Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29334.t1 | XP_003626291.2 | 85.9 | 263 | 4 | 1 | 10 | 239 | 586 | 848 | 9.10E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29334.t1 | P73097 | 33.3 | 78 | 50 | 1 | 40 | 117 | 8 | 83 | 3.8e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29334.t1 | G7KYP1 | 98.1 | 213 | 4 | 0 | 27 | 239 | 38 | 250 | 2.2e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene29334 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene049171 | MS.gene29334 | 0.837949 | 3.84E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene29334 | 0.812137 | 4.93E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene29334 | 0.813852 | 2.07E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene29334 | 0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene29334 | 0.809016 | 2.33E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene29334 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene29334 | 0.807222 | 5.62E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene29334 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene29334 | 0.836311 | 1.01E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene29334 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene29334 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene29334 | 0.836511 | 8.96E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene29334 | 0.838858 | 2.24E-57 | -1.69E-46 |
| MS.gene050950 | MS.gene29334 | 0.814361 | 1.60E-51 | -1.69E-46 |
| MS.gene051509 | MS.gene29334 | 0.817027 | 4.08E-52 | -1.69E-46 |
| MS.gene051551 | MS.gene29334 | 0.804076 | 2.57E-49 | -1.69E-46 |
| MS.gene051588 | MS.gene29334 | 0.817631 | 2.98E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene29334 | 0.813806 | 2.12E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene29334 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene052164 | MS.gene29334 | 0.856437 | 3.22E-62 | -1.69E-46 |
| MS.gene052414 | MS.gene29334 | 0.836343 | 9.90E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene29334 | 0.828075 | 1.10E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene29334 | 0.854987 | 8.54E-62 | -1.69E-46 |
| MS.gene052505 | MS.gene29334 | 0.815532 | 8.81E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene29334 | 0.805212 | 1.49E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene29334 | 0.854874 | 9.21E-62 | -1.69E-46 |
| MS.gene052825 | MS.gene29334 | 0.852745 | 3.77E-61 | -1.69E-46 |
| MS.gene052966 | MS.gene29334 | 0.828156 | 1.05E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene29334 | 0.83238 | 9.77E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene29334 | 0.841929 | 3.53E-58 | -1.69E-46 |
| MS.gene053436 | MS.gene29334 | 0.836196 | 1.08E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene29334 | 0.82131 | 4.32E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene29334 | 0.853903 | 1.76E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene29334 | 0.802091 | 6.61E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene29334 | 0.805929 | 1.05E-49 | -1.69E-46 |
| MS.gene053997 | MS.gene29334 | 0.821774 | 3.38E-53 | -1.69E-46 |
| MS.gene054003 | MS.gene29334 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene29334 | 0.852259 | 5.19E-61 | -1.69E-46 |
| MS.gene05470 | MS.gene29334 | 0.823747 | 1.17E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene29334 | -0.800767 | 1.23E-48 | -1.69E-46 |
| MS.gene054927 | MS.gene29334 | 0.834417 | 3.03E-56 | -1.69E-46 |
| MS.gene055629 | MS.gene29334 | 0.83559 | 1.54E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene29334 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene29334 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene29334 | 0.828052 | 1.11E-54 | -1.69E-46 |
