AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22484


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22484.t1 MTR_7g100410 94.472 199 7 1 1 199 1 195 3.70e-132 377
MS.gene22484.t1 MTR_7g100430 71.429 175 39 3 212 376 135 308 2.19e-75 245
MS.gene22484.t1 MTR_1g115575 59.302 172 59 3 215 376 146 316 7.88e-54 188
MS.gene22484.t1 MTR_4g062100 45.775 142 75 2 236 376 115 255 4.06e-26 110
MS.gene22484.t1 MTR_2g096190 45.714 140 74 2 236 374 111 249 2.51e-25 108
MS.gene22484.t1 MTR_7g117620 40.000 170 91 3 215 374 96 264 3.99e-23 101
MS.gene22484.t1 MTR_7g100390 38.255 149 90 2 237 384 95 242 6.98e-22 97.8
MS.gene22484.t1 MTR_1g032100 36.022 186 109 5 191 374 62 239 7.43e-20 92.0
MS.gene22484.t1 MTR_8g105260 41.007 139 80 2 237 374 109 246 2.09e-18 87.4
MS.gene22484.t1 MTR_1g040020 27.966 236 151 5 6 230 25 252 8.15e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22484.t1 AT3G09550 61.143 175 51 4 215 376 158 328 2.50e-57 198
MS.gene22484.t1 AT3G09550 61.143 175 51 4 215 376 158 328 2.50e-57 198
MS.gene22484.t1 AT3G09550 61.143 175 51 4 215 376 165 335 2.77e-57 198
MS.gene22484.t1 AT3G12360 55.814 172 65 3 215 376 132 302 6.35e-47 169
MS.gene22484.t1 AT3G12360 55.814 172 65 3 215 376 144 314 7.03e-47 169
MS.gene22484.t1 ATCG00810 57.143 126 54 0 79 204 8 133 1.18e-43 150
MS.gene22484.t1 AT5G60070 39.429 175 94 3 213 376 86 259 1.32e-25 108
MS.gene22484.t1 AT1G07710 47.143 140 72 2 236 374 111 249 2.76e-25 108
MS.gene22484.t1 AT1G07710 47.143 140 72 2 236 374 111 249 2.76e-25 108
MS.gene22484.t1 AT2G31820 38.172 186 100 4 213 388 202 382 4.08e-24 105
MS.gene22484.t1 AT2G01680 42.446 139 78 2 237 374 105 242 4.89e-22 98.6
MS.gene22484.t1 AT5G02620 39.744 156 91 3 237 390 102 256 1.54e-20 94.0
MS.gene22484.t1 AT5G02620 39.744 156 91 3 237 390 102 256 1.54e-20 94.0
MS.gene22484.t1 AT5G02620 39.744 156 91 3 237 390 102 256 1.54e-20 94.0
MS.gene22484.t1 AT5G02620 41.135 141 81 2 237 376 102 241 2.60e-20 93.2
MS.gene22484.t1 AT5G02620 41.135 141 81 2 237 376 102 241 2.60e-20 93.2
MS.gene22484.t1 AT1G05640 36.022 186 104 4 213 388 166 346 6.17e-20 92.4

Find 93 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAGGAGGAGGGTATTT+TGG 0.073604 7.1:+7981293 None:intergenic
CATATTACTATCACAGTTAA+AGG 0.160148 7.1:-7980698 MS.gene22484:CDS
AGGAGGAGGAGGAAGGTTAA+TGG 0.247161 7.1:+7981374 None:intergenic
GGCTTCTGCATACGATTTAT+TGG 0.255125 7.1:+7981015 None:intergenic
TACCTCTACCCTCTTCTTCC+TGG 0.277013 7.1:+7979296 None:intergenic
CGAAGAAACACTTATGATAT+TGG 0.304002 7.1:-7980915 MS.gene22484:CDS
CATATGTTTGCTCTCTTGTA+AGG 0.304310 7.1:+7979604 None:intergenic
TTGGGGAATTTGAGTAGGTT+GGG 0.330399 7.1:+7981312 None:intergenic
CTTAAGATTGTGTTCTCTGC+TGG 0.333514 7.1:-7980860 MS.gene22484:CDS
CACGTTTCCACTTCCCAATT+CGG 0.349688 7.1:-7981198 MS.gene22484:CDS
AGGACAATCTCCACTTTATA+TGG 0.355098 7.1:-7979427 MS.gene22484:CDS
GTAAAAGAGTACCTCCGAAT+TGG 0.389754 7.1:+7981184 None:intergenic
TTTGGGGAATTTGAGTAGGT+TGG 0.391038 7.1:+7981311 None:intergenic
GAGCTCAAGGTCGTGCTAAC+CGG 0.396084 7.1:-7980739 MS.gene22484:CDS
ATCATAAGTGTTTCTTCGTA+TGG 0.409872 7.1:+7980920 None:intergenic
TCCTCCTCCTCCTCTTTCAA+TGG 0.423505 7.1:-7981282 MS.gene22484:CDS
GACAAGTACGCTTTAGAATC+CGG 0.429131 7.1:+7980720 None:intergenic
TAAAAGAGTACCTCCGAATT+GGG 0.437692 7.1:+7981185 None:intergenic
ATGGAGTGCATTCTTTCCAT+TGG 0.444423 7.1:+7979533 None:intergenic
ATTTATACCTCGGTGACCTT+CGG 0.445387 7.1:+7980165 None:intergenic
ATTGAAATTGAGAAGAAAGT+AGG 0.452765 7.1:+7981340 None:intergenic
