Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88081.t1 | XP_013447916.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 2.00E-137 | 498.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88081.t1 | P35685 | 88.5 | 260 | 28 | 1 | 1 | 260 | 1 | 258 | 1.6e-124 | 446.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88081.t1 | A0A072TYM4 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 1.4e-137 | 498.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene88081 | 0.840594 | 7.91E-58 | -1.69E-46 |
| MS.gene050791 | MS.gene88081 | 0.825526 | 4.47E-54 | -1.69E-46 |
| MS.gene057272 | MS.gene88081 | 0.846131 | 2.63E-59 | -1.69E-46 |
| MS.gene058994 | MS.gene88081 | 0.814008 | 1.92E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88081.t1 | MTR_7g027235 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 524 |
| MS.gene88081.t1 | MTR_4g074260 | 93.077 | 260 | 17 | 1 | 1 | 260 | 1 | 259 | 2.65e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88081.t1 | AT3G62870 | 82.308 | 260 | 42 | 1 | 1 | 260 | 1 | 256 | 2.40e-160 | 445 |
| MS.gene88081.t1 | AT2G47610 | 86.008 | 243 | 34 | 0 | 18 | 260 | 15 | 257 | 7.28e-159 | 441 |
Find 68 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7.1:+69776175 | None:intergenic |
| GAACTACCTTGATGGCTTCT+AGG | 0.250413 | 7.1:+69776379 | None:intergenic |
| GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7.1:-69776225 | MS.gene88081:CDS |
| GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7.1:-69778422 | MS.gene88081:CDS |
| AGACCGTATTTCACATTAAT+AGG | 0.281467 | 7.1:+69776819 | None:intergenic |
| AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7.1:+69778380 | None:intergenic |
| CTCTGAATCTGAACCGTCTT+AGG | 0.320689 | 7.1:+69778347 | None:intergenic |
| CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7.1:-69776415 | MS.gene88081:CDS |
| AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7.1:-69778421 | MS.gene88081:CDS |
| AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7.1:-69776224 | MS.gene88081:CDS |
| TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7.1:-69776567 | MS.gene88081:CDS |
| CATTCTTTGAGCAGCTTCCT+TGG | 0.361728 | 7.1:+69776157 | None:intergenic |
| TCAAGTTTGAACTACCTTGA+TGG | 0.365851 | 7.1:+69776371 | None:intergenic |
| TTCTTCTTCGCTGCTGCAAC+TGG | 0.368855 | 7.1:+69778476 | None:intergenic |
| AGCCAGACAACAAGCTCAAT+AGG | 0.401792 | 7.1:+69776629 | None:intergenic |
| TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7.1:+69778276 | None:intergenic |
| GTCAAGGGCAAAGCACGTTT+GGG | 0.409984 | 7.1:-69776566 | MS.gene88081:CDS |
| TTTGCCCTCAGATTCGGCTT+GGG | 0.411077 | 7.1:+69776860 | None:intergenic |
| ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7.1:-69776250 | MS.gene88081:CDS |
| TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7.1:-69776606 | MS.gene88081:CDS |
| ACCCTATTGAGCTTGTTGTC+TGG | 0.422913 | 7.1:-69776631 | MS.gene88081:CDS |
| ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7.1:-69778370 | MS.gene88081:CDS |
| AGAAGGAACGTCTCCTGAAA+AGG | 0.442454 | 7.1:-69776884 | MS.gene88081:CDS |
| CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7.1:+69778413 | None:intergenic |
| TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7.1:+69776605 | None:intergenic |
| TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7.1:-69776258 | MS.gene88081:CDS |
| CAGTACCTGCTCAATAAGAT+AGG | 0.464452 | 7.1:+69776785 | None:intergenic |
| AAGCCTATTAATGTGAAATA+CGG | 0.473152 | 7.1:-69776822 | MS.gene88081:CDS |
| TGTCCTCAGGTCTGTACTTG+AGG | 0.476943 | 7.1:+69776916 | None:intergenic |
| AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7.1:-69776233 | MS.gene88081:CDS |
| GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7.1:+69778312 | None:intergenic |
| ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7.1:+69776931 | None:intergenic |
| GCCAGACAACAAGCTCAATA+GGG | 0.492274 | 7.1:+69776630 | None:intergenic |
| CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7.1:+69778383 | None:intergenic |
| CAGAATCCTAGAAGCCATCA+AGG | 0.506009 | 7.1:-69776385 | MS.gene88081:intron |
| GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7.1:-69778315 | MS.gene88081:CDS |
| TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7.1:-69776240 | MS.gene88081:CDS |
| GAAGGAACGTCTCCTGAAAA+GGG | 0.516781 | 7.1:-69776883 | MS.gene88081:CDS |
| CGTTACCTATCTTATTGAGC+AGG | 0.521902 | 7.1:-69776790 | MS.gene88081:intron |
| AATAGGCTTCTTTGTCTCGA+CGG | 0.529456 | 7.1:+69776836 | None:intergenic |
| TGAGGACAAAGCTGAAAAGA+AGG | 0.536121 | 7.1:-69776901 | MS.gene88081:CDS |
| TTCAGATTCAGAGGAAGAAG+AGG | 0.541607 | 7.1:-69778337 | MS.gene88081:CDS |
| GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7.1:+69776434 | None:intergenic |
| CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7.1:-69778382 | MS.gene88081:CDS |
| GAAGAATACAGCACTGAAAG+TGG | 0.550599 | 7.1:-69778459 | MS.gene88081:CDS |
| TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7.1:-69776241 | MS.gene88081:CDS |
| TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7.1:+69776577 | None:intergenic |
| AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7.1:-69776582 | MS.gene88081:CDS |
| AAGGGCCCAAGCCGAATCTG+AGG | 0.570757 | 7.1:-69776865 | MS.gene88081:CDS |
| TTAGTGAACTGGTTAAGAGC+AGG | 0.576262 | 7.1:+69778287 | None:intergenic |
| GCTCAATAGGGTCGACATCG+TGG | 0.579407 | 7.1:+69776642 | None:intergenic |
| GTTTGTGAAATGGCCTAAGA+CGG | 0.581897 | 7.1:-69778360 | MS.gene88081:CDS |
| CTCAATAGGGTCGACATCGT+GGG | 0.587513 | 7.1:+69776643 | None:intergenic |
| TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7.1:+69776578 | None:intergenic |
| CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7.1:-69778413 | MS.gene88081:CDS |
| AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7.1:-69778416 | MS.gene88081:CDS |
| ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7.1:-69776581 | MS.gene88081:CDS |
| CTAAGACGGTTCAGATTCAG+AGG | 0.624798 | 7.1:-69778346 | MS.gene88081:CDS |
| CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7.1:-69776174 | MS.gene88081:CDS |
| GTGAACTGGTTAAGAGCAGG+TGG | 0.627497 | 7.1:+69778290 | None:intergenic |
