Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99858.t1 | XP_013465643.1 | 99 | 102 | 1 | 0 | 1 | 102 | 269 | 370 | 4.30E-43 | 183.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99858.t1 | Q5KQN0 | 83.9 | 87 | 14 | 0 | 16 | 102 | 278 | 364 | 4.1e-34 | 145.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99858.t1 | A0A072VCB3 | 99.0 | 102 | 1 | 0 | 1 | 102 | 269 | 370 | 3.1e-43 | 183.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene99858 | 0.824427 | 8.12E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene99858 | 0.812247 | 4.67E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene99858 | 0.845775 | 3.29E-59 | -1.69E-46 |
| MS.gene049283 | MS.gene99858 | 0.81042 | 1.16E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene99858 | 0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene99858 | 0.834342 | 3.17E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene99858 | 0.83454 | 2.83E-56 | -1.69E-46 |
| MS.gene050073 | MS.gene99858 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene99858 | 0.80974 | 1.63E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene99858 | 0.823231 | 1.55E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene99858 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene99858 | 0.822946 | 1.80E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene99858 | 0.824783 | 6.70E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene99858 | 0.819011 | 1.45E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene99858 | 0.80842 | 3.12E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene99858 | 0.824536 | 7.65E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene99858 | 0.869999 | 2.03E-66 | -1.69E-46 |
| MS.gene051332 | MS.gene99858 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene99858 | 0.861233 | 1.18E-63 | -1.69E-46 |
| MS.gene051800 | MS.gene99858 | 0.8452 | 4.71E-59 | -1.69E-46 |
| MS.gene052016 | MS.gene99858 | 0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene99858 | 0.833576 | 4.93E-56 | -1.69E-46 |
| MS.gene052118 | MS.gene99858 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene99858 | -0.812901 | 3.36E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene99858 | 0.816715 | 4.79E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene99858 | 0.836509 | 8.97E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene99858 | 0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene99858 | 0.808878 | 2.49E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene99858 | 0.834367 | 3.12E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene99858 | 0.816158 | 6.39E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene99858 | 0.814897 | 1.22E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene99858 | 0.808602 | 2.86E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene99858 | 0.811524 | 6.70E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene99858 | 0.811237 | 7.74E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene99858 | 0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene99858 | 0.824731 | 6.89E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene99858 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene053296 | MS.gene99858 | 0.83472 | 2.55E-56 | -1.69E-46 |
