AlfalfaGEDB | MS.gene073016

M. sativa cultivar XinJiangDaYe / MS.gene073016

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101
PFAM: PF01981.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073016.t1	XP_003603541.2	91.8	184	15	0	1	184	1	184	5.40E-89	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073016.t1	Q3SZ85	44.6	139	69	3	49	184	7	140	1.8e-24	114.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073016.t1	G7JCD9	91.8	184	15	0	1	184	23	206	3.9e-89	337.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene073016	-0.820011	8.59E-53	-1.69E-46
MS.gene049159	MS.gene073016	-0.839197	1.83E-57	-1.69E-46
MS.gene049254	MS.gene073016	-0.853343	2.55E-61	-1.69E-46
MS.gene049283	MS.gene073016	-0.817191	3.75E-52	-1.69E-46
MS.gene049343	MS.gene073016	-0.824841	6.49E-54	-1.69E-46
MS.gene049404	MS.gene073016	-0.801678	8.04E-49	-1.69E-46
MS.gene049419	MS.gene073016	0.850214	1.96E-60	-1.69E-46
MS.gene049435	MS.gene073016	-0.841343	5.03E-58	-1.69E-46
MS.gene049452	MS.gene073016	-0.819461	1.15E-52	-1.69E-46
MS.gene049499	MS.gene073016	-0.808431	3.11E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073016.t1	MTR_3g108900	91.848	184	15	0	1	184	23	206	9.30e-117	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073016.t1	AT5G10700	60.335	179	54	3	6	184	24	185	1.28e-72	217
MS.gene073016.t1	AT5G10700	60.335	179	54	3	6	184	24	185	1.33e-72	218

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Find 48 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCGAGGTACGAACGGGA+GGG	0.566860	3.3:+89035562	None:intergenic
AAGTATCGATCAGATCACGC+CGG	0.740521	3.3:+89035371	None:intergenic
ACGAAGATACAATTGACTTA+GGG	0.534074	3.3:+89032260	None:intergenic
ACGCTTCTGTTTCCGCGGTT+TGG	0.395935	3.3:-89035315	MS.gene073016:CDS
ACTAAACTTCGTTCTTGAGA+AGG	0.577942	3.3:+89035543	None:intergenic
ACTTCGTTCTTGAGAAGGCG+AGG	0.622634	3.3:+89035548	None:intergenic
AGGCGAGGTACGAACGGGAG+GGG	0.553596	3.3:+89035563	None:intergenic
AGTGGTGGAATCGGTGGAGG+CGG	0.421097	3.3:+89035453	None:intergenic
AGTTGATGTGGAGAGAGTGG+TGG	0.659985	3.3:+89035438	None:intergenic
ATCAGTTGATGTGGAGAGAG+TGG	0.646257	3.3:+89035435	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGAAGCAAAAAAAGCA+GGG	+	chr3.3:89033675-89033694	None:intergenic	30.0%
AATTTGGTCTACGAATTAAC+TGG	-	chr3.3:89035395-89035414	MS.gene073016:CDS	30.0%
ACCAAAACTCTCTTAAGTTT+AGG	-	chr3.3:89034385-89034404	MS.gene073016:intron	30.0%
AGAAAACATGAAATCCTAGA+AGG	+	chr3.3:89035122-89035141	None:intergenic	30.0%
ATCTAAATTCTCGAAACTGA+AGG	+	chr3.3:89035007-89035026	None:intergenic	30.0%
CATAAGAAAAGCAAACTCAA+AGG	+	chr3.3:89034960-89034979	None:intergenic	30.0%
CCAAAACTCTCTTAAGTTTA+GGG	-	chr3.3:89034386-89034405	MS.gene073016:intron	30.0%
CTAAATTCTAATTGACAGAG+GGG	+	chr3.3:89033601-89033620	None:intergenic	30.0%
GGGTTGTTCTGATAAATATA+GGG	+	chr3.3:89033548-89033567	None:intergenic	30.0%
GTCTATCAGTTAGTTAACAA+GGG	-	chr3.3:89034521-89034540	MS.gene073016:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	89032231	89035620	89032231	ID=MS.gene073016
chr3.3	mRNA	89032231	89035620	89032231	ID=MS.gene073016.t1;Parent=MS.gene073016
chr3.3	exon	89035249	89035620	89035249	ID=MS.gene073016.t1.exon1;Parent=MS.gene073016.t1
chr3.3	CDS	89035249	89035620	89035249	ID=cds.MS.gene073016.t1;Parent=MS.gene073016.t1
chr3.3	exon	89032231	89032413	89032231	ID=MS.gene073016.t1.exon2;Parent=MS.gene073016.t1
chr3.3	CDS	89032231	89032413	89032231	ID=cds.MS.gene073016.t1;Parent=MS.gene073016.t1

