Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34937.t1 | RHN42369.1 | 94.3 | 895 | 37 | 3 | 1 | 889 | 73 | 959 | 0.00E+00 | 1600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34937.t1 | Q9CAC4 | 36.8 | 666 | 273 | 26 | 235 | 889 | 221 | 749 | 8.5e-64 | 246.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34937.t1 | A0A396GMJ9 | 94.3 | 895 | 37 | 3 | 1 | 889 | 73 | 959 | 0.0e+00 | 1600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene34937 | 0.860066 | 2.68E-63 | -1.69E-46 |
| MS.gene04918 | MS.gene34937 | 0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene049227 | MS.gene34937 | 0.810229 | 1.28E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene34937 | 0.812759 | 3.61E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene34937 | 0.813346 | 2.68E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene34937 | 0.815607 | 8.48E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene34937 | 0.815686 | 8.14E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene34937 | 0.861184 | 1.23E-63 | -1.69E-46 |
| MS.gene049585 | MS.gene34937 | 0.804821 | 1.80E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene34937 | 0.836669 | 8.17E-57 | -1.69E-46 |
| MS.gene049744 | MS.gene34937 | 0.818227 | 2.19E-52 | -1.69E-46 |
| MS.gene049801 | MS.gene34937 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene34937 | 0.844909 | 5.64E-59 | -1.69E-46 |
| MS.gene049983 | MS.gene34937 | 0.832336 | 1.00E-55 | -1.69E-46 |
| MS.gene050224 | MS.gene34937 | 0.832081 | 1.16E-55 | -1.69E-46 |
| MS.gene050238 | MS.gene34937 | 0.822863 | 1.89E-53 | -1.69E-46 |
| MS.gene050257 | MS.gene34937 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene050258 | MS.gene34937 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene34937 | 0.81701 | 4.12E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene34937 | 0.841683 | 4.10E-58 | -1.69E-46 |
| MS.gene050551 | MS.gene34937 | 0.841871 | 3.65E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene34937 | 0.859441 | 4.13E-63 | -1.69E-46 |
| MS.gene050654 | MS.gene34937 | 0.837268 | 5.74E-57 | -1.69E-46 |
| MS.gene050657 | MS.gene34937 | 0.811659 | 6.27E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene34937 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene34937 | 0.806684 | 7.30E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene34937 | 0.850196 | 1.99E-60 | -1.69E-46 |
| MS.gene051332 | MS.gene34937 | 0.80297 | 4.36E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene34937 | 0.821065 | 4.92E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene34937 | 0.815997 | 6.94E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene34937 | 0.839024 | 2.03E-57 | -1.69E-46 |
| MS.gene051852 | MS.gene34937 | 0.822497 | 2.30E-53 | -1.69E-46 |
| MS.gene052016 | MS.gene34937 | 0.867999 | 9.04E-66 | -1.69E-46 |
| MS.gene052037 | MS.gene34937 | 0.839611 | 1.43E-57 | -1.69E-46 |
| MS.gene052118 | MS.gene34937 | 0.865588 | 5.30E-65 | -1.69E-46 |
| MS.gene052307 | MS.gene34937 | 0.852001 | 6.15E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene34937 | 0.849161 | 3.86E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene34937 | 0.813549 | 2.42E-51 | -1.69E-46 |
| MS.gene052514 | MS.gene34937 | 0.832667 | 8.29E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene34937 | 0.812229 | 4.71E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene34937 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene052534 | MS.gene34937 | 0.800115 | 1.68E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene34937 | 0.872565 | 2.88E-67 | -1.69E-46 |
| MS.gene052681 | MS.gene34937 | 0.808035 | 3.77E-50 | -1.69E-46 |
| MS.gene052775 | MS.gene34937 | 0.803121 | 4.05E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene34937 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene052855 | MS.gene34937 | 0.813561 | 2.40E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene34937 | 0.836994 | 6.75E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene34937 | 0.824106 | 9.66E-54 | -1.69E-46 |
| MS.gene05350 | MS.gene34937 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene053620 | MS.gene34937 | 0.821568 | 3.77E-53 | -1.69E-46 |
| MS.gene053621 | MS.gene34937 | 0.810519 | 1.11E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene34937 | 0.852688 | 3.92E-61 | -1.69E-46 |
| MS.gene05423 | MS.gene34937 | 0.808313 | 3.29E-50 | -1.69E-46 |
| MS.gene054489 | MS.gene34937 | 0.81359 | 2.37E-51 | -1.69E-46 |
| MS.gene05454 | MS.gene34937 | 0.803906 | 2.79E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene34937 | 0.826678 | 2.38E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene34937 | 0.833625 | 4.79E-56 | -1.69E-46 |
| MS.gene054641 | MS.gene34937 | 0.868572 | 5.91E-66 | -1.69E-46 |
| MS.gene054651 | MS.gene34937 | 0.840246 | 9.76E-58 | -1.69E-46 |
| MS.gene054892 | MS.gene34937 | 0.851856 | 6.76E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene34937 | 0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene055229 | MS.gene34937 | 0.813044 | 3.12E-51 | -1.69E-46 |
