Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33180.t1 | XP_013465806.1 | 97.6 | 709 | 16 | 1 | 1 | 709 | 1 | 708 | 0.00E+00 | 1265 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33180.t1 | F4IRM4 | 56.4 | 741 | 286 | 9 | 1 | 707 | 1 | 738 | 6.3e-219 | 761.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33180.t1 | A0A072VDJ0 | 97.6 | 709 | 16 | 1 | 1 | 709 | 1 | 708 | 0.0e+00 | 1265.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene33180 | 0.837592 | 4.75E-57 | -1.69E-46 |
| MS.gene04917 | MS.gene33180 | 0.841251 | 5.32E-58 | -1.69E-46 |
| MS.gene049283 | MS.gene33180 | 0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene33180 | -0.809181 | 2.15E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene33180 | 0.845263 | 4.53E-59 | -1.69E-46 |
| MS.gene04998 | MS.gene33180 | 0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene33180 | 0.813323 | 2.71E-51 | -1.69E-46 |
| MS.gene050361 | MS.gene33180 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene33180 | 0.830067 | 3.62E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene33180 | 0.804996 | 1.65E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene33180 | 0.877363 | 6.67E-69 | -1.69E-46 |
| MS.gene050737 | MS.gene33180 | 0.837801 | 4.20E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene33180 | 0.832662 | 8.32E-56 | -1.69E-46 |
| MS.gene050941 | MS.gene33180 | 0.872014 | 4.40E-67 | -1.69E-46 |
| MS.gene050962 | MS.gene33180 | 0.820595 | 6.31E-53 | -1.69E-46 |
| MS.gene051122 | MS.gene33180 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene051184 | MS.gene33180 | 0.84408 | 9.43E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene33180 | 0.856589 | 2.90E-62 | -1.69E-46 |
| MS.gene051831 | MS.gene33180 | 0.812714 | 3.69E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene33180 | 0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene33180 | 0.814012 | 1.91E-51 | -1.69E-46 |
| MS.gene052052 | MS.gene33180 | 0.811276 | 7.59E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene33180 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene33180 | 0.824055 | 9.93E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene33180 | 0.805591 | 1.24E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene33180 | 0.835987 | 1.22E-56 | -1.69E-46 |
| MS.gene052464 | MS.gene33180 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene33180 | 0.842065 | 3.25E-58 | -1.69E-46 |
| MS.gene052518 | MS.gene33180 | 0.804958 | 1.68E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene33180 | 0.85652 | 3.04E-62 | -1.69E-46 |
| MS.gene052675 | MS.gene33180 | 0.852467 | 4.53E-61 | -1.69E-46 |
| MS.gene052677 | MS.gene33180 | 0.847034 | 1.49E-59 | -1.69E-46 |
| MS.gene053456 | MS.gene33180 | 0.806555 | 7.77E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene33180 | 0.828517 | 8.60E-55 | -1.69E-46 |
| MS.gene053726 | MS.gene33180 | 0.847771 | 9.37E-60 | -1.69E-46 |
| MS.gene054479 | MS.gene33180 | 0.861406 | 1.05E-63 | -1.69E-46 |
| MS.gene054489 | MS.gene33180 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene054641 | MS.gene33180 | 0.818956 | 1.50E-52 | -1.69E-46 |
| MS.gene054772 | MS.gene33180 | 0.801786 | 7.64E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene33180 | 0.860691 | 1.73E-63 | -1.69E-46 |
| MS.gene054893 | MS.gene33180 | 0.867627 | 1.19E-65 | -1.69E-46 |
| MS.gene055327 | MS.gene33180 | 0.828339 | 9.50E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene33180 | 0.817558 | 3.10E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene33180 | 0.864732 | 9.84E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene33180 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene33180 | 0.811233 | 7.76E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene33180 | 0.80369 | 3.09E-49 | -1.69E-46 |
| MS.gene056285 | MS.gene33180 | 0.80292 | 4.46E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene33180 | 0.825709 | 4.04E-54 | -1.69E-46 |
| MS.gene056779 | MS.gene33180 | 0.822346 | 2.49E-53 | -1.69E-46 |
| MS.gene056831 | MS.gene33180 | 0.813343 | 2.69E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene33180 | 0.808094 | 3.67E-50 | -1.69E-46 |
| MS.gene057155 | MS.gene33180 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene33180 | 0.832973 | 6.96E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene33180 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene058223 | MS.gene33180 | -0.836427 | 9.42E-57 | -1.69E-46 |
| MS.gene058278 | MS.gene33180 | 0.842888 | 1.96E-58 | -1.69E-46 |
| MS.gene058429 | MS.gene33180 | 0.887103 | 1.91E-72 | -1.69E-46 |
| MS.gene058758 | MS.gene33180 | 0.82274 | 2.01E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene33180 | 0.831944 | 1.25E-55 | -1.69E-46 |
| MS.gene059283 | MS.gene33180 | 0.846397 | 2.23E-59 | -1.69E-46 |
| MS.gene05952 | MS.gene33180 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene33180 | 0.84212 | 3.14E-58 | -1.69E-46 |
| MS.gene060412 | MS.gene33180 | 0.802984 | 4.33E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene33180 | 0.828976 | 6.66E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene33180 | 0.865757 | 4.68E-65 | -1.69E-46 |