| MS.gene053620 | MS.gene99858 | 0.802185 | 6.33E-49 | -1.69E-46 |
| MS.gene053621 | MS.gene99858 | 0.824569 | 7.52E-54 | -1.69E-46 |
| MS.gene054178 | MS.gene99858 | 0.804526 | 2.07E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene99858 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene99858 | 0.808072 | 3.71E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene99858 | 0.810648 | 1.04E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene99858 | 0.8491 | 4.02E-60 | -1.69E-46 |
| MS.gene054641 | MS.gene99858 | 0.824492 | 7.84E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene99858 | 0.860615 | 1.83E-63 | -1.69E-46 |
| MS.gene054892 | MS.gene99858 | 0.843789 | 1.13E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene99858 | 0.842078 | 3.22E-58 | -1.69E-46 |
| MS.gene055227 | MS.gene99858 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene99858 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene055386 | MS.gene99858 | 0.805824 | 1.11E-49 | -1.69E-46 |
| MS.gene05539 | MS.gene99858 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene99858 | 0.826065 | 3.33E-54 | -1.69E-46 |
| MS.gene05552 | MS.gene99858 | 0.802953 | 4.39E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene99858 | 0.806004 | 1.02E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene99858 | 0.82132 | 4.30E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene99858 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene99858 | 0.817469 | 3.25E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene99858 | 0.801127 | 1.04E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene99858 | 0.842137 | 3.11E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene99858 | 0.814907 | 1.21E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene99858 | 0.816773 | 4.65E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene99858 | 0.842071 | 3.23E-58 | -1.69E-46 |
| MS.gene05690 | MS.gene99858 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene056973 | MS.gene99858 | 0.807905 | 4.02E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene99858 | 0.829233 | 5.77E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene99858 | 0.815448 | 9.20E-52 | -1.69E-46 |
| MS.gene057371 | MS.gene99858 | 0.804507 | 2.09E-49 | -1.69E-46 |
| MS.gene057611 | MS.gene99858 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene99858 | 0.805038 | 1.62E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene99858 | 0.834152 | 3.54E-56 | -1.69E-46 |
| MS.gene058289 | MS.gene99858 | 0.821294 | 4.36E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene99858 | 0.806699 | 7.25E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene99858 | 0.807733 | 4.37E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene99858 | 0.800929 | 1.14E-48 | -1.69E-46 |
