Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31589.t1 | XP_003588599.1 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 6.90E-225 | 789.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31589.t1 | Q9LP45 | 86.3 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 2.9e-195 | 682.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31589.t1 | G7I549 | 99.8 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 5.0e-225 | 789.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene31589 | -0.801521 | 8.66E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene31589 | 0.852332 | 4.95E-61 | -1.69E-46 |
| MS.gene052825 | MS.gene31589 | -0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene31589 | -0.822035 | 2.94E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene31589 | -0.803754 | 3.00E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene31589 | 0.809629 | 1.72E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene31589 | -0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene31589 | -0.806729 | 7.14E-50 | -1.69E-46 |
| MS.gene059103 | MS.gene31589 | 0.957957 | 7.69E-116 | -1.69E-46 |
| MS.gene059303 | MS.gene31589 | -0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene059480 | MS.gene31589 | 0.959702 | 9.82E-118 | -1.69E-46 |
| MS.gene06077 | MS.gene31589 | -0.807395 | 5.16E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31589.t1 | MTR_1g009010 | 99.762 | 421 | 1 | 0 | 1 | 421 | 1 | 421 | 0.0 | 851 |
| MS.gene31589.t1 | MTR_3g109300 | 93.079 | 419 | 29 | 0 | 2 | 420 | 252 | 670 | 0.0 | 770 |
| MS.gene31589.t1 | MTR_7g087530 | 24.251 | 334 | 234 | 6 | 55 | 378 | 76 | 400 | 2.25e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31589.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
| MS.gene31589.t1 | AT1G29150 | 86.265 | 415 | 56 | 1 | 7 | 421 | 6 | 419 | 0.0 | 704 |
| MS.gene31589.t1 | AT2G26990 | 21.690 | 355 | 259 | 7 | 34 | 378 | 55 | 400 | 5.21e-16 | 80.1 |
Find 93 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAATTTCAGGGATCTTT+TGG | 0.192366 | 1.1:-10636126 | None:intergenic |
| AAGCAGTTTCAAATAATTTC+AGG | 0.248613 | 1.1:-10636136 | None:intergenic |
| TACACAGCAACATGTATTTC+AGG | 0.261616 | 1.1:-10635992 | None:intergenic |
| GCAATATCTTGGACCTGATT+TGG | 0.308447 | 1.1:+10636073 | MS.gene31589:CDS |
| ATATTGCAGGCCTGCTTTAG+AGG | 0.337336 | 1.1:-10636057 | None:intergenic |
| TCTTTCATGCGCAGAGCATC+AGG | 0.340066 | 1.1:-10635363 | None:intergenic |
| TTCAGGCTAAAGACGGCTTT+GGG | 0.358755 | 1.1:-10635975 | None:intergenic |
| CAAGAAGTTCGCTGGGACAT+TGG | 0.366159 | 1.1:+10636355 | MS.gene31589:CDS |
| GCTTTCATTGCATCCAAATC+AGG | 0.369042 | 1.1:-10636086 | None:intergenic |
