353 | MS.gene067979 | 0.847543 | 1.08E-59 | -1.69E-46 |
MS.gene050354 | MS.gene067979 | 0.805639 | 1.21E-49 | -1.69E-46 |
MS.gene050363 | MS.gene067979 | 0.81085 | 9.39E-51 | -1.69E-46 |
MS.gene050381 | MS.gene067979 | 0.842332 | 2.76E-58 | -1.69E-46 |
MS.gene050504 | MS.gene067979 | -0.886808 | 2.48E-72 | -1.69E-46 |
MS.gene050518 | MS.gene067979 | -0.853237 | 2.73E-61 | -1.69E-46 |
MS.gene050538 | MS.gene067979 | -0.817265 | 3.61E-52 | -1.69E-46 |
MS.gene050577 | MS.gene067979 | -0.834395 | 3.07E-56 | -1.69E-46 |
MS.gene050612 | MS.gene067979 | -0.860758 | 1.65E-63 | -1.69E-46 |
MS.gene050675 | MS.gene067979 | -0.824382 | 8.32E-54 | -1.69E-46 |
MS.gene050699 | MS.gene067979 | -0.856838 | 2.45E-62 | -1.69E-46 |
MS.gene050747 | MS.gene067979 | -0.804539 | 2.06E-49 | -1.69E-46 |
MS.gene050772 | MS.gene067979 | -0.819724 | 1.00E-52 | -1.69E-46 |
MS.gene05080 | MS.gene067979 | -0.803696 | 3.08E-49 | -1.69E-46 |
MS.gene050868 | MS.gene067979 | -0.820155 | 7.96E-53 | -1.69E-46 |
MS.gene050871 | MS.gene067979 | -0.81864 | 1.76E-52 | -1.69E-46 |
MS.gene05087 | MS.gene067979 | -0.807222 | 5.62E-50 | -1.69E-46 |
MS.gene050883 | MS.gene067979 | 0.83808 | 3.56E-57 | -1.69E-46 |
MS.gene050950 | MS.gene067979 | -0.800232 | 1.59E-48 | -1.69E-46 |
MS.gene050986 | MS.gene067979 | -0.860608 | 1.83E-63 | -1.69E-46 |
MS.gene05100 | MS.gene067979 | -0.831186 | 1.92E-55 | -1.69E-46 |
MS.gene051127 | MS.gene067979 | 0.819248 | 1.28E-52 | -1.69E-46 |
MS.gene051317 | MS.gene067979 | -0.816955 | 4.23E-52 | -1.69E-46 |
MS.gene051364 | MS.gene067979 | 0.840984 | 6.25E-58 | -1.69E-46 |
MS.gene051366 | MS.gene067979 | 0.833056 | 6.64E-56 | -1.69E-46 |
MS.gene051367 | MS.gene067979 | 0.807434 | 5.07E-50 | -1.69E-46 |
MS.gene05141 | MS.gene067979 | 0.816562 | 5.19E-52 | -1.69E-46 |
MS.gene051551 | MS.gene067979 | -0.813102 | 3.03E-51 | -1.69E-46 |
MS.gene051564 | MS.gene067979 | -0.810097 | 1.37E-50 | -1.69E-46 |
MS.gene051694 | MS.gene067979 | -0.842509 | 2.48E-58 | -1.69E-46 |
MS.gene051810 | MS.gene067979 | -0.823462 | 1.37E-53 | -1.69E-46 |
MS.gene051858 | MS.gene067979 | -0.811814 | 5.80E-51 | -1.69E-46 |
MS.gene051946 | MS.gene067979 | 0.827594 | 1.44E-54 | -1.69E-46 |
MS.gene052015 | MS.gene067979 | 0.811549 | 6.62E-51 | -1.69E-46 |
MS.gene052164 | MS.gene067979 | -0.835935 | 1.26E-56 | -1.69E-46 |
MS.gene052482 | MS.gene067979 | -0.839417 | 1.60E-57 | -1.69E-46 |
MS.gene052486 | MS.gene067979 | -0.839758 | 1.31E-57 | -1.69E-46 |
MS.gene052503 | MS.gene067979 | -0.80629 | 8.84E-50 | -1.69E-46 |
MS.gene052670 | MS.gene067979 | -0.822895 | 1.85E-53 | -1.69E-46 |
MS.gene052823 | MS.gene067979 | -0.804787 | 1.83E-49 | -1.69E-46 |
MS.gene052825 | MS.gene067979 | -0.805753 | 1.15E-49 | -1.69E-46 |
MS.gene052966 | MS.gene067979 | -0.821337 | 4.26E-53 | -1.69E-46 |
MS.gene053203 | MS.gene067979 | -0.840683 | 7.50E-58 | -1.69E-46 |
MS.gene053207 | MS.gene067979 | -0.817945 | 2.53E-52 | -1.69E-46 |
MS.gene053213 | MS.gene067979 | -0.842192 | 3.01E-58 | -1.69E-46 |
MS.gene053286 | MS.gene067979 | -0.843552 | 1.31E-58 | -1.69E-46 |
MS.gene053420 | MS.gene067979 | 0.819921 | 9.01E-53 | -1.69E-46 |
MS.gene053421 | MS.gene067979 | 0.807659 | 4.54E-50 | -1.69E-46 |
MS.gene053549 | MS.gene067979 | 0.841159 | 5.63E-58 | -1.69E-46 |
MS.gene053561 | MS.gene067979 | 0.83711 | 6.31E-57 | -1.69E-46 |
MS.gene053574 | MS.gene067979 | -0.801851 | 7.41E-49 | -1.69E-46 |
MS.gene053632 | MS.gene067979 | -0.822763 | 1.99E-53 | -1.69E-46 |
MS.gene054595 | MS.gene067979 | -0.81747 | 3.24E-52 | -1.69E-46 |