| MS.gene058862 | MS.gene99858 | 0.815198 | 1.05E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene99858 | 0.820514 | 6.59E-53 | -1.69E-46 |
| MS.gene059438 | MS.gene99858 | 0.803677 | 3.11E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene99858 | 0.826281 | 2.96E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene99858 | 0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene99858 | 0.812716 | 3.68E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene99858 | -0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene99858 | 0.828346 | 9.46E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene99858 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene99858 | 0.830559 | 2.74E-55 | -1.69E-46 |
| MS.gene060522 | MS.gene99858 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene99858 | 0.844103 | 9.30E-59 | -1.69E-46 |
| MS.gene060840 | MS.gene99858 | 0.803412 | 3.53E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene99858 | 0.831096 | 2.03E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene99858 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene99858 | 0.812412 | 4.29E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene99858 | 0.811994 | 5.30E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene99858 | 0.802939 | 4.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99858.t1 | MTR_2g105640 | 99.020 | 102 | 1 | 0 | 1 | 102 | 269 | 370 | 7.61e-63 | 197 |
| MS.gene99858.t1 | MTR_3g082180 | 61.053 | 95 | 37 | 0 | 8 | 102 | 268 | 362 | 4.47e-33 | 119 |
| MS.gene99858.t1 | MTR_4g016720 | 55.446 | 101 | 38 | 1 | 9 | 102 | 267 | 367 | 1.69e-30 | 112 |
| MS.gene99858.t1 | MTR_5g070330 | 58.416 | 101 | 41 | 1 | 3 | 102 | 258 | 358 | 6.75e-29 | 107 |
| MS.gene99858.t1 | MTR_7g068380 | 65.823 | 79 | 27 | 0 | 24 | 102 | 289 | 367 | 8.01e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99858.t1 | AT3G13320 | 73.196 | 97 | 26 | 0 | 6 | 102 | 273 | 369 | 1.64e-41 | 141 |
| MS.gene99858.t1 | AT1G55730 | 72.165 | 97 | 27 | 0 | 6 | 102 | 273 | 369 | 1.78e-41 | 141 |
| MS.gene99858.t1 | AT1G55730 | 72.165 | 97 | 27 | 0 | 6 | 102 | 273 | 369 | 1.78e-41 | 141 |
| MS.gene99858.t1 | AT1G55720 | 69.072 | 97 | 30 | 0 | 6 | 102 | 281 | 377 | 9.70e-40 | 137 |
| MS.gene99858.t1 | AT1G55720 | 69.072 | 97 | 30 | 0 | 6 | 102 | 281 | 377 | 1.11e-39 | 137 |
| MS.gene99858.t1 | AT5G01490 | 54.369 | 103 | 46 | 1 | 1 | 102 | 271 | 373 | 3.13e-29 | 108 |
| MS.gene99858.t1 | AT5G01490 | 54.369 | 103 | 46 | 1 | 1 | 102 | 271 | 373 | 3.13e-29 | 108 |
| MS.gene99858.t1 | AT3G51860 | 65.823 | 79 | 27 | 0 | 24 | 102 | 293 | 371 | 5.71e-28 | 105 |
| MS.gene99858.t1 | AT3G51860 | 65.823 | 79 | 27 | 0 | 24 | 102 | 293 | 371 | 6.46e-28 | 105 |
| MS.gene99858.t1 | AT2G38170 | 52.336 | 107 | 43 | 2 | 3 | 102 | 264 | 369 | 2.83e-27 | 103 |
| MS.gene99858.t1 | AT2G38170 | 52.336 | 107 | 43 | 2 | 3 | 102 | 264 | 369 | 2.90e-27 | 103 |
| MS.gene99858.t1 | AT2G38170 | 48.864 | 88 | 37 | 2 | 3 | 83 | 264 | 350 | 9.92e-18 | 77.0 |
