Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052829.t1 | RHN78223.1 | 74.9 | 454 | 84 | 4 | 1 | 440 | 1 | 438 | 1.50E-174 | 622.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052829.t1 | Q8L3W1 | 23.5 | 336 | 210 | 9 | 7 | 298 | 4 | 336 | 8.0e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052829.t1 | A0A396JPN4 | 74.9 | 454 | 84 | 4 | 1 | 440 | 1 | 438 | 1.1e-174 | 622.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052829.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051957 | MS.gene052829 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene052843 | 0.946661 | 3.01E-105 | -1.69E-46 |
| MS.gene052829 | MS.gene05415 | 0.800576 | 1.35E-48 | -1.69E-46 |
| MS.gene052829 | MS.gene06269 | 0.812792 | 3.55E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene066335 | 0.803352 | 3.63E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene067208 | 0.807345 | 5.29E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene067656 | 0.81574 | 7.92E-52 | -1.69E-46 |
| MS.gene052829 | MS.gene068154 | 0.86658 | 2.57E-65 | -1.69E-46 |
| MS.gene052829 | MS.gene071441 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene072397 | -0.812529 | 4.05E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene072819 | 0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene24623 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene25778 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene31881 | 0.924534 | 6.19E-90 | -1.69E-46 |
| MS.gene052829 | MS.gene36496 | 0.803941 | 2.74E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene51459 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene51511 | 0.818908 | 1.53E-52 | -1.69E-46 |
| MS.gene052829 | MS.gene51836 | 0.807355 | 5.26E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene54195 | 0.804496 | 2.10E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene54842 | 0.831384 | 1.72E-55 | -1.69E-46 |
| MS.gene052829 | MS.gene58547 | 0.801648 | 8.15E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene64249 | 0.827161 | 1.82E-54 | -1.69E-46 |
| MS.gene052829 | MS.gene67746 | 0.812108 | 5.00E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene68999 | 0.817363 | 3.43E-52 | -1.69E-46 |
| MS.gene052829 | MS.gene71440 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene72268 | 0.826636 | 2.43E-54 | -1.69E-46 |
| MS.gene052829 | MS.gene74257 | 0.800838 | 1.19E-48 | -1.69E-46 |
| MS.gene052829 | MS.gene74367 | 0.809775 | 1.60E-50 | -1.69E-46 |
| MS.gene052829 | MS.gene75963 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene052829 | MS.gene76148 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene052829 | MS.gene76158 | 0.835913 | 1.27E-56 | -1.69E-46 |
| MS.gene052829 | MS.gene77781 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene80548 | 0.801363 | 9.33E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene82397 | -0.813679 | 2.27E-51 | -1.69E-46 |
| MS.gene052829 | MS.gene86086 | 0.803356 | 3.63E-49 | -1.69E-46 |
| MS.gene052829 | MS.gene98828 | 0.814329 | 1.63E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052829.t1 | MTR_1g035570 | 70.982 | 448 | 73 | 5 | 1 | 438 | 1 | 401 | 0.0 | 594 |
| MS.gene052829.t1 | MTR_1g035490 | 67.081 | 322 | 76 | 7 | 131 | 433 | 20 | 330 | 1.45e-129 | 377 |
| MS.gene052829.t1 | MTR_1g035640 | 46.092 | 499 | 168 | 11 | 1 | 432 | 1 | 465 | 1.14e-126 | 375 |
| MS.gene052829.t1 | MTR_1g035620 | 43.142 | 452 | 191 | 12 | 1 | 430 | 1 | 408 | 3.59e-107 | 323 |
| MS.gene052829.t1 | MTR_1g050845 | 41.429 | 420 | 168 | 12 | 1 | 398 | 1 | 364 | 2.38e-83 | 273 |
| MS.gene052829.t1 | MTR_6g061070 | 35.333 | 450 | 253 | 12 | 14 | 431 | 27 | 470 | 8.94e-77 | 247 |
| MS.gene052829.t1 | MTR_1g035650 | 42.424 | 231 | 92 | 5 | 1 | 218 | 1 | 203 | 2.06e-47 | 162 |
| MS.gene052829.t1 | MTR_8g103940 | 27.115 | 461 | 277 | 14 | 14 | 430 | 48 | 493 | 1.44e-39 | 149 |
| MS.gene052829.t1 | MTR_1g108780 | 26.940 | 464 | 267 | 14 | 20 | 430 | 12 | 456 | 4.44e-38 | 144 |
| MS.gene052829.t1 | MTR_7g050710 | 31.889 | 323 | 181 | 11 | 8 | 308 | 12 | 317 | 1.72e-34 | 131 |
| MS.gene052829.t1 | MTR_5g044670 | 29.801 | 302 | 180 | 7 | 14 | 302 | 25 | 307 | 1.26e-32 | 126 |
| MS.gene052829.t1 | MTR_7g050560 | 32.653 | 294 | 164 | 10 | 14 | 298 | 22 | 290 | 1.29e-32 | 125 |
| MS.gene052829.t1 | MTR_3g098790 | 31.741 | 293 | 177 | 8 | 14 | 298 | 22 | 299 | 1.37e-32 | 126 |
| MS.gene052829.t1 | MTR_7g050590 | 31.959 | 291 | 173 | 9 | 21 | 298 | 2 | 280 | 8.49e-31 | 120 |
| MS.gene052829.t1 | MTR_1g035510 | 33.641 | 217 | 129 | 7 | 21 | 234 | 2 | 206 | 9.87e-30 | 115 |
| MS.gene052829.t1 | MTR_7g050720 | 31.230 | 317 | 197 | 14 | 1 | 298 | 1 | 315 | 7.10e-29 | 115 |
