AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39552.t1 MTR_4g087965 97.792 317 7 0 1 317 30 346 0.0 652
MS.gene39552.t1 MTR_7g029030 49.175 303 145 4 12 314 24 317 7.16e-95 284
MS.gene39552.t1 MTR_1g090760 43.709 302 168 2 12 313 27 326 4.74e-90 272
MS.gene39552.t1 MTR_8g062780 44.040 302 166 2 12 313 22 320 1.44e-86 263
MS.gene39552.t1 MTR_1g009750 43.791 306 165 4 12 315 26 326 4.75e-85 259
MS.gene39552.t1 MTR_4g127670 45.246 305 158 4 12 314 23 320 1.14e-84 258
MS.gene39552.t1 MTR_5g016010 42.857 308 166 5 12 315 26 327 3.89e-83 254
MS.gene39552.t1 MTR_4g095450 43.831 308 158 6 12 315 26 322 6.30e-82 251
MS.gene39552.t1 MTR_0286s0010 42.295 305 166 7 12 313 33 330 1.79e-81 250
MS.gene39552.t1 MTR_6g008075 42.295 305 166 7 12 313 33 330 1.79e-81 250
MS.gene39552.t1 MTR_2g029815 43.137 306 167 5 12 315 28 328 1.15e-78 244
MS.gene39552.t1 MTR_2g088770 42.157 306 168 6 12 315 25 323 5.22e-78 241
MS.gene39552.t1 MTR_2g029820 43.137 306 167 5 12 315 28 328 5.77e-78 242
MS.gene39552.t1 MTR_4g046713 41.639 305 171 5 12 315 26 324 4.23e-76 236
MS.gene39552.t1 MTR_2g437770 42.395 309 165 5 7 315 44 339 4.98e-76 236
MS.gene39552.t1 MTR_6g027440 44.371 302 157 6 12 313 20 310 5.28e-76 236
MS.gene39552.t1 MTR_2g029830 42.345 307 168 6 12 315 27 327 1.38e-75 236
MS.gene39552.t1 MTR_7g107520 41.254 303 169 6 13 315 25 318 5.48e-74 231
MS.gene39552.t1 MTR_1g025980 40.635 315 177 6 1 315 12 316 6.83e-74 230
MS.gene39552.t1 MTR_1g101830 40.066 302 172 5 12 313 26 318 8.58e-74 230
MS.gene39552.t1 MTR_7g086870 42.193 301 159 6 13 313 22 307 1.00e-73 229
MS.gene39552.t1 MTR_8g075100 41.528 301 165 6 13 313 26 315 1.15e-73 229
MS.gene39552.t1 MTR_2g029800 42.157 306 170 5 12 315 28 328 1.78e-73 230
MS.gene39552.t1 MTR_7g086820 42.193 301 162 6 13 313 20 308 2.60e-73 229
MS.gene39552.t1 MTR_6g043240 40.000 305 168 5 11 315 40 329 3.24e-73 229
MS.gene39552.t1 MTR_2g029750 42.810 306 168 5 12 315 28 328 3.82e-73 229
MS.gene39552.t1 MTR_7g093370 40.984 305 172 6 12 313 68 367 6.03e-73 229
MS.gene39552.t1 MTR_3g092990 41.060 302 174 3 12 313 25 322 1.02e-72 228
MS.gene39552.t1 MTR_1g009750 40.461 304 161 5 12 315 26 309 1.05e-72 227
MS.gene39552.t1 MTR_2g029730 40.717 307 173 6 12 315 24 324 3.27e-72 227
MS.gene39552.t1 MTR_5g022870 41.639 305 163 7 11 313 21 312 4.32e-72 226
MS.gene39552.t1 MTR_2g008710 42.434 304 161 6 15 314 29 322 4.60e-72 226
MS.gene39552.t1 MTR_1g038680 42.384 302 169 5 15 314 31 329 7.49e-72 225
MS.gene39552.t1 MTR_5g021060 40.584 308 177 5 7 313 24 326 1.90e-71 224
MS.gene39552.t1 MTR_3g094650 41.254 303 166 5 12 313 27 318 4.21e-71 223
MS.gene39552.t1 MTR_4g133800 41.528 301 164 6 14 314 42 330 7.57e-71 223