ATTGAAAGAGGAGGAGGAGG+AGG 0.454978 7.1:+7981284 None:intergenic
CCCATTGACCTCATTGAGAA+TGG 0.468668 7.1:+7980297 None:intergenic
AGAGAACACAATCTTAAGAA+TGG 0.469873 7.1:+7980865 None:intergenic
GCAAATGTCTTGATTAGCTC+TGG 0.471908 7.1:+7979657 None:intergenic
ATGGTTTCGCAGGCGCGATA+AGG 0.474508 7.1:+7980884 None:intergenic
GCAGTGTTTCGAAACTTGTC+AGG 0.474631 7.1:+7979336 None:intergenic
AGCTAATGCAAGCAATAACC+TGG 0.477152 7.1:-7980837 MS.gene22484:CDS
TGGGGAATTTGAGTAGGTTG+GGG 0.482666 7.1:+7981313 None:intergenic
GCCATTGAAAGAGGAGGAGG+AGG 0.483893 7.1:+7981281 None:intergenic
GAGGGAAATGCCATTGAAAG+AGG 0.491910 7.1:+7981272 None:intergenic
ATGCAGAAGCCGTTGCTGTA+GGG 0.502209 7.1:-7981003 MS.gene22484:CDS
ATCCTTGGCATGAAGCTGAA+TGG 0.503939 7.1:+7979514 None:intergenic
CAATGGCATTTCCCTCAAAA+CGG 0.507019 7.1:-7981265 MS.gene22484:CDS
AAGGATATGTTGATGTTGTC+AGG 0.508749 7.1:-7979497 MS.gene22484:CDS
CCTTTGACCGCCATATAAAG+TGG 0.509657 7.1:+7979417 None:intergenic
TCTTGATTAGCTCTGGATCA+TGG 0.513054 7.1:+7979664 None:intergenic
GCGGTGCAGATCAGGGTGGC+AGG 0.515912 7.1:+7978211 None:intergenic
AGGTTATCGCGAAGAGGAGG+AGG 0.521234 7.1:+7981360 None:intergenic
TTATCGCGAAGAGGAGGAGG+AGG 0.533368 7.1:+7981363 None:intergenic
TCTCTTTAGTAGCGTAAGGA+AGG 0.536080 7.1:+7980212 None:intergenic
AATCTTAAGAATGGTTTCGC+AGG 0.540497 7.1:+7980874 None:intergenic
TGACAACATCAACATATCCT+TGG 0.540841 7.1:+7979499 None:intergenic
AGAGTCATCGACACAATTCG+CGG 0.540964 7.1:-7980947 MS.gene22484:CDS
TATGCAGAAGCCGTTGCTGT+AGG 0.543396 7.1:-7981004 MS.gene22484:CDS
AGTACCTCCGAATTGGGAAG+TGG 0.543945 7.1:+7981191 None:intergenic
GCAGTCTCTTTAGTAGCGTA+AGG 0.547034 7.1:+7980208 None:intergenic
CTAGCTAATTCTAACTGACT+AGG 0.547684 7.1:+7979558 None:intergenic
TTAGAATTAGCTAGATCCAA+TGG 0.554133 7.1:-7979549 MS.gene22484:CDS
AACTTGATTTGCTTAAACCC+AGG 0.554926 7.1:+7980819 None:intergenic
CCACTTTATATGGCGGTCAA+AGG 0.557568 7.1:-7979417 MS.gene22484:CDS
CTCCATTCAGCTTCATGCCA+AGG 0.560266 7.1:-7979516 MS.gene22484:CDS
GCGGTTAAAGAAAGAGCCAT+TGG 0.564174 7.1:+7981396 None:intergenic
ATATGTTTGCTCTCTTGTAA+GGG 0.565381 7.1:+7979605 None:intergenic
CTCTACCCTCTTCTTCCTGG+TGG 0.567336 7.1:+7979299 None:intergenic
AATGCCATTGAAAGAGGAGG+AGG 0.570879 7.1:+7981278 None:intergenic
CACCAGGAAGAAGAGGGTAG+AGG 0.576801 7.1:-7979298 MS.gene22484:intron
GATGTTGTCAGGATATTGCT+AGG 0.578352 7.1:-7979486 MS.gene22484:CDS
CGCGAAGAGGAGGAGGAGGA+AGG 0.578691 7.1:+7981367 None:intergenic
ATGTAGCCACCAGGAAGAAG+AGG 0.579614 7.1:-7979305 MS.gene22484:CDS
TTTAGTTATTAGTAAAGCTG+AGG 0.585548 7.1:-7980798 MS.gene22484:CDS
GTGGAAACGTGACAAGCGAA+AGG 0.589894 7.1:+7981210 None:intergenic
TCGGTTTGCTGCAATATGCA+AGG 0.591137 7.1:+7980184 None:intergenic
TGCATATTGCAGCAAACCGA+AGG 0.591793 7.1:-7980181 MS.gene22484:CDS
AGAACAAGACCACGAGCTCA+AGG 0.591807 7.1:-7980752 MS.gene22484:CDS
GCTTCGACAACAGACTCAGC+AGG 0.592546 7.1:+7980671 None:intergenic
AGTAGGTTATCGCGAAGAGG+AGG 0.594149 7.1:+7981357 None:intergenic
TGTAGCCACCAGGAAGAAGA+GGG 0.595191 7.1:-7979304 MS.gene22484:CDS
ATGTTGTCAGGATATTGCTA+GGG 0.597334 7.1:-7979485 MS.gene22484:CDS
GCTCGAAGGACTGATAAGAA+AGG 0.603769 7.1:-7979447 MS.gene22484:CDS
CATTGCAACATGTAGCCACC+AGG 0.604927 7.1:-7979314 MS.gene22484:CDS
AGGACGTGCAGCTTGCTCGA+AGG 0.607568 7.1:-7979461 MS.gene22484:CDS
GGAAATGCCATTGAAAGAGG+AGG 0.609125 7.1:+7981275 None:intergenic
CAAAGGAGTTAGTTGTGAAG+TGG 0.610992 7.1:-7979400 MS.gene22484:CDS
CAGTCCCAAACAGTCTCAGA+AGG 0.611940 7.1:-7978282 MS.gene22484:intron
