Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23397.t1 | XP_013445033.1 | 90.4 | 292 | 19 | 3 | 1 | 291 | 87 | 370 | 1.50E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23397.t1 | Q66GR3 | 39.9 | 263 | 110 | 7 | 48 | 291 | 100 | 333 | 8.2e-32 | 139.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23397.t1 | A0A072TQD6 | 90.4 | 292 | 19 | 3 | 1 | 291 | 87 | 370 | 1.1e-138 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23397.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene23397 | -0.810596 | 1.07E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene23397 | -0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene049611 | MS.gene23397 | 0.834544 | 2.82E-56 | -1.69E-46 |
| MS.gene049634 | MS.gene23397 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene23397 | -0.806331 | 8.66E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene23397 | -0.800628 | 1.32E-48 | -1.69E-46 |
| MS.gene050381 | MS.gene23397 | 0.814385 | 1.58E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene23397 | -0.815179 | 1.06E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene23397 | -0.846386 | 2.24E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene23397 | -0.851754 | 7.22E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene23397 | -0.831313 | 1.79E-55 | -1.69E-46 |
| MS.gene05079 | MS.gene23397 | 0.819197 | 1.32E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene23397 | -0.828567 | 8.37E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene23397 | -0.829412 | 5.22E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene23397 | -0.824971 | 6.04E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene23397 | 0.829125 | 6.13E-55 | -1.69E-46 |
| MS.gene05104 | MS.gene23397 | 0.813773 | 2.16E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene23397 | 0.829719 | 4.40E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene23397 | 0.851006 | 1.18E-60 | -1.69E-46 |
| MS.gene051268 | MS.gene23397 | -0.826729 | 2.31E-54 | -1.69E-46 |
| MS.gene051364 | MS.gene23397 | 0.800742 | 1.25E-48 | -1.69E-46 |
| MS.gene051366 | MS.gene23397 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene23397 | 0.816283 | 5.99E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene23397 | -0.80444 | 2.16E-49 | -1.69E-46 |
| MS.gene052802 | MS.gene23397 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene23397 | 0.852958 | 3.28E-61 | -1.69E-46 |
| MS.gene053488 | MS.gene23397 | 0.809151 | 2.18E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene23397 | 0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene054708 | MS.gene23397 | 0.802685 | 4.99E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene23397 | -0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene055124 | MS.gene23397 | 0.813719 | 2.22E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene23397 | 0.820653 | 6.12E-53 | -1.69E-46 |
| MS.gene055202 | MS.gene23397 | 0.816368 | 5.73E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene23397 | -0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene23397 | -0.806608 | 7.57E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene23397 | -0.804863 | 1.76E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene23397 | -0.809885 | 1.52E-50 | -1.69E-46 |
| MS.gene055750 | MS.gene23397 | -0.80025 | 1.57E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene23397 | -0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene23397 | -0.80842 | 3.12E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene23397 | -0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene23397 | 0.83734 | 5.51E-57 | -1.69E-46 |