| MS.gene060777 | MS.gene33180 | 0.831806 | 1.35E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene33180 | 0.848276 | 6.79E-60 | -1.69E-46 |
| MS.gene060851 | MS.gene33180 | 0.854584 | 1.12E-61 | -1.69E-46 |
| MS.gene060852 | MS.gene33180 | 0.854435 | 1.23E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene33180 | 0.958196 | 4.28E-116 | -1.69E-46 |
| MS.gene061100 | MS.gene33180 | 0.816452 | 5.49E-52 | -1.69E-46 |
| MS.gene061205 | MS.gene33180 | 0.80049 | 1.41E-48 | -1.69E-46 |
| MS.gene06121 | MS.gene33180 | 0.856528 | 3.03E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042139 | MS.gene33180 | PPI |
| MS.gene68933 | MS.gene33180 | PPI |
| MS.gene68959 | MS.gene33180 | PPI |
| MS.gene012678 | MS.gene33180 | PPI |
| MS.gene33180 | MS.gene68877 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33180.t1 | MTR_1g012840 | 97.179 | 709 | 19 | 1 | 1 | 709 | 1 | 708 | 0.0 | 1429 |
| MS.gene33180.t1 | MTR_4g132780 | 36.207 | 754 | 371 | 14 | 1 | 659 | 1 | 739 | 3.35e-144 | 440 |
| MS.gene33180.t1 | MTR_2g025130 | 37.642 | 441 | 196 | 10 | 251 | 662 | 50 | 440 | 7.12e-89 | 286 |
| MS.gene33180.t1 | MTR_2g451540 | 57.377 | 183 | 73 | 3 | 6 | 185 | 2 | 182 | 1.84e-60 | 216 |
| MS.gene33180.t1 | MTR_7g059150 | 31.646 | 158 | 93 | 5 | 7 | 152 | 52 | 206 | 5.81e-16 | 79.0 |
| MS.gene33180.t1 | MTR_2g090135 | 33.913 | 115 | 70 | 4 | 41 | 152 | 98 | 209 | 7.77e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33180.t1 | AT2G25290 | 59.164 | 742 | 264 | 15 | 1 | 707 | 1 | 738 | 0.0 | 832 |
| MS.gene33180.t1 | AT2G25290 | 59.164 | 742 | 264 | 15 | 1 | 707 | 1 | 738 | 0.0 | 832 |
| MS.gene33180.t1 | AT2G25290 | 59.164 | 742 | 264 | 15 | 1 | 707 | 1 | 738 | 0.0 | 832 |
| MS.gene33180.t1 | AT2G25290 | 59.164 | 742 | 264 | 15 | 1 | 707 | 1 | 738 | 0.0 | 832 |
| MS.gene33180.t1 | AT4G32070 | 55.357 | 784 | 264 | 18 | 1 | 707 | 1 | 775 | 0.0 | 808 |
| MS.gene33180.t1 | AT4G32070 | 55.357 | 784 | 264 | 18 | 1 | 707 | 1 | 775 | 0.0 | 808 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 33 | 711 | 1.25e-163 | 488 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 33 | 711 | 1.25e-163 | 488 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 63 | 741 | 2.54e-163 | 489 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 63 | 741 | 2.54e-163 | 489 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 113 | 791 | 1.67e-162 | 488 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 123 | 801 | 2.83e-162 | 488 |
| MS.gene33180.t1 | AT5G20360 | 39.623 | 689 | 385 | 13 | 38 | 705 | 123 | 801 | 2.83e-162 | 488 |
| MS.gene33180.t1 | AT1G62390 | 37.464 | 702 | 366 | 10 | 31 | 662 | 41 | 739 | 1.55e-145 | 443 |
| MS.gene33180.t1 | AT3G58620 | 36.885 | 122 | 70 | 3 | 45 | 166 | 453 | 567 | 4.16e-12 | 70.1 |
| MS.gene33180.t1 | AT3G58620 | 36.885 | 122 | 70 | 3 | 45 | 166 | 453 | 567 | 4.69e-12 | 69.7 |
| MS.gene33180.t1 | AT4G30480 | 34.532 | 139 | 78 | 4 | 41 | 169 | 105 | 240 | 1.08e-11 | 66.6 |
Find 184 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTGGCTTTGTTTAAT+TGG | 0.077180 | 1.2:+8822102 | MS.gene33180:CDS |
| TGCTTTGGCTTTGTTTAATT+GGG | 0.159575 | 1.2:+8822103 | MS.gene33180:CDS |
| TAATGCACAGTTAGAGAAAA+TGG | 0.163980 | 1.2:+8822505 | MS.gene33180:CDS |
| TTCTTGTTGTTGTTTGATTT+TGG | 0.181726 | 1.2:-8820826 | None:intergenic |
| GGCGTTGAATCGGTTGGATT+TGG | 0.260217 | 1.2:+8821167 | MS.gene33180:CDS |
| GGATAGGTATCCGGGGTTAA+AGG | 0.285842 | 1.2:+8821662 | MS.gene33180:CDS |
| CGCGGTTTAGGAAAGTTGTT+AGG | 0.290109 | 1.2:+8821349 | MS.gene33180:CDS |
| ACAATAAGGTGCCCCATAAA+AGG | 0.298701 | 1.2:-8822604 | None:intergenic |
| GCAGAGGACAGCATGGAAAA+AGG | 0.303320 | 1.2:+8822419 | MS.gene33180:CDS |
| GTATATTACGCAGGTGGATT+TGG | 0.326290 | 1.2:+8821791 | MS.gene33180:CDS |
| GTTTGATTCTGATTCGTATC+TGG | 0.333235 | 1.2:+8821968 | MS.gene33180:CDS |
| ATAAGGGTGTTGGGGCTAAT+AGG | 0.333240 | 1.2:+8821886 | MS.gene33180:CDS |
| TACGCAGGTGGATTTGGATA+TGG | 0.341945 | 1.2:+8821797 | MS.gene33180:CDS |
| GTGAGGTGAGAGGGGAGAAT+GGG | 0.343540 | 1.2:+8821850 | MS.gene33180:CDS |
| GGGGAATGTTCACTTGTCTA+AGG | 0.350249 | 1.2:+8822124 | MS.gene33180:CDS |
| TGATAGTTTGAGGATTACTA+TGG | 0.351621 | 1.2:+8821254 | MS.gene33180:CDS |
| TAAGGATAGGGAAGGTGATT+TGG | 0.357323 | 1.2:+8821701 | MS.gene33180:CDS |
| AGCCGCCTGCTGCGCGGTTT+AGG | 0.357668 | 1.2:+8821337 | MS.gene33180:CDS |
| GTTTCAAGAGATGGCTGCTT+TGG | 0.361028 | 1.2:+8822088 | MS.gene33180:CDS |
| TCCAACGCAGTTGAATTATT+CGG | 0.366515 | 1.2:-8821225 | None:intergenic |
| TATTAGATGGGCGCAGTTGC+CGG | 0.370574 | 1.2:+8821602 | MS.gene33180:CDS |
| GGGTGTTCTTGTGAAGTATA+AGG | 0.372992 | 1.2:+8821683 | MS.gene33180:CDS |
| ACCAACATGGGAGGAATGTT+TGG | 0.374580 | 1.2:+8822661 | MS.gene33180:CDS |
| GGCCATGTGTTATATGCAAT+TGG | 0.379545 | 1.2:+8821044 | MS.gene33180:CDS |
| AAGAAGAAGAAAGGGCATAA+AGG | 0.384960 | 1.2:+8821384 | MS.gene33180:CDS |
| TTCTGAAGAAGCTGAAGATC+AGG | 0.386284 | 1.2:+8822556 | MS.gene33180:CDS |
| AGGACTGTGAAGTTGATATA+TGG | 0.388536 | 1.2:+8821573 | MS.gene33180:CDS |
| GGATAGTAACGAAGTTGTTA+AGG | 0.389904 | 1.2:+8821533 | MS.gene33180:CDS |
| GGCTGTTTAAGAACCATGTT+GGG | 0.393596 | 1.2:+8821946 | MS.gene33180:CDS |
