AlfalfaGEDB | MS.gene08336

M. sativa cultivar XinJiangDaYe / MS.gene08336

KEGG: -
GO: -
PFAM: PF07227.14 PF16312.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08336.t1	RHN42357.1	94.5	801	38	2	1	795	1	801	0.00E+00	1453

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08336.t1	Q94B71	47.5	813	329	21	1	795	1	733	3.7e-167	590.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08336.t1	A0A396GUR3	94.5	801	38	2	1	795	1	801	0.0e+00	1453.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene08336	0.847166	1.37E-59	-1.69E-46
MS.gene04918	MS.gene08336	0.84261	2.33E-58	-1.69E-46
MS.gene04919	MS.gene08336	0.800845	1.19E-48	-1.69E-46
MS.gene04920	MS.gene08336	0.814783	1.29E-51	-1.69E-46
MS.gene049283	MS.gene08336	0.831721	1.42E-55	-1.69E-46
MS.gene049350	MS.gene08336	0.822736	2.02E-53	-1.69E-46
MS.gene049368	MS.gene08336	0.859032	5.48E-63	-1.69E-46
MS.gene049499	MS.gene08336	0.822847	1.90E-53	-1.69E-46
MS.gene049711	MS.gene08336	0.820662	6.09E-53	-1.69E-46
MS.gene049807	MS.gene08336	0.83404	3.77E-56	-1.69E-46

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08336.t1	MTR_4g039650	36.506	704	364	16	143	791	556	1231	1.56e-120	392
MS.gene08336.t1	MTR_5g097360	37.639	449	264	7	328	765	79	522	5.84e-91	297
MS.gene08336.t1	MTR_3g045740	70.000	80	24	0	347	426	58	137	8.29e-28	110

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08336.t1	AT1G14740	51.644	821	283	27	1	795	1	733	0.0	700
MS.gene08336.t1	AT3G63500	35.982	667	352	19	171	792	247	883	1.75e-110	358
MS.gene08336.t1	AT3G63500	35.982	667	352	19	171	792	522	1158	2.28e-108	358
MS.gene08336.t1	AT3G63500	35.982	667	352	19	171	792	522	1158	2.28e-108	358
MS.gene08336.t1	AT5G48160	39.101	445	247	8	337	767	93	527	1.83e-89	293
MS.gene08336.t1	AT5G48160	39.101	445	247	8	337	767	93	527	1.83e-89	293
MS.gene08336.t1	AT3G07780	38.034	468	261	10	310	760	63	518	3.64e-86	284
MS.gene08336.t1	AT3G07780	38.034	468	261	10	310	760	63	518	3.64e-86	284
MS.gene08336.t1	AT3G07780	38.034	468	261	10	310	760	74	529	8.37e-86	284

Showing 1 to 9 of 9 entries

Previous1Next

Find 189 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGAGAGGATTGTTA+GGG	0.469024	4.1:+16871650	MS.gene08336:CDS
AAAATGCAAGATGAAATTGA+TGG	0.424314	4.1:+16874193	MS.gene08336:CDS
AAACCAAGGCAGATGAAGCA+AGG	0.604039	4.1:+16873993	MS.gene08336:CDS
AAACCGGGACCGAGCTTGAA+AGG	0.493130	4.1:+16872167	MS.gene08336:CDS
AAAGCCATTTGAAAATGAAA+AGG	0.513640	4.1:-16871259	None:intergenic
AAAGGGTACTAAAGTTCAAT+TGG	0.350020	4.1:+16871848	MS.gene08336:CDS
AAAGTTTGGAGAGCATTGTT+CGG	0.498175	4.1:+16873942	MS.gene08336:CDS
AAATCAAGATGGAGGAAAAT+GGG	0.449888	4.1:+16870957	MS.gene08336:CDS
AAATTGCATGATCTGATTGC+AGG	0.425913	4.1:-16872438	None:intergenic
AACAGGAAGCAAACTCTTGC+AGG	0.328838	4.1:-16871976	None:intergenic

Showing 1 to 10 of 189 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTGCTGGAAAACTT+TGG	-	chr4.1:16872810-16872829	None:intergenic	30.0%
AAATCAAACAATGATGAGGA+TGG	+	chr4.1:16872776-16872795	MS.gene08336:intron	30.0%
AAATCAAGATGGAGGAAAAT+GGG	+	chr4.1:16870957-16870976	MS.gene08336:CDS	30.0%
AAATGCAAAATACCATTGCT+AGG	-	chr4.1:16873334-16873353	None:intergenic	30.0%
ACGTTTGTTTGGATCAAAAT+TGG	-	chr4.1:16870737-16870756	None:intergenic	30.0%
AGTAATACTTGTAGTTGGAT+TGG	+	chr4.1:16872086-16872105	MS.gene08336:CDS	30.0%
AGTGGGATTATAAGCATATT+TGG	+	chr4.1:16872886-16872905	MS.gene08336:intron	30.0%
AGTTACATCAACACATTCAA+CGG	-	chr4.1:16873472-16873491	None:intergenic	30.0%
AGTTAGTAGGATTGTGAATA+GGG	+	chr4.1:16872549-16872568	MS.gene08336:intron	30.0%
ATATTGAAGCTGAATACTGT+AGG	-	chr4.1:16873095-16873114	None:intergenic	30.0%