| MS.gene055231 | MS.gene34937 | 0.811324 | 7.41E-51 | -1.69E-46 |
| MS.gene055327 | MS.gene34937 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene05539 | MS.gene34937 | 0.820438 | 6.86E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene34937 | 0.834865 | 2.34E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene34937 | 0.853001 | 3.19E-61 | -1.69E-46 |
| MS.gene05552 | MS.gene34937 | 0.808264 | 3.37E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene34937 | 0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene34937 | 0.82893 | 6.84E-55 | -1.69E-46 |
| MS.gene056507 | MS.gene34937 | 0.849958 | 2.32E-60 | -1.69E-46 |
| MS.gene056519 | MS.gene34937 | 0.825068 | 5.73E-54 | -1.69E-46 |
| MS.gene056677 | MS.gene34937 | 0.834706 | 2.57E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene34937 | 0.825517 | 4.49E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene34937 | 0.823857 | 1.11E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene34937 | 0.861206 | 1.21E-63 | -1.69E-46 |
| MS.gene056973 | MS.gene34937 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene34937 | 0.822454 | 2.35E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene34937 | 0.818912 | 1.53E-52 | -1.69E-46 |
| MS.gene057132 | MS.gene34937 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene34937 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene34937 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene34937 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene34937 | 0.843914 | 1.05E-58 | -1.69E-46 |
| MS.gene058159 | MS.gene34937 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene34937 | 0.831892 | 1.29E-55 | -1.69E-46 |
| MS.gene058292 | MS.gene34937 | 0.814776 | 1.30E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene34937 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene34937 | 0.838447 | 2.86E-57 | -1.69E-46 |
| MS.gene058647 | MS.gene34937 | 0.819908 | 9.07E-53 | -1.69E-46 |
| MS.gene058649 | MS.gene34937 | 0.807144 | 5.83E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene34937 | 0.807483 | 4.94E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene34937 | 0.82804 | 1.12E-54 | -1.69E-46 |
| MS.gene058836 | MS.gene34937 | 0.80625 | 9.01E-50 | -1.69E-46 |
| MS.gene058919 | MS.gene34937 | 0.81056 | 1.09E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene34937 | 0.852738 | 3.79E-61 | -1.69E-46 |
| MS.gene059438 | MS.gene34937 | 0.804521 | 2.08E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene34937 | 0.846458 | 2.14E-59 | -1.69E-46 |
| MS.gene05952 | MS.gene34937 | 0.814169 | 1.77E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene34937 | 0.817769 | 2.78E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene34937 | 0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene34937 | 0.819236 | 1.29E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene34937 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene34937 | -0.806282 | 8.87E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene34937 | 0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene34937 | 0.81701 | 4.12E-52 | -1.69E-46 |
| MS.gene060380 | MS.gene34937 | 0.810739 | 9.92E-51 | -1.69E-46 |
| MS.gene060413 | MS.gene34937 | 0.802831 | 4.66E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene34937 | 0.843441 | 1.40E-58 | -1.69E-46 |
| MS.gene060522 | MS.gene34937 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene34937 | 0.853397 | 2.45E-61 | -1.69E-46 |
| MS.gene060697 | MS.gene34937 | 0.819186 | 1.33E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene34937 | 0.824345 | 8.49E-54 | -1.69E-46 |
| MS.gene060785 | MS.gene34937 | 0.87566 | 2.59E-68 | -1.69E-46 |
| MS.gene060932 | MS.gene34937 | 0.844748 | 6.24E-59 | -1.69E-46 |
| MS.gene060933 | MS.gene34937 | 0.850063 | 2.16E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene34937 | 0.82356 | 1.30E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene34937 | 0.841777 | 3.87E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene34937 | 0.801206 | 1.00E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene34937 | 0.872304 | 3.52E-67 | -1.69E-46 |
| MS.gene061160 | MS.gene34937 | 0.810718 | 1.00E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene34937 | 0.840204 | 1.00E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34937.t1 | MTR_5g078300 | 48.319 | 476 | 197 | 16 | 433 | 884 | 519 | 969 | 5.59e-94 | 318 |
| MS.gene34937.t1 | MTR_1g070350 | 30.864 | 405 | 233 | 9 | 491 | 882 | 496 | 866 | 1.07e-34 | 143 |
| MS.gene34937.t1 | MTR_7g115350 | 39.773 | 264 | 126 | 7 | 465 | 714 | 481 | 725 | 6.76e-32 | 134 |
| MS.gene34937.t1 | MTR_0168s0060 | 48.592 | 142 | 71 | 1 | 484 | 625 | 290 | 429 | 2.60e-22 | 102 |
| MS.gene34937.t1 | MTR_7g107000 | 44.231 | 104 | 58 | 0 | 530 | 633 | 70 | 173 | 4.56e-17 | 85.5 |
| MS.gene34937.t1 | MTR_4g011540 | 50.515 | 97 | 48 | 0 | 530 | 626 | 289 | 385 | 5.58e-16 | 82.0 |
| MS.gene34937.t1 | MTR_4g011550 | 50.549 | 91 | 45 | 0 | 534 | 624 | 281 | 371 | 7.12e-16 | 82.4 |