| TAGAAACCATTTCTAATGTT+GGG | 0.370156 | 1.1:+10636444 | MS.gene31589:CDS |
| GAAATGGTTTCTAAAGTTGC+AGG | 0.374373 | 1.1:-10636434 | None:intergenic |
| TTTCAGGCTAAAGACGGCTT+TGG | 0.375816 | 1.1:-10635976 | None:intergenic |
| CAAGCTTTGACTCTCCTTAG+TGG | 0.388037 | 1.1:+10635678 | MS.gene31589:CDS |
| GACTTTCCCAACATTAGAAA+TGG | 0.391872 | 1.1:-10636450 | None:intergenic |
| CCTTCTCAGGCAAGAGAATA+GGG | 0.395870 | 1.1:+10635410 | MS.gene31589:CDS |
| AATCCCACTCTGCAAATCTA+TGG | 0.395909 | 1.1:-10635871 | None:intergenic |
| CTTTCGCTCCACGTGATCAA+TGG | 0.400421 | 1.1:-10636312 | None:intergenic |
| CGAGACTTCAAGGCACAGTT+GGG | 0.400670 | 1.1:+10636161 | MS.gene31589:CDS |
| TTTGACTCTCCTTAGTGGCT+TGG | 0.409710 | 1.1:+10635683 | MS.gene31589:CDS |
| AACTGCTTTACGAGACTTCA+AGG | 0.415681 | 1.1:+10636151 | MS.gene31589:CDS |
| TACTCTTCTGATGGAAAGTA+AGG | 0.419643 | 1.1:+10635647 | MS.gene31589:CDS |
| CAAACCTCACCGACCTTCTC+AGG | 0.419854 | 1.1:+10635397 | MS.gene31589:CDS |
| ATCCCTGTATGATACCCTTC+TGG | 0.426885 | 1.1:+10636214 | MS.gene31589:CDS |
| AAAGCAGGCCTGCAATATCT+TGG | 0.428220 | 1.1:+10636062 | MS.gene31589:CDS |
| TCCATTCTTTATCGTGTACT+TGG | 0.428345 | 1.1:+10635324 | MS.gene31589:CDS |
| GCTTGGTCAAAGAGGTTAGA+AGG | 0.428699 | 1.1:+10635700 | MS.gene31589:CDS |
| TTAGAAACCATTTCTAATGT+TGG | 0.430658 | 1.1:+10636443 | MS.gene31589:CDS |
| ACCTTCTCAGGCAAGAGAAT+AGG | 0.449371 | 1.1:+10635409 | MS.gene31589:CDS |
| GTCTATTGCTCAGGCATTGG+AGG | 0.453941 | 1.1:+10635278 | MS.gene31589:CDS |
| GAGATCTCATGTCATTATCT+TGG | 0.457490 | 1.1:-10636498 | None:intergenic |
| AGCAGTTTCAAATAATTTCA+GGG | 0.458625 | 1.1:-10636135 | None:intergenic |
| AATTTCACTATGCAAAGAAA+TGG | 0.464269 | 1.1:+10635563 | MS.gene31589:CDS |
| AGCTGTTCTTGCAGCTGTGA+GGG | 0.469625 | 1.1:-10635811 | None:intergenic |
| GCAATTTCAACCCTTGAGAA+TGG | 0.470337 | 1.1:-10636263 | None:intergenic |
| CCTCTTTGACCAAGCCACTA+AGG | 0.474592 | 1.1:-10635692 | None:intergenic |
| GCTCCAGAAGGGTATCATAC+AGG | 0.475823 | 1.1:-10636217 | None:intergenic |
| TTTCGCTCCACGTGATCAAT+GGG | 0.485219 | 1.1:-10636311 | None:intergenic |
| AATCAGGTCCAAGATATTGC+AGG | 0.487957 | 1.1:-10636070 | None:intergenic |
| GATTCTGTTGCTAAAATACC+AGG | 0.490110 | 1.1:+10635525 | MS.gene31589:CDS |
| GGGATGATCCAATCGTTCAT+AGG | 0.490676 | 1.1:+10636183 | MS.gene31589:CDS |
| TGCTCTGCGCATGAAAGAGC+AGG | 0.492288 | 1.1:+10635368 | MS.gene31589:CDS |
| CCCTATTCTCTTGCCTGAGA+AGG | 0.492528 | 1.1:-10635410 | None:intergenic |
| CACAACAGAGTCTATTGCTC+AGG | 0.495213 | 1.1:+10635269 | MS.gene31589:CDS |
| AGAGTCTATTGCTCAGGCAT+TGG | 0.499267 | 1.1:+10635275 | MS.gene31589:CDS |
| ACCAAGTACACGATAAAGAA+TGG | 0.500491 | 1.1:-10635325 | None:intergenic |
