Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91778.t1 | XP_013443819.1 | 98.2 | 624 | 10 | 1 | 1 | 623 | 1 | 624 | 0.00E+00 | 1201.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91778.t1 | F4HVW5 | 46.1 | 607 | 269 | 11 | 19 | 621 | 38 | 590 | 4.3e-131 | 469.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91778.t1 | A0A072TJX9 | 98.2 | 624 | 10 | 1 | 1 | 623 | 1 | 624 | 0.0e+00 | 1201.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene91778 | 0.859671 | 3.52E-63 | -1.69E-46 |
| MS.gene04918 | MS.gene91778 | 0.819429 | 1.17E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene91778 | 0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene91778 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene91778 | 0.814619 | 1.40E-51 | -1.69E-46 |
| MS.gene049300 | MS.gene91778 | 0.810495 | 1.12E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene91778 | 0.817472 | 3.24E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene91778 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene91778 | 0.834577 | 2.77E-56 | -1.69E-46 |
| MS.gene049711 | MS.gene91778 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene049744 | MS.gene91778 | 0.825631 | 4.22E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene91778 | 0.800746 | 1.25E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene91778 | 0.818739 | 1.67E-52 | -1.69E-46 |
| MS.gene050258 | MS.gene91778 | 0.811346 | 7.33E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene91778 | 0.811726 | 6.06E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene91778 | 0.807468 | 4.98E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene91778 | 0.826483 | 2.65E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene91778 | 0.810282 | 1.25E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene91778 | 0.861001 | 1.39E-63 | -1.69E-46 |
| MS.gene051975 | MS.gene91778 | 0.826878 | 2.13E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene91778 | 0.82335 | 1.45E-53 | -1.69E-46 |
| MS.gene052118 | MS.gene91778 | 0.804866 | 1.76E-49 | -1.69E-46 |
| MS.gene052168 | MS.gene91778 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene91778 | 0.842177 | 3.03E-58 | -1.69E-46 |
| MS.gene052463 | MS.gene91778 | 0.850915 | 1.25E-60 | -1.69E-46 |
| MS.gene052514 | MS.gene91778 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene91778 | 0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene052518 | MS.gene91778 | 0.813204 | 2.88E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene91778 | 0.825806 | 3.83E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene91778 | 0.856906 | 2.34E-62 | -1.69E-46 |
| MS.gene052717 | MS.gene91778 | 0.808056 | 3.74E-50 | -1.69E-46 |
| MS.gene052775 | MS.gene91778 | 0.827754 | 1.31E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene91778 | 0.802575 | 5.26E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene91778 | 0.8345 | 2.89E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene91778 | 0.839317 | 1.70E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene91778 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene91778 | 0.828437 | 9.00E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene91778 | -0.826432 | 2.72E-54 | -1.69E-46 |
