Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35789.t1 | XP_003597029.1 | 98.6 | 222 | 3 | 0 | 1 | 222 | 38 | 259 | 8.70E-102 | 379.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35789.t1 | Q9LSX7 | 74.0 | 227 | 54 | 2 | 1 | 222 | 41 | 267 | 4.9e-77 | 288.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35789.t1 | G7IKL0 | 98.6 | 222 | 3 | 0 | 1 | 222 | 38 | 259 | 6.3e-102 | 379.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35789 | 0.83148 | 1.63E-55 | -1.69E-46 |
| MS.gene04918 | MS.gene35789 | 0.82059 | 6.33E-53 | -1.69E-46 |
| MS.gene04919 | MS.gene35789 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene35789 | 0.815776 | 7.77E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene35789 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene35789 | 0.832467 | 9.30E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene35789 | 0.817559 | 3.10E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene35789 | 0.832085 | 1.16E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene35789 | 0.849135 | 3.93E-60 | -1.69E-46 |
| MS.gene050084 | MS.gene35789 | 0.832677 | 8.25E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene35789 | 0.863955 | 1.72E-64 | -1.69E-46 |
| MS.gene050213 | MS.gene35789 | 0.835763 | 1.39E-56 | -1.69E-46 |
| MS.gene050359 | MS.gene35789 | 0.829105 | 6.20E-55 | -1.69E-46 |
| MS.gene050384 | MS.gene35789 | 0.816911 | 4.33E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene35789 | 0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene35789 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene35789 | 0.826724 | 2.32E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene35789 | 0.83849 | 2.79E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene35789 | 0.865679 | 4.96E-65 | -1.69E-46 |
| MS.gene050689 | MS.gene35789 | 0.853626 | 2.11E-61 | -1.69E-46 |
| MS.gene050737 | MS.gene35789 | 0.809733 | 1.64E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene35789 | 0.803264 | 3.79E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene35789 | 0.81819 | 2.23E-52 | -1.69E-46 |
| MS.gene050931 | MS.gene35789 | 0.854187 | 1.45E-61 | -1.69E-46 |
| MS.gene050941 | MS.gene35789 | 0.851423 | 8.96E-61 | -1.69E-46 |
| MS.gene050945 | MS.gene35789 | 0.80761 | 4.65E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene35789 | 0.874585 | 6.02E-68 | -1.69E-46 |
| MS.gene051234 | MS.gene35789 | 0.8651 | 7.55E-65 | -1.69E-46 |
| MS.gene051343 | MS.gene35789 | 0.850955 | 1.22E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene35789 | 0.825112 | 5.60E-54 | -1.69E-46 |
| MS.gene051642 | MS.gene35789 | 0.801746 | 7.78E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene35789 | 0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene35789 | 0.827748 | 1.32E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene35789 | 0.877449 | 6.23E-69 | -1.69E-46 |
| MS.gene052307 | MS.gene35789 | 0.861841 | 7.72E-64 | -1.69E-46 |
| MS.gene052342 | MS.gene35789 | 0.834018 | 3.82E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene35789 | 0.823184 | 1.59E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene35789 | 0.817823 | 2.70E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene35789 | 0.804423 | 2.18E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene35789 | 0.818673 | 1.73E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene35789 | 0.848088 | 7.66E-60 | -1.69E-46 |
| MS.gene053079 | MS.gene35789 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene35789 | 0.817558 | 3.10E-52 | -1.69E-46 |
| MS.gene053228 | MS.gene35789 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene053456 | MS.gene35789 | 0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene35789 | 0.842759 | 2.12E-58 | -1.69E-46 |
| MS.gene054004 | MS.gene35789 | 0.919788 | 2.90E-87 | -1.69E-46 |
| MS.gene054005 | MS.gene35789 | 0.879593 | 1.10E-69 | -1.69E-46 |
| MS.gene054403 | MS.gene35789 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene35789 | 0.800489 | 1.41E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene35789 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene35789 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene35789 | 0.859136 | 5.10E-63 | -1.69E-46 |
| MS.gene056045 | MS.gene35789 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene056089 | MS.gene35789 | 0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene35789 | 0.838283 | 3.15E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene35789 | 0.868376 | 6.84E-66 | -1.69E-46 |
