Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071444.t1 | RHN79104.1 | 99.6 | 233 | 1 | 0 | 1 | 233 | 636 | 868 | 6.30E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071444.t1 | O81644 | 74.7 | 221 | 51 | 4 | 1 | 220 | 635 | 851 | 3.9e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071444.t1 | A0A396JPH0 | 99.6 | 233 | 1 | 0 | 1 | 233 | 636 | 868 | 4.6e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene071444 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene071444 | 0.847274 | 1.28E-59 | -1.69E-46 |
| MS.gene049272 | MS.gene071444 | 0.800844 | 1.19E-48 | -1.69E-46 |
| MS.gene049404 | MS.gene071444 | 0.839892 | 1.21E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene071444 | 0.812658 | 3.80E-51 | -1.69E-46 |
| MS.gene049666 | MS.gene071444 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene071444 | 0.815659 | 8.26E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene071444 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene071444 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene071444 | 0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene071444 | 0.831169 | 1.94E-55 | -1.69E-46 |
| MS.gene050156 | MS.gene071444 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene050201 | MS.gene071444 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene071444 | 0.812028 | 5.21E-51 | -1.69E-46 |
| MS.gene050430 | MS.gene071444 | 0.807471 | 4.97E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene071444 | 0.829677 | 4.50E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene071444 | 0.802912 | 4.48E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene071444 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene071444 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene071444 | 0.80532 | 1.41E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene071444 | 0.806327 | 8.68E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene071444 | 0.80369 | 3.09E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene071444 | 0.825269 | 5.14E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene071444 | 0.812679 | 3.75E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene071444 | 0.848856 | 4.69E-60 | -1.69E-46 |
| MS.gene05125 | MS.gene071444 | 0.801114 | 1.05E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene071444 | 0.852974 | 3.25E-61 | -1.69E-46 |
| MS.gene051279 | MS.gene071444 | 0.824611 | 7.35E-54 | -1.69E-46 |
| MS.gene051594 | MS.gene071444 | 0.847058 | 1.47E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene071444 | 0.821935 | 3.10E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene071444 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene071444 | 0.846435 | 2.18E-59 | -1.69E-46 |
| MS.gene051957 | MS.gene071444 | 0.840317 | 9.35E-58 | -1.69E-46 |
| MS.gene052190 | MS.gene071444 | 0.835473 | 1.64E-56 | -1.69E-46 |
| MS.gene052208 | MS.gene071444 | 0.850002 | 2.25E-60 | -1.69E-46 |
| MS.gene052447 | MS.gene071444 | 0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene052488 | MS.gene071444 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene071444 | 0.842135 | 3.11E-58 | -1.69E-46 |
| MS.gene052561 | MS.gene071444 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene071444 | 0.840166 | 1.02E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene071444 | 0.849611 | 2.89E-60 | -1.69E-46 |
| MS.gene052773 | MS.gene071444 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene052843 | MS.gene071444 | 0.807856 | 4.12E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene071444 | 0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene071444 | 0.83963 | 1.41E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene071444 | 0.815082 | 1.11E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene071444 | -0.848692 | 5.21E-60 | -1.69E-46 |
