Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59273.t1 | XP_003619561.1 | 93.1 | 203 | 12 | 1 | 1 | 201 | 1 | 203 | 3.40E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59273.t1 | O82711 | 46.1 | 206 | 94 | 8 | 6 | 197 | 7 | 209 | 1.2e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59273.t1 | G7KMH6 | 93.1 | 203 | 12 | 1 | 1 | 201 | 1 | 203 | 2.5e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene59273 | -0.837028 | 6.62E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene59273 | -0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene049483 | MS.gene59273 | 0.801452 | 8.94E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene59273 | 0.819634 | 1.05E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene59273 | -0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene050353 | MS.gene59273 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene050354 | MS.gene59273 | 0.847467 | 1.14E-59 | -1.69E-46 |
| MS.gene050380 | MS.gene59273 | 0.891919 | 2.56E-74 | -1.69E-46 |
| MS.gene050381 | MS.gene59273 | 0.888269 | 6.86E-73 | -1.69E-46 |
| MS.gene050504 | MS.gene59273 | -0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene050800 | MS.gene59273 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene59273 | -0.817111 | 3.91E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene59273 | -0.818848 | 1.58E-52 | -1.69E-46 |
| MS.gene050926 | MS.gene59273 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene050937 | MS.gene59273 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene59273 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene051113 | MS.gene59273 | 0.822383 | 2.44E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene59273 | 0.801398 | 9.17E-49 | -1.69E-46 |
| MS.gene05141 | MS.gene59273 | 0.869248 | 3.57E-66 | -1.69E-46 |
| MS.gene051694 | MS.gene59273 | -0.839558 | 1.47E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene59273 | -0.810156 | 1.33E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene59273 | 0.850425 | 1.71E-60 | -1.69E-46 |
| MS.gene05234 | MS.gene59273 | 0.833314 | 5.73E-56 | -1.69E-46 |
| MS.gene053018 | MS.gene59273 | -0.818852 | 1.58E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene59273 | 0.831377 | 1.73E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene59273 | 0.8445 | 7.28E-59 | -1.69E-46 |
| MS.gene053562 | MS.gene59273 | 0.80419 | 2.43E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene59273 | -0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene59273 | -0.833365 | 5.56E-56 | -1.69E-46 |
| MS.gene054435 | MS.gene59273 | 0.806334 | 8.65E-50 | -1.69E-46 |
| MS.gene054437 | MS.gene59273 | 0.805282 | 1.44E-49 | -1.69E-46 |