| TATATGGAGAGGATATTAGA+TGG | 0.397585 | 1.2:+8821589 | MS.gene33180:CDS |
| ATGGGCTACGAAGGAGTATA+AGG | 0.401726 | 1.2:+8822220 | MS.gene33180:CDS |
| AAGATTAATAAGAAGAAGAA+AGG | 0.408833 | 1.2:+8821375 | MS.gene33180:CDS |
| GAGAAGGAGATAAGGGTGTT+GGG | 0.411879 | 1.2:+8821877 | MS.gene33180:CDS |
| TGAGTAGTGGTGAGGTGAGA+GGG | 0.413021 | 1.2:+8821841 | MS.gene33180:CDS |
| TACGAGGGACTCCTAGCTCT+TGG | 0.413739 | 1.2:+8822290 | MS.gene33180:CDS |
| TGATGAGACTGAGATTGCTT+TGG | 0.414076 | 1.2:+8821296 | MS.gene33180:CDS |
| AACAGAACGCTCATACAATA+AGG | 0.415328 | 1.2:-8822618 | None:intergenic |
| GGTGAGGTGAGAGGGGAGAA+TGG | 0.419918 | 1.2:+8821849 | MS.gene33180:CDS |
| GTGAGAGGGGAGAATGGGGT+TGG | 0.422494 | 1.2:+8821855 | MS.gene33180:CDS |
| ATTGAGGAACAGCGTTTGAA+TGG | 0.424825 | 1.2:+8822461 | MS.gene33180:CDS |
| GGGGAGAATGGGGTTGGAGA+AGG | 0.425637 | 1.2:+8821861 | MS.gene33180:CDS |
| AAATGTTAATGTTAATGTTA+AGG | 0.428883 | 1.2:+8821467 | MS.gene33180:CDS |
| TGGAGATTCTTGATAGTTTG+AGG | 0.428936 | 1.2:+8821244 | MS.gene33180:CDS |
| AGCTGCAGAACCTCCTCAAA+AGG | 0.429826 | 1.2:-8822386 | None:intergenic |
| TGTGATAAGGGATAGGTATC+CGG | 0.440872 | 1.2:+8821653 | MS.gene33180:CDS |
| AAAATTGTTCCAGGATGTAA+TGG | 0.443210 | 1.2:-8822993 | None:intergenic |
| GAAGGATAAGGTTACGGATA+AGG | 0.446110 | 1.2:+8821506 | MS.gene33180:CDS |
| CTCGACCCGTCTTCCTGAAA+AGG | 0.446613 | 1.2:-8822161 | None:intergenic |
| ATCTGGATATTCATGAGGTT+GGG | 0.451158 | 1.2:+8821985 | MS.gene33180:CDS |
| GGTTGGGATGAAGATATATT+CGG | 0.451414 | 1.2:+8822001 | MS.gene33180:CDS |
| TGGGGTTGGAGAAGGAGATA+AGG | 0.452188 | 1.2:+8821869 | MS.gene33180:CDS |
| TGTTATATGCAATTGGGTCT+TGG | 0.453077 | 1.2:+8821051 | MS.gene33180:CDS |
| GTGATAAGGGATAGGTATCC+GGG | 0.453408 | 1.2:+8821654 | MS.gene33180:CDS |
| AGGATTACTATGGAGGAGAA+AGG | 0.457524 | 1.2:+8821264 | MS.gene33180:CDS |
| AACATTAACATTTCCAACAT+TGG | 0.459292 | 1.2:-8821457 | None:intergenic |
| AACAATAAGAATATCGAAGT+TGG | 0.461398 | 1.2:+8822362 | MS.gene33180:CDS |
| ACGAGGGACTCCTAGCTCTT+GGG | 0.465698 | 1.2:+8822291 | MS.gene33180:CDS |
| GCTGAGGGTTGTCATGTGCT+TGG | 0.466822 | 1.2:+8821756 | MS.gene33180:CDS |
| GGGTGAAGATTCGAAGGATA+AGG | 0.466903 | 1.2:+8821494 | MS.gene33180:CDS |
| GCTTTGGCTTTGTTTAATTG+GGG | 0.471043 | 1.2:+8822104 | MS.gene33180:CDS |
| TATCTGGATATTCATGAGGT+TGG | 0.472474 | 1.2:+8821984 | MS.gene33180:CDS |
| GTTGGTGAGAGATGTGATAA+GGG | 0.473972 | 1.2:+8821641 | MS.gene33180:CDS |
| GTCATGTGCTTGGTTCGATC+CGG | 0.477175 | 1.2:+8821766 | MS.gene33180:CDS |
| GATAGGTATCCGGGGTTAAA+GGG | 0.478058 | 1.2:+8821663 | MS.gene33180:CDS |
| AGATTAATAAGAAGAAGAAA+GGG | 0.479602 | 1.2:+8821376 | MS.gene33180:CDS |
| AGATCGATGGGGAAACCAGC+TGG | 0.483060 | 1.2:+8820781 | None:intergenic |
| GGGGTTGGAGAAGGAGATAA+GGG | 0.485908 | 1.2:+8821870 | MS.gene33180:CDS |
| AATGCACAGTTAGAGAAAAT+GGG | 0.486916 | 1.2:+8822506 | MS.gene33180:CDS |
| GGAGAAGGAGATAAGGGTGT+TGG | 0.487702 | 1.2:+8821876 | MS.gene33180:CDS |
| TTGAGCAAGCAAAGCTATGC+TGG | 0.490157 | 1.2:+8822324 | MS.gene33180:CDS |
| CCACCTGCGTAATATACAAC+CGG | 0.493909 | 1.2:-8821785 | None:intergenic |
| GAGTAGTGGTGAGGTGAGAG+GGG | 0.494532 | 1.2:+8821842 | MS.gene33180:CDS |
| AGTGTTACGAGGCGTTGAAT+CGG | 0.494656 | 1.2:+8821157 | MS.gene33180:CDS |
| TCACAAGAATTAAGAGAAGA+AGG | 0.494937 | 1.2:+8820907 | MS.gene33180:CDS |
| ATGTTAAAGCTGGATATGAA+TGG | 0.495987 | 1.2:+8822201 | MS.gene33180:CDS |
| TAAGGTTACGGATAAGGATA+AGG | 0.497434 | 1.2:+8821512 | MS.gene33180:CDS |
| AGTTGGTGAGAGATGTGATA+AGG | 0.498390 | 1.2:+8821640 | MS.gene33180:CDS |
| TCCAGGATGTAATGGAGTCT+TGG | 0.500662 | 1.2:-8822985 | None:intergenic |
| TTCTGAGTTGAGGTTAGCTG+AGG | 0.503420 | 1.2:+8821740 | MS.gene33180:CDS |
| GAGAAGAAAGCCACCAATGT+TGG | 0.504400 | 1.2:+8821444 | MS.gene33180:CDS |
| CTTTGGCTTTGTTTAATTGG+GGG | 0.508071 | 1.2:+8822105 | MS.gene33180:CDS |
| ATGAGTAGTGGTGAGGTGAG+AGG | 0.509195 | 1.2:+8821840 | MS.gene33180:CDS |
| GTTGATGTGGGAGGAGATTG+AGG | 0.511356 | 1.2:+8822445 | MS.gene33180:CDS |
| GGATTACTATGGAGGAGAAA+GGG | 0.511446 | 1.2:+8821265 | MS.gene33180:CDS |
| TTACGAGGCGTTGAATCGGT+TGG | 0.511704 | 1.2:+8821161 | MS.gene33180:CDS |
| TGTTAAAGCTGGATATGAAT+GGG | 0.512823 | 1.2:+8822202 | MS.gene33180:CDS |
| GAAGATATATTCGGAGGCGA+TGG | 0.514826 | 1.2:+8822010 | MS.gene33180:CDS |
| AGGAAGATAAAGCGGTTACT+AGG | 0.515733 | 1.2:+8821553 | MS.gene33180:CDS |
| TCTGTTGTGGAATTTAAGCT+AGG | 0.515915 | 1.2:+8822635 | MS.gene33180:CDS |
| GACTCGAACCATTGTTTCGT+CGG | 0.516704 | 1.2:+8822956 | MS.gene33180:CDS |
| AATGTCAGTTGTAGAAGCTC+CGG | 0.523785 | 1.2:-8822711 | None:intergenic |
| AGGCTGTTTAAGAACCATGT+TGG | 0.526266 | 1.2:+8821945 | MS.gene33180:CDS |
| GCCGAATAATTCAACTGCGT+TGG | 0.526616 | 1.2:+8821224 | MS.gene33180:CDS |
| AATGGTTCGAGTCGGAAAGT+TGG | 0.527329 | 1.2:-8822946 | None:intergenic |
| TCTCTCGAGCATGTTAAAGC+TGG | 0.529882 | 1.2:+8822191 | MS.gene33180:CDS |
| TGCGGATAAGTTTCAAGAGA+TGG | 0.533330 | 1.2:+8822079 | MS.gene33180:CDS |
| GCGGTTTAGGAAAGTTGTTA+GGG | 0.534543 | 1.2:+8821350 | MS.gene33180:CDS |
| AGATTCGAAGGATAAGGTTA+CGG | 0.534915 | 1.2:+8821500 | MS.gene33180:CDS |
