Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38274.t1 | XP_003617849.2 | 98.2 | 277 | 5 | 0 | 1 | 277 | 43 | 319 | 8.50E-155 | 556.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38274.t1 | Q8LDU4 | 54.8 | 272 | 118 | 2 | 9 | 277 | 49 | 318 | 3.3e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38274.t1 | G7KEI7 | 98.2 | 277 | 5 | 0 | 1 | 277 | 43 | 319 | 6.1e-155 | 556.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene38274 | 0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene38274 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene38274 | 0.827534 | 1.48E-54 | -1.69E-46 |
| MS.gene049356 | MS.gene38274 | 0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene38274 | 0.807933 | 3.97E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene38274 | 0.822053 | 2.91E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene38274 | 0.817273 | 3.59E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene38274 | 0.814625 | 1.40E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene38274 | 0.823424 | 1.40E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene38274 | 0.82123 | 4.51E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene38274 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene38274 | 0.804964 | 1.68E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene38274 | 0.821281 | 4.39E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene38274 | 0.85956 | 3.80E-63 | -1.69E-46 |
| MS.gene051692 | MS.gene38274 | 0.825561 | 4.38E-54 | -1.69E-46 |
| MS.gene051734 | MS.gene38274 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene38274 | 0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene38274 | 0.845369 | 4.24E-59 | -1.69E-46 |
| MS.gene051874 | MS.gene38274 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene051949 | MS.gene38274 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene052136 | MS.gene38274 | 0.807684 | 4.48E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene38274 | 0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene38274 | 0.801388 | 9.22E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene38274 | 0.833582 | 4.91E-56 | -1.69E-46 |
| MS.gene052484 | MS.gene38274 | 0.844128 | 9.16E-59 | -1.69E-46 |
| MS.gene052870 | MS.gene38274 | 0.808616 | 2.84E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene38274 | 0.812587 | 3.93E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene38274 | 0.80094 | 1.14E-48 | -1.69E-46 |
| MS.gene053104 | MS.gene38274 | 0.816745 | 4.72E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene38274 | 0.81 | 1.43E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene38274 | 0.863233 | 2.88E-64 | -1.69E-46 |
| MS.gene053632 | MS.gene38274 | 0.815944 | 7.13E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene38274 | 0.827245 | 1.74E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene38274 | 0.831502 | 1.61E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene38274 | 0.818029 | 2.43E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene38274 | 0.802846 | 4.62E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene38274 | 0.814101 | 1.83E-51 | -1.69E-46 |
| MS.gene054955 | MS.gene38274 | 0.821043 | 4.98E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene38274 | 0.834831 | 2.39E-56 | -1.69E-46 |