| MS.gene052829.t1 | MTR_7g050580 | 33.447 | 293 | 163 | 10 | 14 | 298 | 22 | 290 | 9.08e-29 | 115 |
| MS.gene052829.t1 | MTR_1g035480 | 48.246 | 114 | 56 | 2 | 14 | 127 | 26 | 136 | 2.02e-28 | 110 |
| MS.gene052829.t1 | MTR_3g061310 | 28.053 | 303 | 173 | 11 | 9 | 296 | 12 | 284 | 2.64e-27 | 110 |
| MS.gene052829.t1 | MTR_1g033740 | 42.735 | 117 | 64 | 2 | 14 | 130 | 31 | 144 | 1.41e-26 | 106 |
| MS.gene052829.t1 | MTR_1g035460 | 23.059 | 425 | 233 | 13 | 21 | 381 | 2 | 396 | 1.41e-25 | 108 |
| MS.gene052829.t1 | MTR_3g061350 | 26.351 | 296 | 186 | 8 | 9 | 296 | 12 | 283 | 1.71e-25 | 105 |
| MS.gene052829.t1 | MTR_3g061340 | 27.609 | 297 | 171 | 13 | 9 | 296 | 12 | 273 | 2.03e-25 | 105 |
| MS.gene052829.t1 | MTR_3g061320 | 25.256 | 293 | 188 | 8 | 9 | 296 | 12 | 278 | 4.30e-24 | 101 |
| MS.gene052829.t1 | MTR_1g035500 | 45.133 | 113 | 59 | 2 | 14 | 126 | 34 | 143 | 9.12e-24 | 98.2 |
| MS.gene052829.t1 | MTR_3g061370 | 24.834 | 302 | 183 | 8 | 9 | 296 | 9 | 280 | 2.15e-23 | 99.8 |
| MS.gene052829.t1 | MTR_4g119990 | 27.362 | 307 | 193 | 9 | 9 | 296 | 15 | 310 | 2.64e-23 | 101 |
| MS.gene052829.t1 | MTR_6g043890 | 26.690 | 281 | 185 | 7 | 13 | 284 | 23 | 291 | 1.23e-22 | 98.6 |
| MS.gene052829.t1 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 21 | 130 | 2 | 108 | 3.22e-22 | 92.4 |
| MS.gene052829.t1 | MTR_1g035520 | 26.582 | 316 | 199 | 8 | 5 | 296 | 76 | 382 | 1.04e-20 | 93.6 |
| MS.gene052829.t1 | MTR_1g035520 | 42.478 | 113 | 55 | 3 | 329 | 431 | 271 | 383 | 1.16e-17 | 84.7 |
| MS.gene052829.t1 | MTR_3g061290 | 37.815 | 119 | 68 | 3 | 9 | 123 | 12 | 128 | 3.10e-19 | 85.9 |
| MS.gene052829.t1 | MTR_3g061330 | 31.548 | 168 | 105 | 5 | 9 | 168 | 12 | 177 | 9.11e-19 | 85.9 |
| MS.gene052829.t1 | MTR_1g034210 | 25.753 | 365 | 200 | 13 | 6 | 303 | 4 | 364 | 1.80e-17 | 84.0 |
| MS.gene052829.t1 | MTR_1g021270 | 23.975 | 317 | 190 | 10 | 17 | 286 | 27 | 339 | 1.56e-14 | 76.3 |
| MS.gene052829.t1 | MTR_3g005480 | 23.891 | 293 | 155 | 8 | 14 | 299 | 30 | 261 | 6.35e-14 | 72.0 |
| MS.gene052829.t1 | MTR_4g068320 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 4.21e-13 | 71.2 |
| MS.gene052829.t1 | MTR_7g050640 | 40.541 | 111 | 56 | 4 | 3 | 103 | 5 | 115 | 6.01e-13 | 65.5 |
| MS.gene052829.t1 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 1.92e-12 | 69.3 |
| MS.gene052829.t1 | MTR_3g005490 | 23.208 | 293 | 160 | 8 | 14 | 301 | 30 | 262 | 3.33e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052829.t1 | AT3G18990 | 26.254 | 339 | 203 | 11 | 7 | 301 | 4 | 339 | 1.72e-22 | 99.0 |
| MS.gene052829.t1 | AT3G18990 | 26.488 | 336 | 200 | 11 | 7 | 298 | 4 | 336 | 2.78e-22 | 97.8 |
Find 73 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1.4:+20606020 | MS.gene052829:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1.4:+20603811 | MS.gene052829:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1.4:+20605821 | MS.gene052829:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1.4:-20603676 | None:intergenic |
| CATTAACATCTTCAGATCTT+AGG | 0.260861 | 1.4:-20604519 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.4:-20603917 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.4:+20603680 | MS.gene052829:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.4:+20603767 | MS.gene052829:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1.4:+20604712 | MS.gene052829:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1.4:+20605990 | MS.gene052829:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.4:+20603838 | MS.gene052829:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1.4:-20603718 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.4:-20604882 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1.4:-20604930 | None:intergenic |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1.4:-20605121 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1.4:-20604924 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1.4:-20604102 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.4:-20603717 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1.4:-20604678 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1.4:+20605822 | MS.gene052829:CDS |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1.4:+20604713 | MS.gene052829:CDS |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1.4:-20604040 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1.4:-20605798 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1.4:+20605809 | MS.gene052829:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1.4:-20603726 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1.4:-20603893 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1.4:-20606020 | None:intergenic |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.4:+20604802 | MS.gene052829:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1.4:+20605927 | MS.gene052829:CDS |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1.4:+20605870 | MS.gene052829:CDS |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1.4:+20605882 | MS.gene052829:CDS |