MS.gene054600 | MS.gene067979 | -0.829268 | 5.66E-55 | -1.69E-46 |
MS.gene054616 | MS.gene067979 | 0.848761 | 4.99E-60 | -1.69E-46 |
MS.gene054642 | MS.gene067979 | -0.849695 | 2.74E-60 | -1.69E-46 |
MS.gene054706 | MS.gene067979 | 0.807832 | 4.17E-50 | -1.69E-46 |
MS.gene054708 | MS.gene067979 | 0.819478 | 1.14E-52 | -1.69E-46 |
MS.gene05470 | MS.gene067979 | -0.855032 | 8.28E-62 | -1.69E-46 |
MS.gene054954 | MS.gene067979 | -0.851409 | 9.04E-61 | -1.69E-46 |
MS.gene054959 | MS.gene067979 | 0.839285 | 1.74E-57 | -1.69E-46 |
MS.gene055154 | MS.gene067979 | 0.842839 | 2.02E-58 | -1.69E-46 |
MS.gene055202 | MS.gene067979 | 0.814094 | 1.84E-51 | -1.69E-46 |
MS.gene055206 | MS.gene067979 | -0.801769 | 7.70E-49 | -1.69E-46 |
MS.gene055362 | MS.gene067979 | -0.871879 | 4.88E-67 | -1.69E-46 |
MS.gene055502 | MS.gene067979 | -0.867213 | 1.62E-65 | -1.69E-46 |
MS.gene055577 | MS.gene067979 | -0.872794 | 2.42E-67 | -1.69E-46 |
MS.gene055748 | MS.gene067979 | -0.812407 | 4.31E-51 | -1.69E-46 |
MS.gene055751 | MS.gene067979 | -0.807865 | 4.10E-50 | -1.69E-46 |
MS.gene05589 | MS.gene067979 | -0.827717 | 1.34E-54 | -1.69E-46 |
MS.gene055941 | MS.gene067979 | -0.807343 | 5.29E-50 | -1.69E-46 |
MS.gene056083 | MS.gene067979 | -0.810377 | 1.19E-50 | -1.69E-46 |
MS.gene056311 | MS.gene067979 | 0.81633 | 5.85E-52 | -1.69E-46 |
MS.gene056374 | MS.gene067979 | -0.813887 | 2.04E-51 | -1.69E-46 |
MS.gene056504 | MS.gene067979 | -0.843439 | 1.40E-58 | -1.69E-46 |
MS.gene056510 | MS.gene067979 | -0.826534 | 2.57E-54 | -1.69E-46 |
MS.gene056550 | MS.gene067979 | 0.988199 | 4.32E-173 | -1.69E-46 |
MS.gene056610 | MS.gene067979 | -0.82432 | 8.60E-54 | -1.69E-46 |
MS.gene056657 | MS.gene067979 | -0.844922 | 5.60E-59 | -1.69E-46 |
MS.gene056692 | MS.gene067979 | -0.842421 | 2.61E-58 | -1.69E-46 |
MS.gene057014 | MS.gene067979 | 0.818396 | 2.00E-52 | -1.69E-46 |
MS.gene057416 | MS.gene067979 | -0.808542 | 2.94E-50 | -1.69E-46 |
MS.gene057658 | MS.gene067979 | -0.823293 | 1.50E-53 | -1.69E-46 |
MS.gene057831 | MS.gene067979 | -0.825498 | 4.54E-54 | -1.69E-46 |
MS.gene058338 | MS.gene067979 | -0.801399 | 9.17E-49 | -1.69E-46 |
MS.gene05837 | MS.gene067979 | -0.819041 | 1.43E-52 | -1.69E-46 |
MS.gene058419 | MS.gene067979 | -0.856252 | 3.65E-62 | -1.69E-46 |
MS.gene058544 | MS.gene067979 | -0.857267 | 1.83E-62 | -1.69E-46 |
MS.gene058773 | MS.gene067979 | -0.861219 | 1.20E-63 | -1.69E-46 |
MS.gene058838 | MS.gene067979 | -0.818033 | 2.42E-52 | -1.69E-46 |
MS.gene059022 | MS.gene067979 | -0.884171 | 2.41E-71 | -1.69E-46 |
MS.gene059023 | MS.gene067979 | -0.850576 | 1.55E-60 | -1.69E-46 |
MS.gene05914 | MS.gene067979 | -0.818966 | 1.49E-52 | -1.69E-46 |
MS.gene059677 | MS.gene067979 | -0.883848 | 3.17E-71 | -1.69E-46 |
MS.gene059718 | MS.gene067979 | -0.869276 | 3.50E-66 | -1.69E-46 |
MS.gene059756 | MS.gene067979 | -0.830781 | 2.42E-55 | -1.69E-46 |
MS.gene059801 | MS.gene067979 | -0.821191 | 4.60E-53 | -1.69E-46 |
MS.gene059865 | MS.gene067979 | -0.8409 | 6.58E-58 | -1.69E-46 |
MS.gene059902 | MS.gene067979 | -0.820517 | 6.58E-53 | -1.69E-46 |
MS.gene059916 | MS.gene067979 | 0.808193 | 3.49E-50 | -1.69E-46 |
MS.gene060337 | MS.gene067979 | 0.820653 | 6.12E-53 | -1.69E-46 |
MS.gene060602 | MS.gene067979 | 0.803079 | 4.14E-49 | -1.69E-46 |
MS.gene060703 | MS.gene067979 | -0.834954 | 2.22E-56 | -1.69E-46 |
MS.gene060762 | MS.gene067979 | -0.860295 | 2.28E-63 | -1.69E-46 |
MS.gene06077 | MS.gene067979 | -0.885373 | 8.60E-72 | -1.69E-46 |