| MS.gene34937.t1 | MTR_4g107310 | 56.863 | 102 | 44 | 0 | 524 | 625 | 326 | 427 | 4.79e-15 | 79.3 |
| MS.gene34937.t1 | MTR_4g093150 | 38.000 | 100 | 62 | 0 | 530 | 629 | 76 | 175 | 1.03e-14 | 74.3 |
| MS.gene34937.t1 | MTR_1g054835 | 39.423 | 104 | 63 | 0 | 530 | 633 | 65 | 168 | 2.59e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34937.t1 | AT1G70750 | 41.642 | 670 | 235 | 27 | 235 | 889 | 221 | 749 | 2.07e-105 | 343 |
| MS.gene34937.t1 | AT5G16720 | 44.499 | 409 | 161 | 12 | 482 | 879 | 310 | 663 | 5.70e-77 | 265 |
| MS.gene34937.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 515 | 637 | 602 | 722 | 4.28e-29 | 125 |
| MS.gene34937.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 515 | 637 | 602 | 722 | 4.28e-29 | 125 |
| MS.gene34937.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.06e-28 | 124 |
| MS.gene34937.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.06e-28 | 124 |
| MS.gene34937.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.06e-28 | 124 |
| MS.gene34937.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 494 | 726 | 862 | 1089 | 1.06e-28 | 124 |
| MS.gene34937.t1 | AT1G74830 | 62.136 | 103 | 39 | 0 | 523 | 625 | 298 | 400 | 2.77e-26 | 114 |
| MS.gene34937.t1 | AT1G18990 | 64.356 | 101 | 36 | 0 | 523 | 623 | 297 | 397 | 1.11e-23 | 106 |
| MS.gene34937.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 514 | 630 | 204 | 325 | 1.33e-20 | 97.4 |
| MS.gene34937.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 514 | 630 | 204 | 325 | 1.33e-20 | 97.4 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 6.37e-19 | 90.5 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 6.37e-19 | 90.5 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 6.37e-19 | 90.5 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 5 | 178 | 6.37e-19 | 90.5 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.95e-19 | 90.9 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.95e-19 | 90.9 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.95e-19 | 90.9 |
| MS.gene34937.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 504 | 670 | 53 | 226 | 6.95e-19 | 90.9 |
| MS.gene34937.t1 | AT1G04890 | 49.123 | 114 | 56 | 1 | 511 | 624 | 97 | 208 | 5.48e-18 | 87.8 |
| MS.gene34937.t1 | AT5G06560 | 38.710 | 124 | 69 | 1 | 527 | 643 | 71 | 194 | 2.89e-16 | 83.6 |
| MS.gene34937.t1 | AT4G13160 | 54.255 | 94 | 43 | 0 | 530 | 623 | 117 | 210 | 3.10e-16 | 80.5 |
| MS.gene34937.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 530 | 626 | 18 | 114 | 5.06e-12 | 68.9 |
| MS.gene34937.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 530 | 626 | 18 | 114 | 5.06e-12 | 68.9 |
Find 137 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATTCTATGAACATTT+TGG | 0.131796 | 4.1:+16603057 | MS.gene34937:CDS |
| GGTGGTGGAGGAAGGGTTTA+AGG | 0.150734 | 4.1:+16603585 | MS.gene34937:CDS |
| ATTGAGAATTGGCACATTTC+TGG | 0.155393 | 4.1:+16603667 | MS.gene34937:CDS |
| TGAGAAAGTTTGACATAATT+TGG | 0.160478 | 4.1:-16602881 | None:intergenic |
| GATTTCCAAGGTCATGTAAA+TGG | 0.210463 | 4.1:+16605378 | MS.gene34937:CDS |
| ATGTGCCAATTCTCAATTAA+TGG | 0.212111 | 4.1:-16603661 | None:intergenic |
| CTTCAACATTATCATGCTTA+TGG | 0.213927 | 4.1:-16603807 | None:intergenic |
| TGCTGTTGAGATTTCCAAAT+TGG | 0.222106 | 4.1:+16602781 | MS.gene34937:CDS |
| GAATCCACTGCCACAGAAAA+TGG | 0.228593 | 4.1:+16603541 | MS.gene34937:CDS |
| ATTGGAACAGAAAACCAATT+TGG | 0.241967 | 4.1:-16602795 | None:intergenic |
| TAACCATATGCCTTCATCTT+TGG | 0.254980 | 4.1:+16604513 | MS.gene34937:CDS |
| TGTAGATGCTGTGTTATATT+TGG | 0.255018 | 4.1:+16605167 | MS.gene34937:CDS |
| TTCAGCTGAAAAGACCAATT+TGG | 0.270275 | 4.1:+16605557 | MS.gene34937:CDS |
| GATCTTTACAAGCTTGAATT+TGG | 0.276454 | 4.1:+16603331 | MS.gene34937:CDS |
| GACCAATTTGGATAACAAAA+AGG | 0.301928 | 4.1:+16605569 | MS.gene34937:CDS |
| TTTGAGGTTGAACATGATTC+AGG | 0.302213 | 4.1:+16603235 | MS.gene34937:CDS |
| TCATTGGATGGAAGTGTAAT+AGG | 0.334923 | 4.1:+16604652 | MS.gene34937:CDS |
| AATCATTGCCATTGTTTGAT+TGG | 0.338660 | 4.1:-16604797 | None:intergenic |
| AAACAATGGCAATGATTAAC+AGG | 0.343697 | 4.1:+16604803 | MS.gene34937:CDS |
| TTATGAGAGACTACAAGTTT+TGG | 0.357126 | 4.1:+16605620 | MS.gene34937:CDS |
| CAAGAATCAAAAGAAGAAAA+TGG | 0.358623 | 4.1:+16605120 | MS.gene34937:CDS |
| TTCAGCTAGTTTGTGATGAT+TGG | 0.359303 | 4.1:-16602813 | None:intergenic |
| TGATCATCATCCTGAGCCTT+TGG | 0.368054 | 4.1:-16603406 | None:intergenic |
| TCATTGAGAAAAGGGGATAA+AGG | 0.370415 | 4.1:+16605678 | MS.gene34937:CDS |
| CCAATTCTCAATTAATGGTT+CGG | 0.375649 | 4.1:-16603656 | None:intergenic |
| CAGTTTGATTCCTGTTGAAT+TGG | 0.375927 | 4.1:+16603516 | MS.gene34937:CDS |
| CCGAACCATTAATTGAGAAT+TGG | 0.389801 | 4.1:+16603656 | MS.gene34937:CDS |
| CTTGAATTTGGTGTAAAGAA+AGG | 0.400903 | 4.1:+16603343 | MS.gene34937:CDS |
| TCATCCATTTGTTCATGATC+AGG | 0.416480 | 4.1:-16604071 | None:intergenic |
| GGGAATTAAGAAAGTTGAAG+AGG | 0.424276 | 4.1:+16602964 | MS.gene34937:CDS |
| TATGAAGCAGAAGTATCAAT+TGG | 0.425288 | 4.1:+16604038 | MS.gene34937:CDS |
| CAGCATCTACAGGAGTGTTC+TGG | 0.425690 | 4.1:-16605155 | None:intergenic |