CTTGTAAGGGCAGATACAAG+AGG 0.618043 7.1:+7979618 None:intergenic
GGAATTTGAGTAGGTTGGGG+CGG 0.619152 7.1:+7981316 None:intergenic
TGGAAACGTGACAAGCGAAA+GGG 0.620617 7.1:+7981211 None:intergenic
TTAGCACGACCTTGAGCTCG+TGG 0.620789 7.1:+7980743 None:intergenic
GTTTCCACTTCCCAATTCGG+AGG 0.621201 7.1:-7981195 MS.gene22484:intron
GAAAGTAGGTTATCGCGAAG+AGG 0.631393 7.1:+7981354 None:intergenic
TTGAAAGAGGAGGAGGAGGA+GGG 0.632435 7.1:+7981285 None:intergenic
TGTCAGGATATTGCTAGGGA+AGG 0.637318 7.1:-7979481 MS.gene22484:CDS
AAGATCATCCATTCTCAATG+AGG 0.638894 7.1:-7980305 MS.gene22484:intron
AATGTGTTTCCCTACAGCAA+CGG 0.640045 7.1:+7980994 None:intergenic
AGGAGGAGGAAGGTTAATGG+CGG 0.642023 7.1:+7981377 None:intergenic
GCAGGACAGCACGTCAAGAG+CGG 0.650908 7.1:+7978229 None:intergenic
AGTAAAGCTGAGGTTAACGA+AGG 0.663018 7.1:-7980788 MS.gene22484:CDS
GCTAATGCAAGCAATAACCT+GGG 0.676278 7.1:-7980836 MS.gene22484:CDS
ACAATCTCCACTTTATATGG+CGG 0.677536 7.1:-7979424 MS.gene22484:CDS
GCACGTCAAGAGCGGCACAG+AGG 0.739688 7.1:+7978237 None:intergenic
CAGCAAACCGAAGGTCACCG+AGG 0.743148 7.1:-7980172 MS.gene22484:intron
TTTAGCGGTGCAGATCAGGG+TGG 0.747271 7.1:+7978207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTTAACAAAAATAAAT+AGG + chr7.1:7980950-7980969 None:intergenic 10.0%
!! TTAATATCATTATTATTTAC+TGG - chr7.1:7980694-7980713 MS.gene22484:CDS 10.0%
!!! GAAATTAATTTATTTTGTTA+TGG - chr7.1:7979182-7979201 MS.gene22484:intron 10.0%
!!! TTTATTTTATTTTTTCGTTA+TGG - chr7.1:7979743-7979762 MS.gene22484:intron 10.0%
!! ATTTAACAAAAATAAATAGG+TGG + chr7.1:7980947-7980966 None:intergenic 15.0%
!!! AATTCTATAATGAAATGTTT+TGG - chr7.1:7979148-7979167 MS.gene22484:intron 15.0%
!!! ATCACAATTATAACTTTTTT+TGG + chr7.1:7979530-7979549 None:intergenic 15.0%
!!! GTATTTTTATATTTATACCT+CGG + chr7.1:7979449-7979468 None:intergenic 15.0%
!!! TCAATATTTTAATCAAACTT+TGG - chr7.1:7978476-7978495 MS.gene22484:intron 15.0%
!!! TCACAATTATAACTTTTTTT+GGG + chr7.1:7979529-7979548 None:intergenic 15.0%
!! AAAAATTCCCAGATAAATTA+TGG + chr7.1:7980976-7980995 None:intergenic 20.0%
!! AATACAATAATGCATTTGAT+TGG - chr7.1:7981038-7981057 MS.gene22484:intron 20.0%
!! AATTAATCTGTTTAGTTAGA+TGG - chr7.1:7978511-7978530 MS.gene22484:intron 20.0%
!! ATTATTATTTACTGGATTCT+AGG - chr7.1:7980702-7980721 MS.gene22484:CDS 20.0%
!! TATCTAAGCACTTATATAAT+AGG - chr7.1:7979774-7979793 MS.gene22484:intron 20.0%
!! TTATATATTGTTGTGAATTG+TGG - chr7.1:7979889-7979908 MS.gene22484:intron 20.0%
!! TTATTATTTACTGGATTCTA+GGG - chr7.1:7980703-7980722 MS.gene22484:CDS 20.0%
!!! AATACTATGCATTTTTTACA+TGG + chr7.1:7981000-7981019 None:intergenic 20.0%
!!! ATAATGAAATGTTTTGGTAT+TGG - chr7.1:7979154-7979173 MS.gene22484:intron 20.0%
!!! ATACAGATACATATACTTTT+TGG + chr7.1:7978980-7978999 None:intergenic 20.0%
!!! ATTAATTGATGATCAAATGA+TGG - chr7.1:7979229-7979248 MS.gene22484:intron 20.0%
!!! ATTTTAATTTAATGCAGTTC+AGG - chr7.1:7978560-7978579 MS.gene22484:intron 20.0%
!!! CACAATTATAACTTTTTTTG+GGG + chr7.1:7979528-7979547 None:intergenic 20.0%
!!! TTAATTGATGATCAAATGAT+GGG - chr7.1:7979230-7979249 MS.gene22484:intron 20.0%
! AAACAAAAGTGAAACCATTA+TGG + chr7.1:7980836-7980855 None:intergenic 25.0%
! AAACCATTAGATTCAATCAA+CGG + chr7.1:7980873-7980892 None:intergenic 25.0%
! AACAAAAGTGAAACCATTAT+GGG + chr7.1:7980835-7980854 None:intergenic 25.0%
! AATGGAAATTGAAGAGAAAA+TGG + chr7.1:7980674-7980693 None:intergenic 25.0%
! ACATTTACAATTTCCCATAA+TGG - chr7.1:7980819-7980838 MS.gene22484:CDS 25.0%
! ACCAAAACAAAAATACCATT+AGG - chr7.1:7980756-7980775 MS.gene22484:CDS 25.0%