| AAGATGATCCTATGAAAATC+TGG | 0.438926 | 1.4:-20603512 | None:intergenic |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1.4:+20604108 | MS.gene052829:CDS |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.4:+20603841 | MS.gene052829:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1.4:+20605112 | MS.gene052829:CDS |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1.4:+20605111 | MS.gene052829:CDS |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1.4:+20604486 | MS.gene052829:CDS |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1.4:+20605835 | MS.gene052829:CDS |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1.4:-20604548 | None:intergenic |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1.4:+20605888 | MS.gene052829:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1.4:+20605892 | MS.gene052829:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.4:-20603820 | None:intergenic |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1.4:+20604126 | MS.gene052829:CDS |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1.4:-20604547 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1.4:+20605092 | MS.gene052829:CDS |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1.4:+20605547 | MS.gene052829:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.4:+20603919 | MS.gene052829:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1.4:+20604030 | MS.gene052829:CDS |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1.4:+20604924 | MS.gene052829:CDS |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.4:+20604856 | MS.gene052829:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1.4:+20605079 | MS.gene052829:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1.4:+20604727 | MS.gene052829:CDS |
| TCCAGAAGGTCGTGATGTGA+AGG | 0.558641 | 1.4:+20605529 | MS.gene052829:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1.4:+20604014 | MS.gene052829:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1.4:+20604477 | MS.gene052829:intron |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 1.4:-20604581 | None:intergenic |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1.4:+20604790 | MS.gene052829:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1.4:+20603940 | MS.gene052829:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1.4:+20603721 | MS.gene052829:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1.4:+20604071 | MS.gene052829:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1.4:+20603669 | MS.gene052829:intron |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1.4:+20604717 | MS.gene052829:CDS |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1.4:+20605782 | MS.gene052829:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1.4:+20605082 | MS.gene052829:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1.4:+20604565 | MS.gene052829:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1.4:+20604734 | MS.gene052829:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.4:+20603685 | MS.gene052829:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1.4:+20605920 | MS.gene052829:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1.4:+20605823 | MS.gene052829:CDS |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1.4:+20604097 | MS.gene052829:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1.4:+20604748 | MS.gene052829:CDS |
| TTTCGTGAAGAACAAAACCC+TGG | 0.664414 | 1.4:+20605571 | MS.gene052829:CDS |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1.4:+20604471 | MS.gene052829:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATGTGATTTTTTT+TGG | + | chr1.4:20604329-20604348 | MS.gene052829:intron | 10.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1.4:20605250-20605269 | MS.gene052829:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.4:20605443-20605462 | None:intergenic | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1.4:20605326-20605345 | None:intergenic | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | - | chr1.4:20603896-20603915 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.4:20603782-20603801 | MS.gene052829:CDS | 15.0% |