| AGGGCCCAAGCCGAATCTGA+GGG | 0.638813 | 7.1:-69776864 | MS.gene88081:CDS |
| AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7.1:-69778322 | MS.gene88081:CDS |
| GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7.1:-69776236 | MS.gene88081:CDS |
| GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7.1:-69776239 | MS.gene88081:CDS |
| CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7.1:-69776198 | MS.gene88081:CDS |
| TTACAGGCACCAAAGCGCGG+TGG | 0.676428 | 7.1:-69778506 | MS.gene88081:intron |
| GCTCCTCAAGTACAGACCTG+AGG | 0.716951 | 7.1:-69776919 | MS.gene88081:CDS |
| GCTCAATAAGATAGGTAACG+TGG | 0.726131 | 7.1:+69776793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAAATTTGTGTTTAAT+TGG | - | chr7.1:69776602-69776621 | MS.gene88081:CDS | 10.0% |
| !!! | TGATTTAATTTAATTGATAT+GGG | - | chr7.1:69777008-69777027 | MS.gene88081:intron | 10.0% |
| !!! | TTGATTTAATTTAATTGATA+TGG | - | chr7.1:69777007-69777026 | MS.gene88081:intron | 10.0% |
| !! | ATGTTTGATCAATAAAATTT+AGG | - | chr7.1:69776747-69776766 | MS.gene88081:intron | 15.0% |
| !! | ATTATTGAAATCATGATTAT+TGG | - | chr7.1:69777727-69777746 | MS.gene88081:intron | 15.0% |
| !!! | GATGTTAGTTTAATTTTTTT+TGG | - | chr7.1:69777526-69777545 | MS.gene88081:intron | 15.0% |
| !!! | GGTTATAATTGTTTAAAATA+AGG | - | chr7.1:69776830-69776849 | MS.gene88081:CDS | 15.0% |
| !!! | TTTGTTCTTTTTTAAGATAA+GGG | - | chr7.1:69777230-69777249 | MS.gene88081:intron | 15.0% |
| !!! | TTTTAGATTTGGTTTTAATT+TGG | - | chr7.1:69776550-69776569 | MS.gene88081:intron | 15.0% |
| !!! | TTTTGTTCTTTTTTAAGATA+AGG | - | chr7.1:69777229-69777248 | MS.gene88081:intron | 15.0% |
| !!! | TTTTTATGTTGTTGATTAAT+TGG | - | chr7.1:69776640-69776659 | MS.gene88081:CDS | 15.0% |
| !! | CAATGTTTGAACAAATTAAT+TGG | - | chr7.1:69776692-69776711 | MS.gene88081:intron | 20.0% |
| !! | GCTATTGTTATAGATTAATT+GGG | - | chr7.1:69776809-69776828 | MS.gene88081:CDS | 20.0% |
| !! | TAATGTGAAATGGTTTAATT+GGG | - | chr7.1:69777079-69777098 | MS.gene88081:intron | 20.0% |
| !! | TAGCTCATTTGATTATAAAA+TGG | - | chr7.1:69776518-69776537 | MS.gene88081:intron | 20.0% |
| !! | TGCTATTGTTATAGATTAAT+TGG | - | chr7.1:69776808-69776827 | MS.gene88081:CDS | 20.0% |
| !! | TTAATGTGAAATGGTTTAAT+TGG | - | chr7.1:69777078-69777097 | MS.gene88081:intron | 20.0% |
| !! | TTTATGTGTAATGCTTTAAT+GGG | - | chr7.1:69776575-69776594 | MS.gene88081:CDS | 20.0% |
| !!! | GGTTAATTTTATTGAACTAT+CGG | + | chr7.1:69778434-69778453 | None:intergenic | 20.0% |
| !!! | TAATTTTTTTTGGAACATGT+TGG | - | chr7.1:69777536-69777555 | MS.gene88081:intron | 20.0% |
| !!! | TTGATTAATTGGTTTTAGTT+TGG | - | chr7.1:69776651-69776670 | MS.gene88081:CDS | 20.0% |
| !!! | TTTTTTACCTTCTATTTTTC+AGG | - | chr7.1:69778465-69778484 | MS.gene88081:CDS | 20.0% |
| ! | AAGCCTATTAATGTGAAATA+CGG | - | chr7.1:69777925-69777944 | MS.gene88081:intron | 25.0% |
| ! | AAGTTTCATTTCTTTGTTCT+GGG | - | chr7.1:69777181-69777200 | MS.gene88081:intron | 25.0% |
| ! | ATCCAAAAATCACAAAACAA+TGG | + | chr7.1:69777709-69777728 | None:intergenic | 25.0% |