! AGAGTAGATGTGTTAATTTA+TGG - chr7.1:7980637-7980656 MS.gene22484:intron 25.0%
! AGATGTAATCTAAATATGCA+TGG + chr7.1:7981205-7981224 None:intergenic 25.0%
! ATAAGCTGAAAACAGTTTAT+AGG + chr7.1:7979660-7979679 None:intergenic 25.0%
! ATGCATATTTAGATTACATC+TGG - chr7.1:7981204-7981223 MS.gene22484:CDS 25.0%
! ATGGAAATTGAAGAGAAAAT+GGG + chr7.1:7980673-7980692 None:intergenic 25.0%
! ATTCCATCAAATGTAATGAT+AGG + chr7.1:7979015-7979034 None:intergenic 25.0%
! ATTGAAATTGAGAAGAAAGT+AGG + chr7.1:7978264-7978283 None:intergenic 25.0%
! ATTTAGATTACATCTGGAAA+TGG - chr7.1:7981210-7981229 MS.gene22484:CDS 25.0%
! CATATTACTATCACAGTTAA+AGG - chr7.1:7978903-7978922 MS.gene22484:intron 25.0%
! CATCAGAGTAAAAAATAAAG+AGG + chr7.1:7980502-7980521 None:intergenic 25.0%
! GAGTAGATGTGTTAATTTAT+GGG - chr7.1:7980638-7980657 MS.gene22484:intron 25.0%
! TCAAATAATCTAATCCAAAC+AGG + chr7.1:7979570-7979589 None:intergenic 25.0%
! TTTAGTTATTAGTAAAGCTG+AGG - chr7.1:7978803-7978822 MS.gene22484:intron 25.0%
!! AAAATAAATAGGTGGATTCT+AGG + chr7.1:7980939-7980958 None:intergenic 25.0%
!! AAATAAATAGGTGGATTCTA+GGG + chr7.1:7980938-7980957 None:intergenic 25.0%
!! TCATAGTAAATTGATGCTTT+TGG + chr7.1:7980590-7980609 None:intergenic 25.0%
!! TTGTTGTTGTTGTTGTTATT+GGG + chr7.1:7978367-7978386 None:intergenic 25.0%
!!! ACCTAATGGTATTTTTGTTT+TGG + chr7.1:7980760-7980779 None:intergenic 25.0%
!!! ATATACTTTTTGGCTCAAAT+AGG + chr7.1:7978970-7978989 None:intergenic 25.0%
!!! ATCTAATGGTTTTTTTGTTC+TGG - chr7.1:7980881-7980900 MS.gene22484:CDS 25.0%
!!! CTCTTTATTTTTTACTCTGA+TGG - chr7.1:7980500-7980519 MS.gene22484:intron 25.0%
!!! TGTATTCGTGCTTTAAATTT+TGG + chr7.1:7981024-7981043 None:intergenic 25.0%
ACTAGGTTATGTCAATAGAT+AGG + chr7.1:7979594-7979613 None:intergenic 30.0%
AGAGAACACAATCTTAAGAA+TGG + chr7.1:7978739-7978758 None:intergenic 30.0%
AGTTGTTTATACAAACAGTC+AGG - chr7.1:7979807-7979826 MS.gene22484:intron 30.0%
ATACATCGCCATAATTTATC+TGG - chr7.1:7980965-7980984 MS.gene22484:CDS 30.0%
ATATGTTTGCTCTCTTGTAA+GGG + chr7.1:7979999-7980018 None:intergenic 30.0%
ATCATAAGTGTTTCTTCGTA+TGG + chr7.1:7978684-7978703 None:intergenic 30.0%
ATGTTTGAATGATCGAGATT+CGG - chr7.1:7981234-7981253 MS.gene22484:CDS 30.0%
CCATATTCACATACACAAAA+GGG - chr7.1:7980393-7980412 MS.gene22484:intron 30.0%
CGAAGAAACACTTATGATAT+TGG - chr7.1:7978686-7978705 MS.gene22484:intron 30.0%
CTTATTTCCATATGCTCTTT+AGG - chr7.1:7979675-7979694 MS.gene22484:CDS 30.0%
TACATCGCCATAATTTATCT+GGG - chr7.1:7980966-7980985 MS.gene22484:CDS 30.0%
TCCATATTCACATACACAAA+AGG - chr7.1:7980392-7980411 MS.gene22484:intron 30.0%
TTAGAATTAGCTAGATCCAA+TGG - chr7.1:7980052-7980071 MS.gene22484:intron 30.0%
! GTTGTTGTTGTTGTTGTTAT+TGG + chr7.1:7978368-7978387 None:intergenic 30.0%
!! ATTCTCTCCACTTTTAGAAA+TGG - chr7.1:7981167-7981186 MS.gene22484:intron 30.0%
!! GGTTTTGATAATCTCGTAAA+AGG - chr7.1:7981255-7981274 MS.gene22484:CDS 30.0%
!!! GTATTTTTGTTTTGGTCTAC+TGG + chr7.1:7980752-7980771 None:intergenic 30.0%
AACCTAGTGTGAGACTATTT+GGG - chr7.1:7979606-7979625 MS.gene22484:CDS 35.0%
AAGATCATCCATTCTCAATG+AGG - chr7.1:7979296-7979315 MS.gene22484:intron 35.0%
AAGGATATGTTGATGTTGTC+AGG - chr7.1:7980104-7980123 MS.gene22484:intron 35.0%
AATCTTAAGAATGGTTTCGC+AGG + chr7.1:7978730-7978749 None:intergenic 35.0%
ACAATCTCCACTTTATATGG+CGG - chr7.1:7980177-7980196 MS.gene22484:CDS 35.0%
AGGACAATCTCCACTTTATA+TGG - chr7.1:7980174-7980193 MS.gene22484:CDS 35.0%
ATACCATTAGGTTCAATCAG+CGG - chr7.1:7980768-7980787 MS.gene22484:CDS 35.0%