| MS.gene054447 | MS.gene59273 | 0.800184 | 1.62E-48 | -1.69E-46 |
| MS.gene054595 | MS.gene59273 | -0.83122 | 1.89E-55 | -1.69E-46 |
| MS.gene054616 | MS.gene59273 | 0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene054707 | MS.gene59273 | 0.806866 | 6.68E-50 | -1.69E-46 |
| MS.gene054708 | MS.gene59273 | 0.82814 | 1.06E-54 | -1.69E-46 |
| MS.gene055124 | MS.gene59273 | 0.847178 | 1.36E-59 | -1.69E-46 |
| MS.gene055139 | MS.gene59273 | 0.800847 | 1.19E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene59273 | 0.842083 | 3.21E-58 | -1.69E-46 |
| MS.gene055202 | MS.gene59273 | 0.844812 | 5.99E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene59273 | -0.81859 | 1.81E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene59273 | -0.803056 | 4.18E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene59273 | 0.8089 | 2.47E-50 | -1.69E-46 |
| MS.gene056311 | MS.gene59273 | 0.810725 | 9.99E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene59273 | 0.858052 | 1.07E-62 | -1.69E-46 |
| MS.gene056448 | MS.gene59273 | -0.814155 | 1.78E-51 | -1.69E-46 |
| MS.gene056942 | MS.gene59273 | -0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene057014 | MS.gene59273 | 0.838609 | 2.60E-57 | -1.69E-46 |
| MS.gene057173 | MS.gene59273 | 0.819978 | 8.74E-53 | -1.69E-46 |
| MS.gene058093 | MS.gene59273 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene59273 | -0.810345 | 1.21E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene59273 | 0.824444 | 8.04E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene59273 | 0.812414 | 4.29E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene59273 | 0.824015 | 1.01E-53 | -1.69E-46 |
| MS.gene058179 | MS.gene59273 | 0.815685 | 8.14E-52 | -1.69E-46 |
| MS.gene058183 | MS.gene59273 | -0.805063 | 1.60E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene59273 | -0.812094 | 5.04E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene59273 | -0.800171 | 1.63E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene59273 | 0.864967 | 8.30E-65 | -1.69E-46 |
| MS.gene059022 | MS.gene59273 | -0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene59273 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene59273 | 0.817048 | 4.04E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene59273 | -0.82365 | 1.24E-53 | -1.69E-46 |
| MS.gene059368 | MS.gene59273 | -0.808149 | 3.57E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene59273 | -0.816594 | 5.10E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene59273 | -0.812604 | 3.90E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene59273 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene59273 | 0.815169 | 1.06E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene59273 | -0.85897 | 5.71E-63 | -1.69E-46 |