| MS.gene053145 | MS.gene071444 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene053221 | MS.gene071444 | 0.815301 | 9.91E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene071444 | 0.858501 | 7.89E-63 | -1.69E-46 |
| MS.gene053599 | MS.gene071444 | 0.820376 | 7.09E-53 | -1.69E-46 |
| MS.gene05365 | MS.gene071444 | 0.809244 | 2.08E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene071444 | 0.841646 | 4.19E-58 | -1.69E-46 |
| MS.gene053966 | MS.gene071444 | 0.806123 | 9.59E-50 | -1.69E-46 |
| MS.gene053974 | MS.gene071444 | 0.805062 | 1.60E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene071444 | 0.825841 | 3.76E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene071444 | 0.821233 | 4.50E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene071444 | 0.83247 | 9.28E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene071444 | 0.821776 | 3.37E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene071444 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene071444 | -0.848378 | 6.37E-60 | -1.69E-46 |
| MS.gene054405 | MS.gene071444 | 0.80067 | 1.29E-48 | -1.69E-46 |
| MS.gene054467 | MS.gene071444 | 0.803166 | 3.97E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene071444 | 0.810628 | 1.05E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene071444 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene071444 | 0.808397 | 3.16E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene071444 | 0.828394 | 9.21E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene071444 | 0.830951 | 2.20E-55 | -1.69E-46 |
| MS.gene054801 | MS.gene071444 | 0.805304 | 1.42E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene071444 | 0.827586 | 1.44E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene071444 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene05531 | MS.gene071444 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene071444 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene071444 | 0.820817 | 5.61E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene071444 | 0.805457 | 1.32E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene071444 | 0.819465 | 1.15E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene071444 | 0.822491 | 2.30E-53 | -1.69E-46 |
| MS.gene055694 | MS.gene071444 | 0.808241 | 3.41E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene071444 | 0.85605 | 4.18E-62 | -1.69E-46 |
| MS.gene055818 | MS.gene071444 | 0.865466 | 5.79E-65 | -1.69E-46 |
| MS.gene05604 | MS.gene071444 | 0.819286 | 1.26E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene071444 | 0.842751 | 2.14E-58 | -1.69E-46 |
| MS.gene056162 | MS.gene071444 | 0.810708 | 1.01E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene071444 | 0.828402 | 9.17E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene071444 | 0.837972 | 3.79E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene071444 | 0.848417 | 6.21E-60 | -1.69E-46 |
| MS.gene056373 | MS.gene071444 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene056498 | MS.gene071444 | 0.831012 | 2.12E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene071444 | 0.817404 | 3.36E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene071444 | 0.809819 | 1.57E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene071444 | 0.819906 | 9.08E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene071444 | 0.839746 | 1.32E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene071444 | 0.827613 | 1.42E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene071444 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene071444 | 0.81071 | 1.01E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene071444 | 0.840154 | 1.03E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene071444 | 0.834781 | 2.46E-56 | -1.69E-46 |