| MS.gene056224 | MS.gene23397 | 0.810457 | 1.14E-50 | -1.69E-46 |
| MS.gene056359 | MS.gene23397 | 0.800915 | 1.15E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene23397 | -0.839938 | 1.17E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene23397 | -0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene056856 | MS.gene23397 | 0.852709 | 3.86E-61 | -1.69E-46 |
| MS.gene056857 | MS.gene23397 | 0.814332 | 1.63E-51 | -1.69E-46 |
| MS.gene057768 | MS.gene23397 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene23397 | 0.829353 | 5.40E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene23397 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene058117 | MS.gene23397 | 0.828396 | 9.20E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene23397 | 0.847331 | 1.24E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene23397 | 0.835273 | 1.85E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene23397 | 0.849835 | 2.51E-60 | -1.69E-46 |
| MS.gene058268 | MS.gene23397 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene23397 | 0.807595 | 4.68E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene23397 | -0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene058978 | MS.gene23397 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene23397 | -0.838581 | 2.64E-57 | -1.69E-46 |
| MS.gene059045 | MS.gene23397 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene23397 | -0.813321 | 2.72E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene23397 | -0.854891 | 9.10E-62 | -1.69E-46 |
| MS.gene059916 | MS.gene23397 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene23397 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene23397 | -0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene23397 | -0.824611 | 7.35E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene23397 | -0.812247 | 4.67E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene23397 | -0.820556 | 6.45E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene23397 | -0.812603 | 3.90E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23397.t1 | MTR_8g036235 | 90.411 | 292 | 19 | 3 | 1 | 291 | 87 | 370 | 0.0 | 515 |
| MS.gene23397.t1 | MTR_8g036235 | 90.217 | 276 | 18 | 3 | 1 | 275 | 87 | 354 | 1.03e-172 | 483 |
| MS.gene23397.t1 | MTR_3g027650 | 58.194 | 299 | 78 | 11 | 13 | 291 | 105 | 376 | 6.68e-98 | 293 |
| MS.gene23397.t1 | MTR_3g028520 | 58.194 | 299 | 78 | 11 | 13 | 291 | 105 | 376 | 1.52e-97 | 293 |
| MS.gene23397.t1 | MTR_3g027650 | 58.194 | 299 | 78 | 11 | 13 | 291 | 105 | 376 | 1.52e-97 | 293 |
| MS.gene23397.t1 | MTR_3g027650 | 56.184 | 283 | 77 | 11 | 13 | 275 | 105 | 360 | 6.41e-87 | 264 |
| MS.gene23397.t1 | MTR_1g052470 | 43.825 | 251 | 122 | 6 | 51 | 291 | 111 | 352 | 1.79e-47 | 163 |
| MS.gene23397.t1 | MTR_4g065870 | 41.079 | 241 | 113 | 10 | 68 | 291 | 181 | 409 | 4.98e-42 | 149 |
| MS.gene23397.t1 | MTR_4g065870 | 41.079 | 241 | 113 | 10 | 68 | 291 | 181 | 409 | 7.61e-42 | 149 |
| MS.gene23397.t1 | MTR_2g098310 | 41.079 | 241 | 113 | 7 | 66 | 291 | 160 | 386 | 1.09e-41 | 148 |
| MS.gene23397.t1 | MTR_2g098310 | 41.841 | 239 | 114 | 7 | 66 | 291 | 160 | 386 | 1.69e-41 | 148 |
| MS.gene23397.t1 | MTR_2g098310 | 35.870 | 276 | 113 | 8 | 66 | 291 | 160 | 421 | 2.15e-34 | 129 |
| MS.gene23397.t1 | MTR_7g092540 | 38.136 | 236 | 104 | 4 | 68 | 291 | 92 | 297 | 7.84e-34 | 125 |