| MS.gene056308 | MS.gene35789 | 0.803564 | 3.28E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene35789 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene056578 | MS.gene35789 | 0.840989 | 6.24E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene35789 | 0.850416 | 1.72E-60 | -1.69E-46 |
| MS.gene056786 | MS.gene35789 | 0.829891 | 3.99E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene35789 | 0.826851 | 2.16E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene35789 | 0.831425 | 1.68E-55 | -1.69E-46 |
| MS.gene056881 | MS.gene35789 | 0.813113 | 3.02E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene35789 | 0.815662 | 8.24E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene35789 | 0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene35789 | 0.855834 | 4.84E-62 | -1.69E-46 |
| MS.gene058781 | MS.gene35789 | 0.837161 | 6.12E-57 | -1.69E-46 |
| MS.gene059007 | MS.gene35789 | 0.820111 | 8.15E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene35789 | 0.865819 | 4.48E-65 | -1.69E-46 |
| MS.gene059778 | MS.gene35789 | 0.829492 | 4.99E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene35789 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene35789 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene35789 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene35789 | 0.82939 | 5.29E-55 | -1.69E-46 |
| MS.gene060435 | MS.gene35789 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene35789 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene35789 | 0.811235 | 7.75E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene35789 | 0.859833 | 3.15E-63 | -1.69E-46 |
| MS.gene060935 | MS.gene35789 | 0.85597 | 4.41E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene35789 | 0.865634 | 5.12E-65 | -1.69E-46 |
| MS.gene061006 | MS.gene35789 | 0.805446 | 1.33E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene35789 | 0.862389 | 5.25E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35789.t1 | MTR_2g088850 | 98.649 | 222 | 3 | 0 | 1 | 222 | 38 | 259 | 8.02e-162 | 448 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35789.t1 | AT3G21865 | 70.563 | 231 | 55 | 2 | 1 | 222 | 41 | 267 | 7.04e-106 | 306 |
Find 0 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAACAATAAAAAAAT+GGG | - | 15120:2382-2401 | MS.gene35789:intergenic | 10.0% |
| !! | TAAGATAAACAATAAAAAAA+TGG | - | 15120:2383-2402 | MS.gene35789:intergenic | 10.0% |
| !!! | TTAAATTTTTAATCTACTTA+AGG | + | 15120:1775-1794 | MS.gene35789:intron | 10.0% |
| !! | TTATTGTTTATCTTAATAAG+TGG | + | 15120:2388-2407 | MS.gene35789:intron | 15.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | - | 15120:1519-1538 | MS.gene35789:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | + | 15120:2032-2051 | MS.gene35789:intron | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | - | 15120:3055-3074 | MS.gene35789:intergenic | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | + | 15120:2094-2113 | MS.gene35789:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | + | 15120:2033-2052 | MS.gene35789:intron | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | - | 15120:2960-2979 | MS.gene35789:intergenic | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | - | 15120:4824-4843 | MS.gene35789:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | - | 15120:3054-3073 | MS.gene35789:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | - | 15120:4023-4042 | MS.gene35789:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | - | 15120:1827-1846 | MS.gene35789:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | + | 15120:4237-4256 | MS.gene35789:intron | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | - | 15120:3134-3153 | MS.gene35789:intergenic | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | + | 15120:3605-3624 | MS.gene35789:intron | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | - | 15120:1763-1782 | MS.gene35789:intergenic | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | - | 15120:2682-2701 | MS.gene35789:intergenic | 20.0% |