| TCCGGAGAAGTCGGTGTGTC+GGG | 0.425794 | 4.1:-16604565 | None:intergenic |
| TCAAGGCCAGGATATTCTTT+CGG | 0.427039 | 4.1:+16604097 | MS.gene34937:CDS |
| TGATGGTGTCAAGGAAACTA+TGG | 0.430020 | 4.1:+16603303 | MS.gene34937:CDS |
| CATTGAGAAAAGGGGATAAA+GGG | 0.434221 | 4.1:+16605679 | MS.gene34937:CDS |
| TACAACATCTACGTGATTTG+AGG | 0.434349 | 4.1:+16605724 | MS.gene34937:CDS |
| CAAATCCATTTACATGACCT+TGG | 0.434429 | 4.1:-16605383 | None:intergenic |
| TTGAATTTGGTGTAAAGAAA+GGG | 0.435192 | 4.1:+16603344 | MS.gene34937:CDS |
| AACATCTTCGTGAAGAGAAC+GGG | 0.438917 | 4.1:+16605319 | MS.gene34937:CDS |
| GTATCAGCTCATTGAGAAAA+GGG | 0.444188 | 4.1:+16605670 | MS.gene34937:CDS |
| TGTGATAAGGTGGTGGAGGA+AGG | 0.445212 | 4.1:+16603577 | MS.gene34937:CDS |
| GTCAGGAACAGAAGATTCAT+TGG | 0.455379 | 4.1:+16604636 | MS.gene34937:CDS |
| GGTTGGTTTAGAAGAGGAGG+TGG | 0.457431 | 4.1:+16605590 | MS.gene34937:CDS |
| GTGGATTCAACCAATTCAAC+AGG | 0.460558 | 4.1:-16603526 | None:intergenic |
| CATGTAAATGGATTTGCAAA+TGG | 0.462247 | 4.1:+16605390 | MS.gene34937:CDS |
| ACTCAACTCTACATCTTCTT+CGG | 0.465186 | 4.1:-16605493 | None:intergenic |
| AGGCTTACCACTATCATGTT+GGG | 0.473913 | 4.1:-16604174 | None:intergenic |
| AATGGATTTGCAAATGGTAA+TGG | 0.475509 | 4.1:+16605396 | MS.gene34937:CDS |
| TGTATCAGCTCATTGAGAAA+AGG | 0.475886 | 4.1:+16605669 | MS.gene34937:CDS |
| CATAGCCTCTTGATCGTACT+CGG | 0.476563 | 4.1:-16604893 | None:intergenic |
| GGAATTAAGAAAGTTGAAGA+GGG | 0.484972 | 4.1:+16602965 | MS.gene34937:CDS |
| ATATCTATTTCCTTCATCCA+TGG | 0.485123 | 4.1:-16602920 | None:intergenic |
| GCTCCAAAGATGAAGGCATA+TGG | 0.485262 | 4.1:-16604516 | None:intergenic |
| TCTCAAAGTTTCCTCTTCCA+AGG | 0.486049 | 4.1:-16603374 | None:intergenic |
| ATTAATAGTGCTGATGGAAA+GGG | 0.486349 | 4.1:+16602944 | MS.gene34937:CDS |
| AATTCCTGATCATGAACAAA+TGG | 0.488142 | 4.1:+16604067 | MS.gene34937:CDS |
| ACTAGAACAGCTGAAAGTAT+TGG | 0.499006 | 4.1:+16605230 | MS.gene34937:CDS |
| GATATGATTAATAGTGCTGA+TGG | 0.500382 | 4.1:+16602938 | MS.gene34937:CDS |
| GAATGATCTTATATTGAAGA+GGG | 0.501695 | 4.1:+16604924 | MS.gene34937:CDS |
| CATTCTTAATTCAAGTGACA+TGG | 0.503402 | 4.1:-16604479 | None:intergenic |
| TGTGCTTGTTCTGTTTGTGA+TGG | 0.503760 | 4.1:+16603286 | MS.gene34937:CDS |
| TGGAATTCATATGTTGTTTG+AGG | 0.507732 | 4.1:+16603219 | MS.gene34937:CDS |
| GATTAATAGTGCTGATGGAA+AGG | 0.508999 | 4.1:+16602943 | MS.gene34937:CDS |
| AACATGGAAAGAATGATGAA+TGG | 0.512778 | 4.1:+16603832 | MS.gene34937:CDS |
| TGATTCAACCTCATTGACCT+TGG | 0.513718 | 4.1:-16603734 | None:intergenic |
| GAACAAATGGATGAGTATCA+AGG | 0.515576 | 4.1:+16604080 | MS.gene34937:CDS |
| AAATCAAAATAGATGTGATA+AGG | 0.515683 | 4.1:+16603564 | MS.gene34937:CDS |
| ATTCATCCACTAGCTCAGTC+AGG | 0.516946 | 4.1:+16604144 | MS.gene34937:CDS |
| TTTAATGCCCAACATGATAG+TGG | 0.517123 | 4.1:+16604167 | MS.gene34937:CDS |
| TTTCTCGAGAGGAAAGGGTC+AGG | 0.520344 | 4.1:+16604619 | MS.gene34937:CDS |
| GGCATATGGTTACTTGCTGT+TGG | 0.523409 | 4.1:-16604502 | None:intergenic |
| GAGGCTTACCACTATCATGT+TGG | 0.523454 | 4.1:-16604175 | None:intergenic |
| AAATATAACACAGCATCTAC+AGG | 0.525131 | 4.1:-16605165 | None:intergenic |
| TTTGAGATTGAATGTTCCAA+AGG | 0.527554 | 4.1:+16603390 | MS.gene34937:CDS |
| TAGATGTGATAAGGTGGTGG+AGG | 0.527709 | 4.1:+16603573 | MS.gene34937:CDS |
| ATTGAATGTTCCAAAGGCTC+AGG | 0.527773 | 4.1:+16603396 | MS.gene34937:CDS |
| AGGGAATGAAACCTTGGAAG+AGG | 0.530134 | 4.1:+16603363 | MS.gene34937:CDS |
| TCCCGACACACCGACTTCTC+CGG | 0.530703 | 4.1:+16604564 | MS.gene34937:CDS |
| TGTAGTTGATGAAGACTCTC+CGG | 0.531114 | 4.1:-16604583 | None:intergenic |
| CTTCGTGAAGAGAACGGGAA+TGG | 0.531529 | 4.1:+16605324 | MS.gene34937:CDS |
| GGAATGTGGAACTCAGAGTC+AGG | 0.532375 | 4.1:+16605745 | MS.gene34937:CDS |
| TCATCAAGAAAGGAAAGTCT+TGG | 0.532515 | 4.1:+16605425 | MS.gene34937:CDS |
| CTCCGGAGAAGTCGGTGTGT+CGG | 0.535211 | 4.1:-16604566 | None:intergenic |
| CGCATTGAAATCTGAAAGGA+AGG | 0.536176 | 4.1:+16604717 | MS.gene34937:CDS |
| TTCTGTTTGTGATGGTGTCA+AGG | 0.536392 | 4.1:+16603294 | MS.gene34937:CDS |
| ATGGAAAGCATCATCAAGAA+AGG | 0.538978 | 4.1:+16605415 | MS.gene34937:CDS |
| TCCTCAGCGTTGCTACAAGA+AGG | 0.546661 | 4.1:-16605069 | None:intergenic |
| GTGATAAGGTGGTGGAGGAA+GGG | 0.547154 | 4.1:+16603578 | MS.gene34937:CDS |
| TCAAAATAGATGTGATAAGG+TGG | 0.548904 | 4.1:+16603567 | MS.gene34937:CDS |
| GGAACAGAAGATTCATTGGA+TGG | 0.549334 | 4.1:+16604640 | MS.gene34937:CDS |
| AATGGATGAGTATCAAGGCC+AGG | 0.550806 | 4.1:+16604085 | MS.gene34937:CDS |
| ATGTGGTGACGTGACCTTCG+AGG | 0.551592 | 4.1:+16604684 | MS.gene34937:CDS |
| TGAATGATCTTATATTGAAG+AGG | 0.551934 | 4.1:+16604923 | MS.gene34937:CDS |
| AGAGAAAGCAGCAATGCAGA+TGG | 0.554976 | 4.1:+16604834 | MS.gene34937:CDS |
| GAACATCTTCGTGAAGAGAA+CGG | 0.557301 | 4.1:+16605318 | MS.gene34937:CDS |
| TCATTAAGCTCCAAAGATGA+AGG | 0.560251 | 4.1:-16604523 | None:intergenic |
| GAACTCAGAGTCAGGAACAT+AGG | 0.561039 | 4.1:+16605753 | MS.gene34937:CDS |
| AAATAGATGTGATAAGGTGG+TGG | 0.561586 | 4.1:+16603570 | MS.gene34937:CDS |