| ACTTTCCTAAACCGCGCAGC+AGG | 0.535349 | 1.2:-8821342 | None:intergenic |
| TAGTTTGAGGATTACTATGG+AGG | 0.535558 | 1.2:+8821257 | MS.gene33180:CDS |
| GTTGAAAAGTTTGAACTAGC+CGG | 0.537285 | 1.2:+8822692 | MS.gene33180:CDS |
| AGGAGTCCCTCGTAGAAGTC+CGG | 0.537617 | 1.2:-8822281 | None:intergenic |
| TGAGAGATGTGATAAGGGAT+AGG | 0.541480 | 1.2:+8821646 | MS.gene33180:CDS |
| GCATGGAATGAGATGTATGA+TGG | 0.545970 | 1.2:+8822907 | MS.gene33180:CDS |
| TTGCTGTTTCATTAGAACAA+TGG | 0.546528 | 1.2:-8822751 | None:intergenic |
| AGAATCTGTGAAAATCAAAC+CGG | 0.549691 | 1.2:+8822262 | MS.gene33180:CDS |
| ATTAACATTTCCAACATTGG+TGG | 0.550948 | 1.2:-8821454 | None:intergenic |
| TCTGAGTTGAGGTTAGCTGA+GGG | 0.552191 | 1.2:+8821741 | MS.gene33180:CDS |
| GATATATTCGGAGGCGATGG+AGG | 0.553793 | 1.2:+8822013 | MS.gene33180:CDS |
| GGATGATTACTGTGGAGGAA+TGG | 0.555855 | 1.2:+8821907 | MS.gene33180:CDS |
| GGTGAAGGGTGAAGATTCGA+AGG | 0.556597 | 1.2:+8821488 | MS.gene33180:CDS |
| TTCTTGTGAAGTATAAGGAT+AGG | 0.556963 | 1.2:+8821688 | MS.gene33180:CDS |
| TCGATGACATAGTGCAAGCA+TGG | 0.557013 | 1.2:+8822890 | MS.gene33180:CDS |
| GCCATGTGTTATATGCAATT+GGG | 0.559073 | 1.2:+8821045 | MS.gene33180:CDS |
| ATTCAACGCCTCGTAACACT+TGG | 0.561428 | 1.2:-8821154 | None:intergenic |
| GCTGCAGAACCTCCTCAAAA+GGG | 0.561685 | 1.2:-8822385 | None:intergenic |
| AAGTAGAGCCGCCTGCTGCG+CGG | 0.563860 | 1.2:+8821331 | MS.gene33180:CDS |
| ACAAGAACACCCTTTAACCC+CGG | 0.566730 | 1.2:-8821672 | None:intergenic |
| TGAGGTGAGAGGGGAGAATG+GGG | 0.567723 | 1.2:+8821851 | MS.gene33180:CDS |
| TCTTGTGAAGTATAAGGATA+GGG | 0.568474 | 1.2:+8821689 | MS.gene33180:CDS |
| AATGTTAATGTTAAGGTGAA+GGG | 0.568909 | 1.2:+8821474 | MS.gene33180:CDS |
| GGAACACGCCGACGAAACAA+TGG | 0.570618 | 1.2:-8822964 | None:intergenic |
| AACATGGGAGGAATGTTTGG+AGG | 0.573058 | 1.2:+8822664 | MS.gene33180:CDS |
| CATATAACACATGGCCATGT+TGG | 0.573374 | 1.2:-8821037 | None:intergenic |
| AAGAAAGGGCATAAAGGAGA+AGG | 0.575305 | 1.2:+8821390 | MS.gene33180:CDS |
| ACTGTTGATACCCAAGAGCT+AGG | 0.576141 | 1.2:-8822301 | None:intergenic |
| AAGGAGAAGGCGAGGAAGAG+CGG | 0.579153 | 1.2:+8821403 | MS.gene33180:CDS |
| TCCAAGACTCCATTACATCC+TGG | 0.582606 | 1.2:+8822984 | MS.gene33180:CDS |
| TTACTACTACTTCTGAGTTG+AGG | 0.582702 | 1.2:+8821730 | MS.gene33180:CDS |
| GAGGATTCAGTGACGAATGA+TGG | 0.587808 | 1.2:+8822032 | MS.gene33180:CDS |
| TAATGTTAATGTTAAGGTGA+AGG | 0.589069 | 1.2:+8821473 | MS.gene33180:CDS |
| AATGGCTTGTTCAGTTTGCG+AGG | 0.590314 | 1.2:+8821925 | MS.gene33180:CDS |
| TCCAAACATTCCTCCCATGT+TGG | 0.593550 | 1.2:-8822662 | None:intergenic |
| TTAGAGAAAATGGGTTTGCA+CGG | 0.595862 | 1.2:+8822515 | MS.gene33180:CDS |
| AGAAGGAGATAAGGGTGTTG+GGG | 0.600333 | 1.2:+8821878 | MS.gene33180:CDS |
| TTCCTAAACCGCGCAGCAGG+CGG | 0.600423 | 1.2:-8821339 | None:intergenic |
| ATATGGAGAGGATATTAGAT+GGG | 0.603947 | 1.2:+8821590 | MS.gene33180:CDS |
| TAATAGGATGATTACTGTGG+AGG | 0.608454 | 1.2:+8821902 | MS.gene33180:CDS |
| TTGCACTCGTTAATCGCTCG+AGG | 0.610141 | 1.2:-8821081 | None:intergenic |
| TGGATATGAATGGGCTACGA+AGG | 0.610634 | 1.2:+8822211 | MS.gene33180:CDS |
| TAACAAGGCAGAGGACAGCA+TGG | 0.611758 | 1.2:+8822412 | MS.gene33180:CDS |
| GGTGAATTGTAGTATGAAGT+TGG | 0.612990 | 1.2:+8821623 | MS.gene33180:CDS |
| AGAAGAGCTTTACTATACCT+CGG | 0.613368 | 1.2:-8821123 | None:intergenic |
| ATCAAACCGGACTTCTACGA+GGG | 0.616046 | 1.2:+8822275 | MS.gene33180:CDS |
| ATTGTATGAGCGTTCTGTTG+TGG | 0.617025 | 1.2:+8822622 | MS.gene33180:CDS |
| AACTTCATACTACAATTCAC+CGG | 0.617885 | 1.2:-8821621 | None:intergenic |
| GGTTCTGCAGCTCTATAACA+AGG | 0.619781 | 1.2:+8822397 | MS.gene33180:CDS |
| AAAAGGGATGTTGATGTGGG+AGG | 0.621444 | 1.2:+8822436 | MS.gene33180:CDS |
| TTGTTCTAATGAAACAGCAA+TGG | 0.622294 | 1.2:+8822754 | MS.gene33180:CDS |
| AGGGCATAAAGGAGAAGGCG+AGG | 0.623032 | 1.2:+8821395 | MS.gene33180:CDS |
| CCGGTTGTATATTACGCAGG+TGG | 0.623338 | 1.2:+8821785 | MS.gene33180:CDS |
| TTCGTATCTGGATATTCATG+AGG | 0.624473 | 1.2:+8821980 | MS.gene33180:CDS |
| TCTAATGAAACAGCAATGGA+AGG | 0.625596 | 1.2:+8822758 | MS.gene33180:CDS |
| AATCAGAATCAAACCCAACA+TGG | 0.625835 | 1.2:-8821959 | None:intergenic |
| AGTTGTTAAGGAAGATAAAG+CGG | 0.626540 | 1.2:+8821545 | MS.gene33180:CDS |
| GTGAAGTATAAGGATAGGGA+AGG | 0.628310 | 1.2:+8821693 | MS.gene33180:CDS |
| TTAAGCTAGGACTACCAACA+TGG | 0.632474 | 1.2:+8822648 | MS.gene33180:CDS |
| GCAGCTCTATAACAAGGCAG+AGG | 0.632813 | 1.2:+8822403 | MS.gene33180:CDS |
| AAGATCAGGCTTCAAAGATG+AGG | 0.634249 | 1.2:+8822570 | MS.gene33180:CDS |
| GATCCGGTTGTATATTACGC+AGG | 0.635696 | 1.2:+8821782 | MS.gene33180:CDS |
| TGCACATCTTCACACCAACA+TGG | 0.638664 | 1.2:+8821023 | MS.gene33180:CDS |
| TTGTGACATGTTGATGAACA+TGG | 0.639131 | 1.2:-8820890 | None:intergenic |
| TCAAACAACAACAAGAACAA+AGG | 0.642821 | 1.2:+8820832 | MS.gene33180:CDS |
| TGTGAAGTTGATATATGGAG+AGG | 0.643074 | 1.2:+8821578 | MS.gene33180:CDS |
| GACGAAACAATGGTTCGAGT+CGG | 0.643395 | 1.2:-8822954 | None:intergenic |
| AGAGCTGTTTGATATTGCTG+CGG | 0.643756 | 1.2:+8822061 | MS.gene33180:CDS |
| TAGAAGAGCCAAGTGTTACG+AGG | 0.646607 | 1.2:+8821146 | MS.gene33180:CDS |
| TGCACTCGTTAATCGCTCGA+GGG | 0.647015 | 1.2:-8821080 | None:intergenic |