| MS.gene23397.t1 | MTR_7g092540 | 64.583 | 96 | 34 | 0 | 196 | 291 | 202 | 297 | 1.51e-33 | 125 |
| MS.gene23397.t1 | MTR_4g065870 | 38.222 | 225 | 110 | 10 | 68 | 275 | 181 | 393 | 3.88e-32 | 123 |
| MS.gene23397.t1 | MTR_2g098310 | 39.013 | 223 | 111 | 7 | 66 | 275 | 160 | 370 | 1.58e-31 | 121 |
| MS.gene23397.t1 | MTR_4g033295 | 75.362 | 69 | 15 | 1 | 223 | 291 | 106 | 172 | 4.04e-29 | 109 |
| MS.gene23397.t1 | MTR_4g033295 | 75.362 | 69 | 15 | 1 | 223 | 291 | 106 | 172 | 8.52e-29 | 109 |
| MS.gene23397.t1 | MTR_1g116790 | 53.636 | 110 | 32 | 3 | 184 | 291 | 227 | 319 | 5.74e-28 | 110 |
| MS.gene23397.t1 | MTR_1g052470 | 39.906 | 213 | 109 | 6 | 51 | 253 | 111 | 314 | 1.12e-27 | 109 |
| MS.gene23397.t1 | MTR_2g098310 | 35.961 | 203 | 101 | 7 | 66 | 253 | 160 | 348 | 1.59e-21 | 93.2 |
| MS.gene23397.t1 | MTR_4g033295 | 75.472 | 53 | 11 | 1 | 223 | 275 | 106 | 156 | 2.08e-19 | 84.0 |
| MS.gene23397.t1 | MTR_6g052280 | 53.750 | 80 | 37 | 0 | 196 | 275 | 13 | 92 | 1.40e-18 | 80.5 |
| MS.gene23397.t1 | MTR_4g131160 | 60.714 | 56 | 21 | 1 | 236 | 291 | 198 | 252 | 6.13e-14 | 72.0 |
| MS.gene23397.t1 | MTR_4g131160 | 60.714 | 56 | 21 | 1 | 236 | 291 | 195 | 249 | 6.36e-14 | 71.6 |
| MS.gene23397.t1 | MTR_3g498825 | 54.545 | 55 | 25 | 0 | 237 | 291 | 147 | 201 | 1.76e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23397.t1 | AT2G42280 | 40.598 | 234 | 100 | 5 | 68 | 291 | 129 | 333 | 2.48e-39 | 141 |
| MS.gene23397.t1 | AT2G42280 | 40.598 | 234 | 100 | 5 | 68 | 291 | 129 | 333 | 3.73e-39 | 140 |
| MS.gene23397.t1 | AT2G43140 | 41.176 | 238 | 110 | 7 | 60 | 291 | 72 | 285 | 7.60e-35 | 128 |
| MS.gene23397.t1 | AT2G43140 | 45.509 | 167 | 66 | 4 | 126 | 291 | 46 | 188 | 8.96e-34 | 122 |
| MS.gene23397.t1 | AT1G51140 | 37.445 | 227 | 119 | 8 | 69 | 291 | 151 | 358 | 9.08e-31 | 119 |
| MS.gene23397.t1 | AT1G05805 | 35.955 | 267 | 128 | 8 | 29 | 291 | 110 | 337 | 1.03e-30 | 118 |
| MS.gene23397.t1 | AT1G35460 | 69.565 | 69 | 19 | 1 | 223 | 291 | 169 | 235 | 3.12e-26 | 104 |
| MS.gene23397.t1 | AT4G09180 | 55.914 | 93 | 41 | 0 | 199 | 291 | 146 | 238 | 4.79e-25 | 101 |
| MS.gene23397.t1 | AT2G42280 | 35.204 | 196 | 88 | 5 | 68 | 253 | 129 | 295 | 2.14e-19 | 86.7 |
| MS.gene23397.t1 | AT1G35460 | 64.286 | 56 | 18 | 1 | 223 | 278 | 169 | 222 | 3.48e-16 | 76.3 |
| MS.gene23397.t1 | AT2G24260 | 60.714 | 56 | 21 | 1 | 236 | 291 | 34 | 88 | 3.23e-14 | 71.2 |
| MS.gene23397.t1 | AT2G24260 | 59.649 | 57 | 22 | 1 | 235 | 291 | 136 | 191 | 7.96e-14 | 71.2 |
| MS.gene23397.t1 | AT4G30980 | 58.929 | 56 | 22 | 1 | 236 | 291 | 129 | 183 | 1.77e-13 | 70.1 |
| MS.gene23397.t1 | AT4G30980 | 58.929 | 56 | 22 | 1 | 236 | 291 | 177 | 231 | 3.05e-13 | 69.7 |
| MS.gene23397.t1 | AT5G58010 | 57.143 | 56 | 23 | 1 | 236 | 291 | 98 | 152 | 3.57e-13 | 68.9 |
Find 0 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTATATTTTACTTTGT+AGG | + | 57257:12558-12577 | MS.gene23397:intron | 15.0% |
| !!! | AAAGTATATTTTACTTTGTA+GGG | + | 57257:12559-12578 | MS.gene23397:intron | 15.0% |
| !!! | AAATATATGCATATTTTTCT+AGG | + | 57257:12099-12118 | MS.gene23397:intron | 15.0% |
| !!! | AGTAAAATATACTTTTTCAA+TGG | - | 57257:12554-12573 | MS.gene23397:intergenic | 15.0% |
| !!! | ATACTAAAATTTAGTTTAGA+AGG | + | 57257:12062-12081 | MS.gene23397:intron | 15.0% |
| !! | ATTGCAAAAAATTGTGAAAT+CGG | - | 57257:13138-13157 | MS.gene23397:intergenic | 20.0% |
| !! | CTAAGTATAATCTTTACAAA+AGG | - | 57257:12977-12996 | MS.gene23397:intergenic | 20.0% |