| ATATTGAATTATGAAGATGA+AGG | 0.565833 | 4.1:+16605267 | MS.gene34937:CDS |
| GGAGCTTAATGAGAATGAAG+AGG | 0.572531 | 4.1:+16604534 | MS.gene34937:CDS |
| AAAGAAAGGGAATGAAACCT+TGG | 0.573374 | 4.1:+16603357 | MS.gene34937:CDS |
| AAAGGTTGGTTTAGAAGAGG+AGG | 0.574199 | 4.1:+16605587 | MS.gene34937:CDS |
| AAGCAGAACATGATCAAAGA+AGG | 0.576841 | 4.1:+16603100 | MS.gene34937:CDS |
| GAATGATCAATAACAATGCA+AGG | 0.581504 | 4.1:-16603043 | None:intergenic |
| AGATGCTGTGTTATATTTGG+AGG | 0.584225 | 4.1:+16605170 | MS.gene34937:CDS |
| TTGTATCCGAAAGAATATCC+TGG | 0.587704 | 4.1:-16604103 | None:intergenic |
| GCACATTTCTGGTGATATTG+TGG | 0.590921 | 4.1:+16603678 | MS.gene34937:CDS |
| GATCAATAACAATGCAAGGA+GGG | 0.594685 | 4.1:-16603039 | None:intergenic |
| GAAGAAGATGTAGAGTTGAG+TGG | 0.596653 | 4.1:+16605495 | MS.gene34937:CDS |
| TGAAGACTCTCCGGAGAAGT+CGG | 0.598220 | 4.1:-16604574 | None:intergenic |
| GGTTTGAGATGTTCTTGCTG+TGG | 0.598600 | 4.1:+16602986 | MS.gene34937:CDS |
| TGATAATGTTGAAGTAAACA+TGG | 0.598835 | 4.1:+16603816 | MS.gene34937:CDS |
| GACGATCATGATGATTTCCA+AGG | 0.606183 | 4.1:+16605366 | MS.gene34937:CDS |
| TCTACGTGATTTGAGGAATG+TGG | 0.613878 | 4.1:+16605731 | MS.gene34937:CDS |
| AGCAACGCTGAGGATAGTGA+TGG | 0.616923 | 4.1:+16605078 | MS.gene34937:CDS |
| ATTAAACCTGACTGAGCTAG+TGG | 0.618410 | 4.1:-16604150 | None:intergenic |
| ACAATCCGAGTACGATCAAG+AGG | 0.619408 | 4.1:+16604888 | MS.gene34937:CDS |
| AATCCGCATTGAAATCTGAA+AGG | 0.619756 | 4.1:+16604713 | MS.gene34937:CDS |
| TTTGCAGTATCAGAGAATGA+TGG | 0.624136 | 4.1:+16604861 | MS.gene34937:CDS |
| AAATGTGTCCAAGGTCAATG+AGG | 0.633487 | 4.1:+16603726 | MS.gene34937:CDS |
| GATGATGCATCACAAACTCA+AGG | 0.634789 | 4.1:+16604005 | MS.gene34937:CDS |
| ATCACAAACTCAAGGTGAGG+AGG | 0.642622 | 4.1:+16604013 | MS.gene34937:CDS |
| CAGGAACATAGGAGATCTTG+CGG | 0.643584 | 4.1:+16605764 | MS.gene34937:CDS |
| TATCAGCTCATTGAGAAAAG+GGG | 0.648271 | 4.1:+16605671 | MS.gene34937:CDS |
| TCCTTCTTGTAGCAACGCTG+AGG | 0.650250 | 4.1:+16605068 | MS.gene34937:CDS |
| TGCATCACAAACTCAAGGTG+AGG | 0.653414 | 4.1:+16604010 | MS.gene34937:CDS |
| TCACACACAAGATCTCTACA+AGG | 0.661299 | 4.1:-16602752 | None:intergenic |
| GTAATAGGCGACATAGAATG+TGG | 0.664054 | 4.1:+16604667 | MS.gene34937:CDS |
| CAAAACATTGAAGAAAACAG+TGG | 0.667489 | 4.1:+16603199 | MS.gene34937:CDS |
| TGATCAATAACAATGCAAGG+AGG | 0.675124 | 4.1:-16603040 | None:intergenic |
| TCTTGGCTACTAAAGCAAAG+AGG | 0.677057 | 4.1:+16605442 | MS.gene34937:CDS |
| TGTAGCAGCCAATCAAACAA+TGG | 0.682068 | 4.1:+16604789 | MS.gene34937:CDS |
| TGTTGAAGTTGAGAAAACTG+AGG | 0.695566 | 4.1:+16603447 | MS.gene34937:CDS |
| CTTCCTTTCAGATTTCAATG+CGG | 0.713730 | 4.1:-16604716 | None:intergenic |
| GCAACGCTGAGGATAGTGAT+GGG | 0.723560 | 4.1:+16605079 | MS.gene34937:CDS |
| TGAATCAGATGATATGTGTG+AGG | 0.729118 | 4.1:+16602832 | MS.gene34937:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATATATAAAATGAG+TGG | - | chr4.1:16603924-16603943 | None:intergenic | 15.0% |
| !! | AAAATTTGCAATGTGTAATT+AGG | + | chr4.1:16604418-16604437 | MS.gene34937:intron | 20.0% |
| !! | AAATCAAAATAGATGTGATA+AGG | + | chr4.1:16603564-16603583 | MS.gene34937:CDS | 20.0% |
| !! | ATATTGAATTATGAAGATGA+AGG | + | chr4.1:16605267-16605286 | MS.gene34937:CDS | 20.0% |
| !! | ATGAAAAATTCAAGATGTTT+AGG | - | chr4.1:16603481-16603500 | None:intergenic | 20.0% |
| !!! | TAATTAGAAAGTTCTAAACA+TGG | - | chr4.1:16604362-16604381 | None:intergenic | 20.0% |
| ! | AAAAATTCAAGATGTTTAGG+TGG | - | chr4.1:16603478-16603497 | None:intergenic | 25.0% |
| ! | AAAAGGAAGACAATAAATTG+AGG | - | chr4.1:16604197-16604216 | None:intergenic | 25.0% |
| ! | AATTTGGATAACAAAAAGGT+TGG | + | chr4.1:16605573-16605592 | MS.gene34937:CDS | 25.0% |
| ! | CAAGAATCAAAAGAAGAAAA+TGG | + | chr4.1:16605120-16605139 | MS.gene34937:CDS | 25.0% |
| ! | GAATGATCTTATATTGAAGA+GGG | + | chr4.1:16604924-16604943 | MS.gene34937:CDS | 25.0% |
| ! | GCTTGAAGTATATAGAAAAA+AGG | + | chr4.1:16604975-16604994 | MS.gene34937:CDS | 25.0% |
| ! | TACATTTGCCAACATTATAA+AGG | - | chr4.1:16604273-16604292 | None:intergenic | 25.0% |
| ! | TGAATGATCTTATATTGAAG+AGG | + | chr4.1:16604923-16604942 | MS.gene34937:CDS | 25.0% |
| ! | TGAGAAAGTTTGACATAATT+TGG | - | chr4.1:16602884-16602903 | None:intergenic | 25.0% |
| !! | AAAGTTTAGATGTTTTTCCA+TGG | + | chr4.1:16602903-16602922 | MS.gene34937:CDS | 25.0% |
| !! | CATCTTGAATTTTTCATTCA+TGG | + | chr4.1:16603484-16603503 | MS.gene34937:CDS | 25.0% |
| !! | GAAGATTTTATTCTGGATTT+TGG | + | chr4.1:16603613-16603632 | MS.gene34937:CDS | 25.0% |
| !! | TGATAATGTTGAAGTAAACA+TGG | + | chr4.1:16603816-16603835 | MS.gene34937:CDS | 25.0% |
| !! | TGATCATTCTATGAACATTT+TGG | + | chr4.1:16603057-16603076 | MS.gene34937:CDS | 25.0% |
| !!! | AACCTTTTTGTTATCCAAAT+TGG | - | chr4.1:16605574-16605593 | None:intergenic | 25.0% |
| !!! | AATTGAATTTTCAAGATGTG+AGG | + | chr4.1:16603761-16603780 | MS.gene34937:CDS | 25.0% |
| !!! | ATGATGAATGGATATTTTGA+TGG | + | chr4.1:16603844-16603863 | MS.gene34937:CDS | 25.0% |
| !!! | ATTTTGATTTCCATTTTCTG+TGG | - | chr4.1:16603554-16603573 | None:intergenic | 25.0% |