| MS.gene055289 | MS.gene38274 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene38274 | 0.852639 | 4.04E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene38274 | 0.841282 | 5.22E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene38274 | 0.818733 | 1.68E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene38274 | 0.840774 | 7.10E-58 | -1.69E-46 |
| MS.gene056511 | MS.gene38274 | 0.809891 | 1.51E-50 | -1.69E-46 |
| MS.gene05664 | MS.gene38274 | 0.824599 | 7.40E-54 | -1.69E-46 |
| MS.gene05666 | MS.gene38274 | 0.823912 | 1.07E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene38274 | 0.815496 | 8.98E-52 | -1.69E-46 |
| MS.gene057086 | MS.gene38274 | 0.806054 | 9.91E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene38274 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene38274 | 0.835428 | 1.69E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene38274 | 0.814635 | 1.39E-51 | -1.69E-46 |
| MS.gene057857 | MS.gene38274 | 0.819085 | 1.40E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene38274 | 0.853445 | 2.38E-61 | -1.69E-46 |
| MS.gene058006 | MS.gene38274 | 0.81537 | 9.57E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene38274 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene38274 | 0.827224 | 1.76E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene38274 | 0.827146 | 1.84E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene38274 | 0.815409 | 9.38E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene38274 | 0.800575 | 1.35E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene38274 | 0.825516 | 4.49E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene38274 | 0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene38274 | 0.838386 | 2.97E-57 | -1.69E-46 |
| MS.gene060193 | MS.gene38274 | 0.809853 | 1.54E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene38274 | 0.815232 | 1.03E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene38274 | 0.816781 | 4.63E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene38274 | 0.825415 | 4.75E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene38274 | 0.819744 | 9.89E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene38274 | 0.803284 | 3.75E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene38274 | 0.828531 | 8.54E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene38274 | 0.805005 | 1.65E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene38274 | 0.828823 | 7.26E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38274.t1 | MTR_5g096150 | 98.195 | 277 | 5 | 0 | 1 | 277 | 43 | 319 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38274.t1 | AT4G37000 | 53.571 | 280 | 125 | 2 | 1 | 277 | 41 | 318 | 3.63e-102 | 301 |
Find 50 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACGACCTTGCTTCTTC+TGG | 0.137652 | 5.3:+77762510 | None:intergenic |
| CTCGAAAAGACCTTGTTCTT+TGG | 0.238806 | 5.3:-77761172 | MS.gene38274:CDS |
| CAAAGCAAGTGTTGGGGATA+TGG | 0.247429 | 5.3:-77760938 | MS.gene38274:CDS |
| ATCAGCTCGAACACAAAATT+TGG | 0.277458 | 5.3:+77761239 | None:intergenic |
| CCCAACACTTGCTTTGAAAT+CGG | 0.292400 | 5.3:+77760945 | None:intergenic |