Showing 1 to 10 of 263 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	16870658	16874258	16870658	ID=MS.gene08336
chr4.1	mRNA	16870658	16874258	16870658	ID=MS.gene08336.t1;Parent=MS.gene08336
chr4.1	exon	16870658	16872467	16870658	ID=MS.gene08336.t1.exon1;Parent=MS.gene08336.t1
chr4.1	CDS	16870658	16872467	16870658	ID=cds.MS.gene08336.t1;Parent=MS.gene08336.t1
chr4.1	exon	16873681	16874258	16873681	ID=MS.gene08336.t1.exon2;Parent=MS.gene08336.t1
chr4.1	CDS	16873681	16874258	16873681	ID=cds.MS.gene08336.t1;Parent=MS.gene08336.t1

Gene Sequence

>MS.gene08336

ATGATTGCTGGTAAAGATCTTCGTAATGGTGTTGCTGATTCTGATGGTGAAAACTCCAGAAGTAAGTTATCAAGACCCAATTTTGATCCAAACAAACGTTACCCAGATGAAAAAGATGCTGTTTTTCTGAGAGATTCCGACATGGGTGGTATTGGTGGGTCCAACCAGGTTTCTGGTGGTAACTCAGGTTTTCAAGAATTGACCCTGAGTTATCTATGTGGAAACCCAAGATTGAAAGAGATTCAAGGTGAAAGCTTTCTGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGATTCTTCAAAGAGATCTATTGAAGAAGATGCTGAAAGAGAGAGTAATATTAGGGATAAGAGACCAAAGGTTCAGACACTGGATCTTTCTCTTGGTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAATGCTTTTCACAACAATGGTGATCATCAACAACCTGTTAGAGTAAAACCTAGCAGGCCTTCAACTACTCATACTTCATATTCAAATGATTATACAGCTCCTTTGTCTCATTCTTATTCTAACGCCTTTTCATTTTCAAATGGCTTTTCACATAATCCAAGTTGTTCTTTAACTCGTAATTCAACGGATAATTTTGATTATTCCGCGAGTAAAGACGATCAAATTTGGAACTGTGGTGAAGGTACTAATGGCTCTGTGCATAGCAGGTTTAAGCCAATTGGTGATGGTATTGTTGCTTTGGCAAATCCTGGAAATGGAACTGGTGTTAGTTCATTTATGCAACCAGGTAATAGTAGTCATTATAAAACGACTAGTTCTGAAAACCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACATAGGTTTGAGACTCATTCAGGGGATTCAAGGGGAAGAAATTCTGAGAGTTTGAGGGGTTTTGAAGGTTTAGATGGTGGTGGAAATAGGAATCTTTCAAAACCAGAGAGGATTGTTAGGGAAATTATTTGGGAGTCTGTTCCTATTTTTTCATTGACAATTCAGGAGCTTGCCGAGGAAGTTGTGACATCAACGAAGGAGTACTTGAAGAATCTTATTGAGACCAAGAAAGACGAATTAGTCAACCTTCAAAGCAGGCTTGAGAGAAGGTCTGATCTTTCCAAGGAGACACTTTCAAAGGGTACTAAAGTTCAATTGGAGATTTTAGTCGCGGTAAAGATGGGACTGTCCAGCTTCTTGTACGGTAATCTTCAGTTATCTGAGTTGGTAGAGGTTTTCTTGTATAGGAGGTGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGTAATACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAACCGGGACCGAGCTTGAAAGGACCTTCTGGTACCACGGAAATACAGTTTCATTGTATTGGATGTGAACATGCATCGGAAATGTTTGGATTTGTTAAAGATGTGTTCATGTCTTGTGCAAAGGATTGGGGGATTGAAACCTTGTTGAAAGAGCTTGATTGTGTGAGGAGGATTTTCATGGGAAGTGAGGATCGCAAAGGGAAGGAGCTGCATTTGAAAACTGATGGCTTGCTATTAAAGCTTCAAGCTAAAATAGTATCTCCTTCAGAAGCCTGCAATCAGATCATGCAATTTTTCAACTGTAAGTGTCTCGACTATGGTATTTGTTTTTCACAATTAAATTTATGCTTTTATTTAAATAAACAATTGCCTGCAGCATTTGAGTTAGTAGGATTGTGAATAGGGAAGGACACAAATTTTGATATGAAGGTGGAAAAACATAACTTTTGATAAATATTAAATATATGCTCTTGTTAAATTGTCTGATTCATCATGCTCTTTAAACATTTCCAGTCATTGCTGAAATAAAAATTAAACAAATAACAGACAATTCAGAAGGAGACTAGATAAAATGTTAATTGAATTTAGTGTTTGGTTGTTCAAAGGAAAAAATCAAACAATGATGAGGATGGATGGACATCCAAAGTTTTCCAGCAATGTTTTTTTAAGACAAGAAATTCAGGGCAAGTTGAATTCGAGTTTGTTGATATTGCTTTTGAAGTGGGATTATAAGCATATTTGGTTTTAATTATTTTAGTAAAAGAAACAGCCAAAATCTCTCGTGAACATTTTGATCATAAACTTTTCATTAACAAAAGCAAATCTATTTGAATGGTATGTATGAAGTGATTTGAGACTCTGCAAGATGTTTTATTAACCTCAATTTGTTTGATTGACAATTGAACTTTTTCTTTCTTTAGATTCACCTACAGTATTCAGCTTCAATATTAAATTTGTTGGAATTTAATAAGTTATTATCATAGATTATATTAAATTTGTTAGAATTTAATAAGTTATTATCATAGATTAGTAAAATGAATTTAAAGTAATTGTTTTTGGTCTTTTGATGCTTGATTAGAATGAACAATGAATTCTGTGTTACATTGAATATTTATGCCTAATATGGTATGGGTGTTATGTTACAAAGTTGGTATGACACTGTGTCCTAGCAATGGTATTTTGCATTTGAGGTAGGAAGCGTTGGAATGTTTGTTGAACTGCAGCCCTATGAAACACGGGCACCAGACACTCACATGCAAACACTGATAATAAAGTGATTGAAATGTGCTTTTCTCTTTGGTACCGTTGAATGTGTTGATGTAACTATTCAAACTACATGTGAATTGTGACCCTGTGATTTGTTGTGTCATCTTGGGTAGAAGGCCTTTTCCTGCTTTAGCTTTAACTATTGATTATTGATAAGATTTTTGTGATGAAGCTAGTTTGATGTAGTTGAATAACCTATAATCATATCTGATATCTAACTTTTGAGAGATAATTTTTCTGATGAATAGATGCGGAAAACATGGCAAACTTTCCGGCTTCTGTTTTCTCTTCAAAGGAATTGATAGCCTCTCAAGCCAGCCTTCCAAAGGACACGCTGTCTCTTCCAAAATCTAGTTCTTCAATACAGAAATACGCTTATGAGTCGAGCTATTCTACTAGGCCACATTCCGGTGCCCCATCCAAAGAAGACATCAAGGCTACCATCTTTAGCGAACTAAAAAATGATGACGATCTTCAATTAGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCGAAAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGGGCGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGATGAAGAGTATGCGACAAAGCTTTCAAAACTCTGTCTGAATGATACCGAGGAAACGCAGAGGAGGAAATTGGATGAAATGAAAGTGGTGGAAAATTCTTGTGTTGATTACTATAAAATGAAAAAGAAAATGCAAGATGAAATTGATGGTTTGTTGGCGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA

