AlfalfaGEDB | MS.gene36229

M. sativa cultivar XinJiangDaYe / MS.gene36229

KEGG: -
GO: -
PFAM: PF15697.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36229.t1	XP_003597862.2	99.2	118	1	0	1	118	1	118	5.70E-52	213.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36229.t1	Q9SSC1	46.4	138	54	6	1	118	1	138	7.7e-21	101.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36229.t1	Q2HVW4	99.2	118	1	0	1	118	1	118	4.1e-52	213.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049230	MS.gene36229	0.824814	6.58E-54	-1.69E-46
MS.gene049254	MS.gene36229	0.809161	2.17E-50	-1.69E-46
MS.gene049293	MS.gene36229	-0.805887	1.07E-49	-1.69E-46
MS.gene049378	MS.gene36229	0.853438	2.39E-61	-1.69E-46
MS.gene049419	MS.gene36229	-0.802926	4.45E-49	-1.69E-46
MS.gene049669	MS.gene36229	0.854791	9.73E-62	-1.69E-46
MS.gene050026	MS.gene36229	0.802597	5.20E-49	-1.69E-46
MS.gene050105	MS.gene36229	0.815738	7.93E-52	-1.69E-46
MS.gene050227	MS.gene36229	0.814626	1.40E-51	-1.69E-46
MS.gene050228	MS.gene36229	0.813659	2.29E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene36229	MS.gene36231	PPI
MS.gene36229	MS.gene026783	PPI
MS.gene36229	MS.gene60230	PPI
MS.gene36229	MS.gene034054	PPI
MS.gene36229	MS.gene060879	PPI
MS.gene36229	MS.gene86369	PPI
MS.gene36229	MS.gene75382	PPI
MS.gene36229	MS.gene89049	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36229.t1	MTR_2g103380	99.153	118	1	0	1	118	1	118	3.74e-84	241
MS.gene36229.t1	MTR_4g011060	60.684	117	34	2	1	117	1	105	6.50e-41	132
MS.gene36229.t1	MTR_4g114050	43.548	124	41	5	1	118	1	101	3.25e-23	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36229.t1	AT1G80180	48.551	138	51	6	1	118	1	138	1.34e-30	106
MS.gene36229.t1	AT1G15400	49.180	122	44	5	1	105	1	121	9.27e-29	102
MS.gene36229.t1	AT1G15400	49.180	122	44	5	1	105	1	121	1.10e-28	101
MS.gene36229.t1	AT1G15400	49.180	122	44	5	1	105	1	121	1.54e-28	101
MS.gene36229.t1	AT5G20100	47.273	110	42	5	3	108	2	99	1.27e-18	75.5

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Find 0 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAGTATCATTCAGAAGACA+AGG	-	15689:19805-19824	MS.gene36229:CDS	40.0%
GTTCAGAGAAGTCGTTCTAA+CGG	-	15689:19979-19998	MS.gene36229:CDS	40.0%
TCAGAAGACAAGGTTCATCA+GGG	-	15689:19815-19834	MS.gene36229:CDS	40.0%
TTCAGAAGACAAGGTTCATC+AGG	-	15689:19814-19833	MS.gene36229:CDS	40.0%
TACCTTGATCGATGCTTAGG+TGG	+	15689:20120-20139	None:intergenic	45.0%
AACCCACAGGCAGAAATCCT+AGG	+	15689:20060-20079	None:intergenic	50.0%
AGAAGTCGTTCTAACGGTGG+AGG	-	15689:19985-20004	MS.gene36229:CDS	50.0%
CAGAGAAGTCGTTCTAACGG+TGG	-	15689:19982-20001	MS.gene36229:CDS	50.0%
CAGGCAGAAATCCTAGGAGA+CGG	+	15689:20054-20073	None:intergenic	50.0%
CCGTACCGGAAAAGTTTCTC+CGG	-	15689:20017-20036	MS.gene36229:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
15689	gene	19784	20140	19784	ID=MS.gene36229
15689	mRNA	19784	20140	19784	ID=MS.gene36229.t1;Parent=MS.gene36229
15689	exon	19784	20140	19784	ID=MS.gene36229.t1.exon1;Parent=MS.gene36229.t1
15689	CDS	19784	20140	19784	ID=cds.MS.gene36229.t1;Parent=MS.gene36229.t1

Gene Sequence	>MS.gene36229 ATGGAAGGTTTACAAAGATCTGCAGTATCATTCAGAAGACAAGGTTCATCAGGGTTTGTTTGGGATGATAGATTTCTACAAGAAGAAATAAACAAGATGAACCAGAGTCAGAATCAACAAGAACAAGAAGACAAAGATGAAATCAAAGAGATGAACCGTGATGCAACATCACCACAGCTTGGACCAATCAATACTGTTCAGAGAAGTCGTTCTAACGGTGGAGGACGTGGTTACCGTACCGGAAAAGTTTCTCCGGCGATTGAGCCACCGTCTCCTAGGATTTCTGCCTGTGGGTTTTGTGGTGCTTTTGGGAAAGTAGGGGAGAAGAGGAAACCACCTAAGCATCGATCAAGGTAG
Protein sequence	>MS.gene36229.t1 MEGLQRSAVSFRRQGSSGFVWDDRFLQEEINKMNQSQNQQEQEDKDEIKEMNRDATSPQLGPINTVQRSRSNGGGRGYRTGKVSPAIEPPSPRISACGFCGAFGKVGEKRKPPKHRSR