| AGAACAAGAATTAGCATTGT+TGG | 0.348949 | 5.3:+77761206 | None:intergenic |
| TCAAGCTTTCCAAGGTTGTT+TGG | 0.358482 | 5.3:-77760807 | MS.gene38274:CDS |
| AACAGTAAAATACTCCTTGA+TGG | 0.363131 | 5.3:+77760755 | None:intergenic |
| GCTACGACCTTGCTTCTTCT+GGG | 0.370091 | 5.3:+77762511 | None:intergenic |
| AAGACTATTGAGGTTGATCT+TGG | 0.379733 | 5.3:-77760831 | MS.gene38274:CDS |
| AGAAGCTGCAAAACAGATAT+TGG | 0.387915 | 5.3:-77760781 | MS.gene38274:CDS |
| CTCTTATAGTATTGAACATC+AGG | 0.390571 | 5.3:+77762377 | None:intergenic |
| TCCTACTTCTCTCTCGGAAC+AGG | 0.405515 | 5.3:+77760902 | None:intergenic |
| CCGATTTCAAAGCAAGTGTT+GGG | 0.413297 | 5.3:-77760945 | MS.gene38274:CDS |
| CCAACACTTGCTTTGAAATC+GGG | 0.426823 | 5.3:+77760946 | None:intergenic |
| TTAGCATTGTTGGACTGCTT+CGG | 0.427662 | 5.3:+77761216 | None:intergenic |
| CCCGATTTCAAAGCAAGTGT+TGG | 0.432798 | 5.3:-77760946 | MS.gene38274:CDS |
| CGATACACATAGGCAGGCTT+TGG | 0.432959 | 5.3:-77761111 | MS.gene38274:CDS |
| GTGACATAAGGTTGAACCTC+TGG | 0.461727 | 5.3:+77761080 | None:intergenic |
| ATCATTTGAACTGTTAAGAT+AGG | 0.468826 | 5.3:+77761265 | None:intergenic |
| CAATACTATAAGAGCAAGAA+TGG | 0.480003 | 5.3:-77762368 | MS.gene38274:CDS |
| ATCAAGCATGAGATTCTTGT+GGG | 0.484852 | 5.3:+77762457 | None:intergenic |
| TTCCTCTCCTACTTCTCTCT+CGG | 0.487400 | 5.3:+77760896 | None:intergenic |
| ACAGATATTGGAAGCCATCA+AGG | 0.487475 | 5.3:-77760769 | MS.gene38274:CDS |
| ATCTTGGTTCAAGCTTTCCA+AGG | 0.509846 | 5.3:-77760815 | MS.gene38274:CDS |
| GTGCATGCTGAGCTACCAAC+AGG | 0.516588 | 5.3:-77761317 | MS.gene38274:CDS |
| TTGTGGGGTGCTGAAACAAA+TGG | 0.519655 | 5.3:+77762473 | None:intergenic |
| ATATCTAGTGATCCTCCTGT+TGG | 0.539776 | 5.3:+77761302 | None:intergenic |
| CATTAGAAACAAGACTATTG+AGG | 0.540436 | 5.3:-77760841 | MS.gene38274:CDS |
| ACAGGGGAATCAGTGTTGCT+TGG | 0.543335 | 5.3:+77762317 | None:intergenic |
| TAAACTCGATACACATAGGC+AGG | 0.546034 | 5.3:-77761117 | MS.gene38274:CDS |
| ATTCAGACAGAAAATGATGA+AGG | 0.546561 | 5.3:-77761005 | MS.gene38274:CDS |
| AAAAGCGAAGAAGTGACATA+AGG | 0.548015 | 5.3:+77761068 | None:intergenic |
| GCTTCTGGACCAAACAACCT+TGG | 0.551283 | 5.3:+77760798 | None:intergenic |
| GCAAGTGTTGGGGATATGGT+TGG | 0.554687 | 5.3:-77760934 | MS.gene38274:CDS |
| ATGCGAACAAATATAGCGGT+TGG | 0.559048 | 5.3:+77761026 | None:intergenic |
| ACATCAGGTGGAAGTGAACA+AGG | 0.566315 | 5.3:+77762392 | None:intergenic |
| GATCAAGCATGAGATTCTTG+TGG | 0.577920 | 5.3:+77762456 | None:intergenic |
| GCCTGTTCCGAGAGAGAAGT+AGG | 0.581979 | 5.3:-77760903 | MS.gene38274:CDS |
| GGTAATCTGGCCAAAGAACA+AGG | 0.591389 | 5.3:+77761162 | None:intergenic |
| TTCCGAGAGAGAAGTAGGAG+AGG | 0.601529 | 5.3:-77760898 | MS.gene38274:CDS |
| TTATAGTATTGAACATCAGG+TGG | 0.606078 | 5.3:+77762380 | None:intergenic |
| ATGGATACCCAGAAGAAGCA+AGG | 0.631772 | 5.3:-77762518 | MS.gene38274:CDS |
| CGATTTCAAAGCAAGTGTTG+GGG | 0.632172 | 5.3:-77760944 | MS.gene38274:CDS |
| ACACTAAACTCGATACACAT+AGG | 0.635620 | 5.3:-77761121 | MS.gene38274:CDS |
| CATGCTGAGCTACCAACAGG+AGG | 0.671949 | 5.3:-77761314 | MS.gene38274:CDS |
| CTGAATGCGAACAAATATAG+CGG | 0.692980 | 5.3:+77761022 | None:intergenic |
| TCAAGCATGAGATTCTTGTG+GGG | 0.732179 | 5.3:+77762458 | None:intergenic |
| TTACCTTAAAACTTTCTACG+AGG | 0.733422 | 5.3:-77761144 | MS.gene38274:CDS |