ATGTTGTCAGGATATTGCTA+GGG - chr7.1:7980116-7980135 MS.gene22484:intron 35.0%
CATATGTTTGCTCTCTTGTA+AGG + chr7.1:7980000-7980019 None:intergenic 35.0%
CCATCAAATGTAATGATAGG+AGG + chr7.1:7979012-7979031 None:intergenic 35.0%
CCTCCTATCATTACATTTGA+TGG - chr7.1:7979009-7979028 MS.gene22484:intron 35.0%
CTAAATATGCATGGAACTAG+AGG + chr7.1:7981196-7981215 None:intergenic 35.0%
CTAGCTAATTCTAACTGACT+AGG + chr7.1:7980046-7980065 None:intergenic 35.0%
TAACCTAGTGTGAGACTATT+TGG - chr7.1:7979605-7979624 MS.gene22484:CDS 35.0%
TCACATACACAAAAGGGAAT+GGG - chr7.1:7980399-7980418 MS.gene22484:intron 35.0%
TGACAACATCAACATATCCT+TGG + chr7.1:7980105-7980124 None:intergenic 35.0%
TGTGATTGCTTTAGTGCTAT+TGG - chr7.1:7979544-7979563 MS.gene22484:CDS 35.0%
TTCACATACACAAAAGGGAA+TGG - chr7.1:7980398-7980417 MS.gene22484:intron 35.0%
! AAGCTATCCTAAAGAGCATA+TGG + chr7.1:7979685-7979704 None:intergenic 35.0%
! AGTAATTTTTCCGACGAATC+TGG - chr7.1:7981144-7981163 MS.gene22484:intron 35.0%
! CCCTTTTGTGTATGTGAATA+TGG + chr7.1:7980396-7980415 None:intergenic 35.0%
! TGACCGTTGATTGAATCTAA+TGG - chr7.1:7980867-7980886 MS.gene22484:CDS 35.0%
! TGCGTGATTTTTGTCAAAAC+TGG - chr7.1:7981081-7981100 MS.gene22484:intron 35.0%
!! AACTTGATTTGCTTAAACCC+AGG + chr7.1:7978785-7978804 None:intergenic 35.0%
!! GTATTTTGGGGAATTTGAGT+AGG + chr7.1:7978297-7978316 None:intergenic 35.0%
!! GTTTTGACAAAAATCACGCA+TGG + chr7.1:7981081-7981100 None:intergenic 35.0%
!! TAAAAGAGTACCTCCGAATT+GGG + chr7.1:7978419-7978438 None:intergenic 35.0%
!!! TTCTGCATTTTGACTTCTAC+AGG - chr7.1:7979070-7979089 MS.gene22484:intron 35.0%
AATGTGTTTCCCTACAGCAA+CGG + chr7.1:7978610-7978629 None:intergenic 40.0%
AGCTAATGCAAGCAATAACC+TGG - chr7.1:7978764-7978783 MS.gene22484:intron 40.0%
AGTAAAGCTGAGGTTAACGA+AGG - chr7.1:7978813-7978832 MS.gene22484:intron 40.0%
ATGGAGTGCATTCTTTCCAT+TGG + chr7.1:7980071-7980090 None:intergenic 40.0%
ATTTATACCTCGGTGACCTT+CGG + chr7.1:7979439-7979458 None:intergenic 40.0%
CAAAGGAGTTAGTTGTGAAG+TGG - chr7.1:7980201-7980220 MS.gene22484:CDS 40.0%
CAATGGCATTTCCCTCAAAA+CGG - chr7.1:7978336-7978355 MS.gene22484:intron 40.0%
CCATTCTCAATGAGGTCAAT+GGG - chr7.1:7979304-7979323 MS.gene22484:CDS 40.0%
CTTAAGATTGTGTTCTCTGC+TGG - chr7.1:7978741-7978760 MS.gene22484:intron 40.0%
GATGTTGTCAGGATATTGCT+AGG - chr7.1:7980115-7980134 MS.gene22484:intron 40.0%
GCTAATGCAAGCAATAACCT+GGG - chr7.1:7978765-7978784 MS.gene22484:intron 40.0%
GGCTTCTGCATACGATTTAT+TGG + chr7.1:7978589-7978608 None:intergenic 40.0%
TCAATTAAGTCCATCACCAG+TGG + chr7.1:7980908-7980927 None:intergenic 40.0%
TCCATTCTCAATGAGGTCAA+TGG - chr7.1:7979303-7979322 MS.gene22484:CDS 40.0%
TCTCTTTAGTAGCGTAAGGA+AGG + chr7.1:7979392-7979411 None:intergenic 40.0%
TTCCCAAATAGTCTCACACT+AGG + chr7.1:7979611-7979630 None:intergenic 40.0%
TTGGCTCAAATAGGATCAAG+AGG + chr7.1:7978961-7978980 None:intergenic 40.0%
TTGGGGAATTTGAGTAGGTT+GGG + chr7.1:7978292-7978311 None:intergenic 40.0%
TTTGGGGAATTTGAGTAGGT+TGG + chr7.1:7978293-7978312 None:intergenic 40.0%
! ACATCGAGCGAGATTTTCTT+AGG - chr7.1:7981292-7981311 MS.gene22484:CDS 40.0%
! ATTGGGAGTAACCGTTTTGA+GGG + chr7.1:7978350-7978369 None:intergenic 40.0%
! CAAATGATGGGAACATTCAG+TGG - chr7.1:7979242-7979261 MS.gene22484:intron 40.0%
! GAGGTCTCCATTTCTAAAAG+TGG + chr7.1:7981177-7981196 None:intergenic 40.0%
! GCAAATGTCTTGATTAGCTC+TGG + chr7.1:7979947-7979966 None:intergenic 40.0%
! TATTGGGAGTAACCGTTTTG+AGG + chr7.1:7978351-7978370 None:intergenic 40.0%
! TTTAGTGCTATTGGCCTGTT+TGG - chr7.1:7979553-7979572 MS.gene22484:CDS 40.0%