| ! | ATGGTATTTGATATGTGTAA+TGG | - | chr7.1:69776958-69776977 | MS.gene88081:intron | 25.0% |
| ! | GGAAATAGTATATGATAGTT+TGG | - | chr7.1:69777474-69777493 | MS.gene88081:intron | 25.0% |
| ! | GTCACAAATTATAAATTCAC+AGG | + | chr7.1:69778245-69778264 | None:intergenic | 25.0% |
| ! | GTTTATGTGTAATGCTTTAA+TGG | - | chr7.1:69776574-69776593 | MS.gene88081:CDS | 25.0% |
| ! | TAACTTTAACGACAAATTTG+AGG | - | chr7.1:69778489-69778508 | MS.gene88081:CDS | 25.0% |
| ! | TACCAATCAAAAACAAAAGA+CGG | + | chr7.1:69777614-69777633 | None:intergenic | 25.0% |
| ! | TACTTGTTCATATAACCAAA+AGG | + | chr7.1:69777990-69778009 | None:intergenic | 25.0% |
| ! | TGGTATTTGATATGTGTAAT+GGG | - | chr7.1:69776959-69776978 | MS.gene88081:intron | 25.0% |
| !! | GCGATTATGTTAATTTTTAC+AGG | - | chr7.1:69776225-69776244 | MS.gene88081:CDS | 25.0% |
| !! | GGTGATTATGATTTTAGATT+TGG | - | chr7.1:69776539-69776558 | MS.gene88081:intron | 25.0% |
| !!! | CAAATTAATTGGTCTTAGTT+TGG | - | chr7.1:69776703-69776722 | MS.gene88081:intron | 25.0% |
| !!! | TGTTTATTTTATCGATTGCA+TGG | - | chr7.1:69777453-69777472 | MS.gene88081:intron | 25.0% |
| !!! | TGTTTATTTTGTCTATTGCT+TGG | - | chr7.1:69777307-69777326 | MS.gene88081:intron | 25.0% |
| AAGACACTCGATAAAAATCT+CGG | - | chr7.1:69776481-69776500 | MS.gene88081:intron | 30.0% | |
| ACCAATCAAAAACAAAAGAC+GGG | + | chr7.1:69777613-69777632 | None:intergenic | 30.0% | |
| AGACCGTATTTCACATTAAT+AGG | + | chr7.1:69777931-69777950 | None:intergenic | 30.0% | |
| AGGTAAAAAACGAACAGAAA+TGG | + | chr7.1:69778455-69778474 | None:intergenic | 30.0% | |
| ATCACAAATACGATAGTCTT+CGG | + | chr7.1:69777589-69777608 | None:intergenic | 30.0% | |
| ATTCACAGGTGAAAATTCTA+TGG | + | chr7.1:69778231-69778250 | None:intergenic | 30.0% | |
| ATTGGGTGGTTGTTAAAATT+TGG | - | chr7.1:69777096-69777115 | MS.gene88081:intron | 30.0% | |
| ATTTGACAAGGTTTGTGAAA+TGG | - | chr7.1:69776377-69776396 | MS.gene88081:intron | 30.0% | |
| GAAGTTTCATTTCTTTGTTC+TGG | - | chr7.1:69777180-69777199 | MS.gene88081:intron | 30.0% | |
| GATTTCGTGTTAATGTGAAA+TGG | - | chr7.1:69777069-69777088 | MS.gene88081:intron | 30.0% | |
| GCGTTTCAGAATAAGTTATA+AGG | + | chr7.1:69776207-69776226 | None:intergenic | 30.0% | |
| GTATATGATAGTTTGGACTT+TGG | - | chr7.1:69777481-69777500 | MS.gene88081:intron | 30.0% | |
| TGTTTATTATGTTGAGTGCT+TGG | - | chr7.1:69776933-69776952 | MS.gene88081:CDS | 30.0% | |
| TTCTTACTAACAGTTACTTG+TGG | - | chr7.1:69778047-69778066 | MS.gene88081:intron | 30.0% | |
| TTGGATAGTATGTGATAGTT+TGG | - | chr7.1:69777326-69777345 | MS.gene88081:intron | 30.0% | |
| TTGGGTGGTTGTTAAAATTT+GGG | - | chr7.1:69777097-69777116 | MS.gene88081:intron | 30.0% | |
| ! | AAGTTAGCCTGAAAAATAGA+AGG | + | chr7.1:69778475-69778494 | None:intergenic | 30.0% |
| ! | CATTTTGTCTTCATTCTTGA+CGG | + | chr7.1:69778334-69778353 | None:intergenic | 30.0% |
| !! | GACCATTGTTTTGTGATTTT+TGG | - | chr7.1:69777704-69777723 | MS.gene88081:intron | 30.0% |
| !!! | GTTTTGACTATGACTATTGA+AGG | - | chr7.1:69777638-69777657 | MS.gene88081:intron | 30.0% |
| AACCTTGTCAAATCTCTCTT+TGG | + | chr7.1:69776370-69776389 | None:intergenic | 35.0% | |