| CAGCTGTTCTTGCAGCTGTG+AGG | 0.517302 | 1.1:-10635812 | None:intergenic |
| CTTTCTGAGGCAGCGAATTG+AGG | 0.519044 | 1.1:+10635614 | MS.gene31589:CDS |
| GTCAAGTGCCTATGAACGAT+TGG | 0.521697 | 1.1:-10636191 | None:intergenic |
| GGGACATTGGATCAAGGTGC+TGG | 0.531380 | 1.1:+10636368 | MS.gene31589:CDS |
| TCTATGGCACCTTGTTGAGC+TGG | 0.543072 | 1.1:-10635855 | None:intergenic |
| GCAATAGACTCTGTTGTGGC+AGG | 0.543654 | 1.1:-10635264 | None:intergenic |
| CTCCAGAAGGGTATCATACA+GGG | 0.544409 | 1.1:-10636216 | None:intergenic |
| CTCAATTCGCTGCCTCAGAA+AGG | 0.545619 | 1.1:-10635613 | None:intergenic |
| TGCAAAGATTCTGCTCCAGA+AGG | 0.549152 | 1.1:-10636229 | None:intergenic |
| CATGTTGCTGTGTAAGATCA+TGG | 0.549562 | 1.1:+10636001 | MS.gene31589:CDS |
| CGAGCTTCCCATTGATCACG+TGG | 0.562921 | 1.1:+10636304 | MS.gene31589:CDS |
| ACGAGACTTCAAGGCACAGT+TGG | 0.565359 | 1.1:+10636160 | MS.gene31589:CDS |
| CCTTAGTGGCTTGGTCAAAG+AGG | 0.571283 | 1.1:+10635692 | MS.gene31589:CDS |
| AGAGCATCAGGGGATGAAGA+AGG | 0.572998 | 1.1:-10635351 | None:intergenic |
| GATTGATTGAACCATTCTCA+AGG | 0.573343 | 1.1:+10636252 | MS.gene31589:CDS |
| GATTCTTCATGCTGAAGAGA+AGG | 0.574447 | 1.1:+10635890 | MS.gene31589:CDS |
| GTGCCATAGATTTGCAGAGT+GGG | 0.575197 | 1.1:+10635868 | MS.gene31589:CDS |
| TTCGCTGGGACATTGGATCA+AGG | 0.575199 | 1.1:+10636362 | MS.gene31589:CDS |
| GCAAGTCTATGTCTACAAGT+AGG | 0.577240 | 1.1:-10635737 | None:intergenic |
| CTTTCATGCGCAGAGCATCA+GGG | 0.581958 | 1.1:-10635362 | None:intergenic |
| GGAATCATATCCTCTAAAGC+AGG | 0.583289 | 1.1:+10636047 | MS.gene31589:CDS |
| TAGACTCTGTTGTGGCAGGA+AGG | 0.584069 | 1.1:-10635260 | None:intergenic |
| CATGTATTTCAGGCTAAAGA+CGG | 0.589827 | 1.1:-10635982 | None:intergenic |
| AAGGCTTGCTACTCTTCTGA+TGG | 0.595479 | 1.1:+10635638 | MS.gene31589:CDS |
| TGAGGCAGCGAATTGAGGCA+AGG | 0.595879 | 1.1:+10635619 | MS.gene31589:CDS |
| AGTCAAGCTGATGATGTGGC+TGG | 0.596537 | 1.1:+10636026 | MS.gene31589:CDS |
| ATGGCACCTTGTTGAGCTGG+TGG | 0.598642 | 1.1:-10635852 | None:intergenic |
| TTCTAATGTTGGGAAAGTCG+TGG | 0.601063 | 1.1:+10636454 | MS.gene31589:CDS |
| ATTTGTAACTCAGATGTCCC+TGG | 0.601526 | 1.1:-10635543 | None:intergenic |
| TTTCATGCGCAGAGCATCAG+GGG | 0.602569 | 1.1:-10635361 | None:intergenic |
| CTTGCCTGAGAAGGTCGGTG+AGG | 0.609314 | 1.1:-10635401 | None:intergenic |
| ATTGATTGAACCATTCTCAA+GGG | 0.609884 | 1.1:+10636253 | MS.gene31589:CDS |
| GCAGCCTTCTCACTCAGTTG+AGG | 0.611712 | 1.1:+10635445 | MS.gene31589:CDS |
| GCAAAGATTCTGCTCCAGAA+GGG | 0.618885 | 1.1:-10636228 | None:intergenic |
| ATGACCTCAACTGAGTGAGA+AGG | 0.626789 | 1.1:-10635449 | None:intergenic |
| ATGAAAAGCGTACCTTTCTG+AGG | 0.631690 | 1.1:+10635601 | MS.gene31589:CDS |