| MS.gene05601 | MS.gene29334 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene056040 | MS.gene29334 | 0.872147 | 3.97E-67 | -1.69E-46 |
| MS.gene056166 | MS.gene29334 | 0.89433 | 2.73E-75 | -1.69E-46 |
| MS.gene056504 | MS.gene29334 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene29334 | 0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene05664 | MS.gene29334 | 0.802863 | 4.58E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene29334 | 0.816137 | 6.46E-52 | -1.69E-46 |
| MS.gene057086 | MS.gene29334 | 0.854261 | 1.39E-61 | -1.69E-46 |
| MS.gene057289 | MS.gene29334 | 0.803905 | 2.79E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene29334 | 0.805073 | 1.59E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene29334 | 0.815502 | 8.95E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene29334 | 0.850785 | 1.36E-60 | -1.69E-46 |
| MS.gene057856 | MS.gene29334 | 0.824449 | 8.02E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene29334 | 0.81214 | 4.92E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene29334 | 0.811775 | 5.92E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene29334 | 0.82194 | 3.09E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene29334 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene29334 | 0.827776 | 1.30E-54 | -1.69E-46 |
| MS.gene059368 | MS.gene29334 | 0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene29334 | 0.836423 | 9.44E-57 | -1.69E-46 |
| MS.gene059667 | MS.gene29334 | 0.852734 | 3.80E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene29334 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene29334 | 0.818643 | 1.76E-52 | -1.69E-46 |
| MS.gene060295 | MS.gene29334 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene29334 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene29334 | 0.810049 | 1.40E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene29334 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene29334 | 0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene29334 | 0.803955 | 2.72E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene29334 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene29334 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene29334 | 0.853123 | 2.94E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29334.t1 | MTR_7g113530 | 98.122 | 213 | 4 | 0 | 27 | 239 | 38 | 250 | 4.59e-158 | 441 |
| MS.gene29334.t1 | MTR_2g083920 | 32.716 | 162 | 97 | 5 | 40 | 195 | 72 | 227 | 1.35e-15 | 75.9 |
| MS.gene29334.t1 | MTR_2g083920 | 32.099 | 162 | 98 | 5 | 40 | 195 | 72 | 227 | 1.89e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29334.t1 | AT3G05345 | 69.159 | 214 | 61 | 4 | 27 | 239 | 34 | 243 | 1.16e-105 | 308 |
| MS.gene29334.t1 | AT2G42750 | 31.000 | 200 | 117 | 8 | 7 | 195 | 44 | 233 | 3.59e-15 | 75.5 |
Find 76 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATCACAGAGAATTATTT+TGG | 0.134244 | 7.2:+3735065 | MS.gene29334:CDS |
| AACATGCTGGGTTGAAAATT+TGG | 0.174458 | 7.2:-3735505 | None:intergenic |
| TCGAAAAGCGGCTTTAATTT+CGG | 0.279196 | 7.2:-3733943 | None:intergenic |
| TTCACATTTGTCTCTTCAAC+TGG | 0.307988 | 7.2:+3734776 | MS.gene29334:CDS |
| TTTGGTGTTTGGTTTCTCTA+TGG | 0.328111 | 7.2:+3736108 | MS.gene29334:CDS |
| CAACCTGAACGATCCCATTA+TGG | 0.329530 | 7.2:-3733748 | None:intergenic |
| CACAGTTGGTCTTACCATAA+TGG | 0.340880 | 7.2:+3733734 | MS.gene29334:CDS |
| ACTTTGACATAATCTTCCTT+AGG | 0.356859 | 7.2:-3736013 | None:intergenic |
| GTTATTCTCAAACTTAGCTT+TGG | 0.385126 | 7.2:-3735457 | None:intergenic |
| CTACGGATGAATTTGGTGTT+TGG | 0.396165 | 7.2:+3736097 | MS.gene29334:CDS |
| TGTGGTTGACTTTGGGATCA+AGG | 0.398210 | 7.2:+3736051 | MS.gene29334:CDS |