| CGGTTGGAGATGCAACACTG+CGG | 0.782235 | 5.3:+77761042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGTTATGTTATTTTATT+AGG | - | chr5.3:77761058-77761077 | MS.gene38274:CDS | 10.0% |
| !! | ATTATGTTTCTTCAACATAA+GGG | + | chr5.3:77761581-77761600 | None:intergenic | 20.0% |
| !! | TATACTCTAACATGAAAATA+TGG | + | chr5.3:77761010-77761029 | None:intergenic | 20.0% |
| !! | TCATATAACAAAACAATCAA+TGG | + | chr5.3:77761794-77761813 | None:intergenic | 20.0% |
| !! | TTCATGTTAGAGTATATATT+TGG | - | chr5.3:77761014-77761033 | MS.gene38274:CDS | 20.0% |
| !! | TTTAAAAGCAAAAAGTAGAA+AGG | + | chr5.3:77760984-77761003 | None:intergenic | 20.0% |
| ! | AAAAGTAGAAAGGAAATTAC+AGG | + | chr5.3:77760974-77760993 | None:intergenic | 25.0% |
| ! | AAAGTAGAAAGGAAATTACA+GGG | + | chr5.3:77760973-77760992 | None:intergenic | 25.0% |
| ! | ATCATTTGAACTGTTAAGAT+AGG | + | chr5.3:77762008-77762027 | None:intergenic | 25.0% |
| ! | ATGCAAATAACCAAATTAAG+TGG | + | chr5.3:77761230-77761249 | None:intergenic | 25.0% |
| ! | CATTATGTTTCTTCAACATA+AGG | + | chr5.3:77761582-77761601 | None:intergenic | 25.0% |
| ! | CTATCTAACTATCTACAAAT+AGG | - | chr5.3:77761505-77761524 | MS.gene38274:intron | 25.0% |
| ! | TATATATTTGGTTGAGAACT+AGG | - | chr5.3:77761026-77761045 | MS.gene38274:CDS | 25.0% |
| ! | TTCCTTAATTGTGATTGTTT+GGG | - | chr5.3:77761422-77761441 | MS.gene38274:intron | 25.0% |
| ! | TTTAGAGAACTGAATCAAAT+TGG | - | chr5.3:77761314-77761333 | MS.gene38274:CDS | 25.0% |
| !! | TCTCAGATAGATTTTGTAAT+GGG | - | chr5.3:77761923-77761942 | MS.gene38274:intron | 25.0% |
| !!! | TAGAAAGTTTTAAGGTAATC+TGG | + | chr5.3:77762124-77762143 | None:intergenic | 25.0% |
| !!! | TATTTTTCCATTAGTTCTCT+AGG | - | chr5.3:77761721-77761740 | MS.gene38274:intron | 25.0% |
| AACAGTAAAATACTCCTTGA+TGG | + | chr5.3:77762518-77762537 | None:intergenic | 30.0% | |
| AAGTAGAAAGGAAATTACAG+GGG | + | chr5.3:77760972-77760991 | None:intergenic | 30.0% | |
| AGAACAAGAATTAGCATTGT+TGG | + | chr5.3:77762067-77762086 | None:intergenic | 30.0% | |
| ATTCAGACAGAAAATGATGA+AGG | - | chr5.3:77762265-77762284 | MS.gene38274:intron | 30.0% | |
| CAATACTATAAGAGCAAGAA+TGG | - | chr5.3:77760902-77760921 | MS.gene38274:CDS | 30.0% | |
| CATTAGAAACAAGACTATTG+AGG | - | chr5.3:77762429-77762448 | MS.gene38274:CDS | 30.0% | |
| GAAGAAACATAATGTTCATG+AGG | - | chr5.3:77761588-77761607 | MS.gene38274:intron | 30.0% | |
| GCTTATCTGATAAAAAGAGA+TGG | - | chr5.3:77762403-77762422 | MS.gene38274:CDS | 30.0% | |
| GTGATTTCAACCACTTAATT+TGG | - | chr5.3:77761217-77761236 | MS.gene38274:CDS | 30.0% | |
| GTTCCTTAATTGTGATTGTT+TGG | - | chr5.3:77761421-77761440 | MS.gene38274:intron | 30.0% | |
| TACCCAAACAATCACAATTA+AGG | + | chr5.3:77761427-77761446 | None:intergenic | 30.0% | |
| TCAAATAAGCTAATCCAAAC+AGG | + | chr5.3:77761614-77761633 | None:intergenic | 30.0% | |
| TTACCTTAAAACTTTCTACG+AGG | - | chr5.3:77762126-77762145 | MS.gene38274:intron | 30.0% | |
| ! | CTCTTATAGTATTGAACATC+AGG | + | chr5.3:77760896-77760915 | None:intergenic | 30.0% |
| ! | GTCTCAGATAGATTTTGTAA+TGG | - | chr5.3:77761922-77761941 | MS.gene38274:intron | 30.0% |
| ! | TTATAGTATTGAACATCAGG+TGG | + | chr5.3:77760893-77760912 | None:intergenic | 30.0% |