Gene Sequence

>MS.gene073016

ATGGCTTACACCCTTCCTACGCTTCGTCTCTTCAACCCCTCCCGTTCGTACCTCGCCTTCTCAAGAACGAAGTTTAGTGTCACTTTACACGCGGCCTCTTTTTCAAACCGGACGAGTCAGCTCACCTTTAACTCAATGAGTCAACCCGCCTCCACCGATTCCACCACTCTCTCCACATCAACTGATTCGCCGGAAAACGTCGATGTTGTGGTCCAATACGTGGTGCTCCGGCGTGATCTGATCGATACTTGGCCATTAGGCAGTGTGGTTACTCAAGGTTGTCACGCTTCTGTTTCCGCGGTTTGGTCCAACAAAGACGATCCTGTCACCGTTGATTATTGTAGCCCCGACAAAATTGATTCTATGCACAAAGTAAGGTTTTTCGTTTTCCTCTCTTCTTTATTTTTTATTTTTTCTTTCTTATTTTCTGTTCAATGTAGGCTTTCTAGGTTATGCAATCTGTTTAATTTTAGGGTTTTCTAGCTCAATTTCGATAGTGAACCAGTGCATAGACATGATCGATTTGTTATCTAGTGTTGTGGATGATTGCTTGTAAGCAGTGAAGTAAAAACTTGGAACATTGAATTTTATAATACTTTACATAAACCACACGGTAGTAAATGTCTCCAGTTTAATTCTAGCACTTTTCTGTTTTATATTTTTTATGCACAGTTTTTGCCAATGCAAAATAAAATGGATTCAAACATGTGATTTTTAGTCGGGTTTGCGTTGGGATTGCTATTAGTTTACTGAGTGTTTAATTGGTCCGGGATGTTGGGCAATAAGGCAAGCCTCACTAGGTTCGATCATCACATTGAGTAAGAACAACCACACAAGTCGGTTGGACACCACGTCTTCACCCAAACCTTAAGACATTGGGTTTATGGGTCCGACTCACTTGTGTGGTTGCTCTTGGTCCAATGCCTAGACTCCCCTCATGACCCAACAATGGTATTAGAGCCCGATTAGACTTGGTGGGGGATTAGGAGAGATACCTTGTTTGCTCACAGATGCGGAGAGCCTCAAGGGAGAGATGTTTTGATATGTCGAATGACAGTTTAAAGTTCCACATTGGATGGAAGGTTGAGGTTGAGCTACATATTAGAGAGAGGATCCATAAATCCAATGCCTTAAGGTTTTGGGTTAAGATGTGGTGTCCAACTCACTTGTTTGGTTGCTCTTAGACCAATGTGACGATCCAATCCAGTTAGGCTCCCAATCACGGCCAACACATGACTCTAGGTGCTTTCCATGTATATGATAAATGAATGTTTGTTCATTTTTGTACATGCGGCAATATAGAAGTGCTTGTTGCCCTATATTTATCAGAACAACCCCCACTCTCTCCCTTAGTCCCTCCTCCCTCCCCCCTCTGTCAATTAGAATTTAGAAGGGGTGCATTTCAAGGTTACGAATATGTGAGTTCAAGCTATTTATCATTCCCTGCTTTTTTTGCTTCTGTTTGGGAGAAACAAAACATTTGGCTTTTTAATATTGTCTTTCTTATCTTCTTCAAAAAAAAAAATATTGTCTTTCTTATTGGAGATTATTCAGCTTTGATATCACTTGAGAACAATATTTTAGTGCTGAAAAGCTTCCAACTAGGTCTTTTGTACTTTCTTGGGTATGGAAAGGACTCCCTGATTAGGTACTAGTTTGACATTTGGAATCATAGAAGTATCAATCGGCTCGCAATCAAGCATACCAGTTTCCCCTAAGACATCCATAGCATACTCTATGCGGAAAATAATGATTCATGTCCTTGATTGAGCTATCTCAATACCAAGCAAATAACATAGTCAACCTAGATCTTTAACCTGAAAGTTTTGGATCAGATGTTGTTTAAGTTCCAGTATCCCATCATATTCATCACCTGTAACTATATTCATAAACATAGGCCTCATGTCATACTGTTGAACAATACTTCTAAATCTCCCAAACCATGCTCGAGGGGTAGTTTGACCGTACAGGGCAGGGCCTCGAGAGACATACCCACAACCACAATGATATCCTCATTTTTTTTTTTTGTCTTATTTGTCATTGTTAGTTTGATAGCATTAGAAGGAACCTAAATGAGCTAACTACAAATTGTGTGTGTCTATGTTTATTATATATACTGTTGGTTAAAAAACTGCACCGTACTAGTTGTTTGTCACCAAAACTCTCTTAAGTTTAGGGTTTATTCAACCTGAAAACCAGCTAATGTGTACATCAGTGCTGGAGAACCAAGTGTTTACACACACACACACACACACACACTTAATTCAATAATTTGTCCAGATAAACTAAGGTCTATCAGTTAGTTAACAAGGGTCGTGCGTTGTTTTTTATTATTGATTTTTTTCTTCATGATAAATATGCTAATTGTATGTTAATTAAAATTTATTTAATTGCCTTGTGATTTTTTATTTAAACTTCATTTGTTCAACTATGGCTCAATCGTAGTTGGACTAGTGAATTGCAAACTGGCACCTTCACCAAGTCAATGACCAGTTTGATTTTTAGAACATTGATGTAAGTATGTAGCTTCTCATTTTCTTCTTCTTCATGCTAAATGGAAATATGCTCACATCATGGTTAACTTCAGTAGTCTGTACTTCGCCAAATAGTTGCTCTTGAGACTTTTAATTCAGCATCTGCATTGAAATTATATGTGATACGCTCATAACCATCAACACGTCACACACTTTTTGGAACTTACTTTGGGGCTCTGCCTAAAACATCAACCTTTGAGTTTGCTTTTCTTATGTTGGATAGTGCAATATCCTTTTTGCCTTCAGTTTCGAGAATTTAGATATTTTGAACATGACATGCACAAATAGATGTGATGGTATATTAAAGTTGAAGGTGCAAATTATAATGAAGTTAATATTGCGGCACTTGGTAAACCTTCTAGGATTTCATGTTTTCTGCTTCAATATTTGTGACTTATCTGCTATTGTTATGGATTGTGCCATTTGACATCAGGGTTGTTGTTTAAATTTATTCAGTTATCCATAAGTTTATTCGGTAGTGTCTGTGCACAGTTGCATATGCAGTTTCAATTCAAGGTGCCAGTTTGCAATTCACTAGTCCAACTACGATTGAGCCATAGTTGAACAAATGAAGTTTAAATAAAAAATCATAAGGCAATTAAATAAATTTTCAATTAACATACAATTAGCAATTTGGTCTACGAATTAACTGGTTGCTGAACTTAAACTTTAGGTCACACTTGAAGTGAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTGACATCTGGTGGGATCATTCATAAAGTGTGGGTTGAGCAACCTGAAAACATACCTACTTGCCTTGCTACAAAACCTTACCCTAAGTCAATTGTATCTTCGTATTTTAAGAAGTTGAAACTCTGCAAGTGA

Protein sequence

>MS.gene073016.t1

MAYTLPTLRLFNPSRSYLAFSRTKFSVTLHAASFSNRTSQLTFNSMSQPASTDSTTLSTSTDSPENVDVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKDDPVTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTSGGIIHKVWVEQPENIPTCLATKPYPKSIVSSYFKKLKLCK