| !!! | CAAATGTATCTAAATTTTTT+GGG | + | chr1.4:20605458-20605477 | MS.gene052829:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.4:20603783-20603802 | MS.gene052829:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.4:20603868-20603887 | MS.gene052829:CDS | 15.0% |
| !!! | TCAAATGTATCTAAATTTTT+TGG | + | chr1.4:20605457-20605476 | MS.gene052829:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1.4:20603744-20603763 | MS.gene052829:CDS | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1.4:20605160-20605179 | MS.gene052829:intron | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1.4:20604228-20604247 | MS.gene052829:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.4:20604949-20604968 | MS.gene052829:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1.4:20605159-20605178 | MS.gene052829:intron | 15.0% |
| !! | AGGTTAAAAGTTAATAGAAT+GGG | - | chr1.4:20605705-20605724 | None:intergenic | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.4:20604885-20604904 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1.4:20605765-20605784 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1.4:20605809-20605828 | MS.gene052829:CDS | 20.0% |
| !! | TATGTAATTATATCTTACCA+GGG | - | chr1.4:20605591-20605610 | None:intergenic | 20.0% |
| !! | TTATGTAATTATATCTTACC+AGG | - | chr1.4:20605592-20605611 | None:intergenic | 20.0% |
| !!! | AAAATGTGATTTTTTTTGGT+AGG | + | chr1.4:20604333-20604352 | MS.gene052829:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1.4:20603504-20603523 | MS.gene052829:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1.4:20603743-20603762 | MS.gene052829:CDS | 20.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1.4:20604453-20604472 | MS.gene052829:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1.4:20605821-20605840 | MS.gene052829:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1.4:20605870-20605889 | MS.gene052829:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1.4:20603823-20603842 | None:intergenic | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1.4:20605822-20605841 | MS.gene052829:CDS | 25.0% |
| ! | AATTGAACGAAAGTTAGTTA+TGG | - | chr1.4:20605647-20605666 | None:intergenic | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | + | chr1.4:20604780-20604799 | MS.gene052829:CDS | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1.4:20603680-20603699 | MS.gene052829:CDS | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1.4:20603721-20603740 | MS.gene052829:CDS | 25.0% |
| ! | ATTGAACGAAAGTTAGTTAT+GGG | - | chr1.4:20605646-20605665 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1.4:20603838-20603857 | MS.gene052829:CDS | 25.0% |
| ! | CTTGACAAGGTTATAAAAAA+GGG | + | chr1.4:20605038-20605057 | MS.gene052829:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1.4:20604550-20604569 | None:intergenic | 25.0% |
| ! | GAGGTTAAAAGTTAATAGAA+TGG | - | chr1.4:20605706-20605725 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1.4:20605412-20605431 | None:intergenic | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | + | chr1.4:20604713-20604732 | MS.gene052829:CDS | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | + | chr1.4:20604779-20604798 | MS.gene052829:CDS | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1.4:20603720-20603739 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1.4:20603679-20603698 | None:intergenic | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1.4:20605257-20605276 | MS.gene052829:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1.4:20604551-20604570 | None:intergenic | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1.4:20603841-20603860 | MS.gene052829:CDS | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | + | chr1.4:20604712-20604731 | MS.gene052829:CDS | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1.4:20603721-20603740 | None:intergenic | 25.0% |
| ! | TTGACAAGGTTATAAAAAAG+GGG | + | chr1.4:20605039-20605058 | MS.gene052829:intron | 25.0% |
| !! | CTTTTAACCTCTAATGTATA+AGG | + | chr1.4:20605715-20605734 | MS.gene052829:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1.4:20604696-20604715 | MS.gene052829:CDS | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1.4:20603919-20603938 | MS.gene052829:CDS | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | - | chr1.4:20604784-20604803 | None:intergenic | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1.4:20603747-20603766 | MS.gene052829:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1.4:20603920-20603939 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCTTGACA+AGG | + | chr1.4:20605025-20605044 | MS.gene052829:intron | 25.0% |
| AAAAAATATTGTATGGGTGG+TGG | + | chr1.4:20604786-20604805 | MS.gene052829:CDS | 30.0% | |