Find 20 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATCGGAAGCGATAATT+TGG | 0.177448 | 2.1:+301728 | MS.gene99858:CDS |
| ATACCACAAACATCGATATC+TGG | 0.329138 | 2.1:-303199 | None:intergenic |
| TGCTATCATGTTTGCTGTAA+AGG | 0.362095 | 2.1:+303058 | MS.gene99858:CDS |
| GTCATCTTGCTTCCAATTGT+AGG | 0.377243 | 2.1:+303014 | MS.gene99858:CDS |
| TTTCCACAGGATATCACAAT+TGG | 0.399751 | 2.1:+303155 | MS.gene99858:intron |
| TCTGCGGCATTTCCTACAAT+TGG | 0.429263 | 2.1:-303026 | None:intergenic |
| ATCACAATTGGAGTTGCTGT+TGG | 0.467118 | 2.1:+303167 | MS.gene99858:CDS |
| ACTGTACAGCTATACCTCTA+TGG | 0.490233 | 2.1:-301803 | None:intergenic |
| GTATGGGTATCAGTGTTGTC+TGG | 0.492249 | 2.1:+301766 | MS.gene99858:CDS |
| AGAACTTGAGTTAACTCAAT+CGG | 0.503816 | 2.1:+301714 | MS.gene99858:CDS |
| AACCCAGATATCGATGTTTG+TGG | 0.505182 | 2.1:+303196 | MS.gene99858:CDS |
| AGATATCGATGTTTGTGGTA+TGG | 0.534307 | 2.1:+303201 | MS.gene99858:CDS |
| TACCACAAACATCGATATCT+GGG | 0.548709 | 2.1:-303198 | None:intergenic |
| ATACCTTGTGGATGCCATAG+AGG | 0.575475 | 2.1:+301789 | MS.gene99858:CDS |
| TGAATCATTGAATATGTCAG+TGG | 0.638115 | 2.1:+302980 | MS.gene99858:CDS |
| AAGTGAAAACTCTGACGAGG+AGG | 0.660035 | 2.1:+301690 | MS.gene99858:CDS |
| AGTGTTGTCTGGATACCTTG+TGG | 0.676735 | 2.1:+301777 | MS.gene99858:CDS |
| ATACCTCTATGGCATCCACA+AGG | 0.684822 | 2.1:-301792 | None:intergenic |
| TACAAGTGAAAACTCTGACG+AGG | 0.708110 | 2.1:+301687 | MS.gene99858:CDS |
| GATAGCACTTGCATGCTCTG+CGG | 0.744200 | 2.1:-303042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTACCCAAAATTAT+GGG | - | chr2.1:302045-302064 | None:intergenic | 15.0% |
| !! | GTATTCATGGAATAAAATAT+AGG | - | chr2.1:303109-303128 | None:intergenic | 20.0% |
| !!! | CTTTTATTTACCCAAAATTA+TGG | - | chr2.1:302046-302065 | None:intergenic | 20.0% |
| !!! | TCATTTATACCCATAATTTT+GGG | + | chr2.1:302033-302052 | MS.gene99858:intron | 20.0% |
| ! | AAAGTCATGAAAAGGAAATA+TGG | + | chr2.1:302722-302741 | MS.gene99858:intron | 25.0% |
| ! | AATACTGTTTAATCCGTTAA+TGG | + | chr2.1:303124-303143 | MS.gene99858:intron | 25.0% |
| ! | ATACTTTCTGATAGATCATT+AGG | - | chr2.1:302437-302456 | None:intergenic | 25.0% |
| ! | TCGTAAATTTAATCTGTTGT+TGG | + | chr2.1:302507-302526 | MS.gene99858:intron | 25.0% |
| ! | TCTGAATAGTACCAAAAATA+TGG | - | chr2.1:302154-302173 | None:intergenic | 25.0% |
| !! | AATACTCTGTTTTATAGCAT+GGG | - | chr2.1:302677-302696 | None:intergenic | 25.0% |
| !! | ATCATTAGGATTTTCTATGT+TGG | - | chr2.1:302423-302442 | None:intergenic | 25.0% |
| !! | CTCATTTATACCCATAATTT+TGG | + | chr2.1:302032-302051 | MS.gene99858:intron | 25.0% |
| !! | GCTATAAAACAGAGTATTAT+TGG | + | chr2.1:302679-302698 | MS.gene99858:intron | 25.0% |
| !! | GTAAATAAAAGAAGCATGTA+TGG | + | chr2.1:302055-302074 | MS.gene99858:intron | 25.0% |
| !! | TAATACTCTGTTTTATAGCA+TGG | - | chr2.1:302678-302697 | None:intergenic | 25.0% |
| !!! | GCATTGAGTTTTTAAGAATT+GGG | + | chr2.1:302221-302240 | MS.gene99858:intron | 25.0% |
| AAAAGGAAATATGGAAACAG+AGG | + | chr2.1:302731-302750 | MS.gene99858:intron | 30.0% | |