| MS.gene053296 | MS.gene91778 | 0.803136 | 4.03E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene91778 | 0.818845 | 1.58E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene91778 | 0.806318 | 8.72E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene91778 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene91778 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene91778 | 0.819119 | 1.37E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene91778 | 0.82045 | 6.81E-53 | -1.69E-46 |
| MS.gene054641 | MS.gene91778 | 0.828015 | 1.14E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene91778 | 0.826978 | 2.02E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene91778 | 0.836625 | 8.39E-57 | -1.69E-46 |
| MS.gene054893 | MS.gene91778 | 0.834422 | 3.03E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene91778 | 0.824613 | 7.34E-54 | -1.69E-46 |
| MS.gene055386 | MS.gene91778 | 0.875675 | 2.56E-68 | -1.69E-46 |
| MS.gene055513 | MS.gene91778 | 0.890891 | 6.54E-74 | -1.69E-46 |
| MS.gene055724 | MS.gene91778 | 0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene91778 | 0.827238 | 1.75E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene91778 | 0.82508 | 5.70E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene91778 | 0.819691 | 1.02E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene91778 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene91778 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene91778 | 0.82853 | 8.54E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene91778 | 0.802416 | 5.67E-49 | -1.69E-46 |
| MS.gene056519 | MS.gene91778 | 0.828277 | 9.83E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene91778 | 0.850069 | 2.15E-60 | -1.69E-46 |
| MS.gene056831 | MS.gene91778 | 0.82602 | 3.41E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene91778 | 0.857261 | 1.84E-62 | -1.69E-46 |
| MS.gene056973 | MS.gene91778 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene057034 | MS.gene91778 | 0.848015 | 8.02E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene91778 | 0.839564 | 1.47E-57 | -1.69E-46 |
| MS.gene057329 | MS.gene91778 | 0.802133 | 6.48E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene91778 | 0.814181 | 1.76E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene91778 | 0.848405 | 6.26E-60 | -1.69E-46 |
| MS.gene058649 | MS.gene91778 | 0.838818 | 2.29E-57 | -1.69E-46 |
| MS.gene058668 | MS.gene91778 | 0.820752 | 5.81E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene91778 | 0.804459 | 2.14E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene91778 | 0.813748 | 2.19E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene91778 | 0.802087 | 6.63E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene91778 | 0.809683 | 1.68E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene91778 | 0.824564 | 7.54E-54 | -1.69E-46 |
| MS.gene059634 | MS.gene91778 | 0.840141 | 1.04E-57 | -1.69E-46 |