MS.gene060823 | MS.gene067979 | 0.807383 | 5.19E-50 | -1.69E-46 |
MS.gene06092 | MS.gene067979 | -0.837704 | 4.44E-57 | -1.69E-46 |
MS.gene060982 | MS.gene067979 | -0.822614 | 2.16E-53 | -1.69E-46 |
MS.gene061150 | MS.gene067979 | -0.845484 | 3.95E-59 | -1.69E-46 |
MS.gene061226 | MS.gene067979 | 0.841047 | 6.02E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067979.t1 | MTR_8g071900 | 96.888 | 482 | 15 | 0 | 2 | 483 | 1 | 482 | 0.0 | 980 |
MS.gene067979.t1 | MTR_5g026360 | 75.153 | 491 | 108 | 5 | 2 | 483 | 1 | 486 | 0.0 | 749 |
MS.gene067979.t1 | MTR_8g068840 | 46.327 | 490 | 229 | 13 | 15 | 482 | 7 | 484 | 6.77e-136 | 401 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067979.t1 | AT4G19460 | 64.242 | 495 | 162 | 6 | 2 | 483 | 24 | 516 | 0.0 | 647 |
MS.gene067979.t1 | AT1G73160 | 49.660 | 441 | 204 | 8 | 50 | 483 | 52 | 481 | 6.91e-154 | 447 |
MS.gene067979.t1 | AT5G59070 | 47.379 | 477 | 199 | 12 | 43 | 480 | 38 | 501 | 2.31e-137 | 405 |
Find 111 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTTGGATTTGTTGTTTA+AGG | 0.138348 | 8.3:+31009643 | None:intergenic |
CGGATTCACCTTCATGAAAA+TGG | 0.183373 | 8.3:+31009228 | None:intergenic |
TGAAGAGAACAATGAATAAA+AGG | 0.207439 | 8.3:+31009585 | None:intergenic |
ATTCCTTGGAATTCCAATTT+TGG | 0.210495 | 8.3:+31008776 | None:intergenic |
AGGAAATTTAGAACCAAAAT+TGG | 0.211055 | 8.3:-31008789 | MS.gene067979:CDS |
GCACTCTTCTTGTAGGAATT+TGG | 0.215738 | 8.3:+31008868 | None:intergenic |
TGAAGGGGAGTTTGGTTTCT+TGG | 0.222371 | 8.3:+31009628 | None:intergenic |
GGAAACCAAGTTCTTGTTCT+AGG | 0.232719 | 8.3:-31008600 | MS.gene067979:CDS |
CCTTCATGAAAATGGATAAA+AGG | 0.253935 | 8.3:+31009236 | None:intergenic |
TATTTGATAGTTGCTGGTTC+TGG | 0.291225 | 8.3:-31008651 | MS.gene067979:CDS |
AAGATCACCTGACCAAGTTT+TGG | 0.306569 | 8.3:+31009490 | None:intergenic |
TTCTCTAGAAAATGGCCTAT+TGG | 0.310215 | 8.3:-31009389 | MS.gene067979:CDS |
TCAAGGTTTCCAAGCATTAA+AGG | 0.315496 | 8.3:-31008447 | MS.gene067979:CDS |
GGAAACAGGTACAAGGATTT+AGG | 0.322504 | 8.3:-31008621 | MS.gene067979:CDS |
GATGAGTGGGAAGCCTCTTT+TGG | 0.327010 | 8.3:-31008472 | MS.gene067979:CDS |
GCAACTATCAAATAAACATT+TGG | 0.327090 | 8.3:+31008660 | None:intergenic |
TAAAGCATTGGAACAATATC+AGG | 0.329940 | 8.3:-31009189 | MS.gene067979:CDS |
TTTCAAATCTTGTAGTATCT+TGG | 0.333393 | 8.3:-31009091 | MS.gene067979:CDS |
AATGTTTATTTGATAGTTGC+TGG | 0.333546 | 8.3:-31008657 | MS.gene067979:CDS |
TTGTTGAAACCAGGTGAAAT+AGG | 0.336844 | 8.3:+31009002 | None:intergenic |
AGGGCTTGATCTTACTTTGA+TGG | 0.338305 | 8.3:-31008502 | MS.gene067979:CDS |
CTGCTTCAAGTGCCTCCAAT+AGG | 0.361091 | 8.3:+31008370 | None:intergenic |
AAGCATTAAAGGTACTCTTT+TGG | 0.369662 | 8.3:-31008436 | MS.gene067979:CDS |
CTTCCCAACAATCCAAAACT+TGG | 0.375866 | 8.3:-31009502 | MS.gene067979:CDS |
AGAGTGCATGTGATTGTTAA+TGG | 0.375953 | 8.3:-31008852 | MS.gene067979:CDS |
AGTTTAGTACTTGGTGTAGC+AGG | 0.387644 | 8.3:-31008750 | MS.gene067979:CDS |
GGTGTTGATGATGATGAGTT+TGG | 0.387915 | 8.3:-31008831 | MS.gene067979:CDS |
GTTTGGAGAAGATGCTGAAT+TGG | 0.391518 | 8.3:-31008814 | MS.gene067979:CDS |
TCCTAATGTAGAGTCCCTAT+TGG | 0.412693 | 8.3:-31008385 | MS.gene067979:CDS |
GCATGGCGTTCCATGCCACC+TGG | 0.416172 | 8.3:+31009359 | None:intergenic |
TGCTTCATGAAGCATATTCA+AGG | 0.416760 | 8.3:-31008698 | MS.gene067979:CDS |
CCAGGTGAAATAGGTTCATC+AGG | 0.418764 | 8.3:+31009011 | None:intergenic |
GTTCTGGACCATGGGGAAAC+AGG | 0.421798 | 8.3:-31008635 | MS.gene067979:CDS |
TTTATTGTATCTCCACTTGT+CGG | 0.431325 | 8.3:+31009208 | None:intergenic |