| !!! | ATCATTCCTCTTTTTTTTTA+GGG | + | 15120:3352-3371 | MS.gene35789:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTT+AGG | + | 15120:3351-3370 | MS.gene35789:intron | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | + | 15120:3319-3338 | MS.gene35789:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | - | 15120:3995-4014 | MS.gene35789:intergenic | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | - | 15120:2993-3012 | MS.gene35789:intergenic | 20.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | + | 15120:1794-1813 | MS.gene35789:intron | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | - | 15120:1677-1696 | MS.gene35789:intergenic | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | - | 15120:1464-1483 | MS.gene35789:intergenic | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | - | 15120:3728-3747 | MS.gene35789:intergenic | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | - | 15120:4227-4246 | MS.gene35789:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | + | 15120:2994-3013 | MS.gene35789:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | + | 15120:2808-2827 | MS.gene35789:CDS | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | - | 15120:3361-3380 | MS.gene35789:intergenic | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | - | 15120:2319-2338 | MS.gene35789:intergenic | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | - | 15120:2875-2894 | MS.gene35789:intergenic | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | + | 15120:2147-2166 | MS.gene35789:intron | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | + | 15120:2034-2053 | MS.gene35789:intron | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | + | 15120:4161-4180 | MS.gene35789:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | - | 15120:4608-4627 | MS.gene35789:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | + | 15120:4462-4481 | MS.gene35789:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | + | 15120:2995-3014 | MS.gene35789:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | - | 15120:3040-3059 | MS.gene35789:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | - | 15120:4293-4312 | MS.gene35789:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | + | 15120:2317-2336 | MS.gene35789:intron | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | + | 15120:2154-2173 | MS.gene35789:intron | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | + | 15120:3424-3443 | MS.gene35789:intron | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | + | 15120:1731-1750 | MS.gene35789:intron | 25.0% |
| AAACATAAGTATGCAGCAAT+CGG | - | 15120:4577-4596 | MS.gene35787:intergenic | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | - | 15120:2582-2601 | MS.gene35789:intergenic | 30.0% | |
| AATATTATAACACGACACCA+TGG | + | 15120:4273-4292 | MS.gene35789:intron | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | - | 15120:1457-1476 | MS.gene35789:intergenic | 30.0% | |
| AATGGTAAAAGATGTTTCTC+AGG | - | 15120:3977-3996 | MS.gene35789:intergenic | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | + | 15120:4287-4306 | MS.gene35789:intron | 30.0% | |
| AGTATAAAAAAGTAGTGCAC+AGG | - | 15120:4316-4335 | MS.gene35789:intergenic | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | - | 15120:1426-1445 | MS.gene35789:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | - | 15120:4740-4759 | MS.gene35789:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | - | 15120:1456-1475 | MS.gene35789:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | + | 15120:2588-2607 | MS.gene35789:intron | 30.0% | |
| CACACACTTCGTATTTATAA+TGG | - | 15120:1951-1970 | MS.gene35789:intergenic | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | + | 15120:1370-1389 | MS.gene35789:CDS | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | + | 15120:2894-2913 | MS.gene35789:intron | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | - | 15120:4741-4760 | MS.gene35789:intergenic | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | + | 15120:3001-3020 | MS.gene35789:intron | 30.0% | |
| TTCGAACTAAATTTGATCTC+AGG | + | 15120:3531-3550 | MS.gene35789:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | + | 15120:1371-1390 | MS.gene35789:CDS | 30.0% | |
| ! | GATCATAAGAAATGTCGATT+TGG | + | 15120:1730-1749 | MS.gene35789:intron | 30.0% |
| !! | ATGGTGTCGTGTTATAATAT+TGG | - | 15120:4274-4293 | MS.gene35789:intergenic | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | - | 15120:1760-1779 | MS.gene35789:intergenic | 30.0% |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | - | 15120:2132-2151 | MS.gene35789:intergenic | 30.0% |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | - | 15120:3295-3314 | MS.gene35789:intergenic | 30.0% |