| MS.gene060578 | MS.gene59273 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene59273 | 0.865852 | 4.37E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59273.t1 | MTR_6g059530 | 93.103 | 203 | 12 | 1 | 1 | 201 | 1 | 203 | 1.39e-125 | 352 |
| MS.gene59273.t1 | MTR_6g059410 | 92.118 | 203 | 13 | 2 | 1 | 201 | 1 | 202 | 2.18e-123 | 347 |
| MS.gene59273.t1 | MTR_6g059650 | 55.155 | 194 | 77 | 5 | 17 | 201 | 19 | 211 | 4.22e-65 | 199 |
| MS.gene59273.t1 | MTR_6g065460 | 53.398 | 206 | 81 | 7 | 1 | 193 | 1 | 204 | 2.57e-55 | 174 |
| MS.gene59273.t1 | MTR_6g059760 | 47.847 | 209 | 92 | 11 | 1 | 196 | 1 | 205 | 1.86e-47 | 155 |
| MS.gene59273.t1 | MTR_6g065460 | 48.756 | 201 | 74 | 6 | 1 | 193 | 1 | 180 | 3.28e-45 | 148 |
| MS.gene59273.t1 | MTR_6g059680 | 47.525 | 202 | 87 | 8 | 16 | 201 | 18 | 216 | 7.85e-42 | 140 |
| MS.gene59273.t1 | MTR_6g044780 | 41.860 | 215 | 106 | 10 | 1 | 199 | 1 | 212 | 2.45e-40 | 137 |
| MS.gene59273.t1 | MTR_3g463590 | 43.617 | 188 | 93 | 7 | 24 | 201 | 27 | 211 | 9.99e-40 | 135 |
| MS.gene59273.t1 | MTR_6g045097 | 40.930 | 215 | 108 | 10 | 1 | 199 | 1 | 212 | 3.10e-38 | 132 |
| MS.gene59273.t1 | MTR_6g044810 | 40.930 | 215 | 108 | 10 | 1 | 199 | 1 | 212 | 2.94e-37 | 129 |
| MS.gene59273.t1 | MTR_6g059730 | 44.186 | 215 | 103 | 9 | 1 | 201 | 1 | 212 | 8.93e-37 | 127 |
| MS.gene59273.t1 | MTR_6g045403 | 40.187 | 214 | 109 | 9 | 1 | 199 | 1 | 210 | 2.39e-35 | 124 |
| MS.gene59273.t1 | MTR_6g017225 | 40.187 | 214 | 106 | 11 | 6 | 201 | 7 | 216 | 7.72e-35 | 126 |
| MS.gene59273.t1 | MTR_6g009650 | 42.079 | 202 | 99 | 8 | 6 | 194 | 7 | 203 | 8.33e-35 | 122 |
| MS.gene59273.t1 | MTR_6g066190 | 39.409 | 203 | 105 | 8 | 6 | 195 | 7 | 204 | 1.23e-32 | 117 |
| MS.gene59273.t1 | MTR_6g009563 | 40.796 | 201 | 102 | 8 | 6 | 194 | 9 | 204 | 2.87e-32 | 115 |
| MS.gene59273.t1 | MTR_6g045433 | 35.931 | 231 | 106 | 11 | 1 | 201 | 1 | 219 | 6.67e-31 | 112 |
| MS.gene59273.t1 | MTR_6g066210 | 38.679 | 212 | 115 | 8 | 1 | 199 | 1 | 210 | 3.34e-29 | 108 |
| MS.gene59273.t1 | MTR_6g059810 | 38.647 | 207 | 101 | 10 | 4 | 190 | 8 | 208 | 4.97e-29 | 107 |
| MS.gene59273.t1 | MTR_1g035770 | 39.320 | 206 | 103 | 10 | 6 | 192 | 7 | 209 | 3.23e-26 | 100 |
| MS.gene59273.t1 | MTR_6g059755 | 49.074 | 108 | 49 | 4 | 98 | 199 | 18 | 125 | 4.64e-26 | 97.8 |
| MS.gene59273.t1 | MTR_6g078070 | 34.146 | 205 | 121 | 9 | 1 | 193 | 1 | 203 | 1.16e-21 | 88.2 |
| MS.gene59273.t1 | MTR_6g078100 | 33.654 | 208 | 120 | 9 | 1 | 193 | 1 | 205 | 4.76e-20 | 84.0 |