MS.gene39552.t1 MTR_2g029850 40.196 306 176 5 12 315 28 328 1.38e-70 223
MS.gene39552.t1 MTR_5g074970 44.590 305 155 6 12 313 29 322 1.47e-70 222
MS.gene39552.t1 MTR_1g054205 40.132 304 176 5 12 313 23 322 2.51e-70 221
MS.gene39552.t1 MTR_5g017850 38.636 308 184 4 6 313 20 322 2.72e-70 221
MS.gene39552.t1 MTR_2g029740 41.503 306 172 5 12 315 28 328 3.40e-70 222
MS.gene39552.t1 MTR_6g043280 39.935 308 172 5 8 315 36 330 3.63e-70 221
MS.gene39552.t1 MTR_1g077000 42.193 301 158 8 13 313 39 323 1.42e-69 219
MS.gene39552.t1 MTR_4g132490 39.934 303 176 3 12 314 28 324 2.16e-69 219
MS.gene39552.t1 MTR_4g030890 40.984 305 156 8 17 313 104 392 3.94e-69 221
MS.gene39552.t1 MTR_5g017860 38.636 308 184 4 6 313 20 322 4.87e-69 218
MS.gene39552.t1 MTR_4g031140 40.984 305 156 8 17 313 32 320 6.27e-69 218
MS.gene39552.t1 MTR_2g028980 41.042 307 172 6 12 315 28 328 7.59e-69 218
MS.gene39552.t1 MTR_2g029560 38.562 306 181 5 12 315 23 323 8.83e-69 218
MS.gene39552.t1 MTR_6g043460 40.264 303 169 5 11 313 34 324 3.89e-68 216
MS.gene39552.t1 MTR_4g029170 41.587 315 170 7 1 313 15 317 4.01e-68 216
MS.gene39552.t1 MTR_2g029860 39.016 305 179 5 12 314 28 327 1.06e-67 216
MS.gene39552.t1 MTR_4g114210 41.720 314 168 7 6 314 14 317 1.28e-67 214
MS.gene39552.t1 MTR_2g029910 39.216 306 180 4 12 315 29 330 4.99e-67 214
MS.gene39552.t1 MTR_2g084080 40.132 304 170 6 12 315 24 315 7.33e-67 212
MS.gene39552.t1 MTR_3g466200 42.951 305 159 7 12 313 24 316 1.06e-66 212
MS.gene39552.t1 MTR_8g076820 40.940 298 170 6 17 313 34 326 1.23e-66 212
MS.gene39552.t1 MTR_4g029180 42.667 300 158 7 16 313 30 317 1.32e-66 212
MS.gene39552.t1 MTR_2g084110 40.132 304 170 6 12 315 24 315 1.51e-66 211
MS.gene39552.t1 MTR_2g084020 39.672 305 171 7 12 315 24 316 2.53e-66 211
MS.gene39552.t1 MTR_7g072510 38.689 305 175 5 9 313 16 308 2.97e-66 210
MS.gene39552.t1 MTR_2g040000 40.584 308 169 6 12 313 28 327 2.98e-66 211
MS.gene39552.t1 MTR_1g022970 39.934 303 175 5 13 313 46 343 3.06e-66 211
MS.gene39552.t1 MTR_4g125940 40.323 310 172 7 9 313 24 325 3.42e-66 211
MS.gene39552.t1 MTR_7g072480 39.672 305 172 5 9 313 20 312 3.92e-66 210
MS.gene39552.t1 MTR_5g083860 39.604 303 171 5 12 313 30 321 8.43e-66 210
MS.gene39552.t1 MTR_2g084000 39.610 308 173 7 9 315 22 317 1.93e-65 209
MS.gene39552.t1 MTR_3g072190 40.594 303 168 5 11 313 24 314 2.09e-65 208
MS.gene39552.t1 MTR_4g122640 40.264 303 171 7 13 313 38 332 3.85e-65 208
MS.gene39552.t1 MTR_0155s0040 39.867 301 165 8 13 313 27 311 3.99e-65 207
MS.gene39552.t1 MTR_1g086490 39.009 323 181 7 4 315 21 338 1.01e-64 207
MS.gene39552.t1 MTR_1g066710 36.513 304 181 5 12 313 26 319 4.21e-64 205