| MS.gene057598 | MS.gene071444 | 0.830761 | 2.45E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene071444 | 0.805676 | 1.19E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene071444 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene071444 | 0.852586 | 4.19E-61 | -1.69E-46 |
| MS.gene058294 | MS.gene071444 | 0.807231 | 5.59E-50 | -1.69E-46 |
| MS.gene058502 | MS.gene071444 | 0.803017 | 4.26E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene071444 | 0.837163 | 6.11E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene071444 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene071444 | 0.828577 | 8.32E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene071444 | 0.843743 | 1.16E-58 | -1.69E-46 |
| MS.gene059272 | MS.gene071444 | 0.819812 | 9.54E-53 | -1.69E-46 |
| MS.gene059382 | MS.gene071444 | 0.81861 | 1.79E-52 | -1.69E-46 |
| MS.gene059458 | MS.gene071444 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene059459 | MS.gene071444 | 0.817725 | 2.84E-52 | -1.69E-46 |
| MS.gene059460 | MS.gene071444 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene071444 | 0.833797 | 4.34E-56 | -1.69E-46 |
| MS.gene059584 | MS.gene071444 | 0.840369 | 9.07E-58 | -1.69E-46 |
| MS.gene059625 | MS.gene071444 | 0.833679 | 4.64E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene071444 | -0.82262 | 2.15E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene071444 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene071444 | 0.819969 | 8.79E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene071444 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene071444 | 0.808072 | 3.71E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene071444 | 0.860305 | 2.27E-63 | -1.69E-46 |
| MS.gene060553 | MS.gene071444 | 0.802381 | 5.76E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene071444 | 0.805075 | 1.59E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene071444 | 0.804614 | 1.99E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene071444 | -0.819999 | 8.65E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene071444 | 0.812026 | 5.21E-51 | -1.69E-46 |
| MS.gene060918 | MS.gene071444 | 0.820531 | 6.53E-53 | -1.69E-46 |
| MS.gene060919 | MS.gene071444 | 0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene071444 | -0.813159 | 2.95E-51 | -1.69E-46 |
| MS.gene061266 | MS.gene071444 | 0.815698 | 8.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071444.t1 | MTR_7g091460 | 79.439 | 214 | 39 | 3 | 1 | 213 | 639 | 848 | 1.51e-102 | 318 |
| MS.gene071444.t1 | MTR_4g127660 | 36.364 | 198 | 97 | 5 | 1 | 190 | 638 | 814 | 3.43e-32 | 124 |
| MS.gene071444.t1 | MTR_3g463530 | 42.975 | 121 | 65 | 2 | 1 | 121 | 631 | 747 | 5.46e-29 | 114 |
| MS.gene071444.t1 | MTR_3g463530 | 42.975 | 121 | 65 | 2 | 1 | 121 | 631 | 747 | 7.68e-29 | 114 |
| MS.gene071444.t1 | MTR_2g036860 | 34.536 | 194 | 107 | 4 | 1 | 190 | 636 | 813 | 4.37e-28 | 112 |
| MS.gene071444.t1 | MTR_3g463530 | 47.826 | 92 | 46 | 1 | 1 | 92 | 631 | 720 | 5.68e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT3G57410 | 68.919 | 222 | 64 | 4 | 1 | 222 | 637 | 853 | 6.37e-80 | 258 |
| MS.gene071444.t1 | AT2G41740 | 67.083 | 240 | 64 | 6 | 1 | 230 | 635 | 869 | 2.02e-78 | 254 |
| MS.gene071444.t1 | AT2G41740 | 67.083 | 240 | 64 | 6 | 1 | 230 | 635 | 869 | 2.02e-78 | 254 |