| ACGACAAATTTGAGGAAAAC+AGG | - | chr7.1:69778497-69778516 | MS.gene88081:CDS | 35.0% | |
| AGTATCTGTACTCTCATACT+CGG | - | chr7.1:69778006-69778025 | MS.gene88081:intron | 35.0% | |
| CAAATCTCAAGCGAAAACAA+AGG | - | chr7.1:69778549-69778568 | MS.gene88081:intron | 35.0% | |
| CGTCAAGAATGAAGACAAAA+TGG | - | chr7.1:69778332-69778351 | MS.gene88081:CDS | 35.0% | |
| TCAAGTTTGAACTACCTTGA+TGG | + | chr7.1:69778379-69778398 | None:intergenic | 35.0% | |
| TGACTATTGAAGGTTCTGTA+TGG | - | chr7.1:69777648-69777667 | MS.gene88081:intron | 35.0% | |
| TGTGAAATGGTTTAATTGGG+TGG | - | chr7.1:69777082-69777101 | MS.gene88081:intron | 35.0% | |
| TTATGTTGAGTGCTTGGAAA+TGG | - | chr7.1:69776939-69776958 | MS.gene88081:CDS | 35.0% | |
| !! | TAGTTTGGACTTTGGAGTAA+TGG | - | chr7.1:69777489-69777508 | MS.gene88081:intron | 35.0% |
| !!! | CTTTGTTTTCGCTTGAGATT+TGG | + | chr7.1:69778551-69778570 | None:intergenic | 35.0% |
| AATAGGCTTCTTTGTCTCGA+CGG | + | chr7.1:69777914-69777933 | None:intergenic | 40.0% | |
| AATTCCCTACTGCATTGTCA+AGG | - | chr7.1:69778165-69778184 | MS.gene88081:intron | 40.0% | |
| AGAAGAGGCCAAAGCAATTT+GGG | - | chr7.1:69776326-69776345 | MS.gene88081:intron | 40.0% | |
| AGAGAGAGAGAGAGAGATTA+GGG | + | chr7.1:69776161-69776180 | None:intergenic | 40.0% | |
| ATTCCCTACTGCATTGTCAA+GGG | - | chr7.1:69778166-69778185 | MS.gene88081:intron | 40.0% | |
| CAAAGAAAGACTCATTGCCA+AGG | - | chr7.1:69778573-69778592 | MS.gene88081:intron | 40.0% | |
| CACCAAAGAGAGATTTGACA+AGG | - | chr7.1:69776365-69776384 | MS.gene88081:intron | 40.0% | |
| CAGTACCTGCTCAATAAGAT+AGG | + | chr7.1:69777965-69777984 | None:intergenic | 40.0% | |
| CGTTACCTATCTTATTGAGC+AGG | - | chr7.1:69777957-69777976 | MS.gene88081:intron | 40.0% | |
| CTTGGCAATGAGTCTTTCTT+TGG | + | chr7.1:69778575-69778594 | None:intergenic | 40.0% | |
| CTTGTCAAATCTCTCTTTGG+TGG | + | chr7.1:69776367-69776386 | None:intergenic | 40.0% | |
| GCTCAATAAGATAGGTAACG+TGG | + | chr7.1:69777957-69777976 | None:intergenic | 40.0% | |
| GTTTGTGAAATGGCCTAAGA+CGG | - | chr7.1:69776387-69776406 | MS.gene88081:CDS | 40.0% | |
| TATCGAGTGTCTTAGTGAAC+TGG | + | chr7.1:69776474-69776493 | None:intergenic | 40.0% | |
| TGAGGAAAACAGGAAGAAGT+GGG | - | chr7.1:69778507-69778526 | MS.gene88081:intron | 40.0% | |
| TGAGGACAAAGCTGAAAAGA+AGG | - | chr7.1:69777846-69777865 | MS.gene88081:intron | 40.0% | |
| TTAGTGAACTGGTTAAGAGC+AGG | + | chr7.1:69776463-69776482 | None:intergenic | 40.0% | |
| TTCAGATTCAGAGGAAGAAG+AGG | - | chr7.1:69776410-69776429 | MS.gene88081:CDS | 40.0% | |
| TTGAGGAAAACAGGAAGAAG+TGG | - | chr7.1:69778506-69778525 | MS.gene88081:intron | 40.0% | |
| TTGGCCTCTTCTCAAAAAGT+GGG | + | chr7.1:69776318-69776337 | None:intergenic | 40.0% | |
| TTTGGCCTCTTCTCAAAAAG+TGG | + | chr7.1:69776319-69776338 | None:intergenic | 40.0% | |
| ! | GAAGAATACAGCACTGAAAG+TGG | - | chr7.1:69776288-69776307 | MS.gene88081:intron | 40.0% |
| ! | TTTTCAGAACAAGGCACAAC+TGG | - | chr7.1:69778072-69778091 | MS.gene88081:intron | 40.0% |
| !! | ACTTGAGGAGCATCTTGAAA+AGG | + | chr7.1:69777819-69777838 | None:intergenic | 40.0% |