| GTGTGTGCTACGGATGAATT+TGG | 0.398410 | 7.2:+3736090 | MS.gene29334:CDS |
| TGCCTCAGCTGATGTATCAT+AGG | 0.402393 | 7.2:-3735412 | None:intergenic |
| GCTTCACTTAACCCCTCCTA+TGG | 0.418754 | 7.2:+3733689 | MS.gene29334:CDS |
| AGGGTTCTGTGGTTGACTTT+GGG | 0.421550 | 7.2:+3736044 | MS.gene29334:CDS |
| CATCTCTGTTGAGGTCTGGA+TGG | 0.429052 | 7.2:-3734071 | None:intergenic |
| TTACCATAATGGGATCGTTC+AGG | 0.432032 | 7.2:+3733745 | MS.gene29334:CDS |
| GAGGGTTCTGTGGTTGACTT+TGG | 0.432290 | 7.2:+3736043 | MS.gene29334:CDS |
| ATTTCGGCGGCTGAGCAGTT+AGG | 0.433399 | 7.2:-3733927 | None:intergenic |
| CCAAAATAATTCTCTGTGAT+GGG | 0.435014 | 7.2:-3735065 | None:intergenic |
| ACATAATGAATGCAACTTCT+CGG | 0.437627 | 7.2:-3735039 | None:intergenic |
| ACAGTTGGTCTTACCATAAT+GGG | 0.440049 | 7.2:+3733735 | MS.gene29334:CDS |
| TGGGATCAAGGCATATACTA+TGG | 0.440374 | 7.2:+3736063 | MS.gene29334:CDS |
| TCCAAAATAATTCTCTGTGA+TGG | 0.443344 | 7.2:-3735066 | None:intergenic |
| GTCCAACAGCGCACTGAACT+TGG | 0.458552 | 7.2:-3735011 | None:intergenic |
| CTTTGACATAATCTTCCTTA+GGG | 0.470387 | 7.2:-3736012 | None:intergenic |
| GTTAATGAGTTTCTTTGTGT+CGG | 0.474240 | 7.2:+3734460 | MS.gene29334:CDS |
| AATTTGTGATGGTGTGTAGT+TGG | 0.477410 | 7.2:-3734276 | None:intergenic |
| AACAACTGTTTATAGGTCAT+GGG | 0.479720 | 7.2:+3734980 | MS.gene29334:intron |
| CATAATGAATGCAACTTCTC+GGG | 0.481674 | 7.2:-3735038 | None:intergenic |
| ACGTAATACAACCACAATGA+TGG | 0.482587 | 7.2:-3736146 | None:intergenic |
| TCCTCTGCTTACACCGTCCT+CGG | 0.486253 | 7.2:+3733897 | MS.gene29334:CDS |
| TTTCAACCCAGCATGTTGAC+TGG | 0.504611 | 7.2:+3735511 | MS.gene29334:CDS |
| TTCACACTCTGGTCTGTCAA+AGG | 0.509595 | 7.2:-3734422 | None:intergenic |
| GACGGTGTAAGCAGAGGAAG+TGG | 0.512906 | 7.2:-3733892 | None:intergenic |
| CTTCACTTAACCCCTCCTAT+GGG | 0.521637 | 7.2:+3733690 | MS.gene29334:CDS |
| TCACACTCTGGTCTGTCAAA+GGG | 0.522302 | 7.2:-3734421 | None:intergenic |
| TACGTTTCAATAATTTGTGA+TGG | 0.522555 | 7.2:-3734287 | None:intergenic |
| CCGTGTAATTCAAGCATACC+AGG | 0.525324 | 7.2:+3734125 | MS.gene29334:CDS |
| TTTCAGAATACTGAGGTGTA+AGG | 0.526250 | 7.2:-3735643 | None:intergenic |
| TGCTGCCTGGAGTGACCCTA+AGG | 0.528250 | 7.2:+3735997 | MS.gene29334:CDS |
| AGATCAAAAGCTTCACACTC+TGG | 0.531042 | 7.2:-3734433 | None:intergenic |
| CGGCGGCTGAGCAGTTAGGT+TGG | 0.531621 | 7.2:-3733923 | None:intergenic |
| TACCAAGTTCAGTGCGCTGT+TGG | 0.532355 | 7.2:+3735009 | MS.gene29334:CDS |
| AATTGCAGAGGCAGAGAAGA+TGG | 0.533070 | 7.2:+3733861 | MS.gene29334:intron |
| ATCTTCCTTAGGGTCACTCC+AGG | 0.536871 | 7.2:-3736002 | None:intergenic |
| GCTAAAACCAGTCAACATGC+TGG | 0.539656 | 7.2:-3735518 | None:intergenic |
| ACCATGCTAATACTGCTGCC+TGG | 0.540392 | 7.2:+3735984 | MS.gene29334:CDS |
| GCCTCAGCTGATGTATCATA+GGG | 0.543724 | 7.2:-3735411 | None:intergenic |
| TGACTCTTATTCCATCATTG+TGG | 0.547489 | 7.2:+3736135 | MS.gene29334:CDS |
| GAGTTTCTTTGTGTCGGCAA+AGG | 0.566077 | 7.2:+3734466 | MS.gene29334:CDS |
| CTATGGTGGTGTGTGTGCTA+CGG | 0.586058 | 7.2:+3736080 | MS.gene29334:CDS |
| CTAAAACCAGTCAACATGCT+GGG | 0.591004 | 7.2:-3735517 | None:intergenic |
| CAAAATAATTCTCTGTGATG+GGG | 0.597740 | 7.2:-3735064 | None:intergenic |
| TATGTCAAAGTCAATTGTGA+GGG | 0.603107 | 7.2:+3736025 | MS.gene29334:CDS |
| TCCAGGCAGCAGTATTAGCA+TGG | 0.613571 | 7.2:-3735985 | None:intergenic |
| AGTCAATTGTGAGGGTTCTG+TGG | 0.619017 | 7.2:+3736033 | MS.gene29334:CDS |
| ACAGCACGTGCATCTTCTCA+AGG | 0.621543 | 7.2:+3734800 | MS.gene29334:CDS |
| TGATACTTTGGATCGAAAAG+CGG | 0.622876 | 7.2:-3733955 | None:intergenic |
| GTTAGGTTGGACTCCGAGGA+CGG | 0.622942 | 7.2:-3733910 | None:intergenic |
| TCCGAGGACGGTGTAAGCAG+AGG | 0.625114 | 7.2:-3733898 | None:intergenic |