| MS.gene59273.t1 | MTR_1g057110 | 36.538 | 208 | 97 | 13 | 1 | 194 | 1 | 187 | 4.51e-17 | 75.9 |
| MS.gene59273.t1 | MTR_6g065570 | 53.333 | 60 | 25 | 1 | 16 | 72 | 14 | 73 | 1.56e-15 | 69.3 |
| MS.gene59273.t1 | MTR_0100s0150 | 26.471 | 204 | 120 | 8 | 7 | 190 | 5 | 198 | 6.55e-14 | 67.8 |
| MS.gene59273.t1 | MTR_0084s0030 | 28.283 | 198 | 125 | 8 | 7 | 190 | 5 | 199 | 6.52e-13 | 65.1 |
| MS.gene59273.t1 | MTR_3g106620 | 31.492 | 181 | 107 | 9 | 24 | 194 | 27 | 200 | 1.04e-12 | 64.7 |
| MS.gene59273.t1 | MTR_0211s0080 | 27.320 | 194 | 128 | 7 | 7 | 190 | 5 | 195 | 2.95e-12 | 63.2 |
| MS.gene59273.t1 | MTR_6g078290 | 30.233 | 215 | 119 | 11 | 1 | 190 | 1 | 209 | 4.51e-12 | 62.8 |
| MS.gene59273.t1 | MTR_0302s0030 | 25.854 | 205 | 121 | 8 | 7 | 190 | 5 | 199 | 7.18e-12 | 62.0 |
| MS.gene59273.t1 | MTR_2g073010 | 28.431 | 204 | 124 | 8 | 1 | 193 | 6 | 198 | 4.19e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59273.t1 | AT1G73260 | 35.326 | 184 | 105 | 7 | 25 | 197 | 29 | 209 | 3.18e-22 | 90.1 |
| MS.gene59273.t1 | AT1G17860 | 30.882 | 204 | 121 | 9 | 1 | 193 | 1 | 195 | 1.22e-16 | 75.1 |
Find 54 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAGTAATGTTGACTTCA+TGG | 0.276702 | 6.4:-44658982 | None:intergenic |
| CAACTGAAAATGATCCCTTT+AGG | 0.293355 | 6.4:+44659522 | MS.gene59273:CDS |
| AACTGAAAATGATCCCTTTA+GGG | 0.300397 | 6.4:+44659523 | MS.gene59273:CDS |
| GAAACAGTTGAAGACATAAA+TGG | 0.316517 | 6.4:+44659053 | MS.gene59273:CDS |
| AAATCTTGTAGAACAGTAAC+TGG | 0.355500 | 6.4:-44659176 | None:intergenic |
| ACTGTTTCAGTAAAAGCTAA+TGG | 0.364363 | 6.4:-44659038 | None:intergenic |
| CCTGGTGCTTGTAGTGATAT+TGG | 0.364762 | 6.4:+44659464 | MS.gene59273:CDS |
| CCTACATCTTGGGTAGGTAT+TGG | 0.367664 | 6.4:+44659347 | MS.gene59273:CDS |
| AATGGAAACCCCGTATTTCC+TGG | 0.375075 | 6.4:+44659071 | MS.gene59273:CDS |
| ACTCGTATGATAAATCTAAC+TGG | 0.385923 | 6.4:-44659221 | None:intergenic |
| AAAATTGAGACACTTGGTTC+AGG | 0.392743 | 6.4:+44659401 | MS.gene59273:CDS |
| GATAATATTGACGCATTTGA+AGG | 0.419997 | 6.4:+44659371 | MS.gene59273:CDS |
| ATGATGATTTCCCTACATCT+TGG | 0.421230 | 6.4:+44659336 | MS.gene59273:CDS |
| CTGGTGCTTGTAGTGATATT+GGG | 0.426790 | 6.4:+44659465 | MS.gene59273:CDS |
| AGTAGGTAAAGGAGAGGAGG+AGG | 0.443614 | 6.4:-44659013 | None:intergenic |
| TGATGATTTCCCTACATCTT+GGG | 0.444534 | 6.4:+44659337 | MS.gene59273:CDS |
| TCAACAAATACAACCCTAAA+GGG | 0.446150 | 6.4:-44659536 | None:intergenic |
| GTATTTGCTACCAGGAAATA+CGG | 0.450228 | 6.4:-44659081 | None:intergenic |
| CCAATACCTACCCAAGATGT+AGG | 0.454772 | 6.4:-44659347 | None:intergenic |
| TATTTGCTACCAGGAAATAC+GGG | 0.456020 | 6.4:-44659080 | None:intergenic |