| !! | TTCTTTTCAGCTTTGTCCTC+AGG | + | chr7.1:69777847-69777866 | None:intergenic | 40.0% |
| !! | TTGGACTTTGGAGTAATGGT+AGG | - | chr7.1:69777493-69777512 | MS.gene88081:intron | 40.0% |
| !!! | CTTGTGGCTTTTTCAGAACA+AGG | - | chr7.1:69778063-69778082 | MS.gene88081:intron | 40.0% |
| !!! | GCCCGTCTTTTGTTTTTGAT+TGG | - | chr7.1:69777609-69777628 | MS.gene88081:intron | 40.0% |
| !!! | TGAACCCACTTTTTGAGAAG+AGG | - | chr7.1:69776311-69776330 | MS.gene88081:intron | 40.0% |
| AGAAGAGGATCCTTAAGCAG+AGG | - | chr7.1:69776425-69776444 | MS.gene88081:CDS | 45.0% | |
| AGAAGGAACGTCTCCTGAAA+AGG | - | chr7.1:69777863-69777882 | MS.gene88081:intron | 45.0% | |
| AGCCAGACAACAAGCTCAAT+AGG | + | chr7.1:69778121-69778140 | None:intergenic | 45.0% | |
| CAGAATCCTAGAAGCCATCA+AGG | - | chr7.1:69778362-69778381 | MS.gene88081:CDS | 45.0% | |
| CAGAGAGAGAGAGAGAGATT+AGG | + | chr7.1:69776162-69776181 | None:intergenic | 45.0% | |
| CATTCTTTGAGCAGCTTCCT+TGG | + | chr7.1:69778593-69778612 | None:intergenic | 45.0% | |
| CTAAGACGGTTCAGATTCAG+AGG | - | chr7.1:69776401-69776420 | MS.gene88081:CDS | 45.0% | |
| CTCTGAATCTGAACCGTCTT+AGG | + | chr7.1:69776403-69776422 | None:intergenic | 45.0% | |
| GAACCTTCAACCTCTGCTTA+AGG | + | chr7.1:69776438-69776457 | None:intergenic | 45.0% | |
| GAAGGAACGTCTCCTGAAAA+GGG | - | chr7.1:69777864-69777883 | MS.gene88081:intron | 45.0% | |
| GACGGTTGTCAAGCACAAAA+CGG | + | chr7.1:69778316-69778335 | None:intergenic | 45.0% | |
| GAGAAGAGGCCAAAGCAATT+TGG | - | chr7.1:69776325-69776344 | MS.gene88081:intron | 45.0% | |
| GAGGAAAACAGGAAGAAGTG+GGG | - | chr7.1:69778508-69778527 | MS.gene88081:intron | 45.0% | |
| GATCCTTAAGCAGAGGTTGA+AGG | - | chr7.1:69776432-69776451 | MS.gene88081:CDS | 45.0% | |
| GCCAGACAACAAGCTCAATA+GGG | + | chr7.1:69778120-69778139 | None:intergenic | 45.0% | |
| TCCATCTTTCTGCACAAAGC+TGG | + | chr7.1:69778145-69778164 | None:intergenic | 45.0% | |
| TTGCCCTTGACAATGCAGTA+GGG | + | chr7.1:69778172-69778191 | None:intergenic | 45.0% | |
| TTTGCCCTTGACAATGCAGT+AGG | + | chr7.1:69778173-69778192 | None:intergenic | 45.0% | |
| ! | AAGTGGGGTGGTGGTATTAT+GGG | - | chr7.1:69778523-69778542 | MS.gene88081:intron | 45.0% |
| ! | AGGCCAAAGCAATTTGGGAT+CGG | - | chr7.1:69776331-69776350 | MS.gene88081:intron | 45.0% |
| ! | GAACTACCTTGATGGCTTCT+AGG | + | chr7.1:69778371-69778390 | None:intergenic | 45.0% |
| ! | TCCAGCTTTGTGCAGAAAGA+TGG | - | chr7.1:69778141-69778160 | MS.gene88081:intron | 45.0% |
| ! | TTTTTACAGGCACCAAAGCG+CGG | - | chr7.1:69776238-69776257 | MS.gene88081:CDS | 45.0% |
| !! | ACCCTATTGAGCTTGTTGTC+TGG | - | chr7.1:69778116-69778135 | MS.gene88081:intron | 45.0% |
| CCACCGATCCCAAATTGCTT+TGG | + | chr7.1:69776337-69776356 | None:intergenic | 50.0% | |
| CTCAATAGGGTCGACATCGT+GGG | + | chr7.1:69778107-69778126 | None:intergenic | 50.0% | |
| GAAAACAGGAAGAAGTGGGG+TGG | - | chr7.1:69778511-69778530 | MS.gene88081:intron | 50.0% | |
| GTCAAGGGCAAAGCACGTTT+GGG | - | chr7.1:69778181-69778200 | MS.gene88081:intron | 50.0% | |