| CCTGGTATGCTTGAATTACA+CGG | 0.626987 | 7.2:-3734125 | None:intergenic |
| ACAACTGTTTATAGGTCATG+GGG | 0.627093 | 7.2:+3734981 | MS.gene29334:intron |
| AAGTCGAAGTTGGACACAGT+TGG | 0.629994 | 7.2:+3733720 | MS.gene29334:CDS |
| AGCAGTTAGGTTGGACTCCG+AGG | 0.631176 | 7.2:-3733914 | None:intergenic |
| TTATGTCAAAGTCAATTGTG+AGG | 0.634957 | 7.2:+3736024 | MS.gene29334:CDS |
| TCACTTAACCCCTCCTATGG+GGG | 0.636413 | 7.2:+3733692 | MS.gene29334:CDS |
| TTCACTTAACCCCTCCTATG+GGG | 0.637290 | 7.2:+3733691 | MS.gene29334:CDS |
| ATGAGGTGCTCTTTCCACAC+AGG | 0.664251 | 7.2:-3734750 | None:intergenic |
| ACCCTATGATACATCAGCTG+AGG | 0.667271 | 7.2:+3735410 | MS.gene29334:CDS |
| TAAGCAGAGGAAGTGGACAG+AGG | 0.671934 | 7.2:-3733885 | None:intergenic |
| TTACATGTTTCAGAATACTG+AGG | 0.676400 | 7.2:-3735650 | None:intergenic |
| GATCAAGGCATATACTATGG+TGG | 0.688229 | 7.2:+3736066 | MS.gene29334:CDS |
| AAAAGCGGCTTTAATTTCGG+CGG | 0.695406 | 7.2:-3733940 | None:intergenic |
| GAGACAAATGTGAAAGCATG+AGG | 0.702751 | 7.2:-3734767 | None:intergenic |
| AGCTTGTTCAAATTCCTGTG+TGG | 0.759817 | 7.2:+3734736 | MS.gene29334:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAATATATTGACAAA+GGG | - | chr7.2:3735190-3735209 | None:intergenic | 15.0% |
| !! | ATCTTTCTTATAAAACTAAA+AGG | + | chr7.2:3735204-3735223 | MS.gene29334:intron | 15.0% |
| !! | ATGATAGAAATAGATAAATA+GGG | - | chr7.2:3735254-3735273 | None:intergenic | 15.0% |
| !! | TAATAAATTTCTCAAAATGA+AGG | - | chr7.2:3734853-3734872 | None:intergenic | 15.0% |
| !! | TATGATAGAAATAGATAAAT+AGG | - | chr7.2:3735255-3735274 | None:intergenic | 15.0% |
| !!! | TATAACATATTATTACCTTT+TGG | + | chr7.2:3735301-3735320 | MS.gene29334:intron | 15.0% |
| !!! | TTCTCTTTAATTTATTACTT+AGG | + | chr7.2:3734038-3734057 | MS.gene29334:intron | 15.0% |
| !!! | TTTTTTTTTTTTTACTTGGT+GGG | + | chr7.2:3735139-3735158 | MS.gene29334:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTACTTGG+TGG | + | chr7.2:3735138-3735157 | MS.gene29334:intron | 15.0% |
| !! | AAAAATTGTATGATTCCAAA+AGG | - | chr7.2:3735319-3735338 | None:intergenic | 20.0% |
| !! | AAAGGAAATAAGAAATCAAA+TGG | - | chr7.2:3735363-3735382 | None:intergenic | 20.0% |
| !! | GAAAGATAATATATTGACAA+AGG | - | chr7.2:3735191-3735210 | None:intergenic | 20.0% |
| !! | GCAAAATCTTAAAATAAGAT+GGG | - | chr7.2:3735715-3735734 | None:intergenic | 20.0% |
| !! | TGCAAAATCTTAAAATAAGA+TGG | - | chr7.2:3735716-3735735 | None:intergenic | 20.0% |
| !! | TTAAACTCATCAATGTAAAA+TGG | - | chr7.2:3734707-3734726 | None:intergenic | 20.0% |
| !!! | CTTATTTTAAGATTTTGCAA+CGG | + | chr7.2:3735717-3735736 | MS.gene29334:intron | 20.0% |
| ! | AAATTTCTCAAAATGAAGGA+AGG | - | chr7.2:3734849-3734868 | None:intergenic | 25.0% |
| ! | AATGATTGATGTTGATACTT+TGG | - | chr7.2:3733970-3733989 | None:intergenic | 25.0% |
| ! | AATTTCTCAAAATGAAGGAA+GGG | - | chr7.2:3734848-3734867 | None:intergenic | 25.0% |
| ! | ACAATTTAGACCACATATAT+CGG | + | chr7.2:3734555-3734574 | MS.gene29334:intron | 25.0% |
| ! | ATAAATAGGGAAATTAAGCA+TGG | - | chr7.2:3735241-3735260 | None:intergenic | 25.0% |
| ! | ATACTGAAACATCAACAAAA+AGG | - | chr7.2:3735381-3735400 | None:intergenic | 25.0% |
| ! | CCGTAAATTTCAAAACAATA+CGG | - | chr7.2:3734336-3734355 | None:intergenic | 25.0% |
| ! | GCAGCTCATAAAAAATTTAT+TGG | - | chr7.2:3735614-3735633 | None:intergenic | 25.0% |
| ! | TATCTTCAACAACTGTTTAT+AGG | + | chr7.2:3734973-3734992 | MS.gene29334:intron | 25.0% |
| ! | TGAATTGAAGAGAATGAAAA+TGG | - | chr7.2:3734006-3734025 | None:intergenic | 25.0% |
| !! | TACGTTTCAATAATTTGTGA+TGG | - | chr7.2:3734290-3734309 | None:intergenic | 25.0% |
| !!! | ATTTTTTATGAGCTGCTTAT+AGG | + | chr7.2:3735618-3735637 | MS.gene29334:intron | 25.0% |