| !! | GAATAGACAATTAATTATCT+TGG | + | 57257:11953-11972 | MS.gene23397:intron | 20.0% |
| !! | GATAATATAGTAAAGCAATT+GGG | + | 57257:11826-11845 | MS.gene23397:intron | 20.0% |
| !! | TAATTAATTGTCTATTCATC+AGG | - | 57257:11950-11969 | MS.gene23397:intergenic | 20.0% |
| !! | TAATTATCTTGGACATTATT+AGG | + | 57257:11964-11983 | MS.gene23397:intron | 20.0% |
| !! | TCAACAATGATAAAAGTTTA+AGG | - | 57257:13427-13446 | MS.gene23397:intergenic | 20.0% |
| !! | TCTAAAAAAACTTGTACTAA+TGG | + | 57257:12583-12602 | MS.gene23397:intron | 20.0% |
| !! | TGAAATTTGTGATTATAGAA+AGG | - | 57257:13656-13675 | MS.gene23397:intergenic | 20.0% |
| !! | TGATAATATAGTAAAGCAAT+TGG | + | 57257:11825-11844 | MS.gene23397:intron | 20.0% |
| !! | TGTATTAAAAGTAGAAACAT+GGG | + | 57257:12764-12783 | MS.gene23397:CDS | 20.0% |
| !! | TTGTATTAAAAGTAGAAACA+TGG | + | 57257:12763-12782 | MS.gene23397:CDS | 20.0% |
| !! | TTTCCATAAAAAATAAGAAC+AGG | - | 57257:11703-11722 | MS.gene23397:intergenic | 20.0% |
| !!! | AACTTTTTGAGTAAAAATTC+TGG | - | 57257:13173-13192 | MS.gene23397:intergenic | 20.0% |
| !!! | AGATTCAAAATTTTGGTTTT+TGG | - | 57257:13351-13370 | MS.gene23397:intergenic | 20.0% |
| !!! | ATACCTGTTCTTATTTTTTA+TGG | + | 57257:11697-11716 | MS.gene23397:intron | 20.0% |
| !!! | ATTTCTTTTTTGATAATGCT+TGG | + | 57257:11423-11442 | MS.gene23397:intron | 20.0% |
| !!! | ATTTTTTAGTAGAGAATAGT+AGG | + | 57257:13380-13399 | MS.gene23397:intron | 20.0% |
| !!! | CAAAATGAGATTCAAAATTT+TGG | - | 57257:13358-13377 | MS.gene23397:intergenic | 20.0% |
| !!! | TATGCTTTTTTTATCTTACT+TGG | + | 57257:11342-11361 | MS.gene23397:intron | 20.0% |
| !!! | TCTAAGAAAAGTAATTTTGT+AGG | + | 57257:11666-11685 | MS.gene23397:intron | 20.0% |
| !!! | TTACTTGGTAATATCTATTA+TGG | + | 57257:11357-11376 | MS.gene23397:intron | 20.0% |
| ! | AAACAAGACATGTATTGTTA+AGG | - | 57257:12273-12292 | MS.gene23397:intergenic | 25.0% |
| ! | AACAAGACATGTATTGTTAA+GGG | - | 57257:12272-12291 | MS.gene23397:intergenic | 25.0% |
| ! | ACATAACACATCATATTGTT+GGG | + | 57257:13950-13969 | MS.gene23397:intron | 25.0% |
| ! | ATATTACCTTATCTGCATTT+GGG | - | 57257:13792-13811 | MS.gene23397:intergenic | 25.0% |
| ! | ATCAAGCTCAAATCTATTAT+CGG | + | 57257:11447-11466 | MS.gene23397:intron | 25.0% |
| ! | ATTGTATTCCATGTGAAAAA+GGG | - | 57257:11135-11154 | MS.gene23397:intergenic | 25.0% |
| ! | CAATAATACTGCACAAAATA+GGG | - | 57257:11807-11826 | MS.gene23397:intergenic | 25.0% |
| ! | CAATACAATGATTACTCTTA+TGG | + | 57257:11151-11170 | MS.gene23397:CDS | 25.0% |
| ! | CCAAAAAATGCTACTAATAA+GGG | + | 57257:12869-12888 | MS.gene23397:CDS | 25.0% |
| ! | CTCTCTTTAGATTCAAAATT+CGG | - | 57257:13207-13226 | MS.gene23397:intergenic | 25.0% |
| ! | GGATCAACTAAAAATTTAAG+AGG | + | 57257:11593-11612 | MS.gene23397:intron | 25.0% |
| ! | GTAAAAGTAGTTTATGCATA+AGG | - | 57257:12317-12336 | MS.gene23397:intergenic | 25.0% |
| ! | TAAAACACAACAAAAAAGCA+GGG | - | 57257:13861-13880 | MS.gene23397:intergenic | 25.0% |
| ! | TATATTACCTTATCTGCATT+TGG | - | 57257:13793-13812 | MS.gene23397:intergenic | 25.0% |
| ! | TATATTTACTTAACACACGA+TGG | + | 57257:12148-12167 | MS.gene23397:intron | 25.0% |
| ! | TATTGTATTCCATGTGAAAA+AGG | - | 57257:11136-11155 | MS.gene23397:intergenic | 25.0% |
| ! | TCAATAATACTGCACAAAAT+AGG | - | 57257:11808-11827 | MS.gene23397:intergenic | 25.0% |
| ! | TCCAAAAAATGCTACTAATA+AGG | + | 57257:12868-12887 | MS.gene23397:CDS | 25.0% |
| ! | TCTCTTTAGATTCAAAATTC+GGG | - | 57257:13206-13225 | MS.gene23397:intergenic | 25.0% |