| GTGAACTGGTTAAGAGCAGG+TGG | + | chr7.1:69776460-69776479 | None:intergenic | 50.0% | |
| TGTCAAGGGCAAAGCACGTT+TGG | - | chr7.1:69778180-69778199 | MS.gene88081:intron | 50.0% | |
| TGTCCTCAGGTCTGTACTTG+AGG | + | chr7.1:69777834-69777853 | None:intergenic | 50.0% | |
| TTCTTCTTCGCTGCTGCAAC+TGG | + | chr7.1:69776274-69776293 | None:intergenic | 50.0% | |
| TTTGCCCTCAGATTCGGCTT+GGG | + | chr7.1:69777890-69777909 | None:intergenic | 50.0% | |
| ! | CCAAAGCAATTTGGGATCGG+TGG | - | chr7.1:69776334-69776353 | MS.gene88081:intron | 50.0% |
| ! | GAAGTGGGGTGGTGGTATTA+TGG | - | chr7.1:69778522-69778541 | MS.gene88081:intron | 50.0% |
| ! | GACGGTTTTGCCCTCAGATT+CGG | + | chr7.1:69777896-69777915 | None:intergenic | 50.0% |
| ! | TTTTGCCCTCAGATTCGGCT+TGG | + | chr7.1:69777891-69777910 | None:intergenic | 50.0% |
| AACAGGAAGAAGTGGGGTGG+TGG | - | chr7.1:69778514-69778533 | MS.gene88081:intron | 55.0% | |
| GCTCAATAGGGTCGACATCG+TGG | + | chr7.1:69778108-69778127 | None:intergenic | 55.0% | |
| GCTCCTCAAGTACAGACCTG+AGG | - | chr7.1:69777828-69777847 | MS.gene88081:intron | 55.0% | |
| !! | TGAGCAGGTACTGCGCCTTT+TGG | - | chr7.1:69777972-69777991 | MS.gene88081:intron | 55.0% |
| !!! | ATTCGGCTTGGGCCCTTTTC+AGG | + | chr7.1:69777879-69777898 | None:intergenic | 55.0% |
| AAGGGCCCAAGCCGAATCTG+AGG | - | chr7.1:69777882-69777901 | MS.gene88081:intron | 60.0% | |
| AGGGCCCAAGCCGAATCTGA+GGG | - | chr7.1:69777883-69777902 | MS.gene88081:intron | 60.0% | |
| TTACAGGCACCAAAGCGCGG+TGG | - | chr7.1:69776241-69776260 | MS.gene88081:CDS | 60.0% | |
| ! | GGTGCTTTTCCACCGCGCTT+TGG | + | chr7.1:69776253-69776272 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 69776151 | 69778618 | 69776151 | ID=MS.gene88081 |
| chr7.1 | mRNA | 69776151 | 69778618 | 69776151 | ID=MS.gene88081.t1;Parent=MS.gene88081 |
| chr7.1 | exon | 69778616 | 69778618 | 69778616 | ID=MS.gene88081.t1.exon1;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69778616 | 69778618 | 69778616 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| chr7.1 | exon | 69778267 | 69778522 | 69778267 | ID=MS.gene88081.t1.exon2;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69778267 | 69778522 | 69778267 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| chr7.1 | exon | 69776791 | 69776960 | 69776791 | ID=MS.gene88081.t1.exon3;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69776791 | 69776960 | 69776791 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| chr7.1 | exon | 69776562 | 69776690 | 69776562 | ID=MS.gene88081.t1.exon4;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69776562 | 69776690 | 69776562 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| chr7.1 | exon | 69776386 | 69776478 | 69776386 | ID=MS.gene88081.t1.exon5;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69776386 | 69776478 | 69776386 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| chr7.1 | exon | 69776151 | 69776282 | 69776151 | ID=MS.gene88081.t1.exon6;Parent=MS.gene88081.t1 |
| chr7.1 | CDS | 69776151 | 69776282 | 69776151 | ID=cds.MS.gene88081.t1;Parent=MS.gene88081.t1 |
| Gene Sequence |
| Protein sequence |