| !!! | CCGTATTGTTTTGAAATTTA+CGG | + | chr7.2:3734333-3734352 | MS.gene29334:intron | 25.0% |
| !!! | GAAAATTTGGTTTTCTTCTT+TGG | - | chr7.2:3735495-3735514 | None:intergenic | 25.0% |
| AAAAGTCATGTAGTGAGATT+TGG | - | chr7.2:3735836-3735855 | None:intergenic | 30.0% | |
| AACAACTGTTTATAGGTCAT+GGG | + | chr7.2:3734980-3734999 | MS.gene29334:intron | 30.0% | |
| ACATAATGAATGCAACTTCT+CGG | - | chr7.2:3735042-3735061 | None:intergenic | 30.0% | |
| ACATAATTTCATGTCGTGTA+AGG | - | chr7.2:3734525-3734544 | None:intergenic | 30.0% | |
| ACTTTGACATAATCTTCCTT+AGG | - | chr7.2:3736016-3736035 | None:intergenic | 30.0% | |
| CAAAATAATTCTCTGTGATG+GGG | - | chr7.2:3735067-3735086 | None:intergenic | 30.0% | |
| CCAAAATAATTCTCTGTGAT+GGG | - | chr7.2:3735068-3735087 | None:intergenic | 30.0% | |
| CTTTGACATAATCTTCCTTA+GGG | - | chr7.2:3736015-3736034 | None:intergenic | 30.0% | |
| GTTAATGAGTTTCTTTGTGT+CGG | + | chr7.2:3734460-3734479 | MS.gene29334:CDS | 30.0% | |
| GTTATTCTCAAACTTAGCTT+TGG | - | chr7.2:3735460-3735479 | None:intergenic | 30.0% | |
| GTTTAAATCCTTTAGTCAGA+GGG | + | chr7.2:3735916-3735935 | MS.gene29334:intron | 30.0% | |
| TATGTCAAAGTCAATTGTGA+GGG | + | chr7.2:3736025-3736044 | MS.gene29334:CDS | 30.0% | |
| TCCAAAATAATTCTCTGTGA+TGG | - | chr7.2:3735069-3735088 | None:intergenic | 30.0% | |
| TCTTTCAGTGAATGAATCAA+GGG | + | chr7.2:3735767-3735786 | MS.gene29334:intron | 30.0% | |
| TGTAAGCTACTTACTACAAT+CGG | + | chr7.2:3735668-3735687 | MS.gene29334:intron | 30.0% | |
| TTACATGTTTCAGAATACTG+AGG | - | chr7.2:3735653-3735672 | None:intergenic | 30.0% | |
| TTATGTCAAAGTCAATTGTG+AGG | + | chr7.2:3736024-3736043 | MS.gene29334:CDS | 30.0% | |
| ! | AATTTTTCGTCATTTCCACA+AGG | - | chr7.2:3735859-3735878 | None:intergenic | 30.0% |
| ! | ATTTCTAATTTTTCCTGCCA+TGG | + | chr7.2:3735892-3735911 | MS.gene29334:intron | 30.0% |
| ! | TTCTTTAAAGACACAGACAA+AGG | - | chr7.2:3733828-3733847 | None:intergenic | 30.0% |
| ! | TTTCATTTTCATCTCTGTTG+AGG | - | chr7.2:3734083-3734102 | None:intergenic | 30.0% |
| !!! | ATCACAGAGAATTATTTTGG+AGG | + | chr7.2:3735068-3735087 | MS.gene29334:CDS | 30.0% |
| !!! | TTTTAAGATTTTGCAACGGA+TGG | + | chr7.2:3735721-3735740 | MS.gene29334:intron | 30.0% |
| AAAACAAGAACGAATTGCAG+AGG | + | chr7.2:3733849-3733868 | MS.gene29334:intron | 35.0% | |
| ACAACTGTTTATAGGTCATG+GGG | + | chr7.2:3734981-3735000 | MS.gene29334:intron | 35.0% | |
| ACGTAATACAACCACAATGA+TGG | - | chr7.2:3736149-3736168 | None:intergenic | 35.0% | |
| ACTAAAGGATTTAAACGCCA+TGG | - | chr7.2:3735912-3735931 | None:intergenic | 35.0% | |
| ACTATGCTGTATATGATGTG+TGG | - | chr7.2:3734203-3734222 | None:intergenic | 35.0% | |
| CAACAACTGTTTATAGGTCA+TGG | + | chr7.2:3734979-3734998 | MS.gene29334:intron | 35.0% | |
| CATAATGAATGCAACTTCTC+GGG | - | chr7.2:3735041-3735060 | None:intergenic | 35.0% | |
| CGTTTAAATCCTTTAGTCAG+AGG | + | chr7.2:3735915-3735934 | MS.gene29334:intron | 35.0% | |
| CTCAGTGCTATCTATAGTTT+GGG | - | chr7.2:3735562-3735581 | None:intergenic | 35.0% | |
| CTCTTTCAGTGAATGAATCA+AGG | + | chr7.2:3735766-3735785 | MS.gene29334:intron | 35.0% | |
| GTAAGCTACTTACTACAATC+GGG | + | chr7.2:3735669-3735688 | MS.gene29334:intron | 35.0% | |
| TCAGTGCTATCTATAGTTTG+GGG | - | chr7.2:3735561-3735580 | None:intergenic | 35.0% | |
| TCTCAGTGCTATCTATAGTT+TGG | - | chr7.2:3735563-3735582 | None:intergenic | 35.0% | |
| TGACTCTTATTCCATCATTG+TGG | + | chr7.2:3736135-3736154 | MS.gene29334:CDS | 35.0% | |
| TGATACTTTGGATCGAAAAG+CGG | - | chr7.2:3733958-3733977 | None:intergenic | 35.0% | |
| TTCACATTTGTCTCTTCAAC+TGG | + | chr7.2:3734776-3734795 | MS.gene29334:CDS | 35.0% | |
| TTTCAGAATACTGAGGTGTA+AGG | - | chr7.2:3735646-3735665 | None:intergenic | 35.0% | |