MS.gene39552.t1 MTR_5g049280 37.255 306 184 5 12 313 32 333 5.51e-64 205
MS.gene39552.t1 MTR_2g084090 38.816 304 175 5 12 315 24 316 5.91e-64 205
MS.gene39552.t1 MTR_2g084010 39.672 305 171 7 12 315 24 316 8.08e-64 204
MS.gene39552.t1 MTR_5g014100 40.063 317 179 6 3 313 16 327 1.30e-63 204
MS.gene39552.t1 MTR_4g083710 40.850 306 168 6 12 314 26 321 3.88e-63 203
MS.gene39552.t1 MTR_3g105790 37.742 310 182 4 7 314 19 319 3.88e-63 203
MS.gene39552.t1 MTR_1g086320 39.032 310 176 8 12 315 29 331 4.21e-63 203
MS.gene39552.t1 MTR_3g092990 39.073 302 169 4 12 313 25 311 2.06e-62 201
MS.gene39552.t1 MTR_2g029830 42.529 261 141 6 58 315 5 259 3.69e-62 199
MS.gene39552.t1 MTR_5g074710 40.717 307 164 9 12 313 24 317 5.00e-62 200
MS.gene39552.t1 MTR_5g074760 40.391 307 165 9 12 313 24 317 2.59e-61 198
MS.gene39552.t1 MTR_3g094670 39.604 303 171 5 12 313 27 318 5.64e-61 197
MS.gene39552.t1 MTR_4g125940 42.545 275 145 7 44 313 4 270 5.92e-61 196
MS.gene39552.t1 MTR_4g029190 40.000 300 166 6 17 314 50 337 6.14e-61 197
MS.gene39552.t1 MTR_5g074740 40.065 307 166 9 12 313 24 317 1.07e-60 196
MS.gene39552.t1 MTR_3g467600 37.700 313 178 8 6 313 20 320 1.81e-60 196
MS.gene39552.t1 MTR_2g067440 35.000 340 186 6 4 314 51 384 2.50e-60 197
MS.gene39552.t1 MTR_1g066380 35.855 304 183 5 12 313 26 319 3.04e-60 195
MS.gene39552.t1 MTR_4g029200 38.944 303 173 5 12 314 45 335 3.74e-60 196
MS.gene39552.t1 MTR_3g094630 40.264 303 169 5 12 313 27 318 6.01e-60 194
MS.gene39552.t1 MTR_1g066640 35.855 304 183 5 12 313 26 319 1.05e-59 194
MS.gene39552.t1 MTR_2g078610 35.843 332 179 6 13 314 76 403 1.67e-59 196
MS.gene39552.t1 MTR_4g132110 35.410 305 185 5 13 315 32 326 2.28e-59 193
MS.gene39552.t1 MTR_2g077990 36.036 333 179 6 12 314 75 403 2.81e-59 195
MS.gene39552.t1 MTR_2g099175 37.582 306 178 6 12 313 35 331 6.36e-59 192
MS.gene39552.t1 MTR_2g078280 35.625 320 173 5 12 301 75 391 1.15e-57 191
MS.gene39552.t1 MTR_4g132110 35.484 310 183 7 13 315 32 331 2.16e-57 188
MS.gene39552.t1 MTR_2g008160 38.961 308 173 6 12 314 23 320 2.52e-57 188
MS.gene39552.t1 MTR_5g074860 37.188 320 181 10 1 313 15 321 3.48e-57 187
MS.gene39552.t1 MTR_5g033470 36.190 315 193 7 3 313 63 373 4.60e-57 189
MS.gene39552.t1 MTR_1g115900 37.049 305 176 8 12 313 26 317 1.19e-55 184
MS.gene39552.t1 MTR_7g026990 37.748 302 165 7 17 313 35 318 2.27e-55 183
MS.gene39552.t1 MTR_4g074995 39.542 306 159 7 12 314 23 305 2.59e-55 182
MS.gene39552.t1 MTR_1g066680 35.197 304 184 6 12 313 26 318 2.83e-55 182
MS.gene39552.t1 MTR_2g008730 37.829 304 151 6 15 314 29 298 5.79e-55 181
MS.gene39552.t1 MTR_3g466180 37.417 302 177 5 12 313 30 319 6.26e-53 176
MS.gene39552.t1 MTR_4g074990 37.377 305 164 6 12 314 23 302 1.54e-52 175