| AGAACTTGAGTTAACTCAAT+CGG | + | chr2.1:301714-301733 | MS.gene99858:CDS | 30.0% | |
| AGAATGAATAGAAGTTTCAG+TGG | - | chr2.1:302885-302904 | None:intergenic | 30.0% | |
| ATACCAGGACCAAAAATAAA+AGG | - | chr2.1:302600-302619 | None:intergenic | 30.0% | |
| CCAAAAATAAAAGGCTGATA+AGG | - | chr2.1:302591-302610 | None:intergenic | 30.0% | |
| GAGTATTATTGGAAATCATG+AGG | + | chr2.1:302690-302709 | MS.gene99858:intron | 30.0% | |
| GGAAAAGTTGAATCCATTAA+CGG | - | chr2.1:303140-303159 | None:intergenic | 30.0% | |
| TACTATTCAGAAGAAACGAT+GGG | + | chr2.1:302163-302182 | MS.gene99858:intron | 30.0% | |
| TGAATCATTGAATATGTCAG+TGG | + | chr2.1:302980-302999 | MS.gene99858:CDS | 30.0% | |
| TTAAGAATTGGGTGAAATAG+TGG | + | chr2.1:302232-302251 | MS.gene99858:intron | 30.0% | |
| TTATTGAAATCTTAGTGAGC+TGG | - | chr2.1:302381-302400 | None:intergenic | 30.0% | |
| !! | AACGGATTAAACAGTATTCA+TGG | - | chr2.1:303122-303141 | None:intergenic | 30.0% |
| !! | AGGATTCTAAAGTCATGAAA+AGG | + | chr2.1:302714-302733 | MS.gene99858:intron | 30.0% |
| !! | AGTGATGATGACTTTTGATA+TGG | + | chr2.1:302199-302218 | MS.gene99858:intron | 30.0% |
| !! | GATCTATCAGAAAGTATTTG+TGG | + | chr2.1:302440-302459 | MS.gene99858:intron | 30.0% |
| !! | GGCATTGAGTTTTTAAGAAT+TGG | + | chr2.1:302220-302239 | MS.gene99858:intron | 30.0% |
| !!! | AATTTGGCTTGCAATTTTGA+CGG | + | chr2.1:301744-301763 | MS.gene99858:CDS | 30.0% |
| !!! | CCTTATCAGCCTTTTATTTT+TGG | + | chr2.1:302588-302607 | MS.gene99858:intron | 30.0% |
| !!! | TTAAGCTTTTGTTATTCTCG+TGG | + | chr2.1:301848-301867 | MS.gene99858:intron | 30.0% |
| AACATGAAGCGAACACTAAA+AGG | - | chr2.1:301889-301908 | None:intergenic | 35.0% | |
| AACCATTTACACCAGTTGAA+GGG | + | chr2.1:302124-302143 | MS.gene99858:intron | 35.0% | |
| AAGATGCTTATGGATCAACA+AGG | - | chr2.1:302932-302951 | None:intergenic | 35.0% | |
| ACACGATTCTATGGTGTAAT+TGG | - | chr2.1:301950-301969 | None:intergenic | 35.0% | |
| AGATATCGATGTTTGTGGTA+TGG | + | chr2.1:303201-303220 | MS.gene99858:CDS | 35.0% | |
| ATACCACAAACATCGATATC+TGG | - | chr2.1:303202-303221 | None:intergenic | 35.0% | |
| ATTACACCATAGAATCGTGT+CGG | + | chr2.1:301950-301969 | MS.gene99858:intron | 35.0% | |
| ATTATTGGAAATCATGAGGC+AGG | + | chr2.1:302694-302713 | MS.gene99858:intron | 35.0% | |
| GTACTATTCAGAAGAAACGA+TGG | + | chr2.1:302162-302181 | MS.gene99858:intron | 35.0% | |
| GTATCATGTAACAGTGTGTT+AGG | - | chr2.1:302095-302114 | None:intergenic | 35.0% | |
| TAACCATTTACACCAGTTGA+AGG | + | chr2.1:302123-302142 | MS.gene99858:intron | 35.0% | |
| TACCACAAACATCGATATCT+GGG | - | chr2.1:303201-303220 | None:intergenic | 35.0% | |
| TCTAGATCTAGATCAGATCA+AGG | + | chr2.1:302340-302359 | MS.gene99858:intron | 35.0% | |
| TTTCCACAGGATATCACAAT+TGG | + | chr2.1:303155-303174 | MS.gene99858:intron | 35.0% | |
| ! | TGAAGGGAGTTCCATATTTT+TGG | + | chr2.1:302140-302159 | MS.gene99858:intron | 35.0% |
| ! | TTGATCTTTGACTTTGACCA+AGG | - | chr2.1:301995-302014 | None:intergenic | 35.0% |
| !! | AATGGATTCAACTTTTCCAC+AGG | + | chr2.1:303142-303161 | MS.gene99858:intron | 35.0% |