Protein sequence

>MS.gene08336.t1

MIAGKDLRNGVADSDGENSRSKLSRPNFDPNKRYPDEKDAVFLRDSDMGGIGGSNQVSGGNSGFQELTLSYLCGNPRLKEIQGESFLSQKGKEVMVSENSNQDGGKWVERDFLSLSDSSKRSIEEDAERESNIRDKRPKVQTLDLSLGLPDVSLSLTASNAFHNNGDHQQPVRVKPSRPSTTHTSYSNDYTAPLSHSYSNAFSFSNGFSHNPSCSLTRNSTDNFDYSASKDDQIWNCGEGTNGSVHSRFKPIGDGIVALANPGNGTGVSSFMQPGNSSHYKTTSSENHSFFPSELPARHRFETHSGDSRGRNSESLRGFEGLDGGGNRNLSKPERIVREIIWESVPIFSLTIQELAEEVVTSTKEYLKNLIETKKDELVNLQSRLERRSDLSKETLSKGTKVQLEILVAVKMGLSSFLYGNLQLSELVEVFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTTEIQFHCIGCEHASEMFGFVKDVFMSCAKDWGIETLLKELDCVRRIFMGSEDRKGKELHLKTDGLLLKLQAKIVSPSEACNQIMQFFNYAENMANFPASVFSSKELIASQASLPKDTLSLPKSSSSIQKYAYESSYSTRPHSGAPSKEDIKATIFSELKNDDDLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARRAAEGFQKMIRTKTAQMDEEYATKLSKLCLNDTEETQRRKLDEMKVVENSCVDYYKMKKKMQDEIDGLLARMEATKQHWV