AlfalfaGEDB | MS.gene73245

M. sativa cultivar XinJiangDaYe / MS.gene73245

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73245.t1	XP_013454915.1	99.4	160	1	0	1	160	434	593	1.90E-82	315.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73245.t1	Q9M331	60.8	148	55	2	1	145	437	584	1.6e-45	183.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73245.t1	A0A072UIQ6	99.4	160	1	0	1	160	434	593	1.4e-82	315.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene73245	0.840448	8.64E-58	-1.69E-46
MS.gene049368	MS.gene73245	0.829931	3.91E-55	-1.69E-46
MS.gene049499	MS.gene73245	0.837673	4.52E-57	-1.69E-46
MS.gene049786	MS.gene73245	0.823606	1.27E-53	-1.69E-46
MS.gene049801	MS.gene73245	0.806049	9.93E-50	-1.69E-46
MS.gene04998	MS.gene73245	0.805077	1.59E-49	-1.69E-46
MS.gene049983	MS.gene73245	0.857521	1.54E-62	-1.69E-46
MS.gene050359	MS.gene73245	0.8143	1.65E-51	-1.69E-46
MS.gene050414	MS.gene73245	0.808114	3.63E-50	-1.69E-46
MS.gene050646	MS.gene73245	0.80539	1.37E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73245.t1	MTR_4g019580	99.375	160	1	0	1	160	434	593	9.17e-110	324
MS.gene73245.t1	MTR_7g065080	72.050	161	38	2	1	160	342	496	3.41e-76	235
MS.gene73245.t1	MTR_7g065080	72.050	161	38	2	1	160	429	583	2.17e-75	235
MS.gene73245.t1	MTR_3g069440	63.291	158	53	2	1	154	429	585	1.80e-61	199
MS.gene73245.t1	MTR_3g069500	61.688	154	50	3	1	153	431	576	5.97e-58	190
MS.gene73245.t1	MTR_3g069420	56.688	157	63	2	1	153	430	585	2.92e-56	186
MS.gene73245.t1	MTR_4g033325	45.070	142	73	2	1	137	285	426	6.37e-40	139
MS.gene73245.t1	MTR_4g033325	45.070	142	73	2	1	137	311	452	1.02e-39	139
MS.gene73245.t1	MTR_4g033325	45.070	142	73	2	1	137	409	550	2.75e-39	139
MS.gene73245.t1	MTR_8g038880	37.888	161	89	2	1	157	411	564	2.97e-39	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73245.t1	AT3G53960	60.265	151	57	2	1	148	437	587	1.68e-57	189
MS.gene73245.t1	AT2G37900	62.857	140	46	2	1	139	356	490	1.45e-53	176
MS.gene73245.t1	AT2G37900	62.857	140	46	2	1	139	435	569	4.87e-53	177
MS.gene73245.t1	AT1G72140	45.775	142	72	2	1	137	412	553	1.84e-39	140
MS.gene73245.t1	AT1G22540	45.890	146	74	2	1	141	412	557	2.35e-39	140
MS.gene73245.t1	AT1G22550	44.828	145	75	2	1	140	419	563	4.79e-37	134
MS.gene73245.t1	AT1G72130	46.324	136	69	2	1	135	282	414	2.04e-36	130
MS.gene73245.t1	AT1G72130	46.324	136	69	2	1	135	282	414	2.04e-36	130
MS.gene73245.t1	AT1G72130	45.652	138	71	2	1	137	400	534	9.83e-36	130
MS.gene73245.t1	AT5G14940	39.286	140	82	2	1	137	403	542	1.05e-33	124