!! ATAGGTGGATTCTAGGGTAA+AGG + chr7.1:7980932-7980951 None:intergenic 40.0%
!! GACAAGTACGCTTTAGAATC+CGG + chr7.1:7978884-7978903 None:intergenic 40.0%
!! GTAAAAGAGTACCTCCGAAT+TGG + chr7.1:7978420-7978439 None:intergenic 40.0%
!! TAGGTGGATTCTAGGGTAAA+GGG + chr7.1:7980931-7980950 None:intergenic 40.0%
!! TCTTGATTAGCTCTGGATCA+TGG + chr7.1:7979940-7979959 None:intergenic 40.0%
!!! GTTTTTTTGTTCTGGTCCAC+TGG - chr7.1:7980889-7980908 MS.gene22484:CDS 40.0%
!!! TTGTTTTGGTCTACTGGTGA+GGG + chr7.1:7980746-7980765 None:intergenic 40.0%
!!! TTTGTTTTGGTCTACTGGTG+AGG + chr7.1:7980747-7980766 None:intergenic 40.0%
AAAACGTCCTTTCTCAGCAG+CGG + chr7.1:7979352-7979371 None:intergenic 45.0%
AATGCCATTGAAAGAGGAGG+AGG + chr7.1:7978326-7978345 None:intergenic 45.0%
AGAGTCATCGACACAATTCG+CGG - chr7.1:7978654-7978673 MS.gene22484:intron 45.0%
ATCCTTGGCATGAAGCTGAA+TGG + chr7.1:7980090-7980109 None:intergenic 45.0%
CACGTTTCCACTTCCCAATT+CGG - chr7.1:7978403-7978422 MS.gene22484:intron 45.0%
CCACTTTATATGGCGGTCAA+AGG - chr7.1:7980184-7980203 MS.gene22484:CDS 45.0%
CCCATTGACCTCATTGAGAA+TGG + chr7.1:7979307-7979326 None:intergenic 45.0%
CCTTTGACCGCCATATAAAG+TGG + chr7.1:7980187-7980206 None:intergenic 45.0%
CTTGTAAGGGCAGATACAAG+AGG + chr7.1:7979986-7980005 None:intergenic 45.0%
GAAAGTAGGTTATCGCGAAG+AGG + chr7.1:7978250-7978269 None:intergenic 45.0%
GAGGGAAATGCCATTGAAAG+AGG + chr7.1:7978332-7978351 None:intergenic 45.0%
GCAGTCTCTTTAGTAGCGTA+AGG + chr7.1:7979396-7979415 None:intergenic 45.0%
GCAGTGTTTCGAAACTTGTC+AGG + chr7.1:7980268-7980287 None:intergenic 45.0%
GCTCGAAGGACTGATAAGAA+AGG - chr7.1:7980154-7980173 MS.gene22484:intron 45.0%
GGAAATGCCATTGAAAGAGG+AGG + chr7.1:7978329-7978348 None:intergenic 45.0%
TGCATATTGCAGCAAACCGA+AGG - chr7.1:7979420-7979439 MS.gene22484:CDS 45.0%
TGGAAACGTGACAAGCGAAA+GGG + chr7.1:7978393-7978412 None:intergenic 45.0%
TGGAGAGAATCCAGATTCGT+CGG + chr7.1:7981157-7981176 None:intergenic 45.0%
TGGGGAATTTGAGTAGGTTG+GGG + chr7.1:7978291-7978310 None:intergenic 45.0%
TGTCAGGATATTGCTAGGGA+AGG - chr7.1:7980120-7980139 MS.gene22484:intron 45.0%
! TGACCGCTGATTGAACCTAA+TGG + chr7.1:7980774-7980793 None:intergenic 45.0%
!! AACTGCCTTCTGAGACTGTT+TGG + chr7.1:7981327-7981346 None:intergenic 45.0%
!! ACTGCCTTCTGAGACTGTTT+GGG + chr7.1:7981326-7981345 None:intergenic 45.0%
!! ATTTACTGGATTCTAGGGCG+AGG - chr7.1:7980708-7980727 MS.gene22484:CDS 45.0%
!! TCGGTTTGCTGCAATATGCA+AGG + chr7.1:7979420-7979439 None:intergenic 45.0%
!! TTTACTGGATTCTAGGGCGA+GGG - chr7.1:7980709-7980728 MS.gene22484:CDS 45.0%
!! AAATAATAATGATATTAAAA+TGG + chr7.1:7980692-7980711 None:intergenic 5.0%
AGAACAAGACCACGAGCTCA+AGG - chr7.1:7978849-7978868 MS.gene22484:intron 50.0%
AGGAGGAGGAAGGTTAATGG+CGG + chr7.1:7978227-7978246 None:intergenic 50.0%
AGGAGGAGGAGGAAGGTTAA+TGG + chr7.1:7978230-7978249 None:intergenic 50.0%
AGTACCTCCGAATTGGGAAG+TGG + chr7.1:7978413-7978432 None:intergenic 50.0%
AGTAGGTTATCGCGAAGAGG+AGG + chr7.1:7978247-7978266 None:intergenic 50.0%
ATGCAGAAGCCGTTGCTGTA+GGG - chr7.1:7978598-7978617 MS.gene22484:intron 50.0%
ATGTAGCCACCAGGAAGAAG+AGG - chr7.1:7980296-7980315 MS.gene22484:intron 50.0%
ATTGAAAGAGGAGGAGGAGG+AGG + chr7.1:7978320-7978339 None:intergenic 50.0%
CAGTCCCAAACAGTCTCAGA+AGG - chr7.1:7981319-7981338 MS.gene22484:CDS 50.0%
CATTGCAACATGTAGCCACC+AGG - chr7.1:7980287-7980306 MS.gene22484:intron 50.0%
CTCCATTCAGCTTCATGCCA+AGG - chr7.1:7980085-7980104 MS.gene22484:intron 50.0%
CTGTTTACCGCTGCTGAGAA+AGG - chr7.1:7979342-7979361 MS.gene22484:CDS 50.0%