| ! | TTAAAACACAACAAAAAAGC+AGG | - | 57257:13862-13881 | MS.gene23397:intergenic | 25.0% |
| ! | TTGCAAAAAATTGTGAAATC+GGG | - | 57257:13137-13156 | MS.gene23397:intergenic | 25.0% |
| !! | AAATCAGGTCTTTTCTTTTA+CGG | - | 57257:11558-11577 | MS.gene23397:intergenic | 25.0% |
| !! | TGAGTTTTTCTCCAATTATT+CGG | + | 57257:11309-11328 | MS.gene23397:CDS | 25.0% |
| !! | TGTAACTTTTACTAAAACCA+CGG | + | 57257:13884-13903 | MS.gene23397:intron | 25.0% |
| !! | TTAACAATACATGTCTTGTT+TGG | + | 57257:12272-12291 | MS.gene23397:intron | 25.0% |
| !!! | CTTGTTTTAGGTAAAATAGT+GGG | - | 57257:13075-13094 | MS.gene23397:intergenic | 25.0% |
| !!! | GAATTTCCATTTTAACCAAT+TGG | + | 57257:12951-12970 | MS.gene23397:intron | 25.0% |
| !!! | GTTGATTTTATAAACTATCC+TGG | + | 57257:12382-12401 | MS.gene23397:intron | 25.0% |
| !!! | TCTTGTTTTAGGTAAAATAG+TGG | - | 57257:13076-13095 | MS.gene23397:intergenic | 25.0% |
| !!! | TTGAGTAAAAATTCTGGTTT+TGG | - | 57257:13167-13186 | MS.gene23397:intergenic | 25.0% |
| AAAAAACTTGTACTAATGGC+AGG | + | 57257:12587-12606 | MS.gene23397:intron | 30.0% | |
| AAAAGGCCAATTGGTTAAAA+TGG | - | 57257:12960-12979 | MS.gene23397:intergenic | 30.0% | |
| AATCTTTACAAAAGGCCAAT+TGG | - | 57257:12969-12988 | MS.gene23397:intergenic | 30.0% | |
| ACAAAACATTATCACTTTCG+AGG | + | 57257:13230-13249 | MS.gene23397:intron | 30.0% | |
| AGAAACATGGGAAATGATAA+TGG | + | 57257:12776-12795 | MS.gene23397:CDS | 30.0% | |
| AGATTCAGAATTGGTAAACA+TGG | - | 57257:11086-11105 | MS.gene23397:intergenic | 30.0% | |
| AGCACTAACAATTACACAAA+AGG | - | 57257:11388-11407 | MS.gene23397:intergenic | 30.0% | |
| ATAATTGCTCCAATCTCATT+AGG | + | 57257:11269-11288 | MS.gene23397:CDS | 30.0% | |
| ATCCTTGATTATGTTGAGTT+TGG | - | 57257:11198-11217 | MS.gene23397:intergenic | 30.0% | |
| ATTACGACAATGTGTGAAAT+TGG | + | 57257:13321-13340 | MS.gene23397:intron | 30.0% | |
| CACATAACACATCATATTGT+TGG | + | 57257:13949-13968 | MS.gene23397:intron | 30.0% | |
| CATAATCAAGGATTTCCAAA+TGG | + | 57257:11205-11224 | MS.gene23397:CDS | 30.0% | |
| CCATATTGTTTACCCAAAAT+TGG | - | 57257:13289-13308 | MS.gene23397:intergenic | 30.0% | |
| TACCAAACTCAACATAATCA+AGG | + | 57257:11193-11212 | MS.gene23397:CDS | 30.0% | |
| TCAAGCTCAAATCTATTATC+GGG | + | 57257:11448-11467 | MS.gene23397:intron | 30.0% | |
| TGCAAAAAATTGTGAAATCG+GGG | - | 57257:13136-13155 | MS.gene23397:intergenic | 30.0% | |
| TTAATTGTCTATTCATCAGG+AGG | - | 57257:11947-11966 | MS.gene23397:intergenic | 30.0% | |
| TTACGACAATGTGTGAAATT+GGG | + | 57257:13322-13341 | MS.gene23397:intron | 30.0% | |
| TTGGGTAAACAATATGGATT+GGG | + | 57257:13292-13311 | MS.gene23397:intron | 30.0% | |
| TTTGGGTAAACAATATGGAT+TGG | + | 57257:13291-13310 | MS.gene23397:intron | 30.0% | |
| ! | AGACAAAAGTTGCCAATTTT+GGG | + | 57257:13274-13293 | MS.gene23397:intron | 30.0% |
| ! | AGGTCTTATCTCATCAAATA+TGG | - | 57257:11533-11552 | MS.gene23397:intergenic | 30.0% |
| ! | CAAAATCCGGATTTTTGAAT+GGG | - | 57257:13109-13128 | MS.gene23397:intergenic | 30.0% |
| ! | GAAAAGTAATTTTGTAGGAG+TGG | + | 57257:11671-11690 | MS.gene23397:intron | 30.0% |
| ! | GATTTTGGATACCAAAAACT+TGG | + | 57257:13476-13495 | MS.gene23397:CDS | 30.0% |
| ! | GGTTCATTTTCAACAATTTG+TGG | - | 57257:12725-12744 | MS.gene23397:intergenic | 30.0% |
| ! | TCAAAATCCGGATTTTTGAA+TGG | - | 57257:13110-13129 | MS.gene23397:intergenic | 30.0% |
| ! | TTCACACATTGTCGTAATTT+TGG | - | 57257:13319-13338 | MS.gene23397:intergenic | 30.0% |
| !! | CCAATTTTGGGTAAACAATA+TGG | + | 57257:13286-13305 | MS.gene23397:intron | 30.0% |