| TATGCAAAGAAATGGTGCAA+TGG | 0.632106 | 1.1:+10635571 | MS.gene31589:CDS |
| GGCAGGAAGGAAAGAAGACA+TGG | 0.635532 | 1.1:-10635247 | None:intergenic |
| ATTCTCTTGCCTGAGAAGGT+CGG | 0.636643 | 1.1:-10635406 | None:intergenic |
| TAGGATCGTCAAAGATGACA+AGG | 0.650133 | 1.1:-10636394 | None:intergenic |
| GAGACTTCAAGGCACAGTTG+GGG | 0.656008 | 1.1:+10636162 | MS.gene31589:CDS |
| TATGTTCCACCAGCTCAACA+AGG | 0.660678 | 1.1:+10635846 | MS.gene31589:CDS |
| GGTTAGTCAAGCTGATGATG+TGG | 0.670365 | 1.1:+10636022 | MS.gene31589:CDS |
| AAAACTGCAAAGATTGTGAG+GGG | 0.672793 | 1.1:+10635495 | MS.gene31589:CDS |
| ATTCTGTTGCTAAAATACCA+GGG | 0.677431 | 1.1:+10635526 | MS.gene31589:CDS |
| AGACTTCAAGGCACAGTTGG+GGG | 0.696743 | 1.1:+10636163 | MS.gene31589:CDS |
| CTGAGCAATAGACTCTGTTG+TGG | 0.698808 | 1.1:-10635268 | None:intergenic |
| GGTGCCATAGATTTGCAGAG+TGG | 0.753705 | 1.1:+10635867 | MS.gene31589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGCAGTTTCAAATAATTTC+AGG | - | chr1.1:10636139-10636158 | None:intergenic | 25.0% |
| ! | AATTTCACTATGCAAAGAAA+TGG | + | chr1.1:10635563-10635582 | MS.gene31589:CDS | 25.0% |
| ! | AGCAGTTTCAAATAATTTCA+GGG | - | chr1.1:10636138-10636157 | None:intergenic | 25.0% |
| ! | TAGAAACCATTTCTAATGTT+GGG | + | chr1.1:10636444-10636463 | MS.gene31589:CDS | 25.0% |
| ! | TTAGAAACCATTTCTAATGT+TGG | + | chr1.1:10636443-10636462 | MS.gene31589:CDS | 25.0% |
| !! | AAATAATTTCAGGGATCTTT+TGG | - | chr1.1:10636129-10636148 | None:intergenic | 25.0% |
| AAAAACTGCAAAGATTGTGA+GGG | + | chr1.1:10635494-10635513 | MS.gene31589:CDS | 30.0% | |
| ATTCTGTTGCTAAAATACCA+GGG | + | chr1.1:10635526-10635545 | MS.gene31589:CDS | 30.0% | |
| ATTGATTGAACCATTCTCAA+GGG | + | chr1.1:10636253-10636272 | MS.gene31589:CDS | 30.0% | |
| ! | GGATATATAGCATCAGTTTT+AGG | - | chr1.1:10636416-10636435 | None:intergenic | 30.0% |
| !!! | TGCTTTGGGAAGATTTTTTA+AGG | - | chr1.1:10635784-10635803 | None:intergenic | 30.0% |
| AAAACTGCAAAGATTGTGAG+GGG | + | chr1.1:10635495-10635514 | MS.gene31589:CDS | 35.0% | |
| ACCAAGTACACGATAAAGAA+TGG | - | chr1.1:10635328-10635347 | None:intergenic | 35.0% | |
| CAAAAACTGCAAAGATTGTG+AGG | + | chr1.1:10635493-10635512 | MS.gene31589:CDS | 35.0% | |
| CATGTATTTCAGGCTAAAGA+CGG | - | chr1.1:10635985-10636004 | None:intergenic | 35.0% | |
| GACTTTCCCAACATTAGAAA+TGG | - | chr1.1:10636453-10636472 | None:intergenic | 35.0% | |
| GATTCTGTTGCTAAAATACC+AGG | + | chr1.1:10635525-10635544 | MS.gene31589:CDS | 35.0% | |
| GATTGATTGAACCATTCTCA+AGG | + | chr1.1:10636252-10636271 | MS.gene31589:CDS | 35.0% | |
| TACACAGCAACATGTATTTC+AGG | - | chr1.1:10635995-10636014 | None:intergenic | 35.0% | |