| ! | AACATGCTGGGTTGAAAATT+TGG | - | chr7.2:3735508-3735527 | None:intergenic | 35.0% |
| ! | AATTTGTGATGGTGTGTAGT+TGG | - | chr7.2:3734279-3734298 | None:intergenic | 35.0% |
| ! | CCCATCACAGAGAATTATTT+TGG | + | chr7.2:3735065-3735084 | MS.gene29334:CDS | 35.0% |
| ! | TATGATGTGTGGTAGTGAAT+AGG | - | chr7.2:3734192-3734211 | None:intergenic | 35.0% |
| ! | TCGAAAAGCGGCTTTAATTT+CGG | - | chr7.2:3733946-3733965 | None:intergenic | 35.0% |
| ! | TCTGCAGTAAAAAAGCATGA+AGG | - | chr7.2:3734250-3734269 | None:intergenic | 35.0% |
| !! | ACAGTTGGTCTTACCATAAT+GGG | + | chr7.2:3733735-3733754 | MS.gene29334:CDS | 35.0% |
| !! | TTTGGTGTTTGGTTTCTCTA+TGG | + | chr7.2:3736108-3736127 | MS.gene29334:CDS | 35.0% |
| !!! | TCTTCTTTGGCTTTTGGTAT+CGG | - | chr7.2:3735482-3735501 | None:intergenic | 35.0% |
| !!! | TGCTGACTTTTCACTTTTCA+GGG | + | chr7.2:3734387-3734406 | MS.gene29334:intron | 35.0% |
| !!! | TGGTTTTCTTCTTTGGCTTT+TGG | - | chr7.2:3735488-3735507 | None:intergenic | 35.0% |
| ACAATGTCTCAACGTCACTT+GGG | + | chr7.2:3734654-3734673 | MS.gene29334:intron | 40.0% | |
| ACACAGACAAAGGAAAAGTG+CGG | - | chr7.2:3733818-3733837 | None:intergenic | 40.0% | |
| ACACCTTTAATCTGCAAGTG+TGG | + | chr7.2:3734612-3734631 | MS.gene29334:intron | 40.0% | |
| AGATCAAAAGCTTCACACTC+TGG | - | chr7.2:3734436-3734455 | None:intergenic | 40.0% | |
| AGTTAGTACCAAGTAGTACC+TGG | - | chr7.2:3734146-3734165 | None:intergenic | 40.0% | |
| CCTGGTATGCTTGAATTACA+CGG | - | chr7.2:3734128-3734147 | None:intergenic | 40.0% | |
| CTAAAACCAGTCAACATGCT+GGG | - | chr7.2:3735520-3735539 | None:intergenic | 40.0% | |
| CTGAAAAGTGAAAAGTCAGC+AGG | - | chr7.2:3734388-3734407 | None:intergenic | 40.0% | |
| CTGCATTTAATGTCCTACAC+TGG | + | chr7.2:3734587-3734606 | MS.gene29334:intron | 40.0% | |
| GATCAAGGCATATACTATGG+TGG | + | chr7.2:3736066-3736085 | MS.gene29334:CDS | 40.0% | |
| GATCCACACTTGCAGATTAA+AGG | - | chr7.2:3734618-3734637 | None:intergenic | 40.0% | |
| TACAATGTCTCAACGTCACT+TGG | + | chr7.2:3734653-3734672 | MS.gene29334:intron | 40.0% | |
| TAGACCACATATATCGGTGT+AGG | + | chr7.2:3734561-3734580 | MS.gene29334:intron | 40.0% | |
| TGGGATCAAGGCATATACTA+TGG | + | chr7.2:3736063-3736082 | MS.gene29334:CDS | 40.0% | |
| ! | AAAAGCGGCTTTAATTTCGG+CGG | - | chr7.2:3733943-3733962 | None:intergenic | 40.0% |
| ! | AAGATTTTGCAACGGATGGT+GGG | + | chr7.2:3735725-3735744 | MS.gene29334:intron | 40.0% |
| ! | AGCTTGTTCAAATTCCTGTG+TGG | + | chr7.2:3734736-3734755 | MS.gene29334:intron | 40.0% |
| ! | ATTAAAGGTGTGTCCAGTGT+AGG | - | chr7.2:3734603-3734622 | None:intergenic | 40.0% |
| ! | CACTACATGACTTTTCCTTG+TGG | + | chr7.2:3735841-3735860 | MS.gene29334:intron | 40.0% |
| ! | CTGTGTTTGATAACACTTGC+AGG | + | chr7.2:3735944-3735963 | MS.gene29334:intron | 40.0% |
| ! | GAGACAAATGTGAAAGCATG+AGG | - | chr7.2:3734770-3734789 | None:intergenic | 40.0% |
| ! | TAAGATTTTGCAACGGATGG+TGG | + | chr7.2:3735724-3735743 | MS.gene29334:intron | 40.0% |
| ! | TTACCATAATGGGATCGTTC+AGG | + | chr7.2:3733745-3733764 | MS.gene29334:CDS | 40.0% |
| ! | TTTTCATCTCTGTTGAGGTC+TGG | - | chr7.2:3734078-3734097 | None:intergenic | 40.0% |
| !! | CACAGTTGGTCTTACCATAA+TGG | + | chr7.2:3733734-3733753 | MS.gene29334:CDS | 40.0% |
| !! | CTACGGATGAATTTGGTGTT+TGG | + | chr7.2:3736097-3736116 | MS.gene29334:CDS | 40.0% |
| !! | TTTTGGAGGAGCTACTTAAC+AGG | + | chr7.2:3735082-3735101 | MS.gene29334:CDS | 40.0% |
| !!! | CTGCTGACTTTTCACTTTTC+AGG | + | chr7.2:3734386-3734405 | MS.gene29334:intron | 40.0% |
| !!! | TTTTTTTACTTGGTGGGCTG+TGG | + | chr7.2:3735145-3735164 | MS.gene29334:intron | 40.0% |
| AAGGATTTAAACGCCATGGC+AGG | - | chr7.2:3735908-3735927 | None:intergenic | 45.0% | |