| !!! | CCTCTAAAACATTTTTATTG+GGG | + | chr4.1:16604323-16604342 | MS.gene34937:intron | 25.0% |
| !!! | GCCTCTAAAACATTTTTATT+GGG | + | chr4.1:16604322-16604341 | MS.gene34937:intron | 25.0% |
| !!! | TGCCTCTAAAACATTTTTAT+TGG | + | chr4.1:16604321-16604340 | MS.gene34937:intron | 25.0% |
| !!! | TTGAATTTGGTGTAAAGAAA+GGG | + | chr4.1:16603344-16603363 | MS.gene34937:CDS | 25.0% |
| AAAAAAGGTTCATGAGTATG+AGG | + | chr4.1:16604990-16605009 | MS.gene34937:CDS | 30.0% | |
| AAACAATGGCAATGATTAAC+AGG | + | chr4.1:16604803-16604822 | MS.gene34937:CDS | 30.0% | |
| AAATATAACACAGCATCTAC+AGG | - | chr4.1:16605168-16605187 | None:intergenic | 30.0% | |
| AACATGGAAAGAATGATGAA+TGG | + | chr4.1:16603832-16603851 | MS.gene34937:CDS | 30.0% | |
| AATCATTGCCATTGTTTGAT+TGG | - | chr4.1:16604800-16604819 | None:intergenic | 30.0% | |
| AATTCCTGATCATGAACAAA+TGG | + | chr4.1:16604067-16604086 | MS.gene34937:CDS | 30.0% | |
| AGAGAATAAAAATGTGTCCA+AGG | + | chr4.1:16603717-16603736 | MS.gene34937:CDS | 30.0% | |
| ATATCTATTTCCTTCATCCA+TGG | - | chr4.1:16602923-16602942 | None:intergenic | 30.0% | |
| ATGTGCCAATTCTCAATTAA+TGG | - | chr4.1:16603664-16603683 | None:intergenic | 30.0% | |
| ATTGGAACAGAAAACCAATT+TGG | - | chr4.1:16602798-16602817 | None:intergenic | 30.0% | |
| CAAAACATTGAAGAAAACAG+TGG | + | chr4.1:16603199-16603218 | MS.gene34937:CDS | 30.0% | |
| CATTCTTAATTCAAGTGACA+TGG | - | chr4.1:16604482-16604501 | None:intergenic | 30.0% | |
| CCAATTCTCAATTAATGGTT+CGG | - | chr4.1:16603659-16603678 | None:intergenic | 30.0% | |
| CTTCAACATTATCATGCTTA+TGG | - | chr4.1:16603810-16603829 | None:intergenic | 30.0% | |
| GAATGATCAATAACAATGCA+AGG | - | chr4.1:16603046-16603065 | None:intergenic | 30.0% | |
| GACCAATTTGGATAACAAAA+AGG | + | chr4.1:16605569-16605588 | MS.gene34937:CDS | 30.0% | |
| GATCTTTACAAGCTTGAATT+TGG | + | chr4.1:16603331-16603350 | MS.gene34937:CDS | 30.0% | |
| GGAATTAAGAAAGTTGAAGA+GGG | + | chr4.1:16602965-16602984 | MS.gene34937:CDS | 30.0% | |
| TCAAAATAGATGTGATAAGG+TGG | + | chr4.1:16603567-16603586 | MS.gene34937:CDS | 30.0% | |
| TGATTCAGGTACAAAAAAAG+TGG | + | chr4.1:16603249-16603268 | MS.gene34937:CDS | 30.0% | |
| TGTAGATGCTGTGTTATATT+TGG | + | chr4.1:16605167-16605186 | MS.gene34937:CDS | 30.0% | |
| ! | AATGGATTTGCAAATGGTAA+TGG | + | chr4.1:16605396-16605415 | MS.gene34937:CDS | 30.0% |
| ! | AGAACCATGATTTTAAATCG+AGG | + | chr4.1:16604234-16604253 | MS.gene34937:intron | 30.0% |
| ! | CATGTAAATGGATTTGCAAA+TGG | + | chr4.1:16605390-16605409 | MS.gene34937:CDS | 30.0% |
| ! | GATATGATTAATAGTGCTGA+TGG | + | chr4.1:16602938-16602957 | MS.gene34937:CDS | 30.0% |
| ! | GGAATCATTGTCAAATTTTG+AGG | + | chr4.1:16605191-16605210 | MS.gene34937:CDS | 30.0% |
| ! | TAAAATCATGGTTCTATGCA+TGG | - | chr4.1:16604229-16604248 | None:intergenic | 30.0% |
| ! | TGGAATTCATATGTTGTTTG+AGG | + | chr4.1:16603219-16603238 | MS.gene34937:CDS | 30.0% |
| ! | TTATGAGAGACTACAAGTTT+TGG | + | chr4.1:16605620-16605639 | MS.gene34937:CDS | 30.0% |
| ! | TTTGAGATTGAATGTTCCAA+AGG | + | chr4.1:16603390-16603409 | MS.gene34937:CDS | 30.0% |
| !! | ATTAATAGTGCTGATGGAAA+GGG | + | chr4.1:16602944-16602963 | MS.gene34937:CDS | 30.0% |
| !! | CCCCAATAAAAATGTTTTAG+AGG | - | chr4.1:16604326-16604345 | None:intergenic | 30.0% |
| !! | CTTGAATTTGGTGTAAAGAA+AGG | + | chr4.1:16603343-16603362 | MS.gene34937:CDS | 30.0% |
| !! | TATGAAGCAGAAGTATCAAT+TGG | + | chr4.1:16604038-16604057 | MS.gene34937:CDS | 30.0% |
| AAAGAAAGGGAATGAAACCT+TGG | + | chr4.1:16603357-16603376 | MS.gene34937:CDS | 35.0% | |
| AAATAGATGTGATAAGGTGG+TGG | + | chr4.1:16603570-16603589 | MS.gene34937:CDS | 35.0% | |
| AAGCAGAACATGATCAAAGA+AGG | + | chr4.1:16603100-16603119 | MS.gene34937:CDS | 35.0% | |
| AATCCGCATTGAAATCTGAA+AGG | + | chr4.1:16604713-16604732 | MS.gene34937:CDS | 35.0% | |
| ACTCAACTCTACATCTTCTT+CGG | - | chr4.1:16605496-16605515 | None:intergenic | 35.0% | |
| AGATGCTGTGTTATATTTGG+AGG | + | chr4.1:16605170-16605189 | MS.gene34937:CDS | 35.0% | |
| ATTGAGAATTGGCACATTTC+TGG | + | chr4.1:16603667-16603686 | MS.gene34937:CDS | 35.0% | |
| CAAATCCATTTACATGACCT+TGG | - | chr4.1:16605386-16605405 | None:intergenic | 35.0% | |
| CAGTTTGATTCCTGTTGAAT+TGG | + | chr4.1:16603516-16603535 | MS.gene34937:CDS | 35.0% | |
| CATTGAGAAAAGGGGATAAA+GGG | + | chr4.1:16605679-16605698 | MS.gene34937:CDS | 35.0% | |
| CCGAACCATTAATTGAGAAT+TGG | + | chr4.1:16603656-16603675 | MS.gene34937:CDS | 35.0% | |
| CTAGGTTCATATGTTTCTCT+AGG | + | chr4.1:16603871-16603890 | MS.gene34937:intron | 35.0% | |
| CTTCCTTTCAGATTTCAATG+CGG | - | chr4.1:16604719-16604738 | None:intergenic | 35.0% | |
| GAACAAATGGATGAGTATCA+AGG | + | chr4.1:16604080-16604099 | MS.gene34937:CDS | 35.0% | |
| GATCAATAACAATGCAAGGA+GGG | - | chr4.1:16603042-16603061 | None:intergenic | 35.0% | |
| GATTTCCAAGGTCATGTAAA+TGG | + | chr4.1:16605378-16605397 | MS.gene34937:CDS | 35.0% | |
| GGGAATTAAGAAAGTTGAAG+AGG | + | chr4.1:16602964-16602983 | MS.gene34937:CDS | 35.0% | |
| GTATCAGCTCATTGAGAAAA+GGG | + | chr4.1:16605670-16605689 | MS.gene34937:CDS | 35.0% | |