| AAATACCAAAGCAAACTCAA+AGG | + | chr1.4:20604097-20604116 | MS.gene052829:CDS | 30.0% | |
| AAGATGATCCTATGAAAATC+TGG | - | chr1.4:20603515-20603534 | None:intergenic | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1.4:20604584-20604603 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1.4:20604933-20604952 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1.4:20605823-20605842 | MS.gene052829:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1.4:20605920-20605939 | MS.gene052829:CDS | 30.0% | |
| CAGAAAAAATATTGTATGGG+TGG | + | chr1.4:20604783-20604802 | MS.gene052829:CDS | 30.0% | |
| CATTAACATCTTCAGATCTT+AGG | - | chr1.4:20604522-20604541 | None:intergenic | 30.0% | |
| CCTTGACAAGGTTATAAAAA+AGG | + | chr1.4:20605037-20605056 | MS.gene052829:intron | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1.4:20605990-20606009 | MS.gene052829:CDS | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1.4:20604652-20604671 | MS.gene052829:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.4:20603685-20603704 | MS.gene052829:CDS | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1.4:20605801-20605820 | None:intergenic | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | - | chr1.4:20604681-20604700 | None:intergenic | 30.0% | |
| TTAACCTCTAATGTATAAGG+TGG | + | chr1.4:20605718-20605737 | MS.gene052829:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.4:20603651-20603670 | MS.gene052829:intron | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.4:20603650-20603669 | MS.gene052829:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1.4:20603811-20603830 | MS.gene052829:CDS | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1.4:20605688-20605707 | None:intergenic | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1.4:20604236-20604255 | MS.gene052829:intron | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1.4:20604856-20604875 | MS.gene052829:CDS | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1.4:20604254-20604273 | MS.gene052829:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1.4:20603855-20603874 | MS.gene052829:CDS | 30.0% |
| !!! | ATTCTCAGGTTGATCTTTTT+TGG | + | chr1.4:20604140-20604159 | MS.gene052829:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1.4:20603739-20603758 | None:intergenic | 30.0% |
| !!! | CACCCATACAATATTTTTTC+TGG | - | chr1.4:20604785-20604804 | None:intergenic | 30.0% |
| !!! | CCTTTTTTATAACCTTGTCA+AGG | - | chr1.4:20605040-20605059 | None:intergenic | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1.4:20604151-20604170 | MS.gene052829:intron | 30.0% |
| !!! | TTCTCAGGTTGATCTTTTTT+GGG | + | chr1.4:20604141-20604160 | MS.gene052829:intron | 30.0% |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1.4:20605927-20605946 | MS.gene052829:CDS | 35.0% | |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1.4:20604014-20604033 | MS.gene052829:CDS | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1.4:20604126-20604145 | MS.gene052829:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1.4:20604043-20604062 | None:intergenic | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1.4:20605079-20605098 | MS.gene052829:CDS | 35.0% | |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1.4:20605049-20605068 | MS.gene052829:CDS | 35.0% | |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1.4:20605835-20605854 | MS.gene052829:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.4:20603767-20603786 | MS.gene052829:CDS | 35.0% | |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1.4:20605124-20605143 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1.4:20604659-20604678 | None:intergenic | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.4:20603757-20603776 | MS.gene052829:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1.4:20604727-20604746 | MS.gene052829:CDS | 35.0% |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1.4:20605120-20605139 | None:intergenic | 35.0% |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1.4:20604124-20604143 | None:intergenic | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1.4:20604497-20604516 | None:intergenic | 35.0% |