| MS.gene059774 | MS.gene91778 | 0.806988 | 6.29E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene91778 | 0.820801 | 5.66E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene91778 | -0.852137 | 5.62E-61 | -1.69E-46 |
| MS.gene059965 | MS.gene91778 | 0.824735 | 6.87E-54 | -1.69E-46 |
| MS.gene060435 | MS.gene91778 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene060522 | MS.gene91778 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene91778 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene91778 | 0.840128 | 1.05E-57 | -1.69E-46 |
| MS.gene060785 | MS.gene91778 | 0.818694 | 1.72E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene91778 | 0.823454 | 1.37E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene91778 | 0.854307 | 1.34E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene91778 | 0.84337 | 1.46E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene91778 | 0.862403 | 5.19E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene91778 | 0.845062 | 5.13E-59 | -1.69E-46 |
| MS.gene061160 | MS.gene91778 | 0.829309 | 5.53E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene91778 | 0.848341 | 6.52E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91778.t1 | MTR_8g006895 | 98.237 | 624 | 10 | 1 | 1 | 623 | 1 | 624 | 0.0 | 1274 |
| MS.gene91778.t1 | MTR_8g006895 | 98.077 | 624 | 10 | 2 | 1 | 623 | 1 | 623 | 0.0 | 1267 |
| MS.gene91778.t1 | MTR_4g087320 | 24.069 | 403 | 220 | 13 | 54 | 436 | 233 | 569 | 6.20e-20 | 94.4 |
| MS.gene91778.t1 | MTR_4g087320 | 24.198 | 343 | 177 | 12 | 54 | 376 | 233 | 512 | 2.21e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91778.t1 | AT1G02120 | 47.154 | 615 | 251 | 12 | 19 | 621 | 38 | 590 | 4.90e-177 | 515 |
| MS.gene91778.t1 | AT1G02120 | 54.157 | 421 | 163 | 5 | 19 | 431 | 38 | 436 | 2.11e-149 | 440 |
| MS.gene91778.t1 | AT1G02120 | 53.383 | 399 | 156 | 5 | 19 | 409 | 38 | 414 | 2.16e-137 | 407 |
| MS.gene91778.t1 | AT3G59660 | 31.387 | 137 | 73 | 3 | 49 | 169 | 227 | 358 | 5.90e-12 | 68.9 |
| MS.gene91778.t1 | AT3G59660 | 31.387 | 137 | 73 | 3 | 49 | 169 | 227 | 358 | 6.59e-12 | 68.9 |
Find 125 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGTACATCTCATCTTTA+AGG | 0.146037 | 8.3:+81138160 | None:intergenic |
| TCCTATAAACTCGATATTTC+TGG | 0.151087 | 8.3:+81143881 | None:intergenic |
| TGGCATCCTCAAGAGAAATT+TGG | 0.189881 | 8.3:-81144552 | MS.gene91778:CDS |
| TCTAAGAAAACTATATTTAG+AGG | 0.263700 | 8.3:-81142113 | MS.gene91778:intron |
| CGTAAAAGATGCGGCGATAA+AGG | 0.277145 | 8.3:-81144773 | MS.gene91778:intron |
| CCAGGAAAACATACTTATTC+AGG | 0.290582 | 8.3:-81149880 | MS.gene91778:intron |
| GCAACACACGTATAAGCTTC+TGG | 0.294393 | 8.3:+81144998 | None:intergenic |
| TCAGCGCTGGATTGCTTCTC+TGG | 0.303106 | 8.3:+81145945 | None:intergenic |
| AAACGATGCCAGAGCAATTA+TGG | 0.303999 | 8.3:-81148423 | MS.gene91778:CDS |
| TCTGGAACAACTATCAATAT+AGG | 0.304457 | 8.3:+81145963 | None:intergenic |
| CACAATTAAAATCTTCAATT+AGG | 0.313779 | 8.3:+81149907 | None:intergenic |
| CAGACTTCAAGTGTGCTTCA+TGG | 0.317114 | 8.3:-81144572 | MS.gene91778:CDS |