AAAAGAGTACCTTTAATGCT+TGG | 0.433398 | 8.3:+31008438 | None:intergenic |
AGTACTAAACTTGCATTCCT+TGG | 0.434042 | 8.3:+31008762 | None:intergenic |
CTTATCTCATTCAAAACCTT+AGG | 0.435386 | 8.3:+31008960 | None:intergenic |
TCTGAATGAATAACATCAAA+TGG | 0.436235 | 8.3:+31009149 | None:intergenic |
CAACTATCAAATAAACATTT+GGG | 0.437055 | 8.3:+31008661 | None:intergenic |
CTTACAAGGTGTTATTCCTA+AGG | 0.438410 | 8.3:-31008976 | MS.gene067979:CDS |
CCACCTGGGGTGGTACCAAT+AGG | 0.438791 | 8.3:+31009374 | None:intergenic |
ATCACATGCACTCTTCTTGT+AGG | 0.440984 | 8.3:+31008861 | None:intergenic |
GGAAACCTTGATGCCAAAAG+AGG | 0.456922 | 8.3:+31008459 | None:intergenic |
TGCTTCAAGTGCCTCCAATA+GGG | 0.458044 | 8.3:+31008371 | None:intergenic |
TCCAATAGGGACTCTACATT+AGG | 0.459828 | 8.3:+31008384 | None:intergenic |
TTTGGAGAAGATGCTGAATT+GGG | 0.460751 | 8.3:-31008813 | MS.gene067979:CDS |
CAACAATCCAAAACTTGGTC+AGG | 0.467982 | 8.3:-31009497 | MS.gene067979:CDS |
GAAGAGAACAATGAATAAAA+GGG | 0.477676 | 8.3:+31009586 | None:intergenic |
AGGAATGCAAGTTTAGTACT+TGG | 0.477726 | 8.3:-31008759 | MS.gene067979:CDS |
TTACTTTAGCTGAATTTGCA+TGG | 0.499438 | 8.3:-31009469 | MS.gene067979:CDS |
GAACCAAAATTGGAATTCCA+AGG | 0.499871 | 8.3:-31008779 | MS.gene067979:CDS |
TTGATCCTAGAACAAGAACT+TGG | 0.499984 | 8.3:+31008595 | None:intergenic |
TGGCCTATTGGTACCACCCC+AGG | 0.504477 | 8.3:-31009377 | MS.gene067979:CDS |
CACTTCCTCATTATGTAGCT+AGG | 0.506156 | 8.3:-31009118 | MS.gene067979:CDS |
CCTGATGAACCTATTTCACC+TGG | 0.516853 | 8.3:-31009011 | MS.gene067979:CDS |
TAAAATGCTTTCAACATGGA+AGG | 0.518265 | 8.3:+31008567 | None:intergenic |
AGCCCTTGAGGCCTAAGTGT+TGG | 0.519619 | 8.3:+31008519 | None:intergenic |
TGCAAATAGAAGTTGTGGTG+GGG | 0.527161 | 8.3:+31009534 | None:intergenic |
TTTGGATTGTTGGGAAGCAA+AGG | 0.528822 | 8.3:+31009508 | None:intergenic |
TAGTTGCTGGTTCTGGACCA+TGG | 0.529632 | 8.3:-31008644 | MS.gene067979:CDS |
TGGTACCACCCCAGGTGGCA+TGG | 0.533887 | 8.3:-31009369 | MS.gene067979:CDS |
GCGTTCCATGCCACCTGGGG+TGG | 0.535238 | 8.3:+31009364 | None:intergenic |
CCTCTCCTTGCTAGCCTCTG+TGG | 0.535739 | 8.3:+31008333 | None:intergenic |
GCAAATAGAAGTTGTGGTGG+GGG | 0.538698 | 8.3:+31009535 | None:intergenic |
CATGGCGTTCCATGCCACCT+GGG | 0.538759 | 8.3:+31009360 | None:intergenic |
GGTTTCAACAATAGCTTACA+AGG | 0.542677 | 8.3:-31008990 | MS.gene067979:CDS |
CTTGAAGCAGTGGTAAAAGA+TGG | 0.544526 | 8.3:-31008357 | MS.gene067979:CDS |
ATGGACCACAGAGGCTAGCA+AGG | 0.545711 | 8.3:-31008338 | MS.gene067979:CDS |
TCCTTGTACCTGTTTCCCCA+TGG | 0.550684 | 8.3:+31008627 | None:intergenic |
TAATGTAGAGTCCCTATTGG+AGG | 0.552827 | 8.3:-31008382 | MS.gene067979:CDS |
AATCCAACACTTAGGCCTCA+AGG | 0.556259 | 8.3:-31008522 | MS.gene067979:CDS |
GTTTAGTACTTGGTGTAGCA+GGG | 0.557485 | 8.3:-31008749 | MS.gene067979:CDS |
CAAGGGTAGATACAAAATGT+AGG | 0.561364 | 8.3:+31008222 | None:intergenic |
AGTTGCTGGTTCTGGACCAT+GGG | 0.561648 | 8.3:-31008643 | MS.gene067979:CDS |
GTGCAAATAGAAGTTGTGGT+GGG | 0.562861 | 8.3:+31009533 | None:intergenic |
AGATTCCTAGCTACATAATG+AGG | 0.569582 | 8.3:+31009113 | None:intergenic |
ATCCAACACTTAGGCCTCAA+GGG | 0.569701 | 8.3:-31008521 | MS.gene067979:CDS |
GTGGAGATACAATAAAGCAT+TGG | 0.571391 | 8.3:-31009201 | MS.gene067979:CDS |
GAGAAGATGCTGAATTGGGA+AGG | 0.579306 | 8.3:-31008809 | MS.gene067979:CDS |
CACACTGCTTTAGCTCAAAG+AGG | 0.588865 | 8.3:-31009326 | MS.gene067979:CDS |
ATAGTTGTGGTGATATGCTA+AGG | 0.588981 | 8.3:-31008899 | MS.gene067979:CDS |
GAATATGCTTCATGAAGCAA+AGG | 0.590704 | 8.3:+31008702 | None:intergenic |