| TAACCATATGCCTTCATCTT+TGG | + | chr4.1:16604513-16604532 | MS.gene34937:CDS | 35.0% | |
| TACAACATCTACGTGATTTG+AGG | + | chr4.1:16605724-16605743 | MS.gene34937:CDS | 35.0% | |
| TATCAGCTCATTGAGAAAAG+GGG | + | chr4.1:16605671-16605690 | MS.gene34937:CDS | 35.0% | |
| TCATCAAGAAAGGAAAGTCT+TGG | + | chr4.1:16605425-16605444 | MS.gene34937:CDS | 35.0% | |
| TCATCCATTTGTTCATGATC+AGG | - | chr4.1:16604074-16604093 | None:intergenic | 35.0% | |
| TCATTAAGCTCCAAAGATGA+AGG | - | chr4.1:16604526-16604545 | None:intergenic | 35.0% | |
| TCATTGAGAAAAGGGGATAA+AGG | + | chr4.1:16605678-16605697 | MS.gene34937:CDS | 35.0% | |
| TGAATCAGATGATATGTGTG+AGG | + | chr4.1:16602832-16602851 | MS.gene34937:CDS | 35.0% | |
| TGATCAATAACAATGCAAGG+AGG | - | chr4.1:16603043-16603062 | None:intergenic | 35.0% | |
| TGCTGTTGAGATTTCCAAAT+TGG | + | chr4.1:16602781-16602800 | MS.gene34937:CDS | 35.0% | |
| TGTATCAGCTCATTGAGAAA+AGG | + | chr4.1:16605669-16605688 | MS.gene34937:CDS | 35.0% | |
| TGTTGAAGTTGAGAAAACTG+AGG | + | chr4.1:16603447-16603466 | MS.gene34937:CDS | 35.0% | |
| TTCAGCTGAAAAGACCAATT+TGG | + | chr4.1:16605557-16605576 | MS.gene34937:CDS | 35.0% | |
| TTCAGGTACAAAAAAAGTGG+AGG | + | chr4.1:16603252-16603271 | MS.gene34937:CDS | 35.0% | |
| TTGTATCCGAAAGAATATCC+TGG | - | chr4.1:16604106-16604125 | None:intergenic | 35.0% | |
| TTTAATGCCCAACATGATAG+TGG | + | chr4.1:16604167-16604186 | MS.gene34937:CDS | 35.0% | |
| TTTGCAGTATCAGAGAATGA+TGG | + | chr4.1:16604861-16604880 | MS.gene34937:CDS | 35.0% | |
| ! | ACTAGAACAGCTGAAAGTAT+TGG | + | chr4.1:16605230-16605249 | MS.gene34937:CDS | 35.0% |
| ! | AGATGTGAGGTTTTCTCAAA+TGG | + | chr4.1:16603774-16603793 | MS.gene34937:CDS | 35.0% |
| ! | AGATGTTTTTCCATGGATGA+AGG | + | chr4.1:16602910-16602929 | MS.gene34937:CDS | 35.0% |
| ! | ATGCATGGATTTGAGGTAAA+AGG | - | chr4.1:16604214-16604233 | None:intergenic | 35.0% |
| ! | GCAACCTCGATTTAAAATCA+TGG | - | chr4.1:16604241-16604260 | None:intergenic | 35.0% |
| ! | GGAGAGTGAAGATTTTATTC+TGG | + | chr4.1:16603606-16603625 | MS.gene34937:CDS | 35.0% |
| ! | TCATTGGATGGAAGTGTAAT+AGG | + | chr4.1:16604652-16604671 | MS.gene34937:CDS | 35.0% |
| ! | TTCAGCTAGTTTGTGATGAT+TGG | - | chr4.1:16602816-16602835 | None:intergenic | 35.0% |
| ! | TTTGAGGTTGAACATGATTC+AGG | + | chr4.1:16603235-16603254 | MS.gene34937:CDS | 35.0% |
| !! | ATGGAAAGCATCATCAAGAA+AGG | + | chr4.1:16605415-16605434 | MS.gene34937:CDS | 35.0% |
| !! | CAAAAAGGTTGGTTTAGAAG+AGG | + | chr4.1:16605584-16605603 | MS.gene34937:CDS | 35.0% |
| !! | GATTAATAGTGCTGATGGAA+AGG | + | chr4.1:16602943-16602962 | MS.gene34937:CDS | 35.0% |
| !! | GTACTGATTGCATCAAAAAG+TGG | - | chr4.1:16605474-16605493 | None:intergenic | 35.0% |
| !! | TGTCAAATTTTGAGGAAGAG+AGG | + | chr4.1:16605199-16605218 | MS.gene34937:CDS | 35.0% |
| !!! | AGAAACTACTTTTTCTCGAG+AGG | + | chr4.1:16604608-16604627 | MS.gene34937:CDS | 35.0% |
| !!! | GGATATTTTGATGGAGAACT+AGG | + | chr4.1:16603853-16603872 | MS.gene34937:CDS | 35.0% |
| !!! | TACTTTTTCTCGAGAGGAAA+GGG | + | chr4.1:16604614-16604633 | MS.gene34937:CDS | 35.0% |
| AAATGTGTCCAAGGTCAATG+AGG | + | chr4.1:16603726-16603745 | MS.gene34937:CDS | 40.0% | |
| AACATCTTCGTGAAGAGAAC+GGG | + | chr4.1:16605319-16605338 | MS.gene34937:CDS | 40.0% | |
| AACTGCAAATGTAGTCGCAT+CGG | - | chr4.1:16604297-16604316 | None:intergenic | 40.0% | |
| AGGCTTACCACTATCATGTT+GGG | - | chr4.1:16604177-16604196 | None:intergenic | 40.0% | |
| ATTAAACCTGACTGAGCTAG+TGG | - | chr4.1:16604153-16604172 | None:intergenic | 40.0% | |
| ATTGAATGTTCCAAAGGCTC+AGG | + | chr4.1:16603396-16603415 | MS.gene34937:CDS | 40.0% | |
| CGCATTGAAATCTGAAAGGA+AGG | + | chr4.1:16604717-16604736 | MS.gene34937:CDS | 40.0% | |
| GAACATCTTCGTGAAGAGAA+CGG | + | chr4.1:16605318-16605337 | MS.gene34937:CDS | 40.0% | |
| GAAGAAGATGTAGAGTTGAG+TGG | + | chr4.1:16605495-16605514 | MS.gene34937:CDS | 40.0% | |
| GACGATCATGATGATTTCCA+AGG | + | chr4.1:16605366-16605385 | MS.gene34937:CDS | 40.0% | |
| GATGATGCATCACAAACTCA+AGG | + | chr4.1:16604005-16604024 | MS.gene34937:CDS | 40.0% | |
| GGAACAGAAGATTCATTGGA+TGG | + | chr4.1:16604640-16604659 | MS.gene34937:CDS | 40.0% | |
| GGAGCTTAATGAGAATGAAG+AGG | + | chr4.1:16604534-16604553 | MS.gene34937:CDS | 40.0% | |
| GTAATAGGCGACATAGAATG+TGG | + | chr4.1:16604667-16604686 | MS.gene34937:CDS | 40.0% | |
| GTCAGGAACAGAAGATTCAT+TGG | + | chr4.1:16604636-16604655 | MS.gene34937:CDS | 40.0% | |
| GTCGCAGACCTTTATAATGT+TGG | + | chr4.1:16604262-16604281 | MS.gene34937:intron | 40.0% | |
| GTGGATTCAACCAATTCAAC+AGG | - | chr4.1:16603529-16603548 | None:intergenic | 40.0% | |
| TCAAGGCCAGGATATTCTTT+CGG | + | chr4.1:16604097-16604116 | MS.gene34937:CDS | 40.0% | |
| TCACACACAAGATCTCTACA+AGG | - | chr4.1:16602755-16602774 | None:intergenic | 40.0% | |
| TCTACGTGATTTGAGGAATG+TGG | + | chr4.1:16605731-16605750 | MS.gene34937:CDS | 40.0% | |
| TCTCAAAGTTTCCTCTTCCA+AGG | - | chr4.1:16603377-16603396 | None:intergenic | 40.0% | |
| TCTTGGCTACTAAAGCAAAG+AGG | + | chr4.1:16605442-16605461 | MS.gene34937:CDS | 40.0% | |