| TAAAGGTTGAAGACTTCTTT+TGG | 0.322771 | 8.3:-81144838 | MS.gene91778:CDS |
| TGTTGCAGAATCAATATTTC+CGG | 0.323318 | 8.3:-81144981 | MS.gene91778:intron |
| TTTCAATTCTTCCGATATTC+CGG | 0.339873 | 8.3:-81152303 | MS.gene91778:intron |
| TTGGGAGTTCCATCCATTAC+TGG | 0.354910 | 8.3:-81145993 | MS.gene91778:CDS |
| AACAAATGTAGTTGACAAAT+AGG | 0.368964 | 8.3:+81149662 | None:intergenic |
| GGCATCCTCAAGAGAAATTT+GGG | 0.376671 | 8.3:-81144551 | MS.gene91778:CDS |
| AACGGGATGTTGCGGCGATT+CGG | 0.381474 | 8.3:+81152385 | None:intergenic |
| TTCCAGTTGCAACCCAATCT+AGG | 0.382014 | 8.3:+81145885 | None:intergenic |
| TCCGTACGCCTGTGATTTCA+TGG | 0.382462 | 8.3:+81148706 | None:intergenic |
| AAAAGAAAGCTGCATCTTAC+GGG | 0.389632 | 8.3:-81142156 | MS.gene91778:CDS |
| AGAAGAACGTACCGGAATAT+CGG | 0.390648 | 8.3:+81152292 | None:intergenic |
| TGTTACTTCATCCAGTCATT+TGG | 0.393585 | 8.3:-81143700 | MS.gene91778:intron |
| GTTGCAGCAGTTTAGCATAC+TGG | 0.394477 | 8.3:-81138304 | MS.gene91778:intron |
| CCCCTAGATTGGGTTGCAAC+TGG | 0.396364 | 8.3:-81145887 | MS.gene91778:CDS |
| CAAAAGAAAGCTGCATCTTA+CGG | 0.397265 | 8.3:-81142157 | MS.gene91778:CDS |
| CTAACGCACCTTCTTGCTTC+CGG | 0.398045 | 8.3:+81148638 | None:intergenic |
| AAGAGTTTGCGACAAAGATT+AGG | 0.401400 | 8.3:-81139060 | MS.gene91778:CDS |
| GAAGCAATCCAGCGCTGAAC+AGG | 0.403247 | 8.3:-81145940 | MS.gene91778:CDS |
| GAAGAAGGAGAAGGTTGAAC+GGG | 0.406043 | 8.3:+81152368 | None:intergenic |
| GTACGGAGGGCAAAGACAGC+TGG | 0.410767 | 8.3:-81148690 | MS.gene91778:CDS |
| AATATCGAGTTTATAGGAAC+AGG | 0.413740 | 8.3:-81143876 | MS.gene91778:intron |
| TCCAGAAATATCGAGTTTAT+AGG | 0.414688 | 8.3:-81143882 | MS.gene91778:CDS |
| AACACTGTGAATAGCATTGA+TGG | 0.415243 | 8.3:+81139141 | None:intergenic |
| AAACCCATTCTCTTGGCTGC+TGG | 0.418508 | 8.3:+81146186 | None:intergenic |
| CTGGAACAACTATCAATATA+GGG | 0.421815 | 8.3:+81145964 | None:intergenic |
| TCCTTCGGACATAGCGTGGC+TGG | 0.422739 | 8.3:-81138199 | MS.gene91778:CDS |
| TCCTTCTCCGATGGCTTCTA+CGG | 0.425635 | 8.3:-81152420 | None:intergenic |
| CAACACACGTATAAGCTTCT+GGG | 0.427188 | 8.3:+81144999 | None:intergenic |
| TCTTCACTCTTTAATGCATC+CGG | 0.449257 | 8.3:+81151311 | None:intergenic |
| GGATATAATCTCAATGGCAT+TGG | 0.463282 | 8.3:+81148659 | None:intergenic |
| GATATAATCTCAATGGCATT+GGG | 0.467582 | 8.3:+81148660 | None:intergenic |
| CATATGTATATGTTGAGGTC+TGG | 0.468954 | 8.3:+81138272 | None:intergenic |
| CTCAGCAACCTGTTCAGCGC+TGG | 0.470180 | 8.3:+81145932 | None:intergenic |
| TAGGAGAGGAATTGGAAGAA+TGG | 0.473064 | 8.3:+81152330 | None:intergenic |
| TCCAGTTGCAACCCAATCTA+GGG | 0.475238 | 8.3:+81145886 | None:intergenic |
| CAGGATCAAAGTAATCCTAC+AGG | 0.477554 | 8.3:-81139184 | MS.gene91778:CDS |
| TAATTCTATTTGCAAAGACT+TGG | 0.484156 | 8.3:-81146012 | MS.gene91778:CDS |
| CTGCTGTTCCATAATTGCTC+TGG | 0.485873 | 8.3:+81148415 | None:intergenic |
| TAATGACGGATGGTTGAGAC+AGG | 0.487160 | 8.3:-81148447 | MS.gene91778:CDS |
| ATCCTATTCATAAAGTCTAC+AGG | 0.488047 | 8.3:+81138243 | None:intergenic |
| ACAAGAAAGTAATCTGCATA+AGG | 0.488155 | 8.3:+81143645 | None:intergenic |