| AAAAGCGAAGAAGTGACATA+AGG | + | chr5.3:77762205-77762224 | None:intergenic | 35.0% | |
| AAGCTATCCTAGAGAACTAA+TGG | + | chr5.3:77761731-77761750 | None:intergenic | 35.0% | |
| ACACTAAACTCGATACACAT+AGG | - | chr5.3:77762149-77762168 | MS.gene38274:intron | 35.0% | |
| AGAAGCTGCAAAACAGATAT+TGG | - | chr5.3:77762489-77762508 | MS.gene38274:CDS | 35.0% | |
| ATCAAGCATGAGATTCTTGT+GGG | + | chr5.3:77760816-77760835 | None:intergenic | 35.0% | |
| ATCAGCTCGAACACAAAATT+TGG | + | chr5.3:77762034-77762053 | None:intergenic | 35.0% | |
| CAAGTTGTTTATCCAACACA+TGG | - | chr5.3:77761841-77761860 | MS.gene38274:intron | 35.0% | |
| CATGTGTTGGATAAACAACT+TGG | + | chr5.3:77761843-77761862 | None:intergenic | 35.0% | |
| CTGAATGCGAACAAATATAG+CGG | + | chr5.3:77762251-77762270 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTACATAC+TGG | - | chr5.3:77761624-77761643 | MS.gene38274:intron | 35.0% | |
| TTACTAACTACTCACCTTAG+AGG | + | chr5.3:77761177-77761196 | None:intergenic | 35.0% | |
| ! | AAGACTATTGAGGTTGATCT+TGG | - | chr5.3:77762439-77762458 | MS.gene38274:CDS | 35.0% |
| ! | AATATCTGTTTTGCAGCTTC+TGG | + | chr5.3:77762490-77762509 | None:intergenic | 35.0% |
| ! | TAGAGTGTCTAAAGTGAGTT+TGG | + | chr5.3:77761140-77761159 | None:intergenic | 35.0% |
| ! | TGTCCTCGTAGAAAGTTTTA+AGG | + | chr5.3:77762132-77762151 | None:intergenic | 35.0% |
| !! | AGATTTTGTAATGGGAAGCT+GGG | - | chr5.3:77761931-77761950 | MS.gene38274:intron | 35.0% |
| !! | TAGATTTTGTAATGGGAAGC+TGG | - | chr5.3:77761930-77761949 | MS.gene38274:intron | 35.0% |
| ACAGATATTGGAAGCCATCA+AGG | - | chr5.3:77762501-77762520 | MS.gene38274:CDS | 40.0% | |
| ACCATAACTAGACCATGTGT+TGG | + | chr5.3:77761856-77761875 | None:intergenic | 40.0% | |
| ATATCTAGTGATCCTCCTGT+TGG | + | chr5.3:77761971-77761990 | None:intergenic | 40.0% | |
| ATCTACCAACCAGTGAATCA+AGG | + | chr5.3:77761395-77761414 | None:intergenic | 40.0% | |
| ATCTTGGTTCAAGCTTTCCA+AGG | - | chr5.3:77762455-77762474 | MS.gene38274:CDS | 40.0% | |
| ATGCGAACAAATATAGCGGT+TGG | + | chr5.3:77762247-77762266 | None:intergenic | 40.0% | |
| CCGATTTCAAAGCAAGTGTT+GGG | - | chr5.3:77762325-77762344 | MS.gene38274:CDS | 40.0% | |
| CTCGAAAAGACCTTGTTCTT+TGG | - | chr5.3:77762098-77762117 | MS.gene38274:intron | 40.0% | |
| GATCAAGCATGAGATTCTTG+TGG | + | chr5.3:77760817-77760836 | None:intergenic | 40.0% | |
| TAAACTCGATACACATAGGC+AGG | - | chr5.3:77762153-77762172 | MS.gene38274:intron | 40.0% | |
| TAATGTTCATGAGGCCTGTT+TGG | - | chr5.3:77761597-77761616 | MS.gene38274:intron | 40.0% | |
| TCAACCATGTTTCTCCTCTA+AGG | - | chr5.3:77761160-77761179 | MS.gene38274:CDS | 40.0% | |
| TCAAGCATGAGATTCTTGTG+GGG | + | chr5.3:77760815-77760834 | None:intergenic | 40.0% | |
| TCAAGCTTTCCAAGGTTGTT+TGG | - | chr5.3:77762463-77762482 | MS.gene38274:CDS | 40.0% | |
| TCCAACACATGGTCTAGTTA+TGG | - | chr5.3:77761852-77761871 | MS.gene38274:intron | 40.0% | |
| TTAGCATTGTTGGACTGCTT+CGG | + | chr5.3:77762057-77762076 | None:intergenic | 40.0% | |
| ! | CAAAGAACAAGGTCTTTTCG+AGG | + | chr5.3:77762100-77762119 | None:intergenic | 40.0% |
| ! | CGATTTCAAAGCAAGTGTTG+GGG | - | chr5.3:77762326-77762345 | MS.gene38274:CDS | 40.0% |
| ! | GCAAGGTCGTAGCAAATTTT+TGG | - | chr5.3:77760769-77760788 | MS.gene38274:CDS | 40.0% |