| MS.gene071444.t1 | AT3G57410 | 69.079 | 152 | 44 | 2 | 1 | 152 | 637 | 785 | 5.11e-62 | 207 |
| MS.gene071444.t1 | AT3G57410 | 80.952 | 84 | 16 | 0 | 1 | 84 | 637 | 720 | 1.83e-45 | 161 |
| MS.gene071444.t1 | AT5G57320 | 37.968 | 187 | 102 | 3 | 3 | 189 | 640 | 812 | 1.17e-36 | 137 |
| MS.gene071444.t1 | AT5G57320 | 37.968 | 187 | 102 | 3 | 3 | 189 | 640 | 812 | 1.17e-36 | 137 |
| MS.gene071444.t1 | AT4G30160 | 35.294 | 255 | 123 | 8 | 1 | 231 | 645 | 881 | 2.66e-36 | 135 |
| MS.gene071444.t1 | AT4G30160 | 38.974 | 195 | 97 | 5 | 1 | 190 | 636 | 813 | 2.74e-36 | 135 |
| MS.gene071444.t1 | AT4G30160 | 38.974 | 195 | 97 | 5 | 1 | 190 | 636 | 813 | 2.74e-36 | 135 |
| MS.gene071444.t1 | AT4G30160 | 38.974 | 195 | 97 | 5 | 1 | 190 | 636 | 813 | 2.74e-36 | 135 |
| MS.gene071444.t1 | AT2G29890 | 48.113 | 106 | 53 | 1 | 1 | 106 | 616 | 719 | 8.55e-28 | 111 |
| MS.gene071444.t1 | AT2G29890 | 48.113 | 106 | 53 | 1 | 1 | 106 | 635 | 738 | 9.55e-28 | 111 |
| MS.gene071444.t1 | AT2G29890 | 48.113 | 106 | 53 | 1 | 1 | 106 | 633 | 736 | 9.92e-28 | 111 |
| MS.gene071444.t1 | AT2G29890 | 48.113 | 106 | 53 | 1 | 1 | 106 | 633 | 736 | 9.92e-28 | 111 |
| MS.gene071444.t1 | AT2G29890 | 48.113 | 106 | 53 | 1 | 1 | 106 | 635 | 738 | 1.05e-27 | 111 |
Find 0 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTTTAGAATATTATAA+AGG | + | 9448:8037-8056 | MS.gene071444:intergenic | 10.0% |
| !!! | TTTTTTTCATTTTGTTTTTT+TGG | - | 9448:8675-8694 | MS.gene071444:CDS | 10.0% |
| !! | AATTCTAACAAAAAAATGAA+TGG | + | 9448:6977-6996 | MS.gene071444:intergenic | 15.0% |
| !!! | AAATAAAGGTGTTATATTAA+AGG | + | 9448:7678-7697 | MS.gene071444:intergenic | 15.0% |
| !!! | ATTCTAAATGTTTTAAATGT+TGG | - | 9448:6584-6603 | MS.gene071444:intron | 15.0% |
| !!! | CATTTTTGTATATATTTGAA+GGG | + | 9448:7980-7999 | MS.gene071444:intergenic | 15.0% |
| !!! | TTTATTTAGCTTTGAATTTT+AGG | - | 9448:7852-7871 | MS.gene071444:intron | 15.0% |
| !!! | TTTATTTTTCTTATTACTTC+AGG | - | 9448:6693-6712 | MS.gene071444:CDS | 15.0% |
| !! | AAAGCTAAATAAACAGAAAA+AGG | + | 9448:7845-7864 | MS.gene071444:intergenic | 20.0% |
| !! | AGAAAATAAATATTGGAAGA+TGG | + | 9448:8111-8130 | MS.gene071444:intergenic | 20.0% |
| !! | ATCTGAAAACATCAAAATTA+GGG | - | 9448:7315-7334 | MS.gene071444:intron | 20.0% |
| !! | TCGAGAAAGAAAATAAATAT+TGG | + | 9448:8118-8137 | MS.gene071444:intergenic | 20.0% |
| !! | TTTAAGAATATTATTGTTGC+TGG | - | 9448:8480-8499 | MS.gene071444:intron | 20.0% |
| !!! | AGATCTCAAAATATAAGTTT+TGG | + | 9448:7071-7090 | MS.gene071444:intergenic | 20.0% |
| !!! | GCATTTTTGTATATATTTGA+AGG | + | 9448:7981-8000 | MS.gene071444:intergenic | 20.0% |
| !!! | TTTAATTTGTTGACTTTACA+TGG | - | 9448:6670-6689 | MS.gene071444:CDS | 20.0% |
| !!! | TTTCATTTTGTTTTTTTGGT+AGG | - | 9448:8679-8698 | MS.gene071444:CDS | 20.0% |
| ! | AACTGAAATTCAGTTAGTTA+CGG | + | 9448:7124-7143 | MS.gene071444:intergenic | 25.0% |
| ! | AAGTATGTAGTGAAAAAGAA+AGG | + | 9448:6326-6345 | MS.gene071444:intergenic | 25.0% |
| ! | AATTCTCTCATGCAATAAAA+TGG | - | 9448:7522-7541 | MS.gene071444:intron | 25.0% |
| ! | ACTTCAGAAATACATAGATA+TGG | - | 9448:6238-6257 | MS.gene071444:CDS | 25.0% |
| ! | ATTCTCTCATGCAATAAAAT+GGG | - | 9448:7523-7542 | MS.gene071444:intron | 25.0% |
| ! | CCTTATATAAAGTAACAGAA+GGG | - | 9448:6294-6313 | MS.gene071444:intron | 25.0% |
| ! | CTAAATAAACAGAAAAAGGA+AGG | + | 9448:7841-7860 | MS.gene071444:intergenic | 25.0% |
| ! | GATCTGAAAACATCAAAATT+AGG | - | 9448:7314-7333 | MS.gene071444:intron | 25.0% |
| ! | TATGTCCAAAGGAATTAAAA+TGG | - | 9448:6378-6397 | MS.gene071444:intron | 25.0% |
| ! | TTAAGAATACAGCACATAAT+AGG | + | 9448:8637-8656 | MS.gene071444:intergenic | 25.0% |