TTGAGCTAAAGCAGTGTGGA+GGG | 0.593536 | 8.3:+31009331 | None:intergenic |
GGGAGATTAGTTAAAGACAA+AGG | 0.593695 | 8.3:-31008729 | MS.gene067979:CDS |
CAGTGTGGAGGGTGTAAGCA+TGG | 0.595982 | 8.3:+31009342 | None:intergenic |
GCTTGATCTTACTTTGATGG+AGG | 0.601103 | 8.3:-31008499 | MS.gene067979:CDS |
ATGGCGTTCCATGCCACCTG+GGG | 0.602494 | 8.3:+31009361 | None:intergenic |
ATGAAGGTGAATCCGACAAG+TGG | 0.608022 | 8.3:-31009220 | MS.gene067979:CDS |
AATCTTGTAGTATCTTGGCA+TGG | 0.608621 | 8.3:-31009086 | MS.gene067979:CDS |
TGTAAGCTATTGTTGAAACC+AGG | 0.610612 | 8.3:+31008993 | None:intergenic |
ATTGGAGGCACTTGAAGCAG+TGG | 0.613871 | 8.3:-31008367 | MS.gene067979:CDS |
TTTGAGCTAAAGCAGTGTGG+AGG | 0.615128 | 8.3:+31009330 | None:intergenic |
GGATTGTTGGGAAGCAAAGG+TGG | 0.619179 | 8.3:+31009511 | None:intergenic |
ACCATGGGGAAACAGGTACA+AGG | 0.622933 | 8.3:-31008628 | MS.gene067979:CDS |
TGATGGAGGCTATGATGAGT+GGG | 0.626959 | 8.3:-31008485 | MS.gene067979:CDS |
CTCTTTGAGCTAAAGCAGTG+TGG | 0.626998 | 8.3:+31009327 | None:intergenic |
ACATTGAGGCAGCATACTCA+CGG | 0.632335 | 8.3:+31008301 | None:intergenic |
GAGGCTAGCAAGGAGAGGAA+AGG | 0.634727 | 8.3:-31008328 | MS.gene067979:CDS |
AGATGGCATTAGCATATGAG+AGG | 0.637476 | 8.3:-31008266 | MS.gene067979:CDS |
GGTGCAAATAGAAGTTGTGG+TGG | 0.639655 | 8.3:+31009532 | None:intergenic |
CCACAGAGGCTAGCAAGGAG+AGG | 0.642590 | 8.3:-31008333 | MS.gene067979:CDS |
TTGATGGAGGCTATGATGAG+TGG | 0.649365 | 8.3:-31008486 | MS.gene067979:CDS |
ACTTCAATCAAAACTCAACA+AGG | 0.658763 | 8.3:-31009263 | MS.gene067979:CDS |
ATTATAAAATGCTTTCAACA+TGG | 0.659339 | 8.3:+31008563 | None:intergenic |
GTTGCTATTAGTGATAGTTG+TGG | 0.667338 | 8.3:-31008912 | MS.gene067979:CDS |
CCTATTGGTACCACCCCAGG+TGG | 0.674831 | 8.3:-31009374 | MS.gene067979:CDS |
AAAGTAAGATCAAGCCCTTG+AGG | 0.685959 | 8.3:+31008507 | None:intergenic |
TAGTTGTGGTGATATGCTAA+GGG | 0.686145 | 8.3:-31008898 | MS.gene067979:CDS |
GGTGGTGCAAATAGAAGTTG+TGG | 0.710566 | 8.3:+31009529 | None:intergenic |
GTTGCTGGTTCTGGACCATG+GGG | 0.713612 | 8.3:-31008642 | MS.gene067979:CDS |
TGGTAAAAGATGGACCACAG+AGG | 0.763177 | 8.3:-31008347 | MS.gene067979:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAGAAATAAAAATTTGAA+GGG | + | chr8.3:31008262-31008281 | None:intergenic | 15.0% |
!! | ATTATAAAATGCTTTCAACA+TGG | + | chr8.3:31009311-31009330 | None:intergenic | 20.0% |
!! | CAACTATCAAATAAACATTT+GGG | + | chr8.3:31009213-31009232 | None:intergenic | 20.0% |
!! | GAAGAAATAAAAATTTGAAG+GGG | + | chr8.3:31008261-31008280 | None:intergenic | 20.0% |
!! | GTGAAGAAATAAAAATTTGA+AGG | + | chr8.3:31008263-31008282 | None:intergenic | 20.0% |
! | AATGTTTACAGCAAAAAAGA+TGG | - | chr8.3:31009588-31009607 | MS.gene067979:CDS | 25.0% |
! | GAAGAGAACAATGAATAAAA+GGG | + | chr8.3:31008288-31008307 | None:intergenic | 25.0% |
! | GCAACTATCAAATAAACATT+TGG | + | chr8.3:31009214-31009233 | None:intergenic | 25.0% |
! | TCTGAATGAATAACATCAAA+TGG | + | chr8.3:31008725-31008744 | None:intergenic | 25.0% |
! | TGAAGAGAACAATGAATAAA+AGG | + | chr8.3:31008289-31008308 | None:intergenic | 25.0% |
! | TTTCAAATCTTGTAGTATCT+TGG | - | chr8.3:31008780-31008799 | MS.gene067979:CDS | 25.0% |
!! | AATGTTTATTTGATAGTTGC+TGG | - | chr8.3:31009214-31009233 | MS.gene067979:CDS | 25.0% |
!! | AGGAAATTTAGAACCAAAAT+TGG | - | chr8.3:31009082-31009101 | MS.gene067979:CDS | 25.0% |
!! | TTTGCAATCAAGTATTTTTC+AGG | - | chr8.3:31008823-31008842 | MS.gene067979:CDS | 25.0% |
!!! | ATTGAAGTTTTTTCATCTTG+TGG | + | chr8.3:31008596-31008615 | None:intergenic | 25.0% |