| TACTCTTCTGATGGAAAGTA+AGG | + | chr1.1:10635647-10635666 | MS.gene31589:CDS | 35.0% | |
| TATGCAAAGAAATGGTGCAA+TGG | + | chr1.1:10635571-10635590 | MS.gene31589:CDS | 35.0% | |
| TCCATTCTTTATCGTGTACT+TGG | + | chr1.1:10635324-10635343 | MS.gene31589:CDS | 35.0% | |
| ! | AATCTTTGCAGTTTTTGCCT+TGG | - | chr1.1:10635490-10635509 | None:intergenic | 35.0% |
| ! | ATCTTTGCAGTTTTTGCCTT+GGG | - | chr1.1:10635489-10635508 | None:intergenic | 35.0% |
| ! | ATTCTTTTCCTTGATTCCCA+AGG | + | chr1.1:10635470-10635489 | MS.gene31589:CDS | 35.0% |
| ! | ATTTTAGACAAGAAGTTCGC+TGG | + | chr1.1:10636347-10636366 | MS.gene31589:CDS | 35.0% |
| ! | TTTTAGACAAGAAGTTCGCT+GGG | + | chr1.1:10636348-10636367 | MS.gene31589:CDS | 35.0% |
| !! | GAAATGGTTTCTAAAGTTGC+AGG | - | chr1.1:10636437-10636456 | None:intergenic | 35.0% |
| AACTGCTTTACGAGACTTCA+AGG | + | chr1.1:10636151-10636170 | MS.gene31589:CDS | 40.0% | |
| AATCAGGTCCAAGATATTGC+AGG | - | chr1.1:10636073-10636092 | None:intergenic | 40.0% | |
| AATCCCACTCTGCAAATCTA+TGG | - | chr1.1:10635874-10635893 | None:intergenic | 40.0% | |
| ATTTGTAACTCAGATGTCCC+TGG | - | chr1.1:10635546-10635565 | None:intergenic | 40.0% | |
| CATGTTGCTGTGTAAGATCA+TGG | + | chr1.1:10636001-10636020 | MS.gene31589:CDS | 40.0% | |
| GATTCTTCATGCTGAAGAGA+AGG | + | chr1.1:10635890-10635909 | MS.gene31589:CDS | 40.0% | |
| GCAAGTCTATGTCTACAAGT+AGG | - | chr1.1:10635740-10635759 | None:intergenic | 40.0% | |
| GCAATATCTTGGACCTGATT+TGG | + | chr1.1:10636073-10636092 | MS.gene31589:CDS | 40.0% | |
| GCAATTTCAACCCTTGAGAA+TGG | - | chr1.1:10636266-10636285 | None:intergenic | 40.0% | |
| GCTTTCATTGCATCCAAATC+AGG | - | chr1.1:10636089-10636108 | None:intergenic | 40.0% | |
| TAGGATCGTCAAAGATGACA+AGG | - | chr1.1:10636397-10636416 | None:intergenic | 40.0% | |
| TTCTAATGTTGGGAAAGTCG+TGG | + | chr1.1:10636454-10636473 | MS.gene31589:CDS | 40.0% | |
| ! | AGTTTTTGCCTTGGGAATCA+AGG | - | chr1.1:10635481-10635500 | None:intergenic | 40.0% |
| ! | ATGAAAAGCGTACCTTTCTG+AGG | + | chr1.1:10635601-10635620 | MS.gene31589:CDS | 40.0% |
| ! | TCGTGGACAGTCTTTTTGTT+AGG | + | chr1.1:10636471-10636490 | MS.gene31589:CDS | 40.0% |
| !! | GGAATCATATCCTCTAAAGC+AGG | + | chr1.1:10636047-10636066 | MS.gene31589:CDS | 40.0% |
| AAAGCAGGCCTGCAATATCT+TGG | + | chr1.1:10636062-10636081 | MS.gene31589:CDS | 45.0% | |
| ACCTTCTCAGGCAAGAGAAT+AGG | + | chr1.1:10635409-10635428 | MS.gene31589:CDS | 45.0% | |
| AGAGTCTATTGCTCAGGCAT+TGG | + | chr1.1:10635275-10635294 | MS.gene31589:CDS | 45.0% | |
| ATATTGCAGGCCTGCTTTAG+AGG | - | chr1.1:10636060-10636079 | None:intergenic | 45.0% | |
| ATCCCTGTATGATACCCTTC+TGG | + | chr1.1:10636214-10636233 | MS.gene31589:CDS | 45.0% | |