| AGATGAGAATGGATGGCGTT+TGG | 0.471954 | 6.4:+44659496 | MS.gene59273:CDS |
| ATCATGAGCTAGCACCCATT+TGG | 0.477611 | 6.4:-44659318 | None:intergenic |
| GGAGAGGAGGAGGAGAGAAA+AGG | 0.484460 | 6.4:-44659003 | None:intergenic |
| ATCAACAAATACAACCCTAA+AGG | 0.485036 | 6.4:-44659537 | None:intergenic |
| AGTAAAAGCTAATGGAAAGT+AGG | 0.489860 | 6.4:-44659030 | None:intergenic |
| TGGAGATTTGATTCAAACTA+CGG | 0.490153 | 6.4:-44659579 | None:intergenic |
| GGATTAAAGCTTGGTAAGAC+AGG | 0.490806 | 6.4:+44659140 | MS.gene59273:CDS |
| AGCTAATGGAAAGTAGGTAA+AGG | 0.506699 | 6.4:-44659024 | None:intergenic |
| ATGTCTAAAGGAGGAGGTGG+TGG | 0.513667 | 6.4:+44659119 | MS.gene59273:CDS |
| GGAGGTGGTGGATTAAAGCT+TGG | 0.515566 | 6.4:+44659131 | MS.gene59273:CDS |
| GGGAGGTATAGAGATGAGAA+TGG | 0.518670 | 6.4:+44659485 | MS.gene59273:CDS |
| CCTCCTCCTTTAGACATAAG+TGG | 0.521949 | 6.4:-44659113 | None:intergenic |
| GTGTGCTGAATCTGCCAAAT+GGG | 0.523391 | 6.4:+44659304 | MS.gene59273:CDS |
| CCAAGGTTCAGTGCTCCACC+TGG | 0.525036 | 6.4:+44659446 | MS.gene59273:CDS |
| AGTGTGCTGAATCTGCCAAA+TGG | 0.527935 | 6.4:+44659303 | MS.gene59273:CDS |
| TTGGCAGATTCAGCACACTT+TGG | 0.530934 | 6.4:-44659299 | None:intergenic |
| ATTGCACCACTTATGTCTAA+AGG | 0.535923 | 6.4:+44659107 | MS.gene59273:CDS |
| CCAGGTGGAGCACTGAACCT+TGG | 0.547779 | 6.4:-44659446 | None:intergenic |
| CAATACCTACCCAAGATGTA+GGG | 0.570789 | 6.4:-44659346 | None:intergenic |
| ACAAGCTTGTGTATTGTCCA+AGG | 0.573799 | 6.4:+44659429 | MS.gene59273:CDS |
| GAAAGTAGGTAAAGGAGAGG+AGG | 0.576222 | 6.4:-44659016 | None:intergenic |
| CTTATGTCTAAAGGAGGAGG+TGG | 0.581977 | 6.4:+44659116 | MS.gene59273:CDS |
| CCACTTATGTCTAAAGGAGG+AGG | 0.587624 | 6.4:+44659113 | MS.gene59273:CDS |
| TCGTTTAAAATTGAGACACT+TGG | 0.590571 | 6.4:+44659395 | MS.gene59273:CDS |
| GATTTCCCTACATCTTGGGT+AGG | 0.592043 | 6.4:+44659341 | MS.gene59273:CDS |
| GGTATAGAGATGAGAATGGA+TGG | 0.592483 | 6.4:+44659489 | MS.gene59273:CDS |
| GCAATATAGTATTTGCTACC+AGG | 0.595672 | 6.4:-44659089 | None:intergenic |
| ATGGAAAGTAGGTAAAGGAG+AGG | 0.609367 | 6.4:-44659019 | None:intergenic |
| CCAATATCACTACAAGCACC+AGG | 0.612889 | 6.4:-44659464 | None:intergenic |
| GCACCACTTATGTCTAAAGG+AGG | 0.661209 | 6.4:+44659110 | MS.gene59273:CDS |
| ATTTGCTACCAGGAAATACG+GGG | 0.675453 | 6.4:-44659079 | None:intergenic |
| GTGCTTGTAGTGATATTGGG+AGG | 0.713327 | 6.4:+44659468 | MS.gene59273:CDS |
| ATATCACTACAAGCACCAGG+TGG | 0.748505 | 6.4:-44659461 | None:intergenic |
| TTTATCATACGAGTAAAACG+TGG | 0.798123 | 6.4:+44659230 | MS.gene59273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTCTACAAGATTTTAATG+AGG | + | chr6.4:44659184-44659203 | MS.gene59273:CDS | 25.0% |