| !! | AGAATTGAATTTTACTTACC+TGG | + | 9448:6163-6182 | MS.gene071444:intergenic | 25.0% |
| !! | AGAATTTTGTCATCACATAT+AGG | - | 9448:6548-6567 | MS.gene071444:intron | 25.0% |
| !! | GATCATGTTTACTTCATTTT+TGG | + | 9448:7719-7738 | MS.gene071444:intergenic | 25.0% |
| !! | GTTTTCCCAAAATAAAAAAC+AGG | + | 9448:6788-6807 | MS.gene071444:intergenic | 25.0% |
| !! | TTTCACTACATACTTTTCAT+GGG | - | 9448:6331-6350 | MS.gene071444:intron | 25.0% |
| !! | TTTGAAACAAAAGTTTGTGT+TGG | + | 9448:7649-7668 | MS.gene071444:intergenic | 25.0% |
| !! | TTTTCACTACATACTTTTCA+TGG | - | 9448:6330-6349 | MS.gene071444:intron | 25.0% |
| !!! | AAAGCATTTTGCTTTTCTTT+AGG | + | 9448:6131-6150 | MS.gene071444:intergenic | 25.0% |
| !!! | AAGCAAAATGCTTTTGAAAT+TGG | - | 9448:6137-6156 | MS.gene071444:CDS | 25.0% |
| !!! | AAGCATTTTGCTTTTCTTTA+GGG | + | 9448:6130-6149 | MS.gene071444:intergenic | 25.0% |
| !!! | ACAGTCCTGTTTTTTATTTT+GGG | - | 9448:6780-6799 | MS.gene071444:intron | 25.0% |
| !!! | ATTTCTGAAGTAAAGTTTCA+AGG | + | 9448:6229-6248 | MS.gene071444:intergenic | 25.0% |
| !!! | CCTTCTGTTACTTTATATAA+GGG | + | 9448:6296-6315 | MS.gene071444:intergenic | 25.0% |
| !!! | TACAGTCCTGTTTTTTATTT+TGG | - | 9448:6779-6798 | MS.gene071444:intron | 25.0% |
| AAACAACGAACAAACCAAAA+GGG | + | 9448:6404-6423 | None:intergenic | 30.0% | |
| AGAAATGGTTGAATGAAAAG+AGG | - | 9448:8603-8622 | MS.gene071444:intron | 30.0% | |
| ATACAGCACATAATAGGATT+TGG | + | 9448:8631-8650 | MS.gene071444:intergenic | 30.0% | |
| ATATATTTGAAGGGCTATGA+AGG | + | 9448:7971-7990 | MS.gene071444:intergenic | 30.0% | |
| ATGTGATGACAAAATTCTAG+TGG | + | 9448:6546-6565 | MS.gene071444:intergenic | 30.0% | |
| CCCTTATATAAAGTAACAGA+AGG | - | 9448:6293-6312 | MS.gene071444:intron | 30.0% | |
| CTCTGTTAACAAATCATCTT+GGG | + | 9448:6048-6067 | MS.gene071444:intergenic | 30.0% | |
| GATCAATCAATTGTTGGATT+CGG | - | 9448:8575-8594 | MS.gene071444:intron | 30.0% | |
| GGTTATTTAGTAACATTAGC+TGG | + | 9448:7103-7122 | MS.gene071444:intergenic | 30.0% | |
| TAAACAACGAACAAACCAAA+AGG | + | 9448:6405-6424 | MS.gene071444:intergenic | 30.0% | |
| TGAATTACTTAGCATGTTTC+AGG | + | 9448:6827-6846 | MS.gene071444:intergenic | 30.0% | |
| TGATCCATTCACATACAAAA+AGG | + | 9448:8424-8443 | MS.gene071444:intergenic | 30.0% | |
| TGGACATTTAGAAATACTGT+TGG | + | 9448:8091-8110 | MS.gene071444:intergenic | 30.0% | |
| TGTGATGACAAAATTCTAGT+GGG | + | 9448:6545-6564 | MS.gene071444:intergenic | 30.0% | |
| TTCTCTCATGCAATAAAATG+GGG | - | 9448:7524-7543 | MS.gene071444:intron | 30.0% | |
| TTTGTGGATCAATCAATTGT+TGG | - | 9448:8569-8588 | MS.gene071444:intron | 30.0% | |
| ! | AAATAAGGCTCAATTGATTC+TGG | - | 9448:8248-8267 | MS.gene071444:intron | 30.0% |
| ! | AATATTTTGCATTTCTGTGC+TGG | - | 9448:6478-6497 | MS.gene071444:intron | 30.0% |
| ! | CATTCCTTTTTGTATGTGAA+TGG | - | 9448:8417-8436 | MS.gene071444:intron | 30.0% |
| ! | TACATACTTTTCATGGGATT+GGG | - | 9448:6337-6356 | MS.gene071444:intron | 30.0% |
| ! | TATAACACCTTTATTTCGTC+AGG | - | 9448:7682-7701 | MS.gene071444:intron | 30.0% |
| ! | TGTTGATGAAGAACTAAATG+CGG | + | 9448:8831-8850 | MS.gene071444:intergenic | 30.0% |
| ! | TTCTTATTACTTCAGGTTCA+CGG | - | 9448:6700-6719 | MS.gene071444:CDS | 30.0% |
| ! | TTTAAGCACTGCAATTGATA+TGG | - | 9448:7766-7785 | MS.gene071444:intron | 30.0% |
| !! | CCCTTCTGTTACTTTATATA+AGG | + | 9448:6297-6316 | MS.gene071444:intergenic | 30.0% |
| !!! | ATTTCAACTGCTGATTTTGT+TGG | + | 9448:6877-6896 | MS.gene071444:intergenic | 30.0% |
| !!! | TTTTGTTTTTTTGGTAGGAC+TGG | - | 9448:8684-8703 | MS.gene071444:CDS | 30.0% |
| AACGAGACAGAAATTTACAC+TGG | + | 9448:7748-7767 | MS.gene071444:intergenic | 35.0% | |
