AlfalfaGEDB | MS.gene22144

M. sativa cultivar XinJiangDaYe / MS.gene22144

KEGG: -
GO: -
PFAM: PF03732.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22144.t1	XP_003599832.1	91.8	170	14	0	265	434	11	180	1.70E-77	300.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22144.t1	G7IXV5	91.8	170	14	0	265	434	11	180	1.2e-77	300.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene22144	0.810009	1.43E-50	-1.69E-46
MS.gene049159	MS.gene22144	0.800013	1.76E-48	-1.69E-46
MS.gene049254	MS.gene22144	0.843581	1.28E-58	-1.69E-46
MS.gene049404	MS.gene22144	0.82877	7.47E-55	-1.69E-46
MS.gene049435	MS.gene22144	0.810049	1.40E-50	-1.69E-46
MS.gene049501	MS.gene22144	0.814248	1.70E-51	-1.69E-46
MS.gene050237	MS.gene22144	0.820295	7.40E-53	-1.69E-46
MS.gene050442	MS.gene22144	0.814525	1.47E-51	-1.69E-46
MS.gene050559	MS.gene22144	0.81727	3.60E-52	-1.69E-46
MS.gene050561	MS.gene22144	0.821319	4.30E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22144.t1	MTR_3g047590	91.765	170	14	0	265	434	11	180	3.67e-109	319
MS.gene22144.t1	MTR_2g437280	40.244	82	49	0	89	170	21	102	3.57e-13	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22144.t1	AT1G06500	40.789	152	68	4	281	432	2	131	5.94e-28	108
MS.gene22144.t1	AT1G06500	40.789	152	68	4	281	432	2	131	5.94e-28	108
MS.gene22144.t1	AT1G06500	40.789	152	68	4	281	432	2	131	5.94e-28	108
MS.gene22144.t1	AT1G06500	40.789	152	68	4	281	432	2	131	5.94e-28	108

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Find 102 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGCCTGAGAAGCTGT+CGG	0.710195	3.4:+42527764	MS.gene22144:CDS
AACAGCATAACAGTCATATA+TGG	0.451995	3.4:+42527678	MS.gene22144:intron
AACAGTCATATATGGTCGGT+TGG	0.473831	3.4:+42527686	MS.gene22144:CDS
AACGTTAGACGGCGACGACC+TGG	0.520612	3.4:+42526825	MS.gene22144:intron
AAGAGTCAACCAGAAGAAAG+TGG	0.608610	3.4:+42528553	MS.gene22144:CDS
AAGCTGCGCAGGATCATGAG+CGG	0.675501	3.4:+42526659	MS.gene22144:CDS
AAGGGATAAAAGACCGTTTA+CGG	0.400335	3.4:+42527170	MS.gene22144:CDS
AATAACACAGTGGAATTGAT+CGG	0.588935	3.4:+42527819	MS.gene22144:CDS
ACACCGTGTTCGGAAAATTC+TGG	0.307317	3.4:-42528399	None:intergenic
ACAGTCATATATGGTCGGTT+GGG	0.511607	3.4:+42527687	MS.gene22144:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACAAAGTTGTAGCTA+TGG	+	chr3.4:42527339-42527358	MS.gene22144:intron	30.0%
AACAGCATAACAGTCATATA+TGG	+	chr3.4:42527678-42527697	MS.gene22144:intron	30.0%
AATAACACAGTGGAATTGAT+CGG	+	chr3.4:42527819-42527838	MS.gene22144:CDS	30.0%
ACTACTTCAAATAAATGGTG+GGG	+	chr3.4:42528484-42528503	MS.gene22144:CDS	30.0%
AGAAAATAGGCTATTGGAAA+TGG	+	chr3.4:42527967-42527986	MS.gene22144:intron	30.0%
GACTACTTCAAATAAATGGT+GGG	+	chr3.4:42528483-42528502	MS.gene22144:CDS	30.0%
TGAAGTGATCATAAAAGATG+TGG	+	chr3.4:42527942-42527961	MS.gene22144:intron	30.0%
TTTCGATAATGTAATCAGTG+AGG	-	chr3.4:42528102-42528121	None:intergenic	30.0%
AAAGCTGTTATGGTGACATT+CGG	+	chr3.4:42528060-42528079	MS.gene22144:intron	35.0%
AACTCTGTCATTAGGTAGAT+TGG	+	chr3.4:42527868-42527887	MS.gene22144:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	42526586	42528810	42526586	ID=MS.gene22144
chr3.4	mRNA	42526586	42528810	42526586	ID=MS.gene22144.t1;Parent=MS.gene22144
chr3.4	exon	42526586	42526733	42526586	ID=MS.gene22144.t1.exon1;Parent=MS.gene22144.t1
chr3.4	CDS	42526586	42526733	42526586	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1
chr3.4	exon	42526833	42526889	42526833	ID=MS.gene22144.t1.exon2;Parent=MS.gene22144.t1
chr3.4	CDS	42526833	42526889	42526833	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1
chr3.4	exon	42526957	42527295	42526957	ID=MS.gene22144.t1.exon3;Parent=MS.gene22144.t1
chr3.4	CDS	42526957	42527295	42526957	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1
chr3.4	exon	42527380	42527449	42527380	ID=MS.gene22144.t1.exon4;Parent=MS.gene22144.t1
chr3.4	CDS	42527380	42527449	42527380	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1
chr3.4	exon	42527683	42527859	42527683	ID=MS.gene22144.t1.exon5;Parent=MS.gene22144.t1
chr3.4	CDS	42527683	42527859	42527683	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1
chr3.4	exon	42528297	42528810	42528297	ID=MS.gene22144.t1.exon6;Parent=MS.gene22144.t1
chr3.4	CDS	42528297	42528810	42528297	ID=cds.MS.gene22144.t1;Parent=MS.gene22144.t1