| TGATTCAACCTCATTGACCT+TGG | - | chr4.1:16603737-16603756 | None:intergenic | 40.0% | |
| TGTAGCAGCCAATCAAACAA+TGG | + | chr4.1:16604789-16604808 | MS.gene34937:CDS | 40.0% | |
| TGTGCTTGTTCTGTTTGTGA+TGG | + | chr4.1:16603286-16603305 | MS.gene34937:CDS | 40.0% | |
| ! | ATTTCCATTTTCTGTGGCAG+TGG | - | chr4.1:16603548-16603567 | None:intergenic | 40.0% |
| ! | TGATGGTGTCAAGGAAACTA+TGG | + | chr4.1:16603303-16603322 | MS.gene34937:CDS | 40.0% |
| ! | TGGTTCTATGCATGGATTTG+AGG | - | chr4.1:16604221-16604240 | None:intergenic | 40.0% |
| ! | TTCTGTTTGTGATGGTGTCA+AGG | + | chr4.1:16603294-16603313 | MS.gene34937:CDS | 40.0% |
| !! | AAAGGTTGGTTTAGAAGAGG+AGG | + | chr4.1:16605587-16605606 | MS.gene34937:CDS | 40.0% |
| !! | GCACATTTCTGGTGATATTG+TGG | + | chr4.1:16603678-16603697 | MS.gene34937:CDS | 40.0% |
| !! | TGAGAGACTACAAGTTTTGG+AGG | + | chr4.1:16605623-16605642 | MS.gene34937:CDS | 40.0% |
| !! | TGTAGTTGATGAAGACTCTC+CGG | - | chr4.1:16604586-16604605 | None:intergenic | 40.0% |
| !!! | CTACTTTTTCTCGAGAGGAA+AGG | + | chr4.1:16604613-16604632 | MS.gene34937:CDS | 40.0% |
| AATGGATGAGTATCAAGGCC+AGG | + | chr4.1:16604085-16604104 | MS.gene34937:CDS | 45.0% | |
| ACAATCCGAGTACGATCAAG+AGG | + | chr4.1:16604888-16604907 | MS.gene34937:CDS | 45.0% | |
| AGAGAAAGCAGCAATGCAGA+TGG | + | chr4.1:16604834-16604853 | MS.gene34937:CDS | 45.0% | |
| AGGGAATGAAACCTTGGAAG+AGG | + | chr4.1:16603363-16603382 | MS.gene34937:CDS | 45.0% | |
| ATCACAAACTCAAGGTGAGG+AGG | + | chr4.1:16604013-16604032 | MS.gene34937:CDS | 45.0% | |
| ATTCATCCACTAGCTCAGTC+AGG | + | chr4.1:16604144-16604163 | MS.gene34937:CDS | 45.0% | |
| CAGGAACATAGGAGATCTTG+CGG | + | chr4.1:16605764-16605783 | MS.gene34937:CDS | 45.0% | |
| CATAGCCTCTTGATCGTACT+CGG | - | chr4.1:16604896-16604915 | None:intergenic | 45.0% | |
| GAACTCAGAGTCAGGAACAT+AGG | + | chr4.1:16605753-16605772 | MS.gene34937:CDS | 45.0% | |
| GAATCCACTGCCACAGAAAA+TGG | + | chr4.1:16603541-16603560 | MS.gene34937:CDS | 45.0% | |
| GAGGCTTACCACTATCATGT+TGG | - | chr4.1:16604178-16604197 | None:intergenic | 45.0% | |
| TGATCATCATCCTGAGCCTT+TGG | - | chr4.1:16603409-16603428 | None:intergenic | 45.0% | |
| TGCATCACAAACTCAAGGTG+AGG | + | chr4.1:16604010-16604029 | MS.gene34937:CDS | 45.0% | |
| ! | GCTCCAAAGATGAAGGCATA+TGG | - | chr4.1:16604519-16604538 | None:intergenic | 45.0% |
| ! | GGTTTGAGATGTTCTTGCTG+TGG | + | chr4.1:16602986-16603005 | MS.gene34937:CDS | 45.0% |
| ! | TAGATGTGATAAGGTGGTGG+AGG | + | chr4.1:16603573-16603592 | MS.gene34937:CDS | 45.0% |
| !! | GGCATATGGTTACTTGCTGT+TGG | - | chr4.1:16604505-16604524 | None:intergenic | 45.0% |
| !!! | TGCGGATTTTAACTCCTCGA+AGG | - | chr4.1:16604701-16604720 | None:intergenic | 45.0% |
| AGCAACGCTGAGGATAGTGA+TGG | + | chr4.1:16605078-16605097 | MS.gene34937:CDS | 50.0% | |
| CTTCGTGAAGAGAACGGGAA+TGG | + | chr4.1:16605324-16605343 | MS.gene34937:CDS | 50.0% | |
| GCAACGCTGAGGATAGTGAT+GGG | + | chr4.1:16605079-16605098 | MS.gene34937:CDS | 50.0% | |
| GGAATGTGGAACTCAGAGTC+AGG | + | chr4.1:16605745-16605764 | MS.gene34937:CDS | 50.0% | |
| TCCTCAGCGTTGCTACAAGA+AGG | - | chr4.1:16605072-16605091 | None:intergenic | 50.0% | |
| TCCTTCTTGTAGCAACGCTG+AGG | + | chr4.1:16605068-16605087 | MS.gene34937:CDS | 50.0% | |
| TGAAGACTCTCCGGAGAAGT+CGG | - | chr4.1:16604577-16604596 | None:intergenic | 50.0% | |
| TTTCTCGAGAGGAAAGGGTC+AGG | + | chr4.1:16604619-16604638 | MS.gene34937:CDS | 50.0% | |
| !! | CAGCATCTACAGGAGTGTTC+TGG | - | chr4.1:16605158-16605177 | None:intergenic | 50.0% |
| !! | GGTTGGTTTAGAAGAGGAGG+TGG | + | chr4.1:16605590-16605609 | MS.gene34937:CDS | 50.0% |
| !! | GTGATAAGGTGGTGGAGGAA+GGG | + | chr4.1:16603578-16603597 | MS.gene34937:CDS | 50.0% |
| !! | TGTGATAAGGTGGTGGAGGA+AGG | + | chr4.1:16603577-16603596 | MS.gene34937:CDS | 50.0% |
| ! | ATGTGGTGACGTGACCTTCG+AGG | + | chr4.1:16604684-16604703 | MS.gene34937:CDS | 55.0% |
| !! | GGTGGTGGAGGAAGGGTTTA+AGG | + | chr4.1:16603585-16603604 | MS.gene34937:CDS | 55.0% |
| CTCCGGAGAAGTCGGTGTGT+CGG | - | chr4.1:16604569-16604588 | None:intergenic | 60.0% | |
| TCCGGAGAAGTCGGTGTGTC+GGG | - | chr4.1:16604568-16604587 | None:intergenic | 60.0% | |
| !! | TCCCGACACACCGACTTCTC+CGG | + | chr4.1:16604564-16604583 | MS.gene34937:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16602746 | 16605791 | 16602746 | ID=MS.gene34937 |
| chr4.1 | mRNA | 16602746 | 16605791 | 16602746 | ID=MS.gene34937.t1;Parent=MS.gene34937 |
| chr4.1 | exon | 16602746 | 16603874 | 16602746 | ID=MS.gene34937.t1.exon1;Parent=MS.gene34937.t1 |
| chr4.1 | CDS | 16602746 | 16603874 | 16602746 | ID=cds.MS.gene34937.t1;Parent=MS.gene34937.t1 |
| chr4.1 | exon | 16604000 | 16604188 | 16604000 | ID=MS.gene34937.t1.exon2;Parent=MS.gene34937.t1 |
| chr4.1 | CDS | 16604000 | 16604188 | 16604000 | ID=cds.MS.gene34937.t1;Parent=MS.gene34937.t1 |
| chr4.1 | exon | 16604440 | 16605791 | 16604440 | ID=MS.gene34937.t1.exon3;Parent=MS.gene34937.t1 |
| chr4.1 | CDS | 16604440 | 16605791 | 16604440 | ID=cds.MS.gene34937.t1;Parent=MS.gene34937.t1 |
| Gene Sequence |
| Protein sequence |
