AlfalfaGEDB | MS.gene07979

M. sativa cultivar XinJiangDaYe / MS.gene07979

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF01408.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07979.t1	XP_013451947.1	97	361	11	0	1	361	1	361	1.20E-201	712.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07979.t1	Q9SZ83	63.5	359	131	0	1	359	1	359	1.4e-137	490.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07979.t1	A0A072UJH2	97.0	361	11	0	1	361	1	361	8.7e-202	712.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene07979	0.827367	1.63E-54	-1.69E-46
MS.gene049173	MS.gene07979	0.809351	1.97E-50	-1.69E-46
MS.gene049217	MS.gene07979	0.803381	3.58E-49	-1.69E-46
MS.gene049351	MS.gene07979	0.806911	6.53E-50	-1.69E-46
MS.gene049369	MS.gene07979	0.80886	2.52E-50	-1.69E-46
MS.gene049427	MS.gene07979	0.861388	1.06E-63	-1.69E-46
MS.gene049661	MS.gene07979	0.819577	1.08E-52	-1.69E-46
MS.gene049662	MS.gene07979	0.811522	6.71E-51	-1.69E-46
MS.gene049805	MS.gene07979	0.818952	1.50E-52	-1.69E-46
MS.gene050301	MS.gene07979	0.804806	1.81E-49	-1.69E-46

Showing 1 to 10 of 87 entries

Previous1 2 3 4 5…9Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07979.t1	MTR_6g038640	96.953	361	11	0	1	361	1	361	0.0	724
MS.gene07979.t1	MTR_6g038650	93.352	361	19	2	1	361	1	356	0.0	689
MS.gene07979.t1	MTR_1g097250	70.141	355	106	0	7	361	6	360	0.0	531
MS.gene07979.t1	MTR_6g038390	62.011	358	136	0	3	360	5	362	7.64e-174	488
MS.gene07979.t1	MTR_6g038350	63.408	358	131	0	3	360	5	362	1.37e-168	474
MS.gene07979.t1	MTR_6g038370	63.408	358	131	0	3	360	5	362	1.37e-168	474
MS.gene07979.t1	MTR_6g066230	55.096	363	158	2	1	359	1	362	2.17e-148	423
MS.gene07979.t1	MTR_3g064900	53.994	363	163	2	1	359	1	363	1.33e-139	401
MS.gene07979.t1	MTR_6g038310	63.934	122	43	1	3	123	5	126	5.52e-42	143

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07979.t1	AT4G09670	63.510	359	131	0	1	359	1	359	1.11e-179	503
MS.gene07979.t1	AT1G34200	57.263	358	141	2	1	357	1	347	5.36e-149	424
MS.gene07979.t1	AT1G66130	43.478	368	195	7	1	359	1	364	4.05e-97	293

Showing 1 to 3 of 3 entries

Previous1Next

Find 97 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCAGATCTCGACGCTCT+TGG	0.439470	6.3:+32174746	MS.gene07979:CDS
AATAGAAAACGATCTCCCTC+AGG	0.562369	6.3:+32175117	MS.gene07979:CDS
AATGCCGAAACGGATTGGTT+CGG	0.512845	6.3:-32171560	None:intergenic
AATGGCGCGTGAGAGTTTGC+GGG	0.557508	6.3:-32171602	None:intergenic
ACAATGGATATAACTGCTGT+TGG	0.509647	6.3:+32174962	MS.gene07979:CDS
ACATGCAACGTCGTCGGTAA+CGG	0.555872	6.3:-32171781	None:intergenic
ACCGCCACCATCTCCGCCGT+CGG	0.570452	6.3:+32171637	MS.gene07979:CDS
ACGCGAAACCGGAGAAGAAA+TGG	0.375990	6.3:+32175194	MS.gene07979:CDS
ACGTAAACAGCGTCAACATT+AGG	0.295512	6.3:-32171757	None:intergenic
ACTCCAGCTTTATTAAGCAC+TGG	0.541763	6.3:-32174860	None:intergenic