MS.gene39552.t1 MTR_3g072190 41.085 258 140 5 56 313 2 247 1.70e-52 173
MS.gene39552.t1 MTR_2g067450 34.853 307 185 6 13 314 11 307 6.75e-51 171
MS.gene39552.t1 MTR_0147s0010 33.231 325 172 6 13 314 77 379 2.37e-47 164
MS.gene39552.t1 MTR_3g105790 41.048 229 131 3 88 314 17 243 3.30e-47 159
MS.gene39552.t1 MTR_4g074980 39.749 239 133 4 12 248 24 253 9.43e-47 158
MS.gene39552.t1 MTR_1g066380 35.135 259 156 5 57 313 3 251 5.32e-45 154
MS.gene39552.t1 MTR_2g008160 34.416 308 152 6 12 314 23 285 2.32e-43 150
MS.gene39552.t1 MTR_4g074980 44.681 188 101 2 12 199 24 208 2.79e-43 150
MS.gene39552.t1 MTR_2g008160 42.640 197 96 3 12 208 23 202 3.80e-43 147
MS.gene39552.t1 MTR_5g074700 37.719 228 117 8 89 313 5 210 1.36e-35 128
MS.gene39552.t1 MTR_5g074860 30.938 320 162 10 1 313 15 282 7.02e-34 125
MS.gene39552.t1 MTR_2g029880 36.979 192 107 5 126 315 7 186 9.89e-31 115
MS.gene39552.t1 MTR_3g072210 37.566 189 107 5 127 313 55 234 2.34e-30 115
MS.gene39552.t1 MTR_7g086790 38.624 189 90 6 60 248 17 179 1.67e-26 103
MS.gene39552.t1 MTR_7g072490 31.646 237 97 5 59 295 2 173 4.92e-25 100
MS.gene39552.t1 MTR_2g078560 30.000 220 123 4 125 314 99 317 1.34e-23 99.0
MS.gene39552.t1 MTR_3g072260 45.133 113 59 2 11 123 24 133 1.59e-23 94.4
MS.gene39552.t1 MTR_2g077980 29.412 289 158 10 64 314 1 281 2.28e-23 97.8
MS.gene39552.t1 MTR_5g058120 35.583 163 92 3 151 313 6 155 3.29e-21 91.3
MS.gene39552.t1 MTR_6g048160 58.108 74 24 3 52 125 22 88 5.60e-17 75.1
MS.gene39552.t1 MTR_4g114220 48.315 89 33 3 37 125 27 102 2.29e-16 75.1
MS.gene39552.t1 MTR_3g462850 31.159 138 90 3 180 313 9 145 3.28e-16 75.1
MS.gene39552.t1 MTR_1g089005 41.739 115 57 3 13 121 15 125 3.08e-15 72.4
MS.gene39552.t1 MTR_7g086810 33.058 121 52 1 13 133 6 97 1.73e-13 69.3
MS.gene39552.t1 MTR_4g031040 31.200 125 68 3 126 250 25 131 3.18e-13 66.2
MS.gene39552.t1 MTR_4g012865 50.000 54 27 0 13 66 77 130 3.94e-13 66.6
MS.gene39552.t1 MTR_7g086785 40.698 86 47 1 59 144 4 85 4.10e-13 65.9
MS.gene39552.t1 MTR_1g098320 43.590 78 43 1 239 316 47 123 1.19e-12 64.7
MS.gene39552.t1 MTR_3g088160 28.571 196 113 5 107 296 178 352 5.00e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39552.t1 AT2G34060 65.147 307 107 0 11 317 40 346 5.77e-155 437
MS.gene39552.t1 AT5G14130 48.408 314 156 3 1 314 20 327 4.23e-96 287
MS.gene39552.t1 AT5G14130 48.408 314 156 3 1 314 61 368 1.42e-95 288
MS.gene39552.t1 AT2G18980 48.197 305 148 4 12 314 24 320 1.64e-91 275
MS.gene39552.t1 AT1G24110 45.741 317 166 5 1 316 10 321 1.02e-90 273
MS.gene39552.t1 AT5G67400 46.382 304 157 4 12 313 26 325 3.56e-88 267
MS.gene39552.t1 AT4G17690 43.750 304 163 3 10 313 23 318 8.71e-88 266