| GGAGCTTCTACAACTGACAT+TGG | 0.653645 | 1.2:+8822713 | MS.gene33180:CDS |
| ATGTTCACTTGTCTAAGGCG+AGG | 0.655166 | 1.2:+8822129 | MS.gene33180:CDS |
| CATGGAATGAGATGTATGAT+GGG | 0.662583 | 1.2:+8822908 | MS.gene33180:CDS |
| ACCCAATTGCATATAACACA+TGG | 0.669146 | 1.2:-8821046 | None:intergenic |
| TATGATGAAAAGATGAGTAG+TGG | 0.669294 | 1.2:+8821828 | MS.gene33180:CDS |
| TGATAAGGGATAGGTATCCG+GGG | 0.671748 | 1.2:+8821655 | MS.gene33180:CDS |
| TAAGCTAGGACTACCAACAT+GGG | 0.675321 | 1.2:+8822649 | MS.gene33180:CDS |
| TTCACTTGTCTAAGGCGAGG+AGG | 0.676418 | 1.2:+8822132 | MS.gene33180:CDS |
| TTGCTCTGCAAGTTTCGCCG+AGG | 0.682933 | 1.2:+8821106 | MS.gene33180:CDS |
| TGGGATGAAGATATATTCGG+AGG | 0.690271 | 1.2:+8822004 | MS.gene33180:CDS |
| TGAAAAGATGAGTAGTGGTG+AGG | 0.697497 | 1.2:+8821833 | MS.gene33180:CDS |
| GGCTAATAGGATGATTACTG+TGG | 0.700839 | 1.2:+8821899 | MS.gene33180:CDS |
| AATCAAACCGGACTTCTACG+AGG | 0.700981 | 1.2:+8822274 | MS.gene33180:CDS |
| GAAGATGTGCAACATCTATG+TGG | 0.701400 | 1.2:-8821011 | None:intergenic |
| GCTAGGACTACCAACATGGG+AGG | 0.703040 | 1.2:+8822652 | MS.gene33180:CDS |
| GGAATGAGATGTATGATGGG+TGG | 0.713527 | 1.2:+8822911 | MS.gene33180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATATTTGAAACATAAA+AGG | - | chr1.2:8822829-8822848 | None:intergenic | 10.0% |
| !!! | TTTATGTTTCAAATATTTTA+GGG | + | chr1.2:8822829-8822848 | MS.gene33180:intron | 10.0% |
| !!! | TTTTATGTTTCAAATATTTT+AGG | + | chr1.2:8822828-8822847 | MS.gene33180:intron | 10.0% |
| !! | AAATGTTAATGTTAATGTTA+AGG | + | chr1.2:8821467-8821486 | MS.gene33180:CDS | 15.0% |
| !! | AAGATTAATAAGAAGAAGAA+AGG | + | chr1.2:8821375-8821394 | MS.gene33180:CDS | 20.0% |
| !! | AGATTAATAAGAAGAAGAAA+GGG | + | chr1.2:8821376-8821395 | MS.gene33180:CDS | 20.0% |
| ! | AACAATAAGAATATCGAAGT+TGG | + | chr1.2:8822362-8822381 | MS.gene33180:CDS | 25.0% |
| ! | AACATTAACATTTCCAACAT+TGG | - | chr1.2:8821460-8821479 | None:intergenic | 25.0% |
| ! | AATGTTAATGTTAAGGTGAA+GGG | + | chr1.2:8821474-8821493 | MS.gene33180:CDS | 25.0% |
| ! | TAATGTTAATGTTAAGGTGA+AGG | + | chr1.2:8821473-8821492 | MS.gene33180:CDS | 25.0% |
| !! | ATACAGATATACCTTTTATG+GGG | + | chr1.2:8822593-8822612 | MS.gene33180:CDS | 25.0% |
| !! | GATACAGATATACCTTTTAT+GGG | + | chr1.2:8822592-8822611 | MS.gene33180:CDS | 25.0% |
| !!! | TTCTTGTTGTTGTTTGATTT+TGG | - | chr1.2:8820829-8820848 | None:intergenic | 25.0% |
| AAAATTGTTCCAGGATGTAA+TGG | - | chr1.2:8822996-8823015 | None:intergenic | 30.0% | |
| AACTTCATACTACAATTCAC+CGG | - | chr1.2:8821624-8821643 | None:intergenic | 30.0% | |
| AATGCACAGTTAGAGAAAAT+GGG | + | chr1.2:8822506-8822525 | MS.gene33180:CDS | 30.0% | |
| AGAATCTGTGAAAATCAAAC+CGG | + | chr1.2:8822262-8822281 | MS.gene33180:CDS | 30.0% | |
| AGTTGTTAAGGAAGATAAAG+CGG | + | chr1.2:8821545-8821564 | MS.gene33180:CDS | 30.0% | |
| ATATGGAGAGGATATTAGAT+GGG | + | chr1.2:8821590-8821609 | MS.gene33180:CDS | 30.0% | |
| ATGTTAAAGCTGGATATGAA+TGG | + | chr1.2:8822201-8822220 | MS.gene33180:CDS | 30.0% | |
| ATTAACATTTCCAACATTGG+TGG | - | chr1.2:8821457-8821476 | None:intergenic | 30.0% | |
| TAATGCACAGTTAGAGAAAA+TGG | + | chr1.2:8822505-8822524 | MS.gene33180:CDS | 30.0% | |
| TATATGGAGAGGATATTAGA+TGG | + | chr1.2:8821589-8821608 | MS.gene33180:CDS | 30.0% | |
| TATGATGAAAAGATGAGTAG+TGG | + | chr1.2:8821828-8821847 | MS.gene33180:CDS | 30.0% | |
| TCAAACAACAACAAGAACAA+AGG | + | chr1.2:8820832-8820851 | MS.gene33180:CDS | 30.0% | |
| TCACAAGAATTAAGAGAAGA+AGG | + | chr1.2:8820907-8820926 | MS.gene33180:CDS | 30.0% | |
| TCTTGTGAAGTATAAGGATA+GGG | + | chr1.2:8821689-8821708 | MS.gene33180:CDS | 30.0% | |
| TGATAGTTTGAGGATTACTA+TGG | + | chr1.2:8821254-8821273 | MS.gene33180:CDS | 30.0% | |
| TGTTAAAGCTGGATATGAAT+GGG | + | chr1.2:8822202-8822221 | MS.gene33180:CDS | 30.0% | |
| TTCCAAAAAAAAGACAACGA+AGG | + | chr1.2:8820943-8820962 | MS.gene33180:CDS | 30.0% | |
| TTCTTGTGAAGTATAAGGAT+AGG | + | chr1.2:8821688-8821707 | MS.gene33180:CDS | 30.0% | |
| TTGTTCTAATGAAACAGCAA+TGG | + | chr1.2:8822754-8822773 | MS.gene33180:CDS | 30.0% | |
| ! | CTCATCTTTTCATCATAACA+CGG | - | chr1.2:8821825-8821844 | None:intergenic | 30.0% |
| ! | GGATACAGATATACCTTTTA+TGG | + | chr1.2:8822591-8822610 | MS.gene33180:CDS | 30.0% |
| !! | AAACCACTTTTCATGATTAC+AGG | + | chr1.2:8822859-8822878 | MS.gene33180:intron | 30.0% |
| !! | AACCACTTTTCATGATTACA+GGG | + | chr1.2:8822860-8822879 | MS.gene33180:intron | 30.0% |
| !! | TGCTTTGGCTTTGTTTAATT+GGG | + | chr1.2:8822103-8822122 | MS.gene33180:CDS | 30.0% |
| !! | TTGCTGTTTCATTAGAACAA+TGG | - | chr1.2:8822754-8822773 | None:intergenic | 30.0% |
| AACAGAACGCTCATACAATA+AGG | - | chr1.2:8822621-8822640 | None:intergenic | 35.0% | |
| AACCCTGTAATCATGAAAAG+TGG | - | chr1.2:8822865-8822884 | None:intergenic | 35.0% | |
| AATCAGAATCAAACCCAACA+TGG | - | chr1.2:8821962-8821981 | None:intergenic | 35.0% | |
| ACCCAATTGCATATAACACA+TGG | - | chr1.2:8821049-8821068 | None:intergenic | 35.0% | |
| AGAAGAGCTTTACTATACCT+CGG | - | chr1.2:8821126-8821145 | None:intergenic | 35.0% | |
| AGATTCGAAGGATAAGGTTA+CGG | + | chr1.2:8821500-8821519 | MS.gene33180:CDS | 35.0% | |