| AAGTCGAAGTTGGACACAGT+TGG | + | chr7.2:3733720-3733739 | MS.gene29334:CDS | 45.0% | |
| AATTGCAGAGGCAGAGAAGA+TGG | + | chr7.2:3733861-3733880 | MS.gene29334:intron | 45.0% | |
| ACCCTATGATACATCAGCTG+AGG | + | chr7.2:3735410-3735429 | MS.gene29334:CDS | 45.0% | |
| ACGTGAATGCGTGATATTGC+AGG | + | chr7.2:3735806-3735825 | MS.gene29334:intron | 45.0% | |
| ACTTACTTTCCCCCATAGGA+GGG | - | chr7.2:3733704-3733723 | None:intergenic | 45.0% | |
| AGTCAATTGTGAGGGTTCTG+TGG | + | chr7.2:3736033-3736052 | MS.gene29334:CDS | 45.0% | |
| AGTTTGGGGAGTGAAGACAT+GGG | - | chr7.2:3735547-3735566 | None:intergenic | 45.0% | |
| CAACCTGAACGATCCCATTA+TGG | - | chr7.2:3733751-3733770 | None:intergenic | 45.0% | |
| CAAGCATACCAGGTACTACT+TGG | + | chr7.2:3734135-3734154 | MS.gene29334:intron | 45.0% | |
| CCGTGTAATTCAAGCATACC+AGG | + | chr7.2:3734125-3734144 | MS.gene29334:CDS | 45.0% | |
| CTTCACTTAACCCCTCCTAT+GGG | + | chr7.2:3733690-3733709 | MS.gene29334:CDS | 45.0% | |
| GATTGCTGATGAGACAGTCA+TGG | + | chr7.2:3735581-3735600 | MS.gene29334:intron | 45.0% | |
| GCCTCAGCTGATGTATCATA+GGG | - | chr7.2:3735414-3735433 | None:intergenic | 45.0% | |
| GCTAAAACCAGTCAACATGC+TGG | - | chr7.2:3735521-3735540 | None:intergenic | 45.0% | |
| GTGTCCTACACCGATATATG+TGG | - | chr7.2:3734568-3734587 | None:intergenic | 45.0% | |
| GTGTGTGCTACGGATGAATT+TGG | + | chr7.2:3736090-3736109 | MS.gene29334:CDS | 45.0% | |
| TAGTTTGGGGAGTGAAGACA+TGG | - | chr7.2:3735548-3735567 | None:intergenic | 45.0% | |
| TCACACTCTGGTCTGTCAAA+GGG | - | chr7.2:3734424-3734443 | None:intergenic | 45.0% | |
| TGCCTCAGCTGATGTATCAT+AGG | - | chr7.2:3735415-3735434 | None:intergenic | 45.0% | |
| TTCACACTCTGGTCTGTCAA+AGG | - | chr7.2:3734425-3734444 | None:intergenic | 45.0% | |
| TTCACTTAACCCCTCCTATG+GGG | + | chr7.2:3733691-3733710 | MS.gene29334:CDS | 45.0% | |
| TTCGACTTACTTTCCCCCAT+AGG | - | chr7.2:3733708-3733727 | None:intergenic | 45.0% | |
| TTTCAACCCAGCATGTTGAC+TGG | + | chr7.2:3735511-3735530 | MS.gene29334:CDS | 45.0% | |
| ! | AGATTTTGCAACGGATGGTG+GGG | + | chr7.2:3735726-3735745 | MS.gene29334:intron | 45.0% |
| ! | AGGGTTCTGTGGTTGACTTT+GGG | + | chr7.2:3736044-3736063 | MS.gene29334:CDS | 45.0% |
| ! | GAGTTTCTTTGTGTCGGCAA+AGG | + | chr7.2:3734466-3734485 | MS.gene29334:CDS | 45.0% |
| ! | TTCTTTGTGTCGGCAAAGGT+AGG | + | chr7.2:3734470-3734489 | MS.gene29334:intron | 45.0% |
| !! | TGTGGTTGACTTTGGGATCA+AGG | + | chr7.2:3736051-3736070 | MS.gene29334:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAATTGT+AGG | - | chr7.2:3735130-3735149 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTACT+TGG | + | chr7.2:3735135-3735154 | MS.gene29334:intron | 5.0% |
| ACAGCACGTGCATCTTCTCA+AGG | + | chr7.2:3734800-3734819 | MS.gene29334:CDS | 50.0% | |
| ACCATGCTAATACTGCTGCC+TGG | + | chr7.2:3735984-3736003 | MS.gene29334:CDS | 50.0% | |
| ATCTTCCTTAGGGTCACTCC+AGG | - | chr7.2:3736005-3736024 | None:intergenic | 50.0% | |
| CAGCAACTCCCTCTGACTAA+AGG | - | chr7.2:3735927-3735946 | None:intergenic | 50.0% | |
| CATCTCTGTTGAGGTCTGGA+TGG | - | chr7.2:3734074-3734093 | None:intergenic | 50.0% | |
| CTTACTTTCCCCCATAGGAG+GGG | - | chr7.2:3733703-3733722 | None:intergenic | 50.0% | |
| GACTTACTTTCCCCCATAGG+AGG | - | chr7.2:3733705-3733724 | None:intergenic | 50.0% | |
| GCTTCACTTAACCCCTCCTA+TGG | + | chr7.2:3733689-3733708 | MS.gene29334:CDS | 50.0% | |
| GGGGGAAAGTAAGTCGAAGT+TGG | + | chr7.2:3733710-3733729 | MS.gene29334:CDS | 50.0% | |
| TAAGCAGAGGAAGTGGACAG+AGG | - | chr7.2:3733888-3733907 | None:intergenic | 50.0% | |
| TACCAAGTTCAGTGCGCTGT+TGG | + | chr7.2:3735009-3735028 | MS.gene29334:CDS | 50.0% | |
| TCACTTAACCCCTCCTATGG+GGG | + | chr7.2:3733692-3733711 | MS.gene29334:CDS | 50.0% | |