| !! | TGCTATCATGTTTGCTGTAA+AGG | + | chr2.1:303058-303077 | MS.gene99858:CDS | 35.0% |
| !!! | ATTTTTGGTCCTGGTATGAA+TGG | + | chr2.1:302603-302622 | MS.gene99858:intron | 35.0% |
| AAAAGGCTGATAAGGAGAAG+AGG | - | chr2.1:302583-302602 | None:intergenic | 40.0% | |
| AACCCAGATATCGATGTTTG+TGG | + | chr2.1:303196-303215 | MS.gene99858:CDS | 40.0% | |
| AATATGGAAACAGAGGAGGA+AGG | + | chr2.1:302738-302757 | MS.gene99858:intron | 40.0% | |
| AATATGGAACTCCCTTCAAC+TGG | - | chr2.1:302138-302157 | None:intergenic | 40.0% | |
| ACGAGTCGAAATACAATGTG+TGG | - | chr2.1:302491-302510 | None:intergenic | 40.0% | |
| ACTCCAATTGTGATATCCTG+TGG | - | chr2.1:303161-303180 | None:intergenic | 40.0% | |
| ACTGTACAGCTATACCTCTA+TGG | - | chr2.1:301806-301825 | None:intergenic | 40.0% | |
| AGGAAATATGGAAACAGAGG+AGG | + | chr2.1:302734-302753 | MS.gene99858:intron | 40.0% | |
| ATATGGAAACAGAGGAGGAA+GGG | + | chr2.1:302739-302758 | MS.gene99858:intron | 40.0% | |
| ATCACAATTGGAGTTGCTGT+TGG | + | chr2.1:303167-303186 | MS.gene99858:CDS | 40.0% | |
| CAATGTCTATGGGTTTACCT+TGG | + | chr2.1:301975-301994 | MS.gene99858:intron | 40.0% | |
| CCAGTAACACAAGATGCTTA+TGG | - | chr2.1:302942-302961 | None:intergenic | 40.0% | |
| CCATAAGCATCTTGTGTTAC+TGG | + | chr2.1:302939-302958 | MS.gene99858:intron | 40.0% | |
| CTCAATCGGAAGCGATAATT+TGG | + | chr2.1:301728-301747 | MS.gene99858:CDS | 40.0% | |
| GGAGTTCTTCATTGTCAACA+AGG | - | chr2.1:302911-302930 | None:intergenic | 40.0% | |
| GTAAAGGACAAGCTAGTAAG+TGG | + | chr2.1:303074-303093 | MS.gene99858:intron | 40.0% | |
| GTCATCTTGCTTCCAATTGT+AGG | + | chr2.1:303014-303033 | MS.gene99858:CDS | 40.0% | |
| TACAAGTGAAAACTCTGACG+AGG | + | chr2.1:301687-301706 | MS.gene99858:CDS | 40.0% | |
| TTACCCACCCAAAAACTACA+CGG | + | chr2.1:302799-302818 | MS.gene99858:intron | 40.0% | |
| TTCAGAAGAAACGATGGGAT+TGG | + | chr2.1:302168-302187 | MS.gene99858:intron | 40.0% | |
| TTTGGGTGGGTAAGGTTTAT+GGG | - | chr2.1:302792-302811 | None:intergenic | 40.0% | |
| ! | TCTGTTGCCGTGTAGTTTTT+GGG | - | chr2.1:302809-302828 | None:intergenic | 40.0% |
| ! | TGTGTTACTGGTCTATTGCA+GGG | + | chr2.1:302951-302970 | MS.gene99858:intron | 40.0% |
| ! | TTCTGTTGCCGTGTAGTTTT+TGG | - | chr2.1:302810-302829 | None:intergenic | 40.0% |
| ! | TTGTGTTACTGGTCTATTGC+AGG | + | chr2.1:302950-302969 | MS.gene99858:intron | 40.0% |
| ! | TTTTATAGCATGGGCCAATG+TGG | - | chr2.1:302668-302687 | None:intergenic | 40.0% |
| !! | GCTTGCAATTTTGACGGTAT+GGG | + | chr2.1:301750-301769 | MS.gene99858:CDS | 40.0% |
| !! | GTTGTTGGTTAAGCTGCTTT+TGG | + | chr2.1:302522-302541 | MS.gene99858:intron | 40.0% |
| !! | TTTTGGGTGGGTAAGGTTTA+TGG | - | chr2.1:302793-302812 | None:intergenic | 40.0% |
| !!! | CAGCCTTTTATTTTTGGTCC+TGG | + | chr2.1:302594-302613 | MS.gene99858:intron | 40.0% |
| AAGTGAAAACTCTGACGAGG+AGG | + | chr2.1:301690-301709 | MS.gene99858:CDS | 45.0% | |
| AGTGTTGTCTGGATACCTTG+TGG | + | chr2.1:301777-301796 | MS.gene99858:CDS | 45.0% | |
| ATACCTCTATGGCATCCACA+AGG | - | chr2.1:301795-301814 | None:intergenic | 45.0% | |