!!! | TTTCTTGGATTTGTTGTTTA+AGG | + | chr8.3:31008231-31008250 | None:intergenic | 25.0% |
ACTTCAATCAAAACTCAACA+AGG | - | chr8.3:31008608-31008627 | MS.gene067979:CDS | 30.0% | |
CCTTCATGAAAATGGATAAA+AGG | + | chr8.3:31008638-31008657 | None:intergenic | 30.0% | |
CTTATCTCATTCAAAACCTT+AGG | + | chr8.3:31008914-31008933 | None:intergenic | 30.0% | |
TAAAAATTTGAAGGGGAGTT+TGG | + | chr8.3:31008254-31008273 | None:intergenic | 30.0% | |
TAAAATGCTTTCAACATGGA+AGG | + | chr8.3:31009307-31009326 | None:intergenic | 30.0% | |
TTACTTTAGCTGAATTTGCA+TGG | - | chr8.3:31008402-31008421 | MS.gene067979:CDS | 30.0% | |
TTTATTGTATCTCCACTTGT+CGG | + | chr8.3:31008666-31008685 | None:intergenic | 30.0% | |
! | ATTCCTTGGAATTCCAATTT+TGG | + | chr8.3:31009098-31009117 | None:intergenic | 30.0% |
! | CCTTTTATCCATTTTCATGA+AGG | - | chr8.3:31008635-31008654 | MS.gene067979:CDS | 30.0% |
! | TTTTTGTCAATCCAACACTT+AGG | - | chr8.3:31009341-31009360 | MS.gene067979:CDS | 30.0% |
!! | AAAAGAGTACCTTTAATGCT+TGG | + | chr8.3:31009436-31009455 | None:intergenic | 30.0% |
!! | TAAAGCATTGGAACAATATC+AGG | - | chr8.3:31008682-31008701 | MS.gene067979:CDS | 30.0% |
!!! | AAGCATTAAAGGTACTCTTT+TGG | - | chr8.3:31009435-31009454 | MS.gene067979:CDS | 30.0% |
!!! | CTTTTTTGCTGTAAACATTG+AGG | + | chr8.3:31009587-31009606 | None:intergenic | 30.0% |
!!! | TTGCTGTTTTCTCTAGAAAA+TGG | - | chr8.3:31008474-31008493 | MS.gene067979:CDS | 30.0% |
AATCTTGTAGTATCTTGGCA+TGG | - | chr8.3:31008785-31008804 | MS.gene067979:CDS | 35.0% | |
AGAGTGCATGTGATTGTTAA+TGG | - | chr8.3:31009019-31009038 | MS.gene067979:CDS | 35.0% | |
AGATTCCTAGCTACATAATG+AGG | + | chr8.3:31008761-31008780 | None:intergenic | 35.0% | |
AGGAATGCAAGTTTAGTACT+TGG | - | chr8.3:31009112-31009131 | MS.gene067979:CDS | 35.0% | |
AGTACTAAACTTGCATTCCT+TGG | + | chr8.3:31009112-31009131 | None:intergenic | 35.0% | |
ATAGTTGTGGTGATATGCTA+AGG | - | chr8.3:31008972-31008991 | MS.gene067979:CDS | 35.0% | |
CAAGGGTAGATACAAAATGT+AGG | + | chr8.3:31009652-31009671 | None:intergenic | 35.0% | |
GAACCAAAATTGGAATTCCA+AGG | - | chr8.3:31009092-31009111 | MS.gene067979:CDS | 35.0% | |
GAATATGCTTCATGAAGCAA+AGG | + | chr8.3:31009172-31009191 | None:intergenic | 35.0% | |
GGTTTCAACAATAGCTTACA+AGG | - | chr8.3:31008881-31008900 | MS.gene067979:CDS | 35.0% | |
GTGGAGATACAATAAAGCAT+TGG | - | chr8.3:31008670-31008689 | MS.gene067979:CDS | 35.0% | |
TAGTTGTGGTGATATGCTAA+GGG | - | chr8.3:31008973-31008992 | MS.gene067979:CDS | 35.0% | |
TCAAGGTTTCCAAGCATTAA+AGG | - | chr8.3:31009424-31009443 | MS.gene067979:CDS | 35.0% | |
TGCTTCATGAAGCATATTCA+AGG | - | chr8.3:31009173-31009192 | MS.gene067979:CDS | 35.0% | |
TGTAAGCTATTGTTGAAACC+AGG | + | chr8.3:31008881-31008900 | None:intergenic | 35.0% | |
TTGATCCTAGAACAAGAACT+TGG | + | chr8.3:31009279-31009298 | None:intergenic | 35.0% | |
TTGTTGAAACCAGGTGAAAT+AGG | + | chr8.3:31008872-31008891 | None:intergenic | 35.0% | |
TTTGGAGAAGATGCTGAATT+GGG | - | chr8.3:31009058-31009077 | MS.gene067979:CDS | 35.0% | |
! | GAGAAAACAGCAATTTTGAG+AGG | + | chr8.3:31008467-31008486 | None:intergenic | 35.0% |
! | GGGAGATTAGTTAAAGACAA+AGG | - | chr8.3:31009142-31009161 | MS.gene067979:CDS | 35.0% |
! | GTTGCTATTAGTGATAGTTG+TGG | - | chr8.3:31008959-31008978 | MS.gene067979:CDS | 35.0% |
! | TTCTCTAGAAAATGGCCTAT+TGG | - | chr8.3:31008482-31008501 | MS.gene067979:CDS | 35.0% |
!! | CTTACAAGGTGTTATTCCTA+AGG | - | chr8.3:31008895-31008914 | MS.gene067979:CDS | 35.0% |
!! | TATTTGATAGTTGCTGGTTC+TGG | - | chr8.3:31009220-31009239 | MS.gene067979:CDS | 35.0% |