| ATGACCTCAACTGAGTGAGA+AGG | - | chr1.1:10635452-10635471 | None:intergenic | 45.0% | |
| ATTCTCTTGCCTGAGAAGGT+CGG | - | chr1.1:10635409-10635428 | None:intergenic | 45.0% | |
| CACAACAGAGTCTATTGCTC+AGG | + | chr1.1:10635269-10635288 | MS.gene31589:CDS | 45.0% | |
| CCTTCTCAGGCAAGAGAATA+GGG | + | chr1.1:10635410-10635429 | MS.gene31589:CDS | 45.0% | |
| CTGAGCAATAGACTCTGTTG+TGG | - | chr1.1:10635271-10635290 | None:intergenic | 45.0% | |
| GCAAAGATTCTGCTCCAGAA+GGG | - | chr1.1:10636231-10636250 | None:intergenic | 45.0% | |
| GCTTGGTCAAAGAGGTTAGA+AGG | + | chr1.1:10635700-10635719 | MS.gene31589:CDS | 45.0% | |
| GGGATGATCCAATCGTTCAT+AGG | + | chr1.1:10636183-10636202 | MS.gene31589:CDS | 45.0% | |
| GTCAAGTGCCTATGAACGAT+TGG | - | chr1.1:10636194-10636213 | None:intergenic | 45.0% | |
| GTGCCATAGATTTGCAGAGT+GGG | + | chr1.1:10635868-10635887 | MS.gene31589:CDS | 45.0% | |
| TATGTTCCACCAGCTCAACA+AGG | + | chr1.1:10635846-10635865 | MS.gene31589:CDS | 45.0% | |
| TGCAAAGATTCTGCTCCAGA+AGG | - | chr1.1:10636232-10636251 | None:intergenic | 45.0% | |
| TTCAGGCTAAAGACGGCTTT+GGG | - | chr1.1:10635978-10635997 | None:intergenic | 45.0% | |
| TTTCAGGCTAAAGACGGCTT+TGG | - | chr1.1:10635979-10635998 | None:intergenic | 45.0% | |
| TTTCGCTCCACGTGATCAAT+GGG | - | chr1.1:10636314-10636333 | None:intergenic | 45.0% | |
| TTTGACTCTCCTTAGTGGCT+TGG | + | chr1.1:10635683-10635702 | MS.gene31589:CDS | 45.0% | |
| ! | CAAGCTTTGACTCTCCTTAG+TGG | + | chr1.1:10635678-10635697 | MS.gene31589:CDS | 45.0% |
| ! | GGTTAGTCAAGCTGATGATG+TGG | + | chr1.1:10636022-10636041 | MS.gene31589:CDS | 45.0% |
| !! | AAGGCTTGCTACTCTTCTGA+TGG | + | chr1.1:10635638-10635657 | MS.gene31589:CDS | 45.0% |
| !! | CTCCAGAAGGGTATCATACA+GGG | - | chr1.1:10636219-10636238 | None:intergenic | 45.0% |
| ACGAGACTTCAAGGCACAGT+TGG | + | chr1.1:10636160-10636179 | MS.gene31589:CDS | 50.0% | |
| AGACTTCAAGGCACAGTTGG+GGG | + | chr1.1:10636163-10636182 | MS.gene31589:CDS | 50.0% | |
| AGCTGTTCTTGCAGCTGTGA+GGG | - | chr1.1:10635814-10635833 | None:intergenic | 50.0% | |
| CAAGAAGTTCGCTGGGACAT+TGG | + | chr1.1:10636355-10636374 | MS.gene31589:CDS | 50.0% | |
| CCCTATTCTCTTGCCTGAGA+AGG | - | chr1.1:10635413-10635432 | None:intergenic | 50.0% | |
| CCTCTTTGACCAAGCCACTA+AGG | - | chr1.1:10635695-10635714 | None:intergenic | 50.0% | |
| CGAGACTTCAAGGCACAGTT+GGG | + | chr1.1:10636161-10636180 | MS.gene31589:CDS | 50.0% | |
| CTCAATTCGCTGCCTCAGAA+AGG | - | chr1.1:10635616-10635635 | None:intergenic | 50.0% | |
| CTTTCGCTCCACGTGATCAA+TGG | - | chr1.1:10636315-10636334 | None:intergenic | 50.0% | |
| GAGACTTCAAGGCACAGTTG+GGG | + | chr1.1:10636162-10636181 | MS.gene31589:CDS | 50.0% | |