| ATCTGGATATTCATGAGGTT+GGG | + | chr1.2:8821985-8822004 | MS.gene33180:CDS | 35.0% | |
| CATGGAATGAGATGTATGAT+GGG | + | chr1.2:8822908-8822927 | MS.gene33180:CDS | 35.0% | |
| GCCATGTGTTATATGCAATT+GGG | + | chr1.2:8821045-8821064 | MS.gene33180:CDS | 35.0% | |
| GGATAGTAACGAAGTTGTTA+AGG | + | chr1.2:8821533-8821552 | MS.gene33180:CDS | 35.0% | |
| GGTGAATTGTAGTATGAAGT+TGG | + | chr1.2:8821623-8821642 | MS.gene33180:CDS | 35.0% | |
| GGTTGGGATGAAGATATATT+CGG | + | chr1.2:8822001-8822020 | MS.gene33180:CDS | 35.0% | |
| GTTGAAAAGTTTGAACTAGC+CGG | + | chr1.2:8822692-8822711 | MS.gene33180:CDS | 35.0% | |
| TAAGGTTACGGATAAGGATA+AGG | + | chr1.2:8821512-8821531 | MS.gene33180:CDS | 35.0% | |
| TAATAGGATGATTACTGTGG+AGG | + | chr1.2:8821902-8821921 | MS.gene33180:CDS | 35.0% | |
| TAGTTTGAGGATTACTATGG+AGG | + | chr1.2:8821257-8821276 | MS.gene33180:CDS | 35.0% | |
| TATCTGGATATTCATGAGGT+TGG | + | chr1.2:8821984-8822003 | MS.gene33180:CDS | 35.0% | |
| TCCAACGCAGTTGAATTATT+CGG | - | chr1.2:8821228-8821247 | None:intergenic | 35.0% | |
| TCTAATGAAACAGCAATGGA+AGG | + | chr1.2:8822758-8822777 | MS.gene33180:CDS | 35.0% | |
| TCTGTTGTGGAATTTAAGCT+AGG | + | chr1.2:8822635-8822654 | MS.gene33180:CDS | 35.0% | |
| TGTTATATGCAATTGGGTCT+TGG | + | chr1.2:8821051-8821070 | MS.gene33180:CDS | 35.0% | |
| TTACTACTACTTCTGAGTTG+AGG | + | chr1.2:8821730-8821749 | MS.gene33180:CDS | 35.0% | |
| TTCGTATCTGGATATTCATG+AGG | + | chr1.2:8821980-8821999 | MS.gene33180:CDS | 35.0% | |
| ! | AAGAAGAAGAAAGGGCATAA+AGG | + | chr1.2:8821384-8821403 | MS.gene33180:CDS | 35.0% |
| ! | GCAACATCTATGTGGTTTTT+GGG | - | chr1.2:8821006-8821025 | None:intergenic | 35.0% |
| ! | GTTTGATTCTGATTCGTATC+TGG | + | chr1.2:8821968-8821987 | MS.gene33180:CDS | 35.0% |
| ! | TGCAACATCTATGTGGTTTT+TGG | - | chr1.2:8821007-8821026 | None:intergenic | 35.0% |
| ! | TGGAGATTCTTGATAGTTTG+AGG | + | chr1.2:8821244-8821263 | MS.gene33180:CDS | 35.0% |
| ! | TTAGAGAAAATGGGTTTGCA+CGG | + | chr1.2:8822515-8822534 | MS.gene33180:CDS | 35.0% |
| ! | TTGTGACATGTTGATGAACA+TGG | - | chr1.2:8820893-8820912 | None:intergenic | 35.0% |
| !! | AGGACTGTGAAGTTGATATA+TGG | + | chr1.2:8821573-8821592 | MS.gene33180:CDS | 35.0% |
| !! | CTGCTTTGGCTTTGTTTAAT+TGG | + | chr1.2:8822102-8822121 | MS.gene33180:CDS | 35.0% |
| !! | CTTTGGCTTTGTTTAATTGG+GGG | + | chr1.2:8822105-8822124 | MS.gene33180:CDS | 35.0% |
| !! | GCTTTGGCTTTGTTTAATTG+GGG | + | chr1.2:8822104-8822123 | MS.gene33180:CDS | 35.0% |
| !! | TGTGAAGTTGATATATGGAG+AGG | + | chr1.2:8821578-8821597 | MS.gene33180:CDS | 35.0% |
| !!! | CTCCTTCGTTGTCTTTTTTT+TGG | - | chr1.2:8820948-8820967 | None:intergenic | 35.0% |
| !!! | GTTTTTGGGTAAGAGTTTGA+GGG | - | chr1.2:8820992-8821011 | None:intergenic | 35.0% |
| AAGATCAGGCTTCAAAGATG+AGG | + | chr1.2:8822570-8822589 | MS.gene33180:CDS | 40.0% | |
| AATGTCAGTTGTAGAAGCTC+CGG | - | chr1.2:8822714-8822733 | None:intergenic | 40.0% | |
| AGAGCTGTTTGATATTGCTG+CGG | + | chr1.2:8822061-8822080 | MS.gene33180:CDS | 40.0% | |
| AGGAAGATAAAGCGGTTACT+AGG | + | chr1.2:8821553-8821572 | MS.gene33180:CDS | 40.0% | |
| AGGATTACTATGGAGGAGAA+AGG | + | chr1.2:8821264-8821283 | MS.gene33180:CDS | 40.0% | |
| AGGCTGTTTAAGAACCATGT+TGG | + | chr1.2:8821945-8821964 | MS.gene33180:CDS | 40.0% | |
| ATTGAGGAACAGCGTTTGAA+TGG | + | chr1.2:8822461-8822480 | MS.gene33180:CDS | 40.0% | |
| ATTGTATGAGCGTTCTGTTG+TGG | + | chr1.2:8822622-8822641 | MS.gene33180:CDS | 40.0% | |
| CATATAACACATGGCCATGT+TGG | - | chr1.2:8821040-8821059 | None:intergenic | 40.0% | |
| GAAACCAGCTGGAAAAAAGA+AGG | + | chr1.2:8820792-8820811 | MS.gene33180:CDS | 40.0% | |
| GAAGATGTGCAACATCTATG+TGG | - | chr1.2:8821014-8821033 | None:intergenic | 40.0% | |
| GAAGGATAAGGTTACGGATA+AGG | + | chr1.2:8821506-8821525 | MS.gene33180:CDS | 40.0% | |
| GCATGGAATGAGATGTATGA+TGG | + | chr1.2:8822907-8822926 | MS.gene33180:CDS | 40.0% | |
| GCGGTTTAGGAAAGTTGTTA+GGG | + | chr1.2:8821350-8821369 | MS.gene33180:CDS | 40.0% | |
| GGAAAAAGGGATGTTGATGT+GGG | + | chr1.2:8822433-8822452 | MS.gene33180:CDS | 40.0% | |
| GGATTACTATGGAGGAGAAA+GGG | + | chr1.2:8821265-8821284 | MS.gene33180:CDS | 40.0% | |
| GGCCATGTGTTATATGCAAT+TGG | + | chr1.2:8821044-8821063 | MS.gene33180:CDS | 40.0% | |
| GGCTAATAGGATGATTACTG+TGG | + | chr1.2:8821899-8821918 | MS.gene33180:CDS | 40.0% | |
| GGCTGTTTAAGAACCATGTT+GGG | + | chr1.2:8821946-8821965 | MS.gene33180:CDS | 40.0% | |
| GGGTGTTCTTGTGAAGTATA+AGG | + | chr1.2:8821683-8821702 | MS.gene33180:CDS | 40.0% | |
| GTGAAGTATAAGGATAGGGA+AGG | + | chr1.2:8821693-8821712 | MS.gene33180:CDS | 40.0% | |
| TAAGCTAGGACTACCAACAT+GGG | + | chr1.2:8822649-8822668 | MS.gene33180:CDS | 40.0% | |
| TAAGGATAGGGAAGGTGATT+TGG | + | chr1.2:8821701-8821720 | MS.gene33180:CDS | 40.0% | |
| TGAAAAGATGAGTAGTGGTG+AGG | + | chr1.2:8821833-8821852 | MS.gene33180:CDS | 40.0% | |
| TGAAACAGCAATGGAAGGTA+CGG | + | chr1.2:8822763-8822782 | MS.gene33180:intron | 40.0% | |
| TGAGAGATGTGATAAGGGAT+AGG | + | chr1.2:8821646-8821665 | MS.gene33180:CDS | 40.0% | |
| TGATGAGACTGAGATTGCTT+TGG | + | chr1.2:8821296-8821315 | MS.gene33180:CDS | 40.0% | |
| TGCGGATAAGTTTCAAGAGA+TGG | + | chr1.2:8822079-8822098 | MS.gene33180:CDS | 40.0% | |