GTGGAAACGTGACAAGCGAA+AGG + chr7.1:7978394-7978413 None:intergenic 50.0%
GTTTCCACTTCCCAATTCGG+AGG - chr7.1:7978406-7978425 MS.gene22484:intron 50.0%
TACCTCTACCCTCTTCTTCC+TGG + chr7.1:7980308-7980327 None:intergenic 50.0%
TATGCAGAAGCCGTTGCTGT+AGG - chr7.1:7978597-7978616 MS.gene22484:intron 50.0%
TCCTCCTCCTCCTCTTTCAA+TGG - chr7.1:7978319-7978338 MS.gene22484:intron 50.0%
TGTAGCCACCAGGAAGAAGA+GGG - chr7.1:7980297-7980316 MS.gene22484:intron 50.0%
TTGAAAGAGGAGGAGGAGGA+GGG + chr7.1:7978319-7978338 None:intergenic 50.0%
TTGTTCTGGTCCACTGGTGA+TGG - chr7.1:7980895-7980914 MS.gene22484:CDS 50.0%
! GGAATTTGAGTAGGTTGGGG+CGG + chr7.1:7978288-7978307 None:intergenic 50.0%
!!! AGGAGGAGGAGGGTATTTTG+GGG + chr7.1:7978309-7978328 None:intergenic 50.0%
!!! GAGGAGGAGGAGGGTATTTT+GGG + chr7.1:7978310-7978329 None:intergenic 50.0%
AGGTTATCGCGAAGAGGAGG+AGG + chr7.1:7978244-7978263 None:intergenic 55.0%
ATGGTTTCGCAGGCGCGATA+AGG + chr7.1:7978720-7978739 None:intergenic 55.0%
CACCAGGAAGAAGAGGGTAG+AGG - chr7.1:7980303-7980322 MS.gene22484:intron 55.0%
CTCAGCAGCGGTAAACAGAG+CGG + chr7.1:7979340-7979359 None:intergenic 55.0%
CTCTACCCTCTTCTTCCTGG+TGG + chr7.1:7980305-7980324 None:intergenic 55.0%
GAGCTCAAGGTCGTGCTAAC+CGG - chr7.1:7978862-7978881 MS.gene22484:intron 55.0%
GCCATTGAAAGAGGAGGAGG+AGG + chr7.1:7978323-7978342 None:intergenic 55.0%
GCTTCGACAACAGACTCAGC+AGG + chr7.1:7978933-7978952 None:intergenic 55.0%
TTAGCACGACCTTGAGCTCG+TGG + chr7.1:7978861-7978880 None:intergenic 55.0%
TTATCGCGAAGAGGAGGAGG+AGG + chr7.1:7978241-7978260 None:intergenic 55.0%
!!! GGAGGAGGAGGAGGGTATTT+TGG + chr7.1:7978311-7978330 None:intergenic 55.0%
CAGCAAACCGAAGGTCACCG+AGG - chr7.1:7979429-7979448 MS.gene22484:CDS 60.0%
GCAGGACAGCACGTCAAGAG+CGG + chr7.1:7981375-7981394 None:intergenic 60.0%
! AGGACGTGCAGCTTGCTCGA+AGG - chr7.1:7980140-7980159 MS.gene22484:intron 60.0%
CGCGAAGAGGAGGAGGAGGA+AGG + chr7.1:7978237-7978256 None:intergenic 65.0%
GCACGTCAAGAGCGGCACAG+AGG + chr7.1:7981367-7981386 None:intergenic 65.0%
GCGGTGCAGATCAGGGTGGC+AGG + chr7.1:7981393-7981412 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 7978208 7981415 7978208 ID=MS.gene22484
chr7.1 mRNA 7978208 7981415 7978208 ID=MS.gene22484.t1;Parent=MS.gene22484
chr7.1 exon 7981196 7981415 7981196 ID=MS.gene22484.t1.exon1;Parent=MS.gene22484.t1
chr7.1 CDS 7981196 7981415 7981196 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
chr7.1 exon 7980669 7981046 7980669 ID=MS.gene22484.t1.exon2;Parent=MS.gene22484.t1
chr7.1 CDS 7980669 7981046 7980669 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
chr7.1 exon 7980306 7980361 7980306 ID=MS.gene22484.t1.exon3;Parent=MS.gene22484.t1
chr7.1 CDS 7980306 7980361 7980306 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
chr7.1 exon 7980173 7980236 7980173 ID=MS.gene22484.t1.exon4;Parent=MS.gene22484.t1
chr7.1 CDS 7980173 7980236 7980173 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
chr7.1 exon 7979299 7979708 7979299 ID=MS.gene22484.t1.exon5;Parent=MS.gene22484.t1
chr7.1 CDS 7979299 7979708 7979299 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
chr7.1 exon 7978208 7978291 7978208 ID=MS.gene22484.t1.exon6;Parent=MS.gene22484.t1
chr7.1 CDS 7978208 7978291 7978208 ID=cds.MS.gene22484.t1;Parent=MS.gene22484.t1
Gene Sequence

>MS.gene22484