| GCAATAGACTCTGTTGTGGC+AGG | - | chr1.1:10635267-10635286 | None:intergenic | 50.0% | |
| TAGACTCTGTTGTGGCAGGA+AGG | - | chr1.1:10635263-10635282 | None:intergenic | 50.0% | |
| TCTATGGCACCTTGTTGAGC+TGG | - | chr1.1:10635858-10635877 | None:intergenic | 50.0% | |
| TTCGCTGGGACATTGGATCA+AGG | + | chr1.1:10636362-10636381 | MS.gene31589:CDS | 50.0% | |
| ! | AGAGCATCAGGGGATGAAGA+AGG | - | chr1.1:10635354-10635373 | None:intergenic | 50.0% |
| ! | AGTCAAGCTGATGATGTGGC+TGG | + | chr1.1:10636026-10636045 | MS.gene31589:CDS | 50.0% |
| ! | CTTTCATGCGCAGAGCATCA+GGG | - | chr1.1:10635365-10635384 | None:intergenic | 50.0% |
| ! | GGTGCCATAGATTTGCAGAG+TGG | + | chr1.1:10635867-10635886 | MS.gene31589:CDS | 50.0% |
| ! | GTGAGGGCAGCTTTTGCTTT+GGG | - | chr1.1:10635798-10635817 | None:intergenic | 50.0% |
| ! | TCTTTCATGCGCAGAGCATC+AGG | - | chr1.1:10635366-10635385 | None:intergenic | 50.0% |
| ! | TGTGAGGGCAGCTTTTGCTT+TGG | - | chr1.1:10635799-10635818 | None:intergenic | 50.0% |
| ! | TTTCATGCGCAGAGCATCAG+GGG | - | chr1.1:10635364-10635383 | None:intergenic | 50.0% |
| !! | CCTTAGTGGCTTGGTCAAAG+AGG | + | chr1.1:10635692-10635711 | MS.gene31589:CDS | 50.0% |
| !! | CTTTCTGAGGCAGCGAATTG+AGG | + | chr1.1:10635614-10635633 | MS.gene31589:CDS | 50.0% |
| !! | GCTCCAGAAGGGTATCATAC+AGG | - | chr1.1:10636220-10636239 | None:intergenic | 50.0% |
| !! | GTCTATTGCTCAGGCATTGG+AGG | + | chr1.1:10635278-10635297 | MS.gene31589:CDS | 50.0% |
| ATGGCACCTTGTTGAGCTGG+TGG | - | chr1.1:10635855-10635874 | None:intergenic | 55.0% | |
| CAAACCTCACCGACCTTCTC+AGG | + | chr1.1:10635397-10635416 | MS.gene31589:CDS | 55.0% | |
| CAGCTGTTCTTGCAGCTGTG+AGG | - | chr1.1:10635815-10635834 | None:intergenic | 55.0% | |
| CGAGCTTCCCATTGATCACG+TGG | + | chr1.1:10636304-10636323 | MS.gene31589:CDS | 55.0% | |
| GCAGCCTTCTCACTCAGTTG+AGG | + | chr1.1:10635445-10635464 | MS.gene31589:CDS | 55.0% | |
| GGGACATTGGATCAAGGTGC+TGG | + | chr1.1:10636368-10636387 | MS.gene31589:CDS | 55.0% | |
| TGAGGCAGCGAATTGAGGCA+AGG | + | chr1.1:10635619-10635638 | MS.gene31589:CDS | 55.0% | |
| TGCTCTGCGCATGAAAGAGC+AGG | + | chr1.1:10635368-10635387 | MS.gene31589:CDS | 55.0% | |
| CTTGCCTGAGAAGGTCGGTG+AGG | - | chr1.1:10635404-10635423 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 10635249 | 10636514 | 10635249 | ID=MS.gene31589 |
| chr1.1 | mRNA | 10635249 | 10636514 | 10635249 | ID=MS.gene31589.t1;Parent=MS.gene31589 |
| chr1.1 | exon | 10635249 | 10636514 | 10635249 | ID=MS.gene31589.t1.exon1;Parent=MS.gene31589.t1 |
| chr1.1 | CDS | 10635249 | 10636514 | 10635249 | ID=cds.MS.gene31589.t1;Parent=MS.gene31589.t1 |
| Gene Sequence |
| Protein sequence |