| !!! | CCCTTATTAGTAGCATTTTT+TGG | - | 57257:12872-12891 | MS.gene23397:intergenic | 30.0% |
| !!! | CTTATTTTTATAAGCTCTCC+AGG | - | 57257:12403-12422 | MS.gene23397:intergenic | 30.0% |
| !!! | GAGGACTAAAATCTTGTTTT+AGG | - | 57257:13087-13106 | MS.gene23397:intergenic | 30.0% |
| !!! | TTTTTTGATTTGCACATTGC+AGG | + | 57257:13717-13736 | MS.gene23397:intron | 30.0% |
| AATAGTCAACTCTCTTAGCA+AGG | - | 57257:11893-11912 | MS.gene23397:intergenic | 35.0% | |
| ACCACTATCAACCGAATAAT+TGG | - | 57257:11323-11342 | MS.gene23397:intergenic | 35.0% | |
| AGGTACAATGCTACAAACAT+TGG | - | 57257:13407-13426 | MS.gene23397:intergenic | 35.0% | |
| CAAAAAATTGTGAAATCGGG+GGG | - | 57257:13134-13153 | MS.gene23397:intergenic | 35.0% | |
| CACTGACAAAGATTCAGAAT+TGG | - | 57257:11095-11114 | MS.gene23397:intergenic | 35.0% | |
| GAAGAGAAGAGGGTAAAAAT+GGG | + | 57257:11990-12009 | MS.gene23397:intron | 35.0% | |
| GAGGGTAAAAATGGGATATT+AGG | + | 57257:11998-12017 | MS.gene23397:intron | 35.0% | |
| GCAAAAAATTGTGAAATCGG+GGG | - | 57257:13135-13154 | MS.gene23397:intergenic | 35.0% | |
| GGATTTCCAAATGGTTCTTT+AGG | + | 57257:11214-11233 | MS.gene23397:CDS | 35.0% | |
| GGTATCCAAAATCTACATTC+TGG | - | 57257:13469-13488 | MS.gene23397:intergenic | 35.0% | |
| GTCAGTGAAACAAGAAGAAA+AGG | + | 57257:11108-11127 | MS.gene23397:CDS | 35.0% | |
| TAATTGGAGAAAAACTCAGC+AGG | - | 57257:11307-11326 | MS.gene23397:intergenic | 35.0% | |
| TACGACAATGTGTGAAATTG+GGG | + | 57257:13323-13342 | MS.gene23397:intron | 35.0% | |
| TATCTTGGACATTATTAGGC+TGG | + | 57257:11968-11987 | MS.gene23397:intron | 35.0% | |
| TCAACACCTAAAGAACCATT+TGG | - | 57257:11223-11242 | MS.gene23397:intergenic | 35.0% | |
| TGATGTGTTATGTGCTAGTT+TGG | - | 57257:13943-13962 | MS.gene23397:intergenic | 35.0% | |
| TGTAAAATTCGTGCCAAAAG+AGG | + | 57257:13584-13603 | MS.gene23397:CDS | 35.0% | |
| TTTAATCGTCTCTTTGTGAG+AGG | - | 57257:13027-13046 | MS.gene23397:intergenic | 35.0% | |
| ! | AACTTTTACTAAAACCACGG+TGG | + | 57257:13887-13906 | MS.gene23397:intron | 35.0% |
| ! | ACTACATCATCTAGTGGATA+TGG | + | 57257:12653-12672 | MS.gene23397:CDS | 35.0% |
| ! | ACTCTTTTGCCTAATGAGAT+TGG | - | 57257:11281-11300 | MS.gene23397:intergenic | 35.0% |
| ! | ACTTTCCAAAGCATTTGAAG+TGG | - | 57257:12909-12928 | MS.gene23397:intergenic | 35.0% |
| ! | AGGTCTTTTCTTTTACGGTT+AGG | - | 57257:11553-11572 | MS.gene23397:intergenic | 35.0% |
| ! | CTTTTGGCACGAATTTTACA+TGG | - | 57257:13584-13603 | MS.gene23397:intergenic | 35.0% |
| ! | GAAAAGACCTGATTTTGTAG+CGG | + | 57257:11563-11582 | MS.gene23397:intron | 35.0% |
| ! | GAGAAGTTTTTACACGTTCA+AGG | + | 57257:13551-13570 | MS.gene23397:CDS | 35.0% |
| ! | GAGACAAAAGTTGCCAATTT+TGG | + | 57257:13273-13292 | MS.gene23397:intron | 35.0% |
| ! | GCAACTTTTGTCTCAGAAAA+CGG | - | 57257:13267-13286 | MS.gene23397:intergenic | 35.0% |
| ! | GTTTTCCACTTCAAATGCTT+TGG | + | 57257:12901-12920 | MS.gene23397:CDS | 35.0% |
| ! | GTTTTCTTCAAGAGAAGCTT+GGG | + | 57257:12206-12225 | MS.gene23397:intron | 35.0% |
| ! | TGGTTGGTCAATATTGATCA+TGG | - | 57257:11735-11754 | MS.gene23397:intergenic | 35.0% |
| ! | TGTTATGTGCTAGTTTGGAT+TGG | - | 57257:13938-13957 | MS.gene23397:intergenic | 35.0% |
| ! | TGTTGCCAGAATGTAGATTT+TGG | + | 57257:13461-13480 | MS.gene23397:intron | 35.0% |
| ! | TGTTTTCTTCAAGAGAAGCT+TGG | + | 57257:12205-12224 | MS.gene23397:intron | 35.0% |
| ! | TTGCTTGCTAGTTGTTAACT+AGG | + | 57257:11759-11778 | MS.gene23397:intron | 35.0% |
| !! | AATGGTTCTTTAGGTGTTGA+AGG | + | 57257:11223-11242 | MS.gene23397:CDS | 35.0% |