| ATACCTTGTGGATGCCATAG+AGG | + | chr2.1:301789-301808 | MS.gene99858:CDS | 45.0% | |
| CTCCCTTCAACTGGTGTAAA+TGG | - | chr2.1:302129-302148 | None:intergenic | 45.0% | |
| GTATGGGTATCAGTGTTGTC+TGG | + | chr2.1:301766-301785 | MS.gene99858:CDS | 45.0% | |
| TCTGCGGCATTTCCTACAAT+TGG | - | chr2.1:303029-303048 | None:intergenic | 45.0% | |
| TGTGTTAGGTGATGTTGAGC+TGG | - | chr2.1:302081-302100 | None:intergenic | 45.0% | |
| ! | ATTGCACCGACACGATTCTA+TGG | - | chr2.1:301959-301978 | None:intergenic | 45.0% |
| ! | TTGGGTGAAATAGTGGAGAG+TGG | + | chr2.1:302239-302258 | MS.gene99858:intron | 45.0% |
| !! | GGCTTGCAATTTTGACGGTA+TGG | + | chr2.1:301749-301768 | MS.gene99858:CDS | 45.0% |
| !!! | GTGTAGTTTTTGGGTGGGTA+AGG | - | chr2.1:302800-302819 | None:intergenic | 45.0% |
| !!! | TTGCCGTGTAGTTTTTGGGT+GGG | - | chr2.1:302805-302824 | None:intergenic | 45.0% |
| AACTCCTGCCACATCCACAT+TGG | + | chr2.1:302651-302670 | MS.gene99858:intron | 50.0% | |
| GATAGCACTTGCATGCTCTG+CGG | - | chr2.1:303045-303064 | None:intergenic | 50.0% | |
| GTCCAGAGTCCATTCATACC+AGG | - | chr2.1:302615-302634 | None:intergenic | 50.0% | |
| GTGGGTAAGGTTTATGGGCA+AGG | - | chr2.1:302787-302806 | None:intergenic | 50.0% | |
| ! | CGTGTCGGTGCAATGTCTAT+GGG | + | chr2.1:301965-301984 | MS.gene99858:intron | 50.0% |
| ! | GATCAAGGACTAGCAGCTCT+AGG | + | chr2.1:302355-302374 | MS.gene99858:intron | 50.0% |
| ! | GTCCTGGTATGAATGGACTC+TGG | + | chr2.1:302610-302629 | MS.gene99858:intron | 50.0% |
| ! | TCGTGTCGGTGCAATGTCTA+TGG | + | chr2.1:301964-301983 | MS.gene99858:intron | 50.0% |
| !! | GTTGCCGTGTAGTTTTTGGG+TGG | - | chr2.1:302806-302825 | None:intergenic | 50.0% |
| AGCATGGGCCAATGTGGATG+TGG | - | chr2.1:302662-302681 | None:intergenic | 55.0% | |
| GGACTCTGGACCATTCCCAA+GGG | + | chr2.1:302624-302643 | MS.gene99858:intron | 55.0% | |
| GGAGTTGCTTCCCTTGGGAA+TGG | - | chr2.1:302637-302656 | None:intergenic | 55.0% | |
| TGGACTCTGGACCATTCCCA+AGG | + | chr2.1:302623-302642 | MS.gene99858:intron | 55.0% | |
| TGGCAGGAGTTGCTTCCCTT+GGG | - | chr2.1:302642-302661 | None:intergenic | 55.0% | |
| GTGGCAGGAGTTGCTTCCCT+TGG | - | chr2.1:302643-302662 | None:intergenic | 60.0% | |
| TGGGCCAATGTGGATGTGGC+AGG | - | chr2.1:302658-302677 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 301679 | 303229 | 301679 | ID=MS.gene99858 |
| chr2.1 | mRNA | 301679 | 303229 | 301679 | ID=MS.gene99858.t1;Parent=MS.gene99858 |
| chr2.1 | exon | 301679 | 301810 | 301679 | ID=MS.gene99858.t1.exon1;Parent=MS.gene99858.t1 |
| chr2.1 | CDS | 301679 | 301810 | 301679 | ID=cds.MS.gene99858.t1;Parent=MS.gene99858.t1 |
| chr2.1 | exon | 302972 | 303088 | 302972 | ID=MS.gene99858.t1.exon2;Parent=MS.gene99858.t1 |
| chr2.1 | CDS | 302972 | 303088 | 302972 | ID=cds.MS.gene99858.t1;Parent=MS.gene99858.t1 |
| chr2.1 | exon | 303164 | 303229 | 303164 | ID=MS.gene99858.t1.exon3;Parent=MS.gene99858.t1 |
| chr2.1 | CDS | 303164 | 303229 | 303164 | ID=cds.MS.gene99858.t1;Parent=MS.gene99858.t1 |
| Gene Sequence |
| Protein sequence |