| !! | CCAACACTTGCTTTGAAATC+GGG | + | chr5.3:77762327-77762346 | None:intergenic | 40.0% |
| !! | CCCAACACTTGCTTTGAAAT+CGG | + | chr5.3:77762328-77762347 | None:intergenic | 40.0% |
| !! | GGCTTTGGAAAAAATTCCAG+AGG | - | chr5.3:77762174-77762193 | MS.gene38274:intron | 40.0% |
| ACATCAGGTGGAAGTGAACA+AGG | + | chr5.3:77760881-77760900 | None:intergenic | 45.0% | |
| ATGGATACCCAGAAGAAGCA+AGG | - | chr5.3:77760752-77760771 | MS.gene38274:CDS | 45.0% | |
| CAACCAGTGAATCAAGGCTT+AGG | + | chr5.3:77761389-77761408 | None:intergenic | 45.0% | |
| CCCGATTTCAAAGCAAGTGT+TGG | - | chr5.3:77762324-77762343 | MS.gene38274:CDS | 45.0% | |
| CTAAGCCTTGATTCACTGGT+TGG | - | chr5.3:77761387-77761406 | MS.gene38274:intron | 45.0% | |
| CTCACCTTAGAGGAGAAACA+TGG | + | chr5.3:77761167-77761186 | None:intergenic | 45.0% | |
| GGTAATCTGGCCAAAGAACA+AGG | + | chr5.3:77762111-77762130 | None:intergenic | 45.0% | |
| GTGACATAAGGTTGAACCTC+TGG | + | chr5.3:77762193-77762212 | None:intergenic | 45.0% | |
| TAGCCTAAGCCTTGATTCAC+TGG | - | chr5.3:77761383-77761402 | MS.gene38274:intron | 45.0% | |
| TTCCTCTCCTACTTCTCTCT+CGG | + | chr5.3:77762377-77762396 | None:intergenic | 45.0% | |
| !! | AGAACAAGGTCTTTTCGAGG+TGG | + | chr5.3:77762097-77762116 | None:intergenic | 45.0% |
| !! | CAAAGCAAGTGTTGGGGATA+TGG | - | chr5.3:77762332-77762351 | MS.gene38274:CDS | 45.0% |
| !! | TTGTGGGGTGCTGAAACAAA+TGG | + | chr5.3:77760800-77760819 | None:intergenic | 45.0% |
| !!! | ATTATTTTAATTACTTATTA+AGG | - | chr5.3:77761467-77761486 | MS.gene38274:intron | 5.0% |
| CGATACACATAGGCAGGCTT+TGG | - | chr5.3:77762159-77762178 | MS.gene38274:intron | 50.0% | |
| GCTACGACCTTGCTTCTTCT+GGG | + | chr5.3:77760762-77760781 | None:intergenic | 50.0% | |
| GCTTCTGGACCAAACAACCT+TGG | + | chr5.3:77762475-77762494 | None:intergenic | 50.0% | |
| TCCTACTTCTCTCTCGGAAC+AGG | + | chr5.3:77762371-77762390 | None:intergenic | 50.0% | |
| TGCTACGACCTTGCTTCTTC+TGG | + | chr5.3:77760763-77760782 | None:intergenic | 50.0% | |
| TTCCGAGAGAGAAGTAGGAG+AGG | - | chr5.3:77762372-77762391 | MS.gene38274:CDS | 50.0% | |
| ! | ACAGGGGAATCAGTGTTGCT+TGG | + | chr5.3:77760956-77760975 | None:intergenic | 50.0% |
| !! | GCAAGTGTTGGGGATATGGT+TGG | - | chr5.3:77762336-77762355 | MS.gene38274:CDS | 50.0% |
| CATGCTGAGCTACCAACAGG+AGG | - | chr5.3:77761956-77761975 | MS.gene38274:intron | 55.0% | |
| CGGTTGGAGATGCAACACTG+CGG | + | chr5.3:77762231-77762250 | None:intergenic | 55.0% | |
| GCCTGTTCCGAGAGAGAAGT+AGG | - | chr5.3:77762367-77762386 | MS.gene38274:CDS | 55.0% | |
| GTGCATGCTGAGCTACCAAC+AGG | - | chr5.3:77761953-77761972 | MS.gene38274:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77760752 | 77762540 | 77760752 | ID=MS.gene38274 |
| chr5.3 | mRNA | 77760752 | 77762540 | 77760752 | ID=MS.gene38274.t1;Parent=MS.gene38274 |
| chr5.3 | exon | 77762319 | 77762540 | 77762319 | ID=MS.gene38274.t1.exon1;Parent=MS.gene38274.t1 |
| chr5.3 | CDS | 77762319 | 77762540 | 77762319 | ID=cds.MS.gene38274.t1;Parent=MS.gene38274.t1 |
| chr5.3 | exon | 77760752 | 77761363 | 77760752 | ID=MS.gene38274.t1.exon2;Parent=MS.gene38274.t1 |
| chr5.3 | CDS | 77760752 | 77761363 | 77760752 | ID=cds.MS.gene38274.t1;Parent=MS.gene38274.t1 |
| Gene Sequence |
| Protein sequence |