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTACGTGACATTAACC+AGG	-	chr6.3:32174199-32174218	None:intergenic	30.0%
ACGAGTACATTTGATATGTT+GGG	-	chr6.3:32173329-32173348	None:intergenic	30.0%
AGGATAATAGAAGTGGTTTA+GGG	+	chr6.3:32172550-32172569	MS.gene07979:intron	30.0%
AGTTTCTGTACCACATAAAA+TGG	+	chr6.3:32173392-32173411	MS.gene07979:intron	30.0%
ATTCAGTGTAATTATCTGTG+TGG	-	chr6.3:32172136-32172155	None:intergenic	30.0%
CACTGATATATGGTTTGATT+TGG	+	chr6.3:32174653-32174672	MS.gene07979:intron	30.0%
CATTATCTATACTCATCCAA+TGG	+	chr6.3:32173422-32173441	MS.gene07979:intron	30.0%
GATTAACAAAAGGACTACAT+TGG	-	chr6.3:32173615-32173634	None:intergenic	30.0%
GTTCAATAATGAGTCTCTAA+GGG	-	chr6.3:32174405-32174424	None:intergenic	30.0%
GTTTCTGTACCACATAAAAT+GGG	+	chr6.3:32173393-32173412	MS.gene07979:intron	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	32171550	32175306	32171550	ID=MS.gene07979
chr6.3	mRNA	32171550	32175306	32171550	ID=MS.gene07979.t1;Parent=MS.gene07979
chr6.3	exon	32171550	32172014	32171550	ID=MS.gene07979.t1.exon1;Parent=MS.gene07979.t1
chr6.3	CDS	32171550	32172014	32171550	ID=cds.MS.gene07979.t1;Parent=MS.gene07979.t1
chr6.3	exon	32174686	32175306	32174686	ID=MS.gene07979.t1.exon2;Parent=MS.gene07979.t1
chr6.3	CDS	32174686	32175306	32174686	ID=cds.MS.gene07979.t1;Parent=MS.gene07979.t1