| !!! | TGTGCACTACTTTTTTATAC+TGG | + | 15120:4315-4334 | MS.gene35789:intron | 30.0% |
| AACAACAAATCATGTTGCAG+AGG | + | 15120:4848-4867 | MS.gene35789:intron | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | + | 15120:4111-4130 | MS.gene35789:intron | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | - | 15120:2581-2600 | MS.gene35789:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | - | 15120:4010-4029 | MS.gene35789:intergenic | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | + | 15120:4112-4131 | MS.gene35789:intron | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | + | 15120:2478-2497 | MS.gene35789:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | - | 15120:1490-1509 | MS.gene35789:intergenic | 35.0% | |
| ATGCACTCTTTATGTAGTAG+TGG | + | 15120:1643-1662 | MS.gene35789:intron | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | + | 15120:2234-2253 | MS.gene35789:intron | 35.0% | |
| CGATATAGTTGCGTATAAAC+TGG | + | 15120:2474-2493 | MS.gene35789:intron | 35.0% | |
| GGTATGGGATATCAAAATAG+AGG | - | 15120:4617-4636 | MS.gene35789:intergenic | 35.0% | |
| GTCACCTACATACAACTTAT+TGG | - | 15120:2595-2614 | MS.gene35789:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | + | 15120:2813-2832 | MS.gene35789:CDS | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | + | 15120:1329-1348 | MS.gene35789:CDS | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | + | 15120:2479-2498 | MS.gene35789:intron | 35.0% | |
| TGACAAGATATAACTCTTGC+AGG | - | 15120:4440-4459 | MS.gene35789:intergenic | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | + | 15120:2814-2833 | MS.gene35789:CDS | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | - | 15120:3846-3865 | MS.gene35789:intergenic | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | + | 15120:4686-4705 | MS.gene35789:CDS | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | + | 15120:3928-3947 | MS.gene35789:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | + | 15120:2560-2579 | MS.gene35789:intron | 35.0% | |
| ! | AGGAGATGGTAATTTCTAGA+AGG | - | 15120:1708-1727 | MS.gene35789:intergenic | 35.0% |
| ! | ATATGTTTGTTGCCATTTGC+TGG | + | 15120:4367-4386 | MS.gene35789:intron | 35.0% |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | - | 15120:4901-4920 | MS.gene35789:intergenic | 35.0% |
| ! | GCTACAGATCACAATTTTGT+CGG | - | 15120:4499-4518 | MS.gene35789:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | - | 15120:1903-1922 | MS.gene35789:intergenic | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | + | 15120:1564-1583 | MS.gene35789:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | - | 15120:4417-4436 | MS.gene35789:intergenic | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | + | 15120:1563-1582 | MS.gene35789:intron | 35.0% |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | + | 15120:1669-1688 | MS.gene35789:intron | 35.0% |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | + | 15120:1562-1581 | MS.gene35789:intron | 35.0% |
| AAGTTAACCACCTTCTTGCT+GGG | + | 15120:3754-3773 | MS.gene35789:intron | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | - | 15120:4633-4652 | MS.gene35789:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | - | 15120:3557-3576 | MS.gene35789:intergenic | 40.0% | |
| AGATCTCCTAATCCTACACA+AGG | + | 15120:1261-1280 | MS.gene35789:CDS | 40.0% | |
| AGCCAATGCATGAATGTTTG+TGG | + | 15120:1485-1504 | MS.gene35789:intron | 40.0% | |
| AGCTAACTGGGTGACAATTT+CGG | - | 15120:4728-4747 | MS.gene35789:intergenic | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | - | 15120:2777-2796 | MS.gene35789:intergenic | 40.0% | |
| CAGTATGTGTGTTCCAAACT+AGG | - | 15120:3440-3459 | MS.gene35789:intergenic | 40.0% | |
| CCATGCAAGGACAATGTAAA+AGG | + | 15120:4174-4193 | MS.gene35789:intron | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | + | 15120:1883-1902 | MS.gene35789:intron | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | - | 15120:1886-1905 | MS.gene35789:intergenic | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | + | 15120:1601-1620 | MS.gene35789:CDS | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | - | 15120:4632-4651 | MS.gene35789:intergenic | 40.0% | |
| GATATCCCATACCTATATGC+AGG | + | 15120:4624-4643 | MS.gene35789:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | + | 15120:1262-1281 | MS.gene35789:CDS | 40.0% | |