!!! | CTTTTGGTTGATGATGAGTA+TGG | - | chr8.3:31009451-31009470 | MS.gene067979:CDS | 35.0% |
!!! | TGACCAAGTTTTGGATTGTT+GGG | + | chr8.3:31008375-31008394 | None:intergenic | 35.0% |
AAAGTAAGATCAAGCCCTTG+AGG | + | chr8.3:31009367-31009386 | None:intergenic | 40.0% | |
AGATGGCATTAGCATATGAG+AGG | - | chr8.3:31009605-31009624 | MS.gene067979:CDS | 40.0% | |
AGGGCTTGATCTTACTTTGA+TGG | - | chr8.3:31009369-31009388 | MS.gene067979:CDS | 40.0% | |
ATCACATGCACTCTTCTTGT+AGG | + | chr8.3:31009013-31009032 | None:intergenic | 40.0% | |
CAACAATCCAAAACTTGGTC+AGG | - | chr8.3:31008374-31008393 | MS.gene067979:CDS | 40.0% | |
CACTTCCTCATTATGTAGCT+AGG | - | chr8.3:31008753-31008772 | MS.gene067979:CDS | 40.0% | |
CGGATTCACCTTCATGAAAA+TGG | + | chr8.3:31008646-31008665 | None:intergenic | 40.0% | |
CTTCCCAACAATCCAAAACT+TGG | - | chr8.3:31008369-31008388 | MS.gene067979:CDS | 40.0% | |
CTTGAAGCAGTGGTAAAAGA+TGG | - | chr8.3:31009514-31009533 | MS.gene067979:CDS | 40.0% | |
GCACTCTTCTTGTAGGAATT+TGG | + | chr8.3:31009006-31009025 | None:intergenic | 40.0% | |
GCTTGATCTTACTTTGATGG+AGG | - | chr8.3:31009372-31009391 | MS.gene067979:CDS | 40.0% | |
GGAAACAGGTACAAGGATTT+AGG | - | chr8.3:31009250-31009269 | MS.gene067979:CDS | 40.0% | |
GGAAACCAAGTTCTTGTTCT+AGG | - | chr8.3:31009271-31009290 | MS.gene067979:CDS | 40.0% | |
GTGCAAATAGAAGTTGTGGT+GGG | + | chr8.3:31008341-31008360 | None:intergenic | 40.0% | |
GTTTGGAGAAGATGCTGAAT+TGG | - | chr8.3:31009057-31009076 | MS.gene067979:CDS | 40.0% | |
TAATGTAGAGTCCCTATTGG+AGG | - | chr8.3:31009489-31009508 | MS.gene067979:CDS | 40.0% | |
TCCAATAGGGACTCTACATT+AGG | + | chr8.3:31009490-31009509 | None:intergenic | 40.0% | |
TCCTAATGTAGAGTCCCTAT+TGG | - | chr8.3:31009486-31009505 | MS.gene067979:CDS | 40.0% | |
TGCAAATAGAAGTTGTGGTG+GGG | + | chr8.3:31008340-31008359 | None:intergenic | 40.0% | |
TTTGGATTGTTGGGAAGCAA+AGG | + | chr8.3:31008366-31008385 | None:intergenic | 40.0% | |
! | AAGATCACCTGACCAAGTTT+TGG | + | chr8.3:31008384-31008403 | None:intergenic | 40.0% |
!! | AGTTTAGTACTTGGTGTAGC+AGG | - | chr8.3:31009121-31009140 | MS.gene067979:CDS | 40.0% |
!! | GCAATTTTGAGAGGTGAAAG+TGG | + | chr8.3:31008458-31008477 | None:intergenic | 40.0% |
!! | GGTGTTGATGATGATGAGTT+TGG | - | chr8.3:31009040-31009059 | MS.gene067979:CDS | 40.0% |
!! | GTTTAGTACTTGGTGTAGCA+GGG | - | chr8.3:31009122-31009141 | MS.gene067979:CDS | 40.0% |
!!! | CTGACCAAGTTTTGGATTGT+TGG | + | chr8.3:31008376-31008395 | None:intergenic | 40.0% |
AATCCAACACTTAGGCCTCA+AGG | - | chr8.3:31009349-31009368 | MS.gene067979:CDS | 45.0% | |
ACATTGAGGCAGCATACTCA+CGG | + | chr8.3:31009573-31009592 | None:intergenic | 45.0% | |
ATCCAACACTTAGGCCTCAA+GGG | - | chr8.3:31009350-31009369 | MS.gene067979:CDS | 45.0% | |
ATGAAGGTGAATCCGACAAG+TGG | - | chr8.3:31008651-31008670 | MS.gene067979:CDS | 45.0% | |
CCAGGTGAAATAGGTTCATC+AGG | + | chr8.3:31008863-31008882 | None:intergenic | 45.0% | |
CCTGATGAACCTATTTCACC+TGG | - | chr8.3:31008860-31008879 | MS.gene067979:CDS | 45.0% | |
CTCTTTGAGCTAAAGCAGTG+TGG | + | chr8.3:31008547-31008566 | None:intergenic | 45.0% | |
GAGAAGATGCTGAATTGGGA+AGG | - | chr8.3:31009062-31009081 | MS.gene067979:CDS | 45.0% | |
GCAAATAGAAGTTGTGGTGG+GGG | + | chr8.3:31008339-31008358 | None:intergenic | 45.0% | |
GGAAACCTTGATGCCAAAAG+AGG | + | chr8.3:31009415-31009434 | None:intergenic | 45.0% | |
GGTGCAAATAGAAGTTGTGG+TGG | + | chr8.3:31008342-31008361 | None:intergenic | 45.0% | |
GGTGGTGCAAATAGAAGTTG+TGG | + | chr8.3:31008345-31008364 | None:intergenic | 45.0% | |