| !! | ACACTCCAAGATGTTAGTTT+TGG | + | 57257:11482-11501 | MS.gene23397:intron | 35.0% |
| !! | GTTGAAGGCAATGTTTTTGA+TGG | + | 57257:11238-11257 | MS.gene23397:CDS | 35.0% |
| !! | TCCAATTATTCGGTTGATAG+TGG | + | 57257:11319-11338 | MS.gene23397:CDS | 35.0% |
| !! | TTCAAATGCTTTGGAAAGTC+AGG | + | 57257:12910-12929 | MS.gene23397:CDS | 35.0% |
| !!! | CACTCCAAGATGTTAGTTTT+GGG | + | 57257:11483-11502 | MS.gene23397:intron | 35.0% |
| AAATCTATTATCGGGCCACT+CGG | + | 57257:11456-11475 | MS.gene23397:intron | 40.0% | |
| AACAACTAGCAAGCAAGCTT+TGG | - | 57257:11755-11774 | MS.gene23397:intergenic | 40.0% | |
| AACTAGCACTGCTGATATGT+TGG | + | 57257:14029-14048 | MS.gene23397:CDS | 40.0% | |
| ACACTTCCTACCTCTCTTAA+TGG | - | 57257:12620-12639 | MS.gene23397:intergenic | 40.0% | |
| ACGACAATGTGTGAAATTGG+GGG | + | 57257:13324-13343 | MS.gene23397:intron | 40.0% | |
| AGAACTATCCCAGTAGTCAT+TGG | - | 57257:12831-12850 | MS.gene23397:intergenic | 40.0% | |
| AGTCCTCCCATTCAAAAATC+CGG | + | 57257:13100-13119 | MS.gene23397:intron | 40.0% | |
| ATCTTGATAGAGCAAGAGGA+TGG | - | 57257:12701-12720 | MS.gene23397:intergenic | 40.0% | |
| CAAGCTACTACATCATCTAG+TGG | + | 57257:12647-12666 | MS.gene23397:CDS | 40.0% | |
| CCTTATCTGCATTTGGGAAA+AGG | - | 57257:13786-13805 | MS.gene23397:intergenic | 40.0% | |
| GAACAAGAAGAACCATGCTT+AGG | - | 57257:13005-13024 | MS.gene23397:intergenic | 40.0% | |
| GGAAGAGAAGAGGGTAAAAA+TGG | + | 57257:11989-12008 | MS.gene23397:intron | 40.0% | |
| GGAGAGAATCTGTGAAAAGA+AGG | + | 57257:12019-12038 | MS.gene23397:intron | 40.0% | |
| TAATCCACCGCTACAAAATC+AGG | - | 57257:11573-11592 | MS.gene23397:intergenic | 40.0% | |
| TACGCCCAAAACTAACATCT+TGG | - | 57257:11490-11509 | MS.gene23397:intergenic | 40.0% | |
| TACTTAGATACGCCTAAGCA+TGG | + | 57257:12990-13009 | MS.gene23397:intron | 40.0% | |
| TAGCTTCACCAATGACTACT+GGG | + | 57257:12820-12839 | MS.gene23397:CDS | 40.0% | |
| TATTAGGCTGGAAGAGAAGA+GGG | + | 57257:11980-11999 | MS.gene23397:intron | 40.0% | |
| TCTTGAGTCCTAACTCCTAA+GGG | + | 57257:12171-12190 | MS.gene23397:intron | 40.0% | |
| TGATGATACTACTTCCCTCT+TGG | + | 57257:14001-14020 | MS.gene23397:intron | 40.0% | |
| TTATTAGGCTGGAAGAGAAG+AGG | + | 57257:11979-11998 | MS.gene23397:intron | 40.0% | |
| TTCTTCCAAGATGGCTACTA+TGG | + | 57257:13529-13548 | MS.gene23397:CDS | 40.0% | |
| TTTGCACCATTAAGAGAGGT+AGG | + | 57257:12611-12630 | MS.gene23397:CDS | 40.0% | |
| ! | AACAGAGATCTTTTGCCCTT+AGG | - | 57257:12189-12208 | MS.gene23397:intergenic | 40.0% |
| ! | AATCCGGATTTTTGAATGGG+AGG | - | 57257:13106-13125 | MS.gene23397:intergenic | 40.0% |
| ! | AGAGAGGTAGGAAGTGTAAA+TGG | + | 57257:12623-12642 | MS.gene23397:CDS | 40.0% |
| ! | AGGTTTTGCACCATTAAGAG+AGG | + | 57257:12607-12626 | MS.gene23397:intron | 40.0% |
| ! | ATCTTTTGCCCTTAGGAGTT+AGG | - | 57257:12182-12201 | MS.gene23397:intergenic | 40.0% |
| ! | CAATTTGCTTGAAGAGCTTC+AGG | - | 57257:12746-12765 | MS.gene23397:intergenic | 40.0% |
| ! | CCTTTTCCCAAATGCAGATA+AGG | + | 57257:13783-13802 | MS.gene23397:CDS | 40.0% |
| ! | GATGGGACAAACCAAGTTTT+TGG | - | 57257:13490-13509 | MS.gene23397:intergenic | 40.0% |
| ! | TATGTGCTAGTTTGGATTGG+CGG | - | 57257:13935-13954 | MS.gene23397:intergenic | 40.0% |
| !! | GAAAAGGACCCTTTTTCACA+TGG | + | 57257:11124-11143 | MS.gene23397:CDS | 40.0% |
| !! | TGATTTTGTAGCGGTGGATT+AGG | + | 57257:11572-11591 | MS.gene23397:intron | 40.0% |
| !!! | GATGTTAGTTTTGGGCGTAA+TGG | + | 57257:11491-11510 | MS.gene23397:intron | 40.0% |