| TCATAATAGCCGGGAAACAT+AGG | - | 15120:2572-2591 | MS.gene35789:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | - | 15120:1728-1747 | MS.gene35789:intergenic | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | + | 15120:3651-3670 | MS.gene35789:CDS | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | - | 15120:1722-1741 | MS.gene35789:intergenic | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | - | 15120:1324-1343 | MS.gene35789:intergenic | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | - | 15120:4177-4196 | MS.gene35789:intergenic | 40.0% |
| ! | CTGTTGCGATTGTTTTCACT+TGG | + | 15120:1229-1248 | MS.gene35789:CDS | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | - | 15120:4425-4444 | MS.gene35789:intergenic | 40.0% |
| ! | TGGGAATACTTGATGACATG+AGG | + | 15120:2498-2517 | MS.gene35789:intron | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | + | 15120:1232-1251 | MS.gene35789:CDS | 40.0% |
| ! | TTTGTGTCGATATGCCAATC+TGG | - | 15120:4703-4722 | MS.gene35789:intergenic | 40.0% |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | + | 15120:2775-2794 | MS.gene35789:CDS | 40.0% |
| !! | CTGTTTTATAAGGCGCTATG+TGG | - | 15120:4891-4910 | MS.gene35789:intergenic | 40.0% |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | - | 15120:1360-1379 | MS.gene35789:intergenic | 40.0% |
| !! | TGCTCTTTTCAAGACATCCT+TGG | + | 15120:4397-4416 | MS.gene35789:intron | 40.0% |
| CTTGTAGCGTTAGAAGAAGC+AGG | + | 15120:3650-3669 | MS.gene35789:CDS | 45.0% | |
| GAAGTTAACCACCTTCTTGC+TGG | + | 15120:3753-3772 | MS.gene35789:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | - | 15120:4382-4401 | MS.gene35789:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | - | 15120:4727-4746 | MS.gene35789:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | - | 15120:4638-4657 | MS.gene35789:intergenic | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | + | 15120:3673-3692 | MS.gene35789:CDS | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | + | 15120:2621-2640 | MS.gene35789:CDS | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | + | 15120:1410-1429 | MS.gene35789:CDS | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | - | 15120:3566-3585 | MS.gene35789:intergenic | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | + | 15120:3652-3671 | MS.gene35789:CDS | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | - | 15120:1378-1397 | MS.gene35789:intergenic | 45.0% | |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | + | 15120:3685-3704 | MS.gene35789:CDS | 45.0% |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | + | 15120:3679-3698 | MS.gene35789:CDS | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | + | 15120:2185-2204 | MS.gene35789:intron | 5.0% |
| AACCGTCATCATGACTAGGG+AGG | + | 15120:4115-4134 | MS.gene35789:intron | 50.0% | |
| AAGTAGTCCAGAGGAGCTTC+AGG | + | 15120:2645-2664 | MS.gene35789:CDS | 50.0% | |
| ACCGTCATCATGACTAGGGA+GGG | + | 15120:4116-4135 | MS.gene35789:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | + | 15120:2208-2227 | MS.gene35789:intron | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | + | 15120:2820-2839 | MS.gene35789:CDS | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | + | 15120:1271-1290 | MS.gene35789:CDS | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | + | 15120:2340-2359 | MS.gene35789:intron | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | - | 15120:2639-2658 | MS.gene35789:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | + | 15120:2636-2655 | MS.gene35789:CDS | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | + | 15120:1265-1284 | MS.gene35789:CDS | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | - | 15120:2617-2636 | MS.gene35789:intergenic | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | + | 15120:2339-2358 | MS.gene35789:intron | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | + | 15120:2338-2357 | MS.gene35789:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | + | 15120:1303-1322 | MS.gene35789:CDS | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | + | 15120:1593-1612 | MS.gene35789:CDS | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | - | 15120:2230-2249 | MS.gene35789:intergenic | 50.0% | |