| TGGAAAAAGGGATGTTGATG+TGG | + | chr1.2:8822432-8822451 | MS.gene33180:CDS | 40.0% | |
| TGGGATGAAGATATATTCGG+AGG | + | chr1.2:8822004-8822023 | MS.gene33180:CDS | 40.0% | |
| TGTGATAAGGGATAGGTATC+CGG | + | chr1.2:8821653-8821672 | MS.gene33180:CDS | 40.0% | |
| TTAAGCTAGGACTACCAACA+TGG | + | chr1.2:8822648-8822667 | MS.gene33180:CDS | 40.0% | |
| ! | AAGAAAGGGCATAAAGGAGA+AGG | + | chr1.2:8821390-8821409 | MS.gene33180:CDS | 40.0% |
| ! | ACAATAAGGTGCCCCATAAA+AGG | - | chr1.2:8822607-8822626 | None:intergenic | 40.0% |
| ! | GTATATTACGCAGGTGGATT+TGG | + | chr1.2:8821791-8821810 | MS.gene33180:CDS | 40.0% |
| ! | GTTGGTGAGAGATGTGATAA+GGG | + | chr1.2:8821641-8821660 | MS.gene33180:CDS | 40.0% |
| ! | TTCTGAAGAAGCTGAAGATC+AGG | + | chr1.2:8822556-8822575 | MS.gene33180:CDS | 40.0% |
| !! | AGTTGGTGAGAGATGTGATA+AGG | + | chr1.2:8821640-8821659 | MS.gene33180:CDS | 40.0% |
| !!! | GGTTTTTGGGTAAGAGTTTG+AGG | - | chr1.2:8820993-8821012 | None:intergenic | 40.0% |
| !!! | TGTTCCTTCTTTTTTCCAGC+TGG | - | chr1.2:8820799-8820818 | None:intergenic | 40.0% |
| AAAAGGGATGTTGATGTGGG+AGG | + | chr1.2:8822436-8822455 | MS.gene33180:CDS | 45.0% | |
| AACATGGGAGGAATGTTTGG+AGG | + | chr1.2:8822664-8822683 | MS.gene33180:CDS | 45.0% | |
| AATCAAACCGGACTTCTACG+AGG | + | chr1.2:8822274-8822293 | MS.gene33180:CDS | 45.0% | |
| AATGGTTCGAGTCGGAAAGT+TGG | - | chr1.2:8822949-8822968 | None:intergenic | 45.0% | |
| ACAAGAACACCCTTTAACCC+CGG | - | chr1.2:8821675-8821694 | None:intergenic | 45.0% | |
| ACCAACATGGGAGGAATGTT+TGG | + | chr1.2:8822661-8822680 | MS.gene33180:CDS | 45.0% | |
| ACTGTTGATACCCAAGAGCT+AGG | - | chr1.2:8822304-8822323 | None:intergenic | 45.0% | |
| ATCAAACCGGACTTCTACGA+GGG | + | chr1.2:8822275-8822294 | MS.gene33180:CDS | 45.0% | |
| ATTCAACGCCTCGTAACACT+TGG | - | chr1.2:8821157-8821176 | None:intergenic | 45.0% | |
| CAGAGGACAGCATGGAAAAA+GGG | + | chr1.2:8822420-8822439 | MS.gene33180:CDS | 45.0% | |
| CCACCTGCGTAATATACAAC+CGG | - | chr1.2:8821788-8821807 | None:intergenic | 45.0% | |
| CGCGGTTTAGGAAAGTTGTT+AGG | + | chr1.2:8821349-8821368 | MS.gene33180:CDS | 45.0% | |
| GAAGATATATTCGGAGGCGA+TGG | + | chr1.2:8822010-8822029 | MS.gene33180:CDS | 45.0% | |
| GACGAAACAATGGTTCGAGT+CGG | - | chr1.2:8822957-8822976 | None:intergenic | 45.0% | |
| GACTCGAACCATTGTTTCGT+CGG | + | chr1.2:8822956-8822975 | MS.gene33180:CDS | 45.0% | |
| GAGAAGAAAGCCACCAATGT+TGG | + | chr1.2:8821444-8821463 | MS.gene33180:CDS | 45.0% | |
| GAGGATTCAGTGACGAATGA+TGG | + | chr1.2:8822032-8822051 | MS.gene33180:CDS | 45.0% | |
| GATAGGTATCCGGGGTTAAA+GGG | + | chr1.2:8821663-8821682 | MS.gene33180:CDS | 45.0% | |
| GATCCGGTTGTATATTACGC+AGG | + | chr1.2:8821782-8821801 | MS.gene33180:CDS | 45.0% | |
| GCCGAATAATTCAACTGCGT+TGG | + | chr1.2:8821224-8821243 | MS.gene33180:CDS | 45.0% | |
| GGAGCTTCTACAACTGACAT+TGG | + | chr1.2:8822713-8822732 | MS.gene33180:CDS | 45.0% | |
| GGATGATTACTGTGGAGGAA+TGG | + | chr1.2:8821907-8821926 | MS.gene33180:CDS | 45.0% | |
| GGGGAATGTTCACTTGTCTA+AGG | + | chr1.2:8822124-8822143 | MS.gene33180:CDS | 45.0% | |
| GGGTGAAGATTCGAAGGATA+AGG | + | chr1.2:8821494-8821513 | MS.gene33180:CDS | 45.0% | |
| GGTTCTGCAGCTCTATAACA+AGG | + | chr1.2:8822397-8822416 | MS.gene33180:CDS | 45.0% | |
| GTGATAAGGGATAGGTATCC+GGG | + | chr1.2:8821654-8821673 | MS.gene33180:CDS | 45.0% | |
| GTTTCAAGAGATGGCTGCTT+TGG | + | chr1.2:8822088-8822107 | MS.gene33180:CDS | 45.0% | |
| TAGAAGAGCCAAGTGTTACG+AGG | + | chr1.2:8821146-8821165 | MS.gene33180:CDS | 45.0% | |
| TCCAAACATTCCTCCCATGT+TGG | - | chr1.2:8822665-8822684 | None:intergenic | 45.0% | |
| TCCAAGACTCCATTACATCC+TGG | + | chr1.2:8822984-8823003 | MS.gene33180:CDS | 45.0% | |
| TCGATGACATAGTGCAAGCA+TGG | + | chr1.2:8822890-8822909 | MS.gene33180:CDS | 45.0% | |
| TCTCTCGAGCATGTTAAAGC+TGG | + | chr1.2:8822191-8822210 | MS.gene33180:CDS | 45.0% | |
| TGATAAGGGATAGGTATCCG+GGG | + | chr1.2:8821655-8821674 | MS.gene33180:CDS | 45.0% | |
| TGCACATCTTCACACCAACA+TGG | + | chr1.2:8821023-8821042 | MS.gene33180:CDS | 45.0% | |
| TTGAGCAAGCAAAGCTATGC+TGG | + | chr1.2:8822324-8822343 | MS.gene33180:CDS | 45.0% | |
| ! | ATGGGCTACGAAGGAGTATA+AGG | + | chr1.2:8822220-8822239 | MS.gene33180:CDS | 45.0% |
| ! | ATGTTCACTTGTCTAAGGCG+AGG | + | chr1.2:8822129-8822148 | MS.gene33180:CDS | 45.0% |
| ! | GAAACAGCAATGGAAGGTAC+GGG | + | chr1.2:8822764-8822783 | MS.gene33180:intron | 45.0% |
| ! | GGAATGAGATGTATGATGGG+TGG | + | chr1.2:8822911-8822930 | MS.gene33180:CDS | 45.0% |
| ! | TACGCAGGTGGATTTGGATA+TGG | + | chr1.2:8821797-8821816 | MS.gene33180:CDS | 45.0% |
| ! | TATCGAAGTTGGCCCTTTTG+AGG | + | chr1.2:8822373-8822392 | MS.gene33180:CDS | 45.0% |
| ! | TCCAGGATGTAATGGAGTCT+TGG | - | chr1.2:8822988-8823007 | None:intergenic | 45.0% |
| ! | TCTGAGTTGAGGTTAGCTGA+GGG | + | chr1.2:8821741-8821760 | MS.gene33180:CDS | 45.0% |
| ! | TTCTGAGTTGAGGTTAGCTG+AGG | + | chr1.2:8821740-8821759 | MS.gene33180:CDS | 45.0% |
| !! | AATGGCTTGTTCAGTTTGCG+AGG | + | chr1.2:8821925-8821944 | MS.gene33180:CDS | 45.0% |
| !! | AGAAGGAGATAAGGGTGTTG+GGG | + | chr1.2:8821878-8821897 | MS.gene33180:CDS | 45.0% |