Gene Sequence

>MS.gene22144

ATGGAGGCTAAGGTGAATGCAGTAACAAGTGAAGTTGCCACGCTCAAGCAAACCCTTGCTGAGATGCGTGTGCAAGCTGCGCAGGATCATGAGCGGTTGGTTTCGATTATTACTCGAAGCTGTGCAGGATCACGAGTGTTTTTCGAGTGTTAGATATTTTCGTCAGCCTTGGTCAACTTGACGACCAATAGATGAGTTTCGTCAAGCGGTGTTAGATATTGACGACCAATTGAACTTCCAACGTTAGACGGCGACGACCTGGCAAGATTGATCGCTCGTGCAGTTTGTCAGGACAGAACTATAGGTGAAGGTGAGTTTGGCTCACCTTTTCATGGATGGGATTACAATTATGTTTTTCAAAGCCTTATCAGAGGACGATCAATATCTGACATGGGAAAAGTTGAAGGATGCCTTGTGCGAGAAATATGGGGGACTCAGAGAGGCTAAGGTATATGAACAACTCTCTGTGTTACAACAAGATGGGAGTGTTGATGAATACATCAGAGAGTACGAGTCTTTAGTTTCTCAGGTGCATCGTTTACAGGAAGCGCAGTATGTTCAGTACTTCATCCATGGACACGAGAAAGGGATAAAAGACCGTTTACGGAACTTGATTGTGATGGGTCTGGTCACACAGGCAAAATTGTTGAACATAGCACTAGCAGTGGAGATGGATACGCAGGAGAAGAAATGGAACTGGACCAGGACATGTTAAGCTTGTTGCAATGGGTGGATGTAATGTAGAGAAAATAGAAACAACAAAGTTGTAGCTATGGTGGAAATTTGCAGTGTAGCCGATGGTAGCAAACACAGTCGAGTTTTCTGGAAGATTTCTAAGGTGGATGTGGTGGTTTTTAGGAATAGGTCTCACTAGAGAAACTGTAGCGCATGAGCTGGTATCAATTCTTTTATCATTCGAATTGTTTCAGTCTTGTAGGAAGGGCCTGGTAGTTGAATCATCGCTAGATGCTAAGAGAAGTACACCGATGGAAAAGAGAAACAATGGATGAACCAAACTAAATTTTCTCAGCAGGAAAGAAACAAACGACAAAATGAAACAACTGACAAAACGATACCTAACGTGATGTGCACAACAGCATAACAGTCATATATGGTCGGTTGGGTTTTGGGAGTGGCTGGGCATGGAATAGACCCATGCTAGAGATGCTGTGCCATGAAAACTGGCCTGAGAAGCTGTCGGATGCGCACCATGCAAGAGACCCAAAAAAATCCAATAACACAGTGGAATTGATCGGCGTGAGCCAACAGCGTATGTGTGTGAAACTCTGTCATTAGGTAGATTGGAAGGAGTTGCTTCTGATGACAGGTTCGTTTTGTCAGCAGTTAAGTAGTGGCTGAAGTGATCATAAAAGATGTGGATAGAAAATAGGCTATTGGAAATGGAACATAGAATGTTTAGGAAGCTCGTAGAAAGTATATGTAGAAGCGCTGAAATAATATGGAAACTTGTCAGAAAGCTGTTATGGTGACATTCGGCTGCGGCTGTGATGAACCTCACTGATTACATTATCGAAACCTACTATGATACCATATAGAATTTGTAATTTATGTGTGTCTAAATCATACCACATTCACTTCTATCTCTAACATGTACGATAAATGTTAATTGATATGGTTTGTTAATTCTAATTGTAATTCTTCTATTGTAACAATACTAAGTTACGTATTTTTATCTGATGTTCAACTACAGTGTTTTGCAACAAGCAAATGATGGGAGGACAAAAGCACAAGGTGTTACGGTGCACCAGAATTCACATCAACAAGGAAATAAAAGCGTTGAAAGTGGACGCGCCCAGAATTTTCCGAACACGGTGTTAGCCAAAGGAATGACAACATTGGATGAATTTAAATATGGGTTTCCGTCCGAAAGCTTATCGACTACTTCAAATAAATGGTGGGGATGGAGTGATTCTGACGATCGTACTGACACAAACCAAGACGGAGGCAAGAGTCAACCAGAAGAAAGTGGAGGAGAGGCAGAGAAGAAGGAATGTGAAACCGGAAAAGTTGAAAGTAGTGAAGAAACTCGTCAAGGTTCATCTTTGTTGAGATCTGTGAGGAAAAGAGCTGTAGAAGAAGGAAGAGAAACATTTAAATTAGGTGTTCTCCGAGGCTATGGTGTAAACAAGCTAGGCAAAAGGGAGAAAATATTGCTCCATCAAATATTTGGATCTTCATTGCCAAAATCATGGATGGATGCATGA

Protein sequence

>MS.gene22144.t1

MEAKVNAVTSEVATLKQTLAEMRVQAAQDHERLVSIITRSCAGSRVFFEYGDDLARLIARAVCQDRTIEDDQYLTWEKLKDALCEKYGGLREAKVYEQLSVLQQDGSVDEYIREYESLVSQVHRLQEAQYVQYFIHGHEKGIKDRLRNLIVMGLVTQAKLLNIALAVEMDTQEKKWNWTRTSDGSKHSRVFWKISKVDVVVFRNSITVIYGRLGFGSGWAWNRPMLEMLCHENWPEKLSDAHHARDPKKSNNTVELIGVSQQRIVLQQANDGRTKAQGVTVHQNSHQQGNKSVESGRAQNFPNTVLAKGMTTLDEFKYGFPSESLSTTSNKWWGWSDSDDRTDTNQDGGKSQPEESGGEAEKKECETGKVESSEETRQGSSLLRSVRKRAVEEGRETFKLGVLRGYGVNKLGKREKILLHQIFGSSLPKSWMDA