| AAGTTTGTGTTGGACTATCT+CGG | + | 9448:7639-7658 | MS.gene071444:intergenic | 35.0% | |
| ACCATAACCTGACGAAATAA+AGG | + | 9448:7692-7711 | MS.gene071444:intergenic | 35.0% | |
| AGAAAACAACGAGTATGGTA+TGG | - | 9448:8365-8384 | MS.gene071444:intron | 35.0% | |
| AGAACTAAATGCGGAGTTTA+AGG | + | 9448:8822-8841 | MS.gene071444:intergenic | 35.0% | |
| AGATTGAATGGCTTAAACCA+TGG | - | 9448:8764-8783 | MS.gene071444:CDS | 35.0% | |
| ATAAATCAAGTACCCCAAGT+AGG | + | 9448:6206-6225 | MS.gene071444:intergenic | 35.0% | |
| CAACAAAGAAAGTTACTCCT+AGG | - | 9448:8849-8868 | MS.gene071444:intron | 35.0% | |
| CAATTGATTGATCCACAAAG+AGG | + | 9448:8568-8587 | MS.gene071444:intergenic | 35.0% | |
| CATGAAGTAGAAACAGTTGT+TGG | + | 9448:6938-6957 | MS.gene071444:intergenic | 35.0% | |
| CCTCTGTTAACAAATCATCT+TGG | + | 9448:6049-6068 | MS.gene071444:intergenic | 35.0% | |
| GGTAAAATGATGTGATTGTG+AGG | - | 9448:6625-6644 | MS.gene071444:intron | 35.0% | |
| TCAATAGTGAGAAATTGTGG+CGG | + | 9448:7446-7465 | MS.gene071444:intergenic | 35.0% | |
| TCCTCAATAGTGAGAAATTG+TGG | + | 9448:7449-7468 | MS.gene071444:intergenic | 35.0% | |
| TGAGCAGAACATAATTACCA+TGG | - | 9448:6508-6527 | MS.gene071444:intron | 35.0% | |
| TGGTCTAAAAAGATTGCTAG+TGG | - | 9448:6604-6623 | MS.gene071444:intron | 35.0% | |
| TGGTGACAGGAAAAATCAAA+CGG | - | 9448:8268-8287 | MS.gene071444:CDS | 35.0% | |
| TTGGATTCGGAAAAGAGAAA+TGG | - | 9448:8588-8607 | MS.gene071444:intron | 35.0% | |
| TTGGGATTATACAAGAGCTA+AGG | - | 9448:6355-6374 | MS.gene071444:intron | 35.0% | |
| ! | ACCTTTATTTCGTCAGGTTA+TGG | - | 9448:7688-7707 | MS.gene071444:intron | 35.0% |
| ! | ACTTTATATAAGGGTACACG+TGG | + | 9448:6287-6306 | MS.gene071444:intergenic | 35.0% |
| ! | AGGAATTAAAATGGCCCTTT+TGG | - | 9448:6387-6406 | MS.gene071444:intron | 35.0% |
| ! | ATAAGCTTTTTAACCTCGAG+AGG | - | 9448:7203-7222 | MS.gene071444:intron | 35.0% |
| ! | CTACATACTTTTCATGGGAT+TGG | - | 9448:6336-6355 | MS.gene071444:intron | 35.0% |
| ! | GCAAAATAAGCTCTTTTGTG+AGG | - | 9448:7337-7356 | MS.gene071444:intron | 35.0% |
| ! | TAAGCTTTTTAACCTCGAGA+GGG | - | 9448:7204-7223 | MS.gene071444:intron | 35.0% |
| ! | TCTTATTACTTCAGGTTCAC+GGG | - | 9448:6701-6720 | MS.gene071444:CDS | 35.0% |
| ! | TGAATGGATCTAAAGCAACT+TGG | + | 9448:6961-6980 | MS.gene071444:intergenic | 35.0% |
| !! | CCAAGATGATTTGTTAACAG+AGG | - | 9448:6046-6065 | MS.gene071444:CDS | 35.0% |
| !! | TCAATTGAGCCTTATTTAGC+AGG | + | 9448:8245-8264 | MS.gene071444:intergenic | 35.0% |
| !!! | AAATGCTTTTGAAATTGGCC+AGG | - | 9448:6142-6161 | MS.gene071444:CDS | 35.0% |
| !!! | AAGGGCCATTTTAATTCCTT+TGG | + | 9448:6386-6405 | MS.gene071444:intergenic | 35.0% |
| AAACAGGTGTCTCTACTCTT+TGG | - | 9448:6736-6755 | MS.gene071444:CDS | 40.0% | |
| AACAGGTGTCTCTACTCTTT+GGG | - | 9448:6737-6756 | MS.gene071444:CDS | 40.0% | |
| AAGAGCTAAGGTATGTCCAA+AGG | - | 9448:6367-6386 | MS.gene071444:intron | 40.0% | |
| AATGGCTTAGAAGGCAGAAT+GGG | + | 9448:8535-8554 | MS.gene071444:intergenic | 40.0% | |
| AGTTTGTGTTGGACTATCTC+GGG | + | 9448:7638-7657 | MS.gene071444:intergenic | 40.0% | |
| ATGTCTCGACCTGCTAAATA+AGG | - | 9448:8233-8252 | MS.gene071444:intron | 40.0% | |
| CAATAGTGAGAAATTGTGGC+GGG | + | 9448:7445-7464 | MS.gene071444:intergenic | 40.0% | |
| CACGTAACATACACAACTAC+TGG | + | 9448:7896-7915 | MS.gene071444:intergenic | 40.0% | |
| CAGTCACAAGAGAGATTGAA+TGG | - | 9448:8752-8771 | MS.gene071444:CDS | 40.0% | |
| CATAGATATGGCTGCATCTT+TGG | - | 9448:6250-6269 | MS.gene071444:CDS | 40.0% | |
| CTCATATTCCTCTCCTACTT+GGG | - | 9448:6190-6209 | MS.gene071444:CDS | 40.0% | |
| GAAAAATCAAACGGGTCAAG+TGG | - | 9448:8277-8296 | MS.gene071444:CDS | 40.0% | |