| !! | AGTGTTACGAGGCGTTGAAT+CGG | + | chr1.2:8821157-8821176 | MS.gene33180:CDS | 45.0% |
| !! | ATAAGGGTGTTGGGGCTAAT+AGG | + | chr1.2:8821886-8821905 | MS.gene33180:CDS | 45.0% |
| !! | GAGAAGGAGATAAGGGTGTT+GGG | + | chr1.2:8821877-8821896 | MS.gene33180:CDS | 45.0% |
| !! | TGGATATGAATGGGCTACGA+AGG | + | chr1.2:8822211-8822230 | MS.gene33180:CDS | 45.0% |
| AGCTGCAGAACCTCCTCAAA+AGG | - | chr1.2:8822389-8822408 | None:intergenic | 50.0% | |
| ATGAGTAGTGGTGAGGTGAG+AGG | + | chr1.2:8821840-8821859 | MS.gene33180:CDS | 50.0% | |
| CCGGTTGTATATTACGCAGG+TGG | + | chr1.2:8821785-8821804 | MS.gene33180:CDS | 50.0% | |
| GATATATTCGGAGGCGATGG+AGG | + | chr1.2:8822013-8822032 | MS.gene33180:CDS | 50.0% | |
| GCAGAGGACAGCATGGAAAA+AGG | + | chr1.2:8822419-8822438 | MS.gene33180:CDS | 50.0% | |
| GCAGCTCTATAACAAGGCAG+AGG | + | chr1.2:8822403-8822422 | MS.gene33180:CDS | 50.0% | |
| GCTGCAGAACCTCCTCAAAA+GGG | - | chr1.2:8822388-8822407 | None:intergenic | 50.0% | |
| GGATAGGTATCCGGGGTTAA+AGG | + | chr1.2:8821662-8821681 | MS.gene33180:CDS | 50.0% | |
| GGGGTTGGAGAAGGAGATAA+GGG | + | chr1.2:8821870-8821889 | MS.gene33180:CDS | 50.0% | |
| GGTGAAGGGTGAAGATTCGA+AGG | + | chr1.2:8821488-8821507 | MS.gene33180:CDS | 50.0% | |
| GTTGATGTGGGAGGAGATTG+AGG | + | chr1.2:8822445-8822464 | MS.gene33180:CDS | 50.0% | |
| TAACAAGGCAGAGGACAGCA+TGG | + | chr1.2:8822412-8822431 | MS.gene33180:CDS | 50.0% | |
| TATTAGATGGGCGCAGTTGC+CGG | + | chr1.2:8821602-8821621 | MS.gene33180:CDS | 50.0% | |
| TGAGTAGTGGTGAGGTGAGA+GGG | + | chr1.2:8821841-8821860 | MS.gene33180:CDS | 50.0% | |
| TGCACTCGTTAATCGCTCGA+GGG | - | chr1.2:8821083-8821102 | None:intergenic | 50.0% | |
| TGGGGTTGGAGAAGGAGATA+AGG | + | chr1.2:8821869-8821888 | MS.gene33180:CDS | 50.0% | |
| TTGCACTCGTTAATCGCTCG+AGG | - | chr1.2:8821084-8821103 | None:intergenic | 50.0% | |
| ! | GGAGAAGGAGATAAGGGTGT+TGG | + | chr1.2:8821876-8821895 | MS.gene33180:CDS | 50.0% |
| ! | GGCGTTGAATCGGTTGGATT+TGG | + | chr1.2:8821167-8821186 | MS.gene33180:CDS | 50.0% |
| ! | GGGTTTGCACGGTCTTTTCA+GGG | + | chr1.2:8822526-8822545 | MS.gene33180:CDS | 50.0% |
| ! | GTCATGTGCTTGGTTCGATC+CGG | + | chr1.2:8821766-8821785 | MS.gene33180:CDS | 50.0% |
| ! | TGGGTTTGCACGGTCTTTTC+AGG | + | chr1.2:8822525-8822544 | MS.gene33180:CDS | 50.0% |
| ! | TTCACTTGTCTAAGGCGAGG+AGG | + | chr1.2:8822132-8822151 | MS.gene33180:CDS | 50.0% |
| !! | CGAGTGCCTTTTCAGGAAGA+CGG | + | chr1.2:8822155-8822174 | MS.gene33180:CDS | 50.0% |
| !! | GAGTGCCTTTTCAGGAAGAC+GGG | + | chr1.2:8822156-8822175 | MS.gene33180:CDS | 50.0% |
| !! | TTACGAGGCGTTGAATCGGT+TGG | + | chr1.2:8821161-8821180 | MS.gene33180:CDS | 50.0% |
| AAGGAGAAGGCGAGGAAGAG+CGG | + | chr1.2:8821403-8821422 | MS.gene33180:CDS | 55.0% | |
| ACTTTCCTAAACCGCGCAGC+AGG | - | chr1.2:8821345-8821364 | None:intergenic | 55.0% | |
| AGGAGTCCCTCGTAGAAGTC+CGG | - | chr1.2:8822284-8822303 | None:intergenic | 55.0% | |
| AGGGCATAAAGGAGAAGGCG+AGG | + | chr1.2:8821395-8821414 | MS.gene33180:CDS | 55.0% | |
| CTCGACCCGTCTTCCTGAAA+AGG | - | chr1.2:8822164-8822183 | None:intergenic | 55.0% | |
| GAGTAGTGGTGAGGTGAGAG+GGG | + | chr1.2:8821842-8821861 | MS.gene33180:CDS | 55.0% | |
| GCTAGGACTACCAACATGGG+AGG | + | chr1.2:8822652-8822671 | MS.gene33180:CDS | 55.0% | |
| GCTGAGGGTTGTCATGTGCT+TGG | + | chr1.2:8821756-8821775 | MS.gene33180:CDS | 55.0% | |
| GGAACACGCCGACGAAACAA+TGG | - | chr1.2:8822967-8822986 | None:intergenic | 55.0% | |
| GTGAGGTGAGAGGGGAGAAT+GGG | + | chr1.2:8821850-8821869 | MS.gene33180:CDS | 55.0% | |
| TGAGGTGAGAGGGGAGAATG+GGG | + | chr1.2:8821851-8821870 | MS.gene33180:CDS | 55.0% | |
| TTGCTCTGCAAGTTTCGCCG+AGG | + | chr1.2:8821106-8821125 | MS.gene33180:CDS | 55.0% | |
| ! | ACGAGGGACTCCTAGCTCTT+GGG | + | chr1.2:8822291-8822310 | MS.gene33180:CDS | 55.0% |
| ! | TACGAGGGACTCCTAGCTCT+TGG | + | chr1.2:8822290-8822309 | MS.gene33180:CDS | 55.0% |
| !! | CGAAGTTGGCCCTTTTGAGG+AGG | + | chr1.2:8822376-8822395 | MS.gene33180:CDS | 55.0% |
| GGGGAGAATGGGGTTGGAGA+AGG | + | chr1.2:8821861-8821880 | MS.gene33180:CDS | 60.0% | |
| GGTGAGGTGAGAGGGGAGAA+TGG | + | chr1.2:8821849-8821868 | MS.gene33180:CDS | 60.0% | |
| GTGAGAGGGGAGAATGGGGT+TGG | + | chr1.2:8821855-8821874 | MS.gene33180:CDS | 60.0% | |
| TTCCTAAACCGCGCAGCAGG+CGG | - | chr1.2:8821342-8821361 | None:intergenic | 60.0% | |
| ! | GAGGAGGCGAGTGCCTTTTC+AGG | + | chr1.2:8822148-8822167 | MS.gene33180:CDS | 60.0% |
| AAGTAGAGCCGCCTGCTGCG+CGG | + | chr1.2:8821331-8821350 | MS.gene33180:CDS | 65.0% | |
| AGCCGCCTGCTGCGCGGTTT+AGG | + | chr1.2:8821337-8821356 | MS.gene33180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8820787 | 8823017 | 8820787 | ID=MS.gene33180 |
| chr1.2 | mRNA | 8820787 | 8823017 | 8820787 | ID=MS.gene33180.t1;Parent=MS.gene33180 |
| chr1.2 | exon | 8820787 | 8822779 | 8820787 | ID=MS.gene33180.t1.exon1;Parent=MS.gene33180.t1 |
| chr1.2 | CDS | 8820787 | 8822779 | 8820787 | ID=cds.MS.gene33180.t1;Parent=MS.gene33180.t1 |
| chr1.2 | exon | 8822881 | 8823017 | 8822881 | ID=MS.gene33180.t1.exon2;Parent=MS.gene33180.t1 |
| chr1.2 | CDS | 8822881 | 8823017 | 8822881 | ID=cds.MS.gene33180.t1;Parent=MS.gene33180.t1 |
| Gene Sequence |
| Protein sequence |