| TAGGTGACCTGTCGTCTTCT+TGG | + | 15120:2607-2626 | MS.gene35789:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | - | 15120:1270-1289 | MS.gene35789:intergenic | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | - | 15120:2655-2674 | MS.gene35789:intergenic | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | + | 15120:4649-4668 | MS.gene35789:CDS | 50.0% |
| !! | GAAGCAGGGGTATTCACTTC+AGG | + | 15120:3665-3684 | MS.gene35789:CDS | 50.0% |
| AACACTGCCCAGCAAGAAGG+TGG | - | 15120:3764-3783 | MS.gene35789:intergenic | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | 15120:2210-2229 | MS.gene35789:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | - | 15120:2229-2248 | MS.gene35789:intergenic | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | + | 15120:1285-1304 | MS.gene35789:CDS | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | + | 15120:1576-1595 | MS.gene35789:CDS | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | + | 15120:1277-1296 | MS.gene35789:CDS | 55.0% | |
| CCCCTCCCTAGTCATGATGA+CGG | - | 15120:4120-4139 | MS.gene35789:intergenic | 55.0% | |
| CCGTCATCATGACTAGGGAG+GGG | + | 15120:4117-4136 | MS.gene35789:intron | 55.0% | |
| CGCTTTCGTCATCCAGAACC+CGG | - | 15120:2835-2854 | MS.gene35789:intergenic | 55.0% | |
| CGTCATCATGACTAGGGAGG+GGG | + | 15120:4118-4137 | MS.gene35789:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | - | 15120:1578-1597 | MS.gene35789:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | + | 15120:2209-2228 | MS.gene35789:intron | 55.0% | |
| GTCATCATGACTAGGGAGGG+GGG | + | 15120:4119-4138 | MS.gene35789:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | 15120:2359-2378 | MS.gene35789:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | - | 15120:3767-3786 | MS.gene35789:intergenic | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | - | 15120:1276-1295 | MS.gene35789:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | + | 15120:2341-2360 | MS.gene35789:intron | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | 15120:2360-2379 | MS.gene35789:intergenic | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | + | 15120:3668-3687 | MS.gene35789:CDS | 55.0% |
| !! | GGTTCTGGATGACGAAAGCG+AGG | + | 15120:2835-2854 | MS.gene35789:CDS | 55.0% |
| CTGCCTCACTATCTGCCCCA+AGG | - | 15120:1582-1601 | MS.gene35789:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | - | 15120:2227-2246 | MS.gene35789:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | - | 15120:2358-2377 | MS.gene35789:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | - | 15120:2228-2247 | MS.gene35789:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | + | 15120:1282-1301 | MS.gene35789:CDS | 60.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | + | 15120:1201-1220 | MS.gene35789:CDS | 65.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | - | 15120:2346-2365 | MS.gene35789:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | + | 15120:2216-2235 | MS.gene35789:intron | 70.0% | |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | + | 15120:2347-2366 | MS.gene35789:intron | 70.0% |
| ! | AACCAATGCCCCGGGGGCAC+TGG | - | 15120:2221-2240 | MS.gene35789:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15120 | gene | 1195 | 4927 | 1195 | ID=MS.gene35789 |
| 15120 | mRNA | 1195 | 4927 | 1195 | ID=MS.gene35789.t1;Parent=MS.gene35789 |
| 15120 | exon | 1195 | 1431 | 1195 | ID=MS.gene35789.t1.exon1;Parent=MS.gene35789.t1 |
| 15120 | CDS | 1195 | 1431 | 1195 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 1575 | 1622 | 1575 | ID=MS.gene35789.t1.exon2;Parent=MS.gene35789.t1 |
| 15120 | CDS | 1575 | 1622 | 1575 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 2610 | 2666 | 2610 | ID=MS.gene35789.t1.exon3;Parent=MS.gene35789.t1 |
| 15120 | CDS | 2610 | 2666 | 2610 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 2755 | 2856 | 2755 | ID=MS.gene35789.t1.exon4;Parent=MS.gene35789.t1 |
| 15120 | CDS | 2755 | 2856 | 2755 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 3641 | 3706 | 3641 | ID=MS.gene35789.t1.exon5;Parent=MS.gene35789.t1 |
| 15120 | CDS | 3641 | 3706 | 3641 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 4646 | 4747 | 4646 | ID=MS.gene35789.t1.exon6;Parent=MS.gene35789.t1 |
| 15120 | CDS | 4646 | 4747 | 4646 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| 15120 | exon | 4868 | 4927 | 4868 | ID=MS.gene35789.t1.exon7;Parent=MS.gene35789.t1 |
| 15120 | CDS | 4868 | 4927 | 4868 | ID=cds.MS.gene35789.t1;Parent=MS.gene35789.t1 |
| Gene Sequence |
| Protein sequence |