| GCCACAATTTCTCACTATTG+AGG | - | 9448:7445-7464 | MS.gene071444:intron | 40.0% | |
| GCTTGAGAAAACAACGAGTA+TGG | - | 9448:8360-8379 | MS.gene071444:intron | 40.0% | |
| GGTGACAGGAAAAATCAAAC+GGG | - | 9448:8269-8288 | MS.gene071444:CDS | 40.0% | |
| GTGACATACAGTTGAAGACA+AGG | + | 9448:6458-6477 | MS.gene071444:intergenic | 40.0% | |
| GTGTGAACCACAGAAGTAAT+GGG | - | 9448:7273-7292 | MS.gene071444:intron | 40.0% | |
| TATGTGACCCATTACTTCTG+TGG | + | 9448:7283-7302 | MS.gene071444:intergenic | 40.0% | |
| TCATATTCCTCTCCTACTTG+GGG | - | 9448:6191-6210 | MS.gene071444:CDS | 40.0% | |
| TCTCATATTCCTCTCCTACT+TGG | - | 9448:6189-6208 | MS.gene071444:CDS | 40.0% | |
| TGTGTGAACCACAGAAGTAA+TGG | - | 9448:7272-7291 | MS.gene071444:intron | 40.0% | |
| TTGAATGGCTTAAACCATGG+AGG | - | 9448:8767-8786 | MS.gene071444:CDS | 40.0% | |
| TTTCTCACTATTGAGGATCG+TGG | - | 9448:7452-7471 | MS.gene071444:intron | 40.0% | |
| ! | AAGCTTTTTAACCTCGAGAG+GGG | - | 9448:7205-7224 | MS.gene071444:intron | 40.0% |
| ! | GATCCTTGACCTTTTACAGA+TGG | + | 9448:8875-8894 | MS.gene071444:intergenic | 40.0% |
| ! | GATTGTGAGGTTCATGCTTT+TGG | - | 9448:6638-6657 | MS.gene071444:intron | 40.0% |
| ! | TGTCACTTCACATTCAATCG+CGG | - | 9448:7378-7397 | MS.gene071444:intron | 40.0% |
| !! | ATTGTTGCTGGTTCTATCTG+TGG | - | 9448:8492-8511 | MS.gene071444:intron | 40.0% |
| !! | GCAGAAGTGTTTGTTTGGAT+TGG | - | 9448:6092-6111 | MS.gene071444:CDS | 40.0% |
| !! | TTTTGCATTTCTGTGCTGGT+TGG | - | 9448:6482-6501 | MS.gene071444:intron | 40.0% |
| !!! | GTTTTGGCTTTCAGTTGTTG+TGG | + | 9448:7055-7074 | MS.gene071444:intergenic | 40.0% |
| AAAGCTTCCGCTCTTTGTCT+TGG | + | 9448:8794-8813 | MS.gene071444:intergenic | 45.0% | |
| AAAGCTTCTGCCCTTTGTCT+TGG | + | 9448:8310-8329 | MS.gene071444:intergenic | 45.0% | |
| AAATCAAACGGGTCAAGTGG+AGG | - | 9448:8280-8299 | MS.gene071444:CDS | 45.0% | |
| AAGACAAAGGGCAGAAGCTT+TGG | - | 9448:8309-8328 | MS.gene071444:intron | 45.0% | |
| AATCAAACGGGTCAAGTGGA+GGG | - | 9448:8281-8300 | MS.gene071444:CDS | 45.0% | |
| ACTATTGAGGATCGTGGTGA+TGG | - | 9448:7458-7477 | MS.gene071444:intron | 45.0% | |
| ACTCCTAGGCCATCTGTAAA+AGG | - | 9448:8863-8882 | MS.gene071444:intron | 45.0% | |
| AGAGTAGAGACACCTGTTTC+TGG | + | 9448:6735-6754 | MS.gene071444:intergenic | 45.0% | |
| AGCTAGATAAGAGCCTGCTA+CGG | - | 9448:7404-7423 | MS.gene071444:intron | 45.0% | |
| AGGCCATCTGTAAAAGGTCA+AGG | - | 9448:8869-8888 | MS.gene071444:intron | 45.0% | |
| CAAAGAGGAGAGGTTGTGAA+TGG | + | 9448:8553-8572 | MS.gene071444:intergenic | 45.0% | |
| GAATGGCTTAGAAGGCAGAA+TGG | + | 9448:8536-8555 | MS.gene071444:intergenic | 45.0% | |
| GAGGTTGTGAATGGCTTAGA+AGG | + | 9448:8544-8563 | MS.gene071444:intergenic | 45.0% | |
| GATATGGCTGCATCTTTGGA+AGG | - | 9448:6254-6273 | MS.gene071444:CDS | 45.0% | |
| GATTGATCCACAAAGAGGAG+AGG | + | 9448:8563-8582 | MS.gene071444:intergenic | 45.0% | |
| GCGATTGAATGTGAAGTGAC+AGG | + | 9448:7379-7398 | MS.gene071444:intergenic | 45.0% | |
| GTTCCAGAGAGTAGCATTTC+AGG | - | 9448:8992-9011 | MS.gene071444:CDS | 45.0% | |
| GTTTGTGTTGGACTATCTCG+GGG | + | 9448:7637-7656 | MS.gene071444:intergenic | 45.0% | |
| TATCTGATACTTGCAGTGCC+TGG | - | 9448:7486-7505 | MS.gene071444:intron | 45.0% | |
| TGGACTATCTCGGGGTAATT+TGG | + | 9448:7629-7648 | MS.gene071444:intergenic | 45.0% | |
| TTCACAACCTCTCCTCTTTG+TGG | - | 9448:8553-8572 | MS.gene071444:intron | 45.0% | |
| ! | AGTGGGATTTTGAACAGCCA+TGG | + | 9448:6528-6547 | MS.gene071444:intergenic | 45.0% |
| ! | CAGTTGTTGTGGCTTGTAAC+AGG | + | 9448:7044-7063 | MS.gene071444:intergenic | 45.0% |
| ! | GCTCAATTGATTCTGGTGAC+AGG | - | 9448:8255-8274 | MS.gene071444:intron | 45.0% |