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Find 29 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGGAAAAGTTGGTT+TGG	0.487631	4.1:+78651683	MS.gene73245:CDS
AAACCAATAATTAGAAACTG+TGG	0.668309	4.1:-78651503	None:intergenic
AACAATGATAGTAGCAGCTT+TGG	0.355709	4.1:+78651403	None:intergenic
AAGAGTGATGATGGTGGAGC+AGG	0.423866	4.1:+78651854	MS.gene73245:CDS
AGAGTGATGATGGTGGAGCA+GGG	0.483075	4.1:+78651855	MS.gene73245:CDS
AGATTTGAATAGTAGTCGTT+TGG	0.415547	4.1:+78651709	MS.gene73245:CDS
ATCATGTGACAAGTAAAAGT+GGG	0.599655	4.1:+78651669	MS.gene73245:CDS
ATTGAAAGTGAACCATGCGA+TGG	0.617576	4.1:-78651461	None:intergenic
CAAGTAAAAGTGGGAAAAGT+TGG	0.354008	4.1:+78651678	MS.gene73245:CDS
CAGTTTCTAATTATTGGTTT+TGG	0.332505	4.1:+78651506	MS.gene73245:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTTGAATAGTAGTCGTT+TGG	+	chr4.1:78651709-78651728	MS.gene73245:CDS	30.0%
ATCATGTGACAAGTAAAAGT+GGG	+	chr4.1:78651669-78651688	MS.gene73245:CDS	30.0%
GAATGTGCAAAATAATGTTG+TGG	+	chr4.1:78651814-78651833	MS.gene73245:CDS	30.0%
GTCGTTTGGATAAATTCTAT+TGG	+	chr4.1:78651723-78651742	MS.gene73245:CDS	30.0%
CAAGTAAAAGTGGGAAAAGT+TGG	+	chr4.1:78651678-78651697	MS.gene73245:CDS	35.0%
GATCATGTGACAAGTAAAAG+TGG	+	chr4.1:78651668-78651687	MS.gene73245:CDS	35.0%
TTCTCATTGAATCAGGAACT+TGG	-	chr4.1:78651574-78651593	None:intergenic	35.0%
ATTGAAAGTGAACCATGCGA+TGG	-	chr4.1:78651464-78651483	None:intergenic	40.0%
CCTGATTCAATGAGAAGCTT+GGG	+	chr4.1:78651578-78651597	MS.gene73245:CDS	40.0%
GCGCCACAGTTTCTAATTAT+TGG	+	chr4.1:78651500-78651519	MS.gene73245:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	78651407	78651889	78651407	ID=MS.gene73245
chr4.1	mRNA	78651407	78651889	78651407	ID=MS.gene73245.t1;Parent=MS.gene73245
chr4.1	exon	78651407	78651889	78651407	ID=MS.gene73245.t1.exon1;Parent=MS.gene73245.t1
chr4.1	CDS	78651407	78651889	78651407	ID=cds.MS.gene73245.t1;Parent=MS.gene73245.t1

Gene Sequence

>MS.gene73245

ATGATAGTAGCAGCTTTGGTCGAGAAAAAAAGGCTTAAAGTTGTTGAGATGAATCCATCGCATGGTTCACTTTCAATGAGTGTTTTTTGGTTAGCGCCACAGTTTCTAATTATTGGTTTTGGCGACGGTTTGGCGCTTGTTGGTTTACAAGAATATTTCTATGACCAAGTTCCTGATTCAATGAGAAGCTTGGGAATTGGACTTTACCTTAGTGTGATTGGAGCTGCAAATTTTCTAAGTAGTTTGTTGATAACAATTGTTGATCATGTGACAAGTAAAAGTGGGAAAAGTTGGTTTGGTGAAGATTTGAATAGTAGTCGTTTGGATAAATTCTATTGGCTATTGGCAGCTATAACTACATTGAGTGTGTTTGTGTTTGTGCTCTTTGCTCAAAGGTATACTTATAAGAATGTGCAAAATAATGTTGTGGCTGATTGTTATGATGGAAAGAGTGATGATGGTGGAGCAGGGAGAATGGTGTGA

Protein sequence

>MS.gene73245.t1

MIVAALVEKKRLKVVEMNPSHGSLSMSVFWLAPQFLIIGFGDGLALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAANFLSSLLITIVDHVTSKSGKSWFGEDLNSSRLDKFYWLLAAITTLSVFVFVLFAQRYTYKNVQNNVVADCYDGKSDDGGAGRMV