| AAGACATTGGAGGAACATCT+AGG | + | chr1.4:20605092-20605111 | MS.gene052829:CDS | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1.4:20605112-20605131 | MS.gene052829:CDS | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1.4:20605882-20605901 | MS.gene052829:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1.4:20604457-20604476 | MS.gene052829:intron | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1.4:20604565-20604584 | MS.gene052829:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1.4:20604108-20604127 | MS.gene052829:CDS | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1.4:20603729-20603748 | None:intergenic | 40.0% | |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1.4:20604924-20604943 | MS.gene052829:CDS | 40.0% | |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1.4:20603669-20603688 | MS.gene052829:intron | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1.4:20604071-20604090 | MS.gene052829:CDS | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | + | chr1.4:20604717-20604736 | MS.gene052829:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | + | chr1.4:20605082-20605101 | MS.gene052829:CDS | 40.0% | |
| GTGTCCACCTTATACATTAG+AGG | - | chr1.4:20605725-20605744 | None:intergenic | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1.4:20605111-20605130 | MS.gene052829:CDS | 40.0% | |
| TGTGTTTATGCATGTCCAGA+AGG | + | chr1.4:20605515-20605534 | MS.gene052829:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1.4:20604468-20604487 | None:intergenic | 40.0% | |
| TTTCGTGAAGAACAAAACCC+TGG | + | chr1.4:20605571-20605590 | MS.gene052829:CDS | 40.0% | |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1.4:20604927-20604946 | None:intergenic | 40.0% |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1.4:20604790-20604809 | MS.gene052829:CDS | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1.4:20604802-20604821 | MS.gene052829:CDS | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1.4:20604916-20604935 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1.4:20604477-20604496 | MS.gene052829:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | + | chr1.4:20604486-20604505 | MS.gene052829:CDS | 45.0% | |
| CTTGGCAGGTAGTAACAAAG+TGG | + | chr1.4:20604471-20604490 | MS.gene052829:intron | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1.4:20604030-20604049 | MS.gene052829:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1.4:20605892-20605911 | MS.gene052829:CDS | 45.0% | |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1.4:20605782-20605801 | MS.gene052829:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1.4:20605888-20605907 | MS.gene052829:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | - | chr1.4:20604105-20604124 | None:intergenic | 45.0% |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1.4:20605547-20605566 | MS.gene052829:CDS | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1.4:20604734-20604753 | MS.gene052829:CDS | 45.0% |
| !! | ATAAATAATAAATACTTAAT+TGG | + | chr1.4:20604384-20604403 | MS.gene052829:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1.4:20605222-20605241 | MS.gene052829:intron | 5.0% |
| TCCAGAAGGTCGTGATGTGA+AGG | + | chr1.4:20605529-20605548 | MS.gene052829:intron | 50.0% | |
| TCCTTCACATCACGACCTTC+TGG | - | chr1.4:20605533-20605552 | None:intergenic | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1.4:20603940-20603959 | MS.gene052829:CDS | 50.0% |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1.4:20604748-20604767 | MS.gene052829:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 20603494 | 20606040 | 20603494 | ID=MS.gene052829 |
| chr1.4 | mRNA | 20603494 | 20606040 | 20603494 | ID=MS.gene052829.t1;Parent=MS.gene052829 |
| chr1.4 | exon | 20603494 | 20603550 | 20603494 | ID=MS.gene052829.t1.exon1;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20603494 | 20603550 | 20603494 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20603670 | 20604147 | 20603670 | ID=MS.gene052829.t1.exon2;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20603670 | 20604147 | 20603670 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20604479 | 20604597 | 20604479 | ID=MS.gene052829.t1.exon3;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20604479 | 20604597 | 20604479 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20604672 | 20604945 | 20604672 | ID=MS.gene052829.t1.exon4;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20604672 | 20604945 | 20604672 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20605047 | 20605133 | 20605047 | ID=MS.gene052829.t1.exon5;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20605047 | 20605133 | 20605047 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20605534 | 20605592 | 20605534 | ID=MS.gene052829.t1.exon6;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20605534 | 20605592 | 20605534 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| chr1.4 | exon | 20605792 | 20606040 | 20605792 | ID=MS.gene052829.t1.exon7;Parent=MS.gene052829.t1 |
| chr1.4 | CDS | 20605792 | 20606040 | 20605792 | ID=cds.MS.gene052829.t1;Parent=MS.gene052829.t1 |
| Gene Sequence |
| Protein sequence |