GTGTGGAGAAGAAAAAGAGC+TGG | + | chr8.3:31008317-31008336 | None:intergenic | 45.0% | |
TGATGGAGGCTATGATGAGT+GGG | - | chr8.3:31009386-31009405 | MS.gene067979:CDS | 45.0% | |
TGCTTCAAGTGCCTCCAATA+GGG | + | chr8.3:31009503-31009522 | None:intergenic | 45.0% | |
TGGTAAAAGATGGACCACAG+AGG | - | chr8.3:31009524-31009543 | MS.gene067979:CDS | 45.0% | |
TTGAGCTAAAGCAGTGTGGA+GGG | + | chr8.3:31008543-31008562 | None:intergenic | 45.0% | |
TTGATGGAGGCTATGATGAG+TGG | - | chr8.3:31009385-31009404 | MS.gene067979:CDS | 45.0% | |
TTTGAGCTAAAGCAGTGTGG+AGG | + | chr8.3:31008544-31008563 | None:intergenic | 45.0% | |
! | CACACTGCTTTAGCTCAAAG+AGG | - | chr8.3:31008545-31008564 | MS.gene067979:CDS | 45.0% |
! | TGAAGGGGAGTTTGGTTTCT+TGG | + | chr8.3:31008246-31008265 | None:intergenic | 45.0% |
ACCATGGGGAAACAGGTACA+AGG | - | chr8.3:31009243-31009262 | MS.gene067979:CDS | 50.0% | |
CTGCTTCAAGTGCCTCCAAT+AGG | + | chr8.3:31009504-31009523 | None:intergenic | 50.0% | |
GGATTGTTGGGAAGCAAAGG+TGG | + | chr8.3:31008363-31008382 | None:intergenic | 50.0% | |
TCCTTGTACCTGTTTCCCCA+TGG | + | chr8.3:31009247-31009266 | None:intergenic | 50.0% | |
! | GATGAGTGGGAAGCCTCTTT+TGG | - | chr8.3:31009399-31009418 | MS.gene067979:CDS | 50.0% |
! | GGAAGCCTCTTTTGGCATCA+AGG | - | chr8.3:31009407-31009426 | MS.gene067979:CDS | 50.0% |
!! | AGTTGCTGGTTCTGGACCAT+GGG | - | chr8.3:31009228-31009247 | MS.gene067979:CDS | 50.0% |
!! | ATTGGAGGCACTTGAAGCAG+TGG | - | chr8.3:31009504-31009523 | MS.gene067979:CDS | 50.0% |
!! | TAGTTGCTGGTTCTGGACCA+TGG | - | chr8.3:31009227-31009246 | MS.gene067979:CDS | 50.0% |
AGCCCTTGAGGCCTAAGTGT+TGG | + | chr8.3:31009355-31009374 | None:intergenic | 55.0% | |
ATGGACCACAGAGGCTAGCA+AGG | - | chr8.3:31009533-31009552 | MS.gene067979:CDS | 55.0% | |
GAGGCTAGCAAGGAGAGGAA+AGG | - | chr8.3:31009543-31009562 | MS.gene067979:CDS | 55.0% | |
! | CAGTGTGGAGGGTGTAAGCA+TGG | + | chr8.3:31008532-31008551 | None:intergenic | 55.0% |
! | GTTCTGGACCATGGGGAAAC+AGG | - | chr8.3:31009236-31009255 | MS.gene067979:CDS | 55.0% |
! | TAGAAGTTGTGGTGGGGGTG+TGG | + | chr8.3:31008334-31008353 | None:intergenic | 55.0% |
!! | GTTGCTGGTTCTGGACCATG+GGG | - | chr8.3:31009229-31009248 | MS.gene067979:CDS | 55.0% |
ATGGCGTTCCATGCCACCTG+GGG | + | chr8.3:31008513-31008532 | None:intergenic | 60.0% | |
CATGGCGTTCCATGCCACCT+GGG | + | chr8.3:31008514-31008533 | None:intergenic | 60.0% | |
CCACAGAGGCTAGCAAGGAG+AGG | - | chr8.3:31009538-31009557 | MS.gene067979:CDS | 60.0% | |
CCACCTGGGGTGGTACCAAT+AGG | + | chr8.3:31008500-31008519 | None:intergenic | 60.0% | |
CCTATTGGTACCACCCCAGG+TGG | - | chr8.3:31008497-31008516 | MS.gene067979:CDS | 60.0% | |
TGGCCTATTGGTACCACCCC+AGG | - | chr8.3:31008494-31008513 | MS.gene067979:CDS | 60.0% | |
! | CCTCTCCTTGCTAGCCTCTG+TGG | + | chr8.3:31009541-31009560 | None:intergenic | 60.0% |
GCATGGCGTTCCATGCCACC+TGG | + | chr8.3:31008515-31008534 | None:intergenic | 65.0% | |
TGGTACCACCCCAGGTGGCA+TGG | - | chr8.3:31008502-31008521 | MS.gene067979:CDS | 65.0% | |
GCGTTCCATGCCACCTGGGG+TGG | + | chr8.3:31008510-31008529 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 31008221 | 31009672 | 31008221 | ID=MS.gene067979 |
chr8.3 | mRNA | 31008221 | 31009672 | 31008221 | ID=MS.gene067979.t1;Parent=MS.gene067979 |
chr8.3 | exon | 31008221 | 31009672 | 31008221 | ID=MS.gene067979.t1.exon1;Parent=MS.gene067979.t1 |
chr8.3 | CDS | 31008221 | 31009672 | 31008221 | ID=cds.MS.gene067979.t1;Parent=MS.gene067979.t1 |
Gene Sequence |
Protein sequence |