| AAATCGGGGGGATCAAAATC+CGG | - | 57257:13122-13141 | MS.gene23397:intergenic | 45.0% | |
| AGCATTGCAGAGAGGGTAAA+AGG | + | 57257:13626-13645 | MS.gene23397:intron | 45.0% | |
| AGCTAGGCAGACTCAAATGA+TGG | - | 57257:13508-13527 | MS.gene23397:intergenic | 45.0% | |
| CAGTAGTCATTGGTGAAGCT+AGG | - | 57257:12821-12840 | MS.gene23397:intergenic | 45.0% | |
| CTAGCTTCACCAATGACTAC+TGG | + | 57257:12819-12838 | MS.gene23397:CDS | 45.0% | |
| CTTCTCCATAGTAGCCATCT+TGG | - | 57257:13537-13556 | MS.gene23397:intergenic | 45.0% | |
| GCAATTGGGAGTGACTTGAA+TGG | + | 57257:11840-11859 | MS.gene23397:intron | 45.0% | |
| GCTAGGCAGACTCAAATGAT+GGG | - | 57257:13507-13526 | MS.gene23397:intergenic | 45.0% | |
| GTCTTGAGTCCTAACTCCTA+AGG | + | 57257:12170-12189 | MS.gene23397:intron | 45.0% | |
| TCTTCAAGAGAAGCTTGGGA+GGG | + | 57257:12210-12229 | MS.gene23397:intron | 45.0% | |
| TGGCATCTTGATAGAGCAAG+AGG | - | 57257:12705-12724 | MS.gene23397:intergenic | 45.0% | |
| TTCTTCAAGAGAAGCTTGGG+AGG | + | 57257:12209-12228 | MS.gene23397:intron | 45.0% | |
| ! | AAGACCTGATTTTGTAGCGG+TGG | + | 57257:11566-11585 | MS.gene23397:intron | 45.0% |
| ! | ACTAGCAAGCAAGCTTTGGT+TGG | - | 57257:11751-11770 | MS.gene23397:intergenic | 45.0% |
| ACCCTCTCTGCAATGCTTCT+AGG | - | 57257:13623-13642 | MS.gene23397:intergenic | 50.0% | |
| AGCTTGGGAGGGTCTTTGAT+TGG | + | 57257:12221-12240 | MS.gene23397:intron | 50.0% | |
| ATCTTGGAGTGTGATCCGAG+TGG | - | 57257:11474-11493 | MS.gene23397:intergenic | 50.0% | |
| CCCTCTCTGCAATGCTTCTA+GGG | - | 57257:13622-13641 | MS.gene23397:intergenic | 50.0% | |
| GCCATCTTGGAAGAAGAGCT+AGG | - | 57257:13524-13543 | MS.gene23397:intergenic | 50.0% | |
| ! | GCCTAGCTCTTCTTCCAAGA+TGG | + | 57257:13520-13539 | MS.gene23397:CDS | 50.0% |
| ! | GTGAGTGGCAAAGCCTCTTT+TGG | - | 57257:13600-13619 | MS.gene23397:intergenic | 50.0% |
| !! | ACCCTAGAAGCATTGCAGAG+AGG | + | 57257:13618-13637 | MS.gene23397:CDS | 50.0% |
| !! | AGTGCTAGTTTGCTGCCAAG+AGG | - | 57257:14019-14038 | MS.gene23397:intergenic | 50.0% |
| !! | CCCTAGAAGCATTGCAGAGA+GGG | + | 57257:13619-13638 | MS.gene23397:CDS | 50.0% |
| !! | GTGCTAGTTTGCTGCCAAGA+GGG | - | 57257:14018-14037 | MS.gene23397:intergenic | 50.0% |
| !! | TGCAATGCTTCTAGGGTGAG+TGG | - | 57257:13615-13634 | MS.gene23397:intergenic | 50.0% |
| AACATTACAGCGTGCCACCG+TGG | - | 57257:13904-13923 | MS.gene23397:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57257 | gene | 11076 | 14076 | 11076 | ID=MS.gene23397 |
| 57257 | mRNA | 11076 | 14076 | 11076 | ID=MS.gene23397.t1;Parent=MS.gene23397 |
| 57257 | exon | 11076 | 11340 | 11076 | ID=MS.gene23397.t1.exon1;Parent=MS.gene23397.t1 |
| 57257 | CDS | 11076 | 11340 | 11076 | ID=cds.MS.gene23397.t1;Parent=MS.gene23397.t1 |
| 57257 | exon | 12609 | 12931 | 12609 | ID=MS.gene23397.t1.exon2;Parent=MS.gene23397.t1 |
| 57257 | CDS | 12609 | 12931 | 12609 | ID=cds.MS.gene23397.t1;Parent=MS.gene23397.t1 |
| 57257 | exon | 13470 | 13640 | 13470 | ID=MS.gene23397.t1.exon3;Parent=MS.gene23397.t1 |
| 57257 | CDS | 13470 | 13640 | 13470 | ID=cds.MS.gene23397.t1;Parent=MS.gene23397.t1 |
| 57257 | exon | 13739 | 13804 | 13739 | ID=MS.gene23397.t1.exon4;Parent=MS.gene23397.t1 |
| 57257 | CDS | 13739 | 13804 | 13739 | ID=cds.MS.gene23397.t1;Parent=MS.gene23397.t1 |
| 57257 | exon | 14027 | 14076 | 14027 | ID=MS.gene23397.t1.exon5;Parent=MS.gene23397.t1 |
| 57257 | CDS | 14027 | 14076 | 14027 | ID=cds.MS.gene23397.t1;Parent=MS.gene23397.t1 |
| Gene Sequence |
| Protein sequence |