| AAATCTTGTAGAACAGTAAC+TGG | - | chr6.4:44659179-44659198 | None:intergenic | 30.0% | |
| AACTGAAAATGATCCCTTTA+GGG | + | chr6.4:44659523-44659542 | MS.gene59273:CDS | 30.0% | |
| ACTCGTATGATAAATCTAAC+TGG | - | chr6.4:44659224-44659243 | None:intergenic | 30.0% | |
| ACTGTTTCAGTAAAAGCTAA+TGG | - | chr6.4:44659041-44659060 | None:intergenic | 30.0% | |
| AGTAAAAGCTAATGGAAAGT+AGG | - | chr6.4:44659033-44659052 | None:intergenic | 30.0% | |
| ATCAACAAATACAACCCTAA+AGG | - | chr6.4:44659540-44659559 | None:intergenic | 30.0% | |
| GAAACAGTTGAAGACATAAA+TGG | + | chr6.4:44659053-44659072 | MS.gene59273:CDS | 30.0% | |
| GATAATATTGACGCATTTGA+AGG | + | chr6.4:44659371-44659390 | MS.gene59273:CDS | 30.0% | |
| TCAACAAATACAACCCTAAA+GGG | - | chr6.4:44659539-44659558 | None:intergenic | 30.0% | |
| TTTATCATACGAGTAAAACG+TGG | + | chr6.4:44659230-44659249 | MS.gene59273:CDS | 30.0% | |
| ! | TAAAGGGATCATTTTCAGTT+GGG | - | chr6.4:44659523-44659542 | None:intergenic | 30.0% |
| ! | TCGTTTAAAATTGAGACACT+TGG | + | chr6.4:44659395-44659414 | MS.gene59273:CDS | 30.0% |
| !! | GATTTTAATGAGGTTGTTAG+AGG | + | chr6.4:44659194-44659213 | MS.gene59273:CDS | 30.0% |
| AAAATTGAGACACTTGGTTC+AGG | + | chr6.4:44659401-44659420 | MS.gene59273:CDS | 35.0% | |
| AGCTAATGGAAAGTAGGTAA+AGG | - | chr6.4:44659027-44659046 | None:intergenic | 35.0% | |
| ATGATGATTTCCCTACATCT+TGG | + | chr6.4:44659336-44659355 | MS.gene59273:CDS | 35.0% | |
| ATTGCACCACTTATGTCTAA+AGG | + | chr6.4:44659107-44659126 | MS.gene59273:CDS | 35.0% | |
| CAACTGAAAATGATCCCTTT+AGG | + | chr6.4:44659522-44659541 | MS.gene59273:CDS | 35.0% | |
| TGATGATTTCCCTACATCTT+GGG | + | chr6.4:44659337-44659356 | MS.gene59273:CDS | 35.0% | |
| ! | CTAAAGGGATCATTTTCAGT+TGG | - | chr6.4:44659524-44659543 | None:intergenic | 35.0% |
| ! | GCAATATAGTATTTGCTACC+AGG | - | chr6.4:44659092-44659111 | None:intergenic | 35.0% |
| ! | GTATTTGCTACCAGGAAATA+CGG | - | chr6.4:44659084-44659103 | None:intergenic | 35.0% |
| ! | TATTTGCTACCAGGAAATAC+GGG | - | chr6.4:44659083-44659102 | None:intergenic | 35.0% |
| ACAAGCTTGTGTATTGTCCA+AGG | + | chr6.4:44659429-44659448 | MS.gene59273:CDS | 40.0% | |
| ATGGAAAGTAGGTAAAGGAG+AGG | - | chr6.4:44659022-44659041 | None:intergenic | 40.0% | |
| CAATACCTACCCAAGATGTA+GGG | - | chr6.4:44659349-44659368 | None:intergenic | 40.0% | |
| CTGGTGCTTGTAGTGATATT+GGG | + | chr6.4:44659465-44659484 | MS.gene59273:CDS | 40.0% | |
| GGATTAAAGCTTGGTAAGAC+AGG | + | chr6.4:44659140-44659159 | MS.gene59273:CDS | 40.0% | |
| GGTATAGAGATGAGAATGGA+TGG | + | chr6.4:44659489-44659508 | MS.gene59273:CDS | 40.0% | |
| ! | ATTTGCTACCAGGAAATACG+GGG | - | chr6.4:44659082-44659101 | None:intergenic | 40.0% |