Gene Sequence

>MS.gene07979

ATGTCACAAACCGAACCAATCCGTTTCGGCATTCTCGGCTGTGCCGACATAGCCCGCAAACTCTCACGCGCCATTCTCCTCTCTTCCACCGCCACCATCTCCGCCGTCGGCAGCCGCACTCTCTCCAAAGCAACCACCTTCGCACACTCCAACAACTTCCCTCCCACCGCCAAAATCTACGGCTCCTATGAAGAAGTTCTTGACGACCCTAATGTTGACGCTGTTTACGTGCCGTTACCGACGACGTTGCATGTGAAGTGGGCGGTGGCTGCGGCGAAGAAGGGGAAGCATGTTTTGCTTGAGAAGCCTGTGGCGGTTAGTGTGAAGGAGTTTGATGAGATTGTGAAGGTGTGTGAGGAATGTGGGGTGCAGTTTATGGATGGGACTATGTGGATGCATCATCCTAGAACGGAGGTGATGAAGGGGTTTTTGGAGGATGAGGAGAGGTTTGGGAAGGTTAAATCGGTACGTGTTTATGTTTTGTTTTGATAATGTTGATGTATAAACTAGGAAAGACTGACACTCCTCGGATTAGACGTGTCTTGGTGTCGGACACGTGTTGTCTCCGACACCAGCACGACACCCACACAGATAATTACACTGAATTATGTGATTATCTAAAATTATTAGCGGTGTCACGTCAAGTGTTTGTATGCTTCATAGTGTACGAAATACCAATGTAGACACTGACACGAAGAAACGTAGATACCGATGATAATTTAATAAAGAGGAATGCTAGCAATACTCTCTTTCTAACAAATCCGCGTGGATTTGATGACATTATGCCGGACCCATTTCTGAAATGTGGGACCCACATGAATTTCATCCAATAAAATAGTGAGTGTTGGAAAGTAAATGTTGCTAGCTCTCCTCTTTAAGAAAATAGAAGCGATTTAGGGTTTAAATTTGTATGTGTTTGTGTTTTGATGACATTGATATATGAATCACTAATGCAGACACTTGACACGAGACTGACATAGTATGATATTGATGATGATTTAGGATAATAGAAGTGGTTTAGGGTATGTTTGTTACTGATTATAAAAAAATTATTTTGTCATTCTAGATTATTTTTTAGAGATTTAGGGTTCATTTGTTATGGATTATAAATAATGTGATTTCGATAATCAATAATTAAGAGATTAAATTTTAGAGATAAGCAGAAGCTGTGTTTGTGTGGAGGATGGGGAGAGGTTTGGGCAGGTTATTTGTTTTGATAATATTGATGTATAAATCACTTATACAGACACCTGACATGATACTGACAGATAGACATGTAGATATTGACAATAATTTAAGAAAATAGAAGTGATTTGGGGTTAAAACGGTGTGTGTTCATGTTTTATTAACATTAATGTATGAAGCTAAAAGGGATTTAGGCTCTGTTTTTCACGGATTTATGAAACATGATTTTAATGTTATGGATTGATTTTTAGAGATTAGATCACTTTTATACGGATTATAAAAAAGTGAGTTTGATACTCAAGAAACATAGGTAGTCTTTAAAGTATATATAACATCAGTACTAATATGACTGATTTGTATAAATAATGAGAATGTAGGAGAAAGATGATACTTGATATTTGGTATTAATGTCTGTACGAGCAAGAGGCCTCACTAGTTTACGCTTACAGCTGCTCTGTTCTATGTAGCCTTTGAATTGTTTTTTGTACCTAGCGGCGAAGTTCACACACACTTTTTGTACCTAGCGGCGAAGTTCACACACACTAATTGCGGAGAAAAGAAGCATTGCGGGTTGCGGGTTCAAATCCGCGCCCCAACATATCAAATGTACTCGTAGATTTTTATTGACTGAGCTGCAATTATAGGACATAACAATTGAGTTTCTGTACCACATAAAATGGGCTTGTGCATTATCTATACTCATCCAATGGGCTATTGTTTGGGGGGTTGGTTAGGTGTAAGAGTCATTCATAATCTTAGACCTGAGCTTATCAAATGAGTGAATCGTCATTTTAGCTATTGAAATTATAAGAGTTAGACGGTTTATTCCGCCAAGTATATGAAGGTTGTATTAGTTTATGAATTTGAAAATCTTCAACCAATGTAGTCCTTTTGTTAATCAGCGGGGCTTTACTTTCTTGCTTGTTTTCTCCTATTGTTTTTGCTGTCGTTGCTTTGCCTACTGGTGCTTGTTTTCACCAAGTGTGTTGGCCTTTGCATCTTTGGGTTTCTTTTATTCCCTTGCCTTTTTGCAGTTCTTTGTGCTGGGCGTTTTTAATGAATATTCTGTTTCAAAAAAAATCAATGTAGCCCTTTCTTCAGCTAATTCAGTAAATTCTGATGAATTTGGGTCGCATAATAGAGATCAGCAGAAGGTTTAAACAAATATCTGAAAACATACTTCAGCTGAGCATGCTCTTAAGAATGTGCAAACTAAGCATTTTTTATCCAGTTAGATAGAAAGGGACTAAATTGATTATCGGTTATCAACTTCATGGACTGATTTTTCATTTCGTAAATTTGAAGGATTAAATCGTCCTGCCATAGAATTTAGATAACCAAAATGTTCAGTTACTCTTAAAATTCTTTGTTTTTGAACAATAGTCGCAAGTTTAAGTTGGCTTAGTGTATAGATAATGGTTCTGTGTCAAAAGAAAATTATAGAGAAGAGTTAAAAAAAATCCTGGTTAATGTCACGTAATTTTTCATTTTGGCTTAAGATGAAAAAACAGACATTGCTTTGTGTTTTTTTAGTTGTCTTCTCATTGATACTTCATCGTTTAGTTAAGCTGTTGTTTGTCTGACATTGAAACCCTGCTGCATGCCTGGCGTTTCTTCTGAATCAAATGGCGCGTGTTGTATTTGTTGACGATGTCTTGGTCTCCTTTCCCTTAGAGACTCATTATTGAACATAAAATAAACTAAATTATGACTTTCTATAAGACGTTTAAGTATTAACTATAAGCTAGATCCAAAATTAAGAACCAACAGAAAGCTATAGTATTGATGTAAATTTGAACAATTTTATAGCTGTTGTATATGTGTTCGTATGCTTCAATCCCAATCTTAAACATTAAGTTTTCAACCAACAGTTATTATGCTGTGTTATAAATGATATATCTTTTCCGTACATGTTCTGCACTGATATATGGTTTGATTTGGCATTGCACAGATTCACACCTGCTTTACATTTGGTGCTGATCCTGATTTTCTCGAGAACGACATTCGTGTGAAGCCAGATCTCGACGCTCTTGGCTCTCTTGGCGACGAAGGATGGTATTGTGTTAGAGCAATTCTGTGGGCTAACAATTACGAATTACCTAAAACAGTATTAGCGTATCGCGAGCCAGTGCTTAATAAAGCTGGAGTGATTCTATCTTGTGGCGCTTCTTTATATTGGGAAGATGGAAGAGTAGCAACATTCTATTGCTCTTTCTTATCTAACCTAACAATGGATATAACTGCTGTTGGGACAAAAGGAACACTTCATGTTCATGATTTTATCATTCCTTATGAAGAAAAGAAAGCATCATTTTATGCAGCTTCAGAATCAAGCTTTGATGATCTTGTCACTAGATGGGGTTCGCAGCCGAGTAAGCACGTAATAGAAAACGATCTCCCTCAGGAGGCTCTTATGGTAACCGAATTTTCTCATTTGGTGGCAGAAATCAAATTCAAAAACGCGAAACCGGAGAAGAAATGGCCGACTATTAGTAGGAAAACACAACTGATTTTGGATGCCGTGAAGGCTTCGATTGATAAGGGTTTTGAGCCTGTACAGATTCAGGAATGA

Protein sequence

>MS.gene07979.t1

MSQTEPIRFGILGCADIARKLSRAILLSSTATISAVGSRTLSKATTFAHSNNFPPTAKIYGSYEEVLDDPNVDAVYVPLPTTLHVKWAVAAAKKGKHVLLEKPVAVSVKEFDEIVKVCEECGVQFMDGTMWMHHPRTEVMKGFLEDEERFGKVKSIHTCFTFGADPDFLENDIRVKPDLDALGSLGDEGWYCVRAILWANNYELPKTVLAYREPVLNKAGVILSCGASLYWEDGRVATFYCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKKASFYAASESSFDDLVTRWGSQPSKHVIENDLPQEALMVTEFSHLVAEIKFKNAKPEKKWPTISRKTQLILDAVKASIDKGFEPVQIQE