| GCAAACTCTTTGAACAAAGA+TGG | 0.490281 | 8.3:+81139073 | None:intergenic |
| GTTTAGCATACTGGTGCTCT+TGG | 0.495145 | 8.3:-81138295 | MS.gene91778:CDS |
| CTCCTGTAGACTTTATGAAT+AGG | 0.495569 | 8.3:-81138245 | MS.gene91778:CDS |
| TAAAAGCTTCATCACGGGAT+AGG | 0.501721 | 8.3:+81148477 | None:intergenic |
| AATGCCATTGAGATTATATC+CGG | 0.504654 | 8.3:-81148657 | MS.gene91778:CDS |
| AGAAACTTCAGAAGGATCTC+AGG | 0.506426 | 8.3:-81139203 | MS.gene91778:CDS |
| AAATCACTCACTTCTTCTTG+TGG | 0.514279 | 8.3:+81151266 | None:intergenic |
| TATAGGGTCTTCTCCAGTAA+TGG | 0.517274 | 8.3:+81145980 | None:intergenic |
| GAGTCCAGCAGCCAAGAGAA+TGG | 0.519387 | 8.3:-81146190 | MS.gene91778:CDS |
| CACTCACTTCTTCTTGTGGA+AGG | 0.524080 | 8.3:+81151270 | None:intergenic |
| AGTCCAGCAGCCAAGAGAAT+GGG | 0.524134 | 8.3:-81146189 | MS.gene91778:CDS |
| CAGAGCAATTATGGAACAGC+AGG | 0.528502 | 8.3:-81148414 | MS.gene91778:intron |
| CTCGATATTTCTGGACCTCA+TGG | 0.533083 | 8.3:+81143890 | None:intergenic |
| TTCCCAGGGGCTGTGGAATG+TGG | 0.534141 | 8.3:-81142198 | MS.gene91778:intron |
| AATTCTATTTGCAAAGACTT+GGG | 0.539596 | 8.3:-81146011 | MS.gene91778:CDS |
| GATGTAGTTTGCCTCCCTGT+AGG | 0.539808 | 8.3:+81139169 | None:intergenic |
| AGCTTCATCACGGGATAGGA+AGG | 0.541458 | 8.3:+81148481 | None:intergenic |
| TTTGATAGAGAAGCAAAGAC+GGG | 0.542139 | 8.3:-81139226 | MS.gene91778:CDS |
| TGGAGTGACTAGAAGTCCTT+CGG | 0.543558 | 8.3:-81138214 | MS.gene91778:CDS |
| TGTAGACTTTATGAATAGGA+TGG | 0.553506 | 8.3:-81138241 | MS.gene91778:CDS |
| ATTGTTAACTACAGCAGCAA+TGG | 0.554452 | 8.3:+81139261 | None:intergenic |
| GGAAGAATGGTTACGATCAA+CGG | 0.558320 | 8.3:+81152343 | None:intergenic |
| TAATCTTAAAAGCTTCATCA+CGG | 0.558595 | 8.3:+81148471 | None:intergenic |
| TGCAGATTACTTTCTTGTCG+AGG | 0.560152 | 8.3:-81143640 | MS.gene91778:intron |
| TTAAGATTATTAATGACGGA+TGG | 0.566095 | 8.3:-81148457 | MS.gene91778:CDS |
| TACGGAGGGCAAAGACAGCT+GGG | 0.568120 | 8.3:-81148689 | MS.gene91778:CDS |
| GGGATGTTGCGGCGATTCGG+CGG | 0.568369 | 8.3:+81152388 | None:intergenic |
| GCTTCCGGATATAATCTCAA+TGG | 0.570356 | 8.3:+81148653 | None:intergenic |
| ATCAATGCTATTCACAGTGT+TGG | 0.570435 | 8.3:-81139139 | MS.gene91778:CDS |
| CCTTAAAGATGAGATGTACA+TGG | 0.574672 | 8.3:-81138160 | MS.gene91778:CDS |
| ATTCCTCTCCATGAAATCAC+AGG | 0.577715 | 8.3:-81148714 | MS.gene91778:CDS |
| AATCTTAAAAGCTTCATCAC+GGG | 0.579201 | 8.3:+81148472 | None:intergenic |
| GGAAGAAGGAGAAGGTTGAA+CGG | 0.582618 | 8.3:+81152367 | None:intergenic |
| GCATACCCAAATTTCTCTTG+AGG | 0.583068 | 8.3:+81144546 | None:intergenic |
| GGGTCTTCTCCAGTAATGGA+TGG | 0.584010 | 8.3:+81145984 | None:intergenic |
| TCCATGAAATCACAGGCGTA+CGG | 0.592268 | 8.3:-81148707 | MS.gene91778:CDS |
| TCCAGCCACGCTATGTCCGA+AGG | 0.593074 | 8.3:+81138198 | None:intergenic |
| TTACGATCAACGGAGGAAGA+AGG | 0.594450 | 8.3:+81152353 | None:intergenic |
| ATTGGGTTGCAACTGGAATG+AGG | 0.595612 | 8.3:-81145880 | MS.gene91778:CDS |
| GATTATATCCGGAAGCAAGA+AGG | 0.598222 | 8.3:-81148646 | MS.gene91778:intron |
| CTTACGGGTATATGTGAATG+TGG | 0.600531 | 8.3:-81142141 | MS.gene91778:CDS |