| AATGGAAACCCCGTATTTCC+TGG | + | chr6.4:44659071-44659090 | MS.gene59273:CDS | 45.0% | |
| AGATGAGAATGGATGGCGTT+TGG | + | chr6.4:44659496-44659515 | MS.gene59273:CDS | 45.0% | |
| AGTGTGCTGAATCTGCCAAA+TGG | + | chr6.4:44659303-44659322 | MS.gene59273:CDS | 45.0% | |
| ATATCACTACAAGCACCAGG+TGG | - | chr6.4:44659464-44659483 | None:intergenic | 45.0% | |
| ATCATGAGCTAGCACCCATT+TGG | - | chr6.4:44659321-44659340 | None:intergenic | 45.0% | |
| CCAATACCTACCCAAGATGT+AGG | - | chr6.4:44659350-44659369 | None:intergenic | 45.0% | |
| CCAATATCACTACAAGCACC+AGG | - | chr6.4:44659467-44659486 | None:intergenic | 45.0% | |
| CCACTTATGTCTAAAGGAGG+AGG | + | chr6.4:44659113-44659132 | MS.gene59273:CDS | 45.0% | |
| CCTACATCTTGGGTAGGTAT+TGG | + | chr6.4:44659347-44659366 | MS.gene59273:CDS | 45.0% | |
| CCTCCTCCTTTAGACATAAG+TGG | - | chr6.4:44659116-44659135 | None:intergenic | 45.0% | |
| CCTGGTGCTTGTAGTGATAT+TGG | + | chr6.4:44659464-44659483 | MS.gene59273:CDS | 45.0% | |
| CTTATGTCTAAAGGAGGAGG+TGG | + | chr6.4:44659116-44659135 | MS.gene59273:CDS | 45.0% | |
| GAAAGTAGGTAAAGGAGAGG+AGG | - | chr6.4:44659019-44659038 | None:intergenic | 45.0% | |
| GATTTCCCTACATCTTGGGT+AGG | + | chr6.4:44659341-44659360 | MS.gene59273:CDS | 45.0% | |
| GCACCACTTATGTCTAAAGG+AGG | + | chr6.4:44659110-44659129 | MS.gene59273:CDS | 45.0% | |
| GTGCTTGTAGTGATATTGGG+AGG | + | chr6.4:44659468-44659487 | MS.gene59273:CDS | 45.0% | |
| GTGTGCTGAATCTGCCAAAT+GGG | + | chr6.4:44659304-44659323 | MS.gene59273:CDS | 45.0% | |
| TTGGCAGATTCAGCACACTT+TGG | - | chr6.4:44659302-44659321 | None:intergenic | 45.0% | |
| ! | GGGAGGTATAGAGATGAGAA+TGG | + | chr6.4:44659485-44659504 | MS.gene59273:CDS | 45.0% |
| AGTAGGTAAAGGAGAGGAGG+AGG | - | chr6.4:44659016-44659035 | None:intergenic | 50.0% | |
| ATGTCTAAAGGAGGAGGTGG+TGG | + | chr6.4:44659119-44659138 | MS.gene59273:CDS | 50.0% | |
| !! | GGAGGTGGTGGATTAAAGCT+TGG | + | chr6.4:44659131-44659150 | MS.gene59273:CDS | 50.0% |
| GGAGAGGAGGAGGAGAGAAA+AGG | - | chr6.4:44659006-44659025 | None:intergenic | 55.0% | |
| CCAAGGTTCAGTGCTCCACC+TGG | + | chr6.4:44659446-44659465 | MS.gene59273:CDS | 60.0% | |
| !! | CCAGGTGGAGCACTGAACCT+TGG | - | chr6.4:44659449-44659468 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 44658984 | 44659589 | 44658984 | ID=MS.gene59273 |
| chr6.4 | mRNA | 44658984 | 44659589 | 44658984 | ID=MS.gene59273.t1;Parent=MS.gene59273 |
| chr6.4 | exon | 44658984 | 44659589 | 44658984 | ID=MS.gene59273.t1.exon1;Parent=MS.gene59273.t1 |
| chr6.4 | CDS | 44658984 | 44659589 | 44658984 | ID=cds.MS.gene59273.t1;Parent=MS.gene59273.t1 |
| Gene Sequence |
| Protein sequence |