| ! | TGACCTTTTACAGATGGCCT+AGG | + | 9448:8869-8888 | MS.gene071444:intergenic | 45.0% |
| !! | CACACGCAGAAGTGTTTGTT+TGG | - | 9448:6087-6106 | MS.gene071444:CDS | 45.0% |
| !! | GAAATGCTACTCTCTGGAAC+AGG | + | 9448:8992-9011 | MS.gene071444:intergenic | 45.0% |
| !! | GAATTGCTCTTGCTGTTTCC+AGG | + | 9448:7507-7526 | MS.gene071444:intergenic | 45.0% |
| !! | GCTGGTTCTATCTGTGGATT+TGG | - | 9448:8498-8517 | MS.gene071444:intron | 45.0% |
| !! | GTGTCTCTACTCTTTGGGAT+TGG | - | 9448:6742-6761 | MS.gene071444:intron | 45.0% |
| !!! | GAGGTTCATGCTTTTGGAAC+AGG | - | 9448:6644-6663 | MS.gene071444:intron | 45.0% |
| ATCAAACGGGTCAAGTGGAG+GGG | - | 9448:8282-8301 | MS.gene071444:CDS | 50.0% | |
| ATCACCTGATACCTCTCCTG+TGG | - | 9448:8955-8974 | MS.gene071444:CDS | 50.0% | |
| CGGGAACTCATTCCAGAAAC+AGG | - | 9448:6720-6739 | MS.gene071444:CDS | 50.0% | |
| CGTCAGTTCTTACTGCTGAG+AGG | - | 9448:8924-8943 | MS.gene071444:CDS | 50.0% | |
| CTACTTGTCTCTACCGTAGC+AGG | + | 9448:7420-7439 | MS.gene071444:intergenic | 50.0% | |
| CTCTCTTGTGACTGCAAGAG+TGG | + | 9448:8746-8765 | MS.gene071444:intergenic | 50.0% | |
| CTCTTTGTCTTGGTCCTCCA+TGG | + | 9448:8784-8803 | MS.gene071444:intergenic | 50.0% | |
| TCAAGTACCCCAAGTAGGAG+AGG | + | 9448:6201-6220 | MS.gene071444:intergenic | 50.0% | |
| TGGAGGACCAAGACAAAGAG+CGG | - | 9448:8784-8803 | MS.gene071444:intron | 50.0% | |
| AGGACTGTACCTCCACAGCA+TGG | + | 9448:6768-6787 | MS.gene071444:intergenic | 55.0% | |
| CTGCGTGTGTATCGAGTACG+AGG | + | 9448:6076-6095 | MS.gene071444:intergenic | 55.0% | |
| GAAGGCAGAATGGGCATGAG+AGG | + | 9448:8526-8545 | MS.gene071444:intergenic | 55.0% | |
| TCAAACGGGTCAAGTGGAGG+GGG | - | 9448:8283-8302 | MS.gene071444:CDS | 55.0% | |
| !! | CTCTGGAACAGGACTGTCAC+TGG | + | 9448:8981-9000 | MS.gene071444:intergenic | 55.0% |
| !! | CTTTGGGATTGGCCATGCTG+TGG | - | 9448:6753-6772 | MS.gene071444:intron | 55.0% |
| ACACACACACACCCCTCTCG+AGG | + | 9448:7219-7238 | MS.gene071444:intergenic | 60.0% | |
| ACAGGACTGTCACTGGCCAC+AGG | + | 9448:8974-8993 | MS.gene071444:intergenic | 60.0% | |
| ACTGTCACTGGCCACAGGAG+AGG | + | 9448:8969-8988 | MS.gene071444:intergenic | 60.0% | |
| CAAACGGGTCAAGTGGAGGG+GGG | - | 9448:8284-8303 | MS.gene071444:CDS | 60.0% | |
| TGGAGGGGGGCCAAGACAAA+GGG | - | 9448:8297-8316 | MS.gene071444:CDS | 60.0% | |
| !! | CTGGCCACAGGAGAGGTATC+AGG | + | 9448:8962-8981 | MS.gene071444:intergenic | 60.0% |
| !! | TGGGATTGGCCATGCTGTGG+AGG | - | 9448:6756-6775 | MS.gene071444:intron | 60.0% |
| GTGGAGGGGGGCCAAGACAA+AGG | - | 9448:8296-8315 | MS.gene071444:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 9448 | gene | 6023 | 9013 | 6023 | ID=MS.gene071444 |
| 9448 | mRNA | 6023 | 9013 | 6023 | ID=MS.gene071444.t1;Parent=MS.gene071444 |
| 9448 | exon | 8873 | 9013 | 8873 | ID=MS.gene071444.t1.exon1;Parent=MS.gene071444.t1 |
| 9448 | CDS | 8873 | 9013 | 8873 | ID=cds.MS.gene071444.t1;Parent=MS.gene071444.t1 |
| 9448 | exon | 8660 | 8791 | 8660 | ID=MS.gene071444.t1.exon2;Parent=MS.gene071444.t1 |
| 9448 | CDS | 8660 | 8791 | 8660 | ID=cds.MS.gene071444.t1;Parent=MS.gene071444.t1 |
| 9448 | exon | 8259 | 8321 | 8259 | ID=MS.gene071444.t1.exon3;Parent=MS.gene071444.t1 |
| 9448 | CDS | 8259 | 8321 | 8259 | ID=cds.MS.gene071444.t1;Parent=MS.gene071444.t1 |
| 9448 | exon | 6655 | 6759 | 6655 | ID=MS.gene071444.t1.exon4;Parent=MS.gene071444.t1 |
| 9448 | CDS | 6655 | 6759 | 6655 | ID=cds.MS.gene071444.t1;Parent=MS.gene071444.t1 |
| 9448 | exon | 6023 | 6281 | 6023 | ID=MS.gene071444.t1.exon5;Parent=MS.gene071444.t1 |
| 9448 | CDS | 6023 | 6281 | 6023 | ID=cds.MS.gene071444.t1;Parent=MS.gene071444.t1 |
| Gene Sequence |
| Protein sequence |