| TCCAGGCAGCAGTATTAGCA+TGG | - | chr7.2:3735988-3736007 | None:intergenic | 50.0% | |
| ! | ATGAGGTGCTCTTTCCACAC+AGG | - | chr7.2:3734753-3734772 | None:intergenic | 50.0% |
| ! | CTATGGTGGTGTGTGTGCTA+CGG | + | chr7.2:3736080-3736099 | MS.gene29334:CDS | 50.0% |
| ! | GAGGGTTCTGTGGTTGACTT+TGG | + | chr7.2:3736043-3736062 | MS.gene29334:CDS | 50.0% |
| ATTTCGGCGGCTGAGCAGTT+AGG | - | chr7.2:3733930-3733949 | None:intergenic | 55.0% | |
| GACGGTGTAAGCAGAGGAAG+TGG | - | chr7.2:3733895-3733914 | None:intergenic | 55.0% | |
| GTCCAACAGCGCACTGAACT+TGG | - | chr7.2:3735014-3735033 | None:intergenic | 55.0% | |
| TCCTCTGCTTACACCGTCCT+CGG | + | chr7.2:3733897-3733916 | MS.gene29334:CDS | 55.0% | |
| !! | AGCAGTTAGGTTGGACTCCG+AGG | - | chr7.2:3733917-3733936 | None:intergenic | 55.0% |
| !! | GTTAGGTTGGACTCCGAGGA+CGG | - | chr7.2:3733913-3733932 | None:intergenic | 55.0% |
| TCCGAGGACGGTGTAAGCAG+AGG | - | chr7.2:3733901-3733920 | None:intergenic | 60.0% | |
| TGCTGCCTGGAGTGACCCTA+AGG | + | chr7.2:3735997-3736016 | MS.gene29334:CDS | 60.0% | |
| !! | ACGGATGGTGGGGAAGTGGT+AGG | + | chr7.2:3735736-3735755 | MS.gene29334:intron | 60.0% |
| !! | CGGATGGTGGGGAAGTGGTA+GGG | + | chr7.2:3735737-3735756 | MS.gene29334:intron | 60.0% |
| !! | GATGGTGGGGAAGTGGTAGG+GGG | + | chr7.2:3735739-3735758 | MS.gene29334:intron | 60.0% |
| !! | GGATGGTGGGGAAGTGGTAG+GGG | + | chr7.2:3735738-3735757 | MS.gene29334:intron | 60.0% |
| !! | TGCAACGGATGGTGGGGAAG+TGG | + | chr7.2:3735732-3735751 | MS.gene29334:intron | 60.0% |
| CGGCGGCTGAGCAGTTAGGT+TGG | - | chr7.2:3733926-3733945 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 3733687 | 3736171 | 3733687 | ID=MS.gene29334 |
| chr7.2 | mRNA | 3733687 | 3736171 | 3733687 | ID=MS.gene29334.t1;Parent=MS.gene29334 |
| chr7.2 | exon | 3733687 | 3733766 | 3733687 | ID=MS.gene29334.t1.exon1;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3733687 | 3733766 | 3733687 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3733869 | 3733971 | 3733869 | ID=MS.gene29334.t1.exon2;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3733869 | 3733971 | 3733869 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3734060 | 3734146 | 3734060 | ID=MS.gene29334.t1.exon3;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3734060 | 3734146 | 3734060 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3734269 | 3734306 | 3734269 | ID=MS.gene29334.t1.exon4;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3734269 | 3734306 | 3734269 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3734408 | 3734487 | 3734408 | ID=MS.gene29334.t1.exon5;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3734408 | 3734487 | 3734408 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3734738 | 3734821 | 3734738 | ID=MS.gene29334.t1.exon6;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3734738 | 3734821 | 3734738 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3734995 | 3735103 | 3734995 | ID=MS.gene29334.t1.exon7;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3734995 | 3735103 | 3734995 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3735398 | 3735532 | 3735398 | ID=MS.gene29334.t1.exon8;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3735398 | 3735532 | 3735398 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3735640 | 3735668 | 3735640 | ID=MS.gene29334.t1.exon9;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3735640 | 3735668 | 3735640 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| chr7.2 | exon | 3735966 | 3736171 | 3735966 | ID=MS.gene29334.t1.exon10;Parent=MS.gene29334.t1 |
| chr7.2 | CDS | 3735966 | 3736171 | 3735966 | ID=cds.MS.gene29334.t1;Parent=MS.gene29334.t1 |
| Gene Sequence |
| Protein sequence |