ATGGCTCTTTCTTTAACCGCCATTAACCTTCCTCCTCCTCCTCTTCGCGATAACCTACTTTCTTCTCAATTTCAATTCCGCCCCAACCTACTCAAATTCCCCAAAATACCCTCCTCCTCCTCCTCTTTCAATGGCATTTCCCTCAAAACGGTTACTCCCAATAACAACAACAACAACAACAACCCTTTCGCTTGTCACGTTTCCACTTCCCAATTCGGAGGTACTCTTTTACTCTCTTCTTGTATTTATGCTTTTTACTATATTCTATTCAATATTTTAATCAAACTTTGGTGTTAATGTAGTAATTAATCTGTTTAGTTAGATGGATATGATGACAAATAAATTAACAGACATTTTAATTTAATGCAGTTCAGGAGACCAATAAATCGTATGCAGAAGCCGTTGCTGTAGGGAAACACATTCGTATGTCTGCTGACAAAGCTCGAAGAGTCATCGACACAATTCGCGGACGTCCATACGAAGAAACACTTATGATATTGGAACTCATGCCTTATCGCGCCTGCGAAACCATTCTTAAGATTGTGTTCTCTGCTGGAGCTAATGCAAGCAATAACCTGGGTTTAAGCAAATCAAGTTTAGTTATTAGTAAAGCTGAGGTTAACGAAGGCAGAACTATGAAAAGAACAAGACCACGAGCTCAAGGTCGTGCTAACCGGATTCTAAAGCGTACTTGTCATATTACTATCACAGTTAAAGGTTTACCTGCTGAGTCTGTTGTCGAAGCAAGTTCCTCTTGATCCTATTTGAGCCAAAAAGTATATGTATCTGTATTATGAATCTCCTCCTATCATTACATTTGATGGAATTTTCTGCATTTTGATAATGTGTAGTTCAATTAATTTTCTGCATTTTGACTTCTACAGGAATATTTTGTGAATCTTATAAGTGTACTATGTAGAACTGTTTGAACATTCAACTTAATTCTATAATGAAATGTTTTGGTATTGGTATTTGAAATTAATTTATTTTGTTATGGAGTACTTATTTTGAAATTAATTCAATTAATTGATGATCAAATGATGGGAACATTCAGTGGCGTTGAGTTTGATGTTGAAGCTCACAGATATAAGATCATCCATTCTCAATGAGGTCAATGGGTTGAGTGCAACCGCTCTGTTTACCGCTGCTGAGAAAGGACGTTTTGATGTCGTCTAAGAGCTCCTTCCTTACGCTACTAAAGAGACTGCTCCTTGCATATTGCAGCAAACCGAAGGTCACCGAGGTATAAATATAAAAATACTTTTGTATATATCAGAAACATTTCTTCAATGTTAGTTATAATTGTGATTATTTCTACCCCAAAAAAAGTTATAATTGTGATTGCTTTAGTGCTATTGGCCTGTTTGGATTAGATTATTTGAACCTATCTATTGACATAACCTAGTGTGAGACTATTTGGGAAAGCTTATACATACGACTTGTGACACACCTATAAACTGTTTTCAGCTTATTTCCATATGCTCTTTAGGATAGCTTATGACTTCAGTTTATAAATTATATGAAAATAATTTAACTTTATTTTATTTTTTCGTTATGGAAAATGCTTATCTAAGCACTTATATAATAGGCGCTTAATTAAGTTGTTTATACAAACAGTCAGGTTATGATTTTGATTTTGATATTGATATTGATAATTAGTTGTTCTTTGTAGACACTGTTATTATATATTGTTGTGAATTGTGGCAGATGTTGTGCAGTTGCTGCTAGACCATGATCCAGAGCTAATCAAGACATTTGCACAGTCAAATGCAACTCCTCTTGTATCTGCCCTTACAAGAGAGCAAACATATGTTGTTGAACTACTATCATGCGATCCTAGTCAGTTAGAATTAGCTAGATCCAATGGAAAGAATGCACTCCATTCAGCTTCATGCCAAGGATATGTTGATGTTGTCAGGATATTGCTAGGGAAGGACGTGCAGCTTGCTCGAAGGACTGATAAGAAAGGACAATCTCCACTTTATATGGCGGTCAAAGGAGTTAGTTGTGAAGTGGTGAAGTTGCTTCTTGCTGCTGATGTTGCAAGTATCATGCTTCCTGACAAGTTTCGAAACACTGCATTGCAACATGTAGCCACCAGGAAGAAGAGGGTAGAGGTAATTAATGTCTTTGCTGCTCAACTTTAAACAGTCATCTATGCATATATTAACATTGAAGAACGATTCCATATTCACATACACAAAAGGGAATGGGATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATGCAAGTACCTCTTTATTTTTTACTCTGATGGAATGATTGAAATATCATTCATTTGTGTAGTTCAAAAAGTATGAATAGCTTAAGCAATATACACACCAAAAGCATCAATTTACTATGAGAGATGTGAAAGCATTTTTCACGAAGTAGAGTAGATGTGTTAATTTATGGGTCAAACATACCCATTTTCTCTTCAATTTCCATTTTAATATCATTATTATTTACTGGATTCTAGGGCGAGGGATCAATCAAGTCCCTCACCAGTAGACCAAAACAAAAATACCATTAGGTTCAATCAGCGGTCAAGATTTATTGAAAATAAAAGTGAGAACATTTACAATTTCCCATAATGGTTTCACTTTTGTTTTCTATAAATCTTGACCGTTGATTGAATCTAATGGTTTTTTTGTTCTGGTCCACTGGTGATGGACTTAATTGACCCTTTACCCTAGAATCCACCTATTTATTTTTGTTAAATACATCGCCATAATTTATCTGGGAATTTTTTCCATGTAAAAAATGCATAGTATTACCAAAATTTAAAGCACGAATACAATAATGCATTTGATTGGTTCTTTTCAATTGTCTACCATGCGTGATTTTTGTCAAAACTGGTTCTCAACTGAAATACACTTGACATTCTTGCAATTCTTGAAGTAATTTTTCCGACGAATCTGGATTCTCTCCACTTTTAGAAATGGAGACCTCTAGTTCCATGCATATTTAGATTACATCTGGAAATGGAATGTTTGAATGATCGAGATTCGGTTTTGATAATCTCGTAAAAGGAAATCATGCTAAGTACATCGAGCGAGATTTTCTTAGGATATCAGTCCCAAACAGTCTCAGAAGGCAGTTGCTAGTTGCTACACAAGCCTCTGTGCCGCTCTTGACGTGCTGTCCTGCCACCCTGATCTGCACCGCTAA

Protein sequence

>MS.gene22484.t1

MALSLTAINLPPPPLRDNLLSSQFQFRPNLLKFPKIPSSSSSFNGISLKTVTPNNNNNNNNPFACHVSTSQFGVQETNKSYAEAVAVGKHIRMSADKARRVIDTIRGRPYEETLMILELMPYRACETILKIVFSAGANASNNLGLSKSSLVISKAEVNEGRTMKRTRPRAQGRANRILKRTCHITITVKGLPAESVVEAMALSLMLKLTDIRSSILNELLPYATKETAPCILQQTEGHRDVVQLLLDHDPELIKTFAQSNATPLVSALTREQTYVVELLSCDPSQLELARSNGKNALHSASCQGYVDVVRILLGKDVQLARRTDKKGQSPLYMAVKGVSCEVVKLLLAADVASIMLPDKFRNTALQHVATRKKRVESQKAVASCYTSLCAALDVLSCHPDLHR