| TGAAATCACAGGCGTACGGA+GGG | 0.610233 | 8.3:-81148703 | MS.gene91778:CDS |
| TATGTGTGAGTCAGGAACAA+AGG | 0.610638 | 8.3:-81146035 | MS.gene91778:intron |
| GTAAAGACGCTTATGCATTG+TGG | 0.610779 | 8.3:-81139548 | MS.gene91778:CDS |
| AGATGTACATGGTTGAGACT+AGG | 0.612127 | 8.3:-81138149 | MS.gene91778:CDS |
| ATGAAATCACAGGCGTACGG+AGG | 0.615317 | 8.3:-81148704 | MS.gene91778:CDS |
| ATTGCTGCTGTAGTTAACAA+TGG | 0.623599 | 8.3:-81139259 | MS.gene91778:CDS |
| GAAGGTTGAACGGGATGTTG+CGG | 0.624022 | 8.3:+81152377 | None:intergenic |
| GTGAATAGCATTGATGGCAT+CGG | 0.632862 | 8.3:+81139147 | None:intergenic |
| GGGTTCATATGTATATGTTG+AGG | 0.633315 | 8.3:+81138267 | None:intergenic |
| GCAACAGCCGTAGAAGCCAT+CGG | 0.639195 | 8.3:+81152413 | None:intergenic |
| GAAGTCCTTCGGACATAGCG+TGG | 0.641739 | 8.3:-81138203 | MS.gene91778:CDS |
| GAAAAGAACCTTGTAAAACA+AGG | 0.642003 | 8.3:-81139406 | MS.gene91778:intron |
| TTTATGAATAGGATGGACAA+TGG | 0.645980 | 8.3:-81138234 | MS.gene91778:CDS |
| TCAACGGAGGAAGAAGGAGA+AGG | 0.648130 | 8.3:+81152359 | None:intergenic |
| TTATGCATTGTGGATAAACA+TGG | 0.651302 | 8.3:-81139538 | MS.gene91778:intron |
| TTCTGATGTACTCTACAATG+AGG | 0.652306 | 8.3:-81146140 | MS.gene91778:CDS |
| AAGACGGGAGAAACTTCAGA+AGG | 0.663194 | 8.3:-81139211 | MS.gene91778:CDS |
| AACACACGTATAAGCTTCTG+GGG | 0.665125 | 8.3:+81145000 | None:intergenic |
| CCAGTTGCAACCCAATCTAG+GGG | 0.667272 | 8.3:+81145887 | None:intergenic |
| AGACTAGGCTTGAAAGAATG+CGG | 0.670699 | 8.3:-81138134 | MS.gene91778:CDS |
| CTATTCATAAAGTCTACAGG+AGG | 0.672906 | 8.3:+81138246 | None:intergenic |
| GAGTCTTATCGTAAAAGATG+CGG | 0.676267 | 8.3:-81144782 | MS.gene91778:CDS |
| AGGATCAAAGTAATCCTACA+GGG | 0.678381 | 8.3:-81139183 | MS.gene91778:CDS |
| ACGCCTGTGATTTCATGGAG+AGG | 0.680013 | 8.3:+81148711 | None:intergenic |
| TATTCATAAAGTCTACAGGA+GGG | 0.680454 | 8.3:+81138247 | None:intergenic |
| AAAATCGGGTGGCTGCCATG+AGG | 0.716133 | 8.3:-81143905 | MS.gene91778:CDS |
| AGAATGGTTACGATCAACGG+AGG | 0.730287 | 8.3:+81152346 | None:intergenic |
| AATGACGGATGGTTGAGACA+GGG | 0.735151 | 8.3:-81148446 | MS.gene91778:CDS |
| CAGTTGCAACCCAATCTAGG+GGG | 0.736768 | 8.3:+81145888 | None:intergenic |
| GGGTTGCAACTGGAATGAGG+AGG | 0.737069 | 8.3:-81145877 | MS.gene91778:CDS |
| ATCAAAGTAATCCTACAGGG+AGG | 0.739664 | 8.3:-81139180 | MS.gene91778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 81138083 | 81152432 | 81138083 | ID=MS.gene91778 |
| chr8.3 | mRNA | 81138083 | 81152432 | 81138083 | ID=MS.gene91778.t1;Parent=MS.gene91778 |
| chr8.3 | exon | 81152304 | 81152432 | 81152304 | ID=MS.gene91778.t1.exon1;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81152304 | 81152432 | 81152304 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81151277 | 81151336 | 81151277 | ID=MS.gene91778.t1.exon2;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81151277 | 81151336 | 81151277 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81149881 | 81149931 | 81149881 | ID=MS.gene91778.t1.exon3;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81149881 | 81149931 | 81149881 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81149630 | 81149695 | 81149630 | ID=MS.gene91778.t1.exon4;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81149630 | 81149695 | 81149630 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81148647 | 81148742 | 81148647 | ID=MS.gene91778.t1.exon5;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81148647 | 81148742 | 81148647 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81148415 | 81148516 | 81148415 | ID=MS.gene91778.t1.exon6;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81148415 | 81148516 | 81148415 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81146124 | 81146224 | 81146124 | ID=MS.gene91778.t1.exon7;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81146124 | 81146224 | 81146124 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81145859 | 81146043 | 81145859 | ID=MS.gene91778.t1.exon8;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81145859 | 81146043 | 81145859 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81144982 | 81145022 | 81144982 | ID=MS.gene91778.t1.exon9;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81144982 | 81145022 | 81144982 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81144774 | 81144861 | 81144774 | ID=MS.gene91778.t1.exon10;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81144774 | 81144861 | 81144774 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81144505 | 81144591 | 81144505 | ID=MS.gene91778.t1.exon11;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81144505 | 81144591 | 81144505 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81143877 | 81143931 | 81143877 | ID=MS.gene91778.t1.exon12;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81143877 | 81143931 | 81143877 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81143641 | 81143707 | 81143641 | ID=MS.gene91778.t1.exon13;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81143641 | 81143707 | 81143641 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81142114 | 81142213 | 81142114 | ID=MS.gene91778.t1.exon14;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81142114 | 81142213 | 81142114 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81139539 | 81139600 | 81139539 | ID=MS.gene91778.t1.exon15;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81139539 | 81139600 | 81139539 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81139407 | 81139446 | 81139407 | ID=MS.gene91778.t1.exon16;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81139407 | 81139446 | 81139407 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81138988 | 81139292 | 81138988 | ID=MS.gene91778.t1.exon17;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81138988 | 81139292 | 81138988 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| chr8.3 | exon | 81138083 | 81138319 | 81138083 | ID=MS.gene91778.t1.exon18;Parent=MS.gene91778.t1 |
| chr8.3 | CDS | 81138083 | 81138319 | 81138083 | ID=cds.MS.gene91778.t1;Parent=MS.gene91778.t1 |
| Gene Sequence |
| Protein sequence |