MS.gene39552.t1 AT4G30170 45.902 305 155 4 12 314 26 322 3.21e-87 265
MS.gene39552.t1 AT4G37520 45.752 306 156 5 12 313 26 325 2.93e-86 262
MS.gene39552.t1 AT5G47000 45.183 301 158 3 13 313 33 326 3.76e-85 259
MS.gene39552.t1 AT4G37530 46.078 306 155 5 12 313 26 325 4.56e-85 259
MS.gene39552.t1 AT4G37520 45.098 306 155 6 12 313 26 322 6.38e-83 254
MS.gene39552.t1 AT3G49960 43.464 306 163 5 12 313 26 325 8.16e-81 248
MS.gene39552.t1 AT3G28200 41.060 302 169 3 12 313 20 312 5.00e-80 246
MS.gene39552.t1 AT5G40150 40.397 302 172 3 12 313 31 324 7.54e-80 246
MS.gene39552.t1 AT4G33420 45.875 303 148 8 11 313 35 321 2.45e-76 237
MS.gene39552.t1 AT4G37530 46.947 262 130 4 12 269 26 282 9.40e-76 234
MS.gene39552.t1 AT4G33420 45.875 303 148 8 11 313 82 368 1.28e-75 236
MS.gene39552.t1 AT1G05260 42.071 309 170 6 9 315 22 323 1.46e-75 235
MS.gene39552.t1 AT3G03670 40.984 305 168 5 12 313 22 317 1.83e-75 234
MS.gene39552.t1 AT4G36430 40.604 298 171 5 17 313 34 326 7.30e-74 231
MS.gene39552.t1 AT5G51890 43.357 286 151 6 13 295 26 303 1.67e-73 229
MS.gene39552.t1 AT5G17820 39.735 302 167 5 12 313 23 309 3.48e-73 228
MS.gene39552.t1 AT5G66390 40.268 298 172 5 17 313 37 329 4.82e-72 226
MS.gene39552.t1 AT5G17820 39.735 302 167 5 12 313 76 362 7.35e-72 227
MS.gene39552.t1 AT5G06720 40.132 304 175 6 12 313 31 329 9.55e-72 225
MS.gene39552.t1 AT1G71695 41.772 316 165 7 4 314 35 336 1.76e-71 225
MS.gene39552.t1 AT2G18150 39.262 298 175 6 17 313 40 332 2.20e-71 224
MS.gene39552.t1 AT4G08770 41.830 306 169 6 12 313 23 323 2.43e-71 224
MS.gene39552.t1 AT4G31760 41.176 306 167 5 12 314 28 323 4.50e-71 223
MS.gene39552.t1 AT5G06730 39.145 304 178 5 12 313 32 330 6.15e-71 224
MS.gene39552.t1 AT1G49570 39.414 307 180 4 9 313 44 346 7.13e-71 224
MS.gene39552.t1 AT3G21770 40.196 306 174 6 12 315 28 326 7.57e-71 223
MS.gene39552.t1 AT2G18140 38.158 304 182 6 11 313 33 331 1.52e-70 222
MS.gene39552.t1 AT4G08780 41.503 306 170 6 12 313 23 323 1.89e-70 222
MS.gene39552.t1 AT2G38390 39.672 305 176 6 12 313 30 329 4.38e-70 221
MS.gene39552.t1 AT4G11290 39.542 306 178 6 12 315 24 324 5.76e-70 221
MS.gene39552.t1 AT5G19880 40.000 305 177 5 12 313 24 325 1.07e-69 220
MS.gene39552.t1 AT2G39040 39.103 312 182 6 8 315 41 348 1.79e-69 220
MS.gene39552.t1 AT1G44970 40.468 299 171 5 17 313 49 342 2.60e-69 219
MS.gene39552.t1 AT3G32980 39.542 306 176 6 12 313 30 330 4.69e-69 219
MS.gene39552.t1 AT1G05240 38.710 310 179 5 9 315 22 323 5.76e-69 218
MS.gene39552.t1 AT1G05250 38.710 310 179 5 9 315 22 323 5.76e-69 218
MS.gene39552.t1 AT5G05340 39.542 306 173 5 9 313 26 320 8.34e-69 218
MS.gene39552.t1 AT5G22410 41.176 306 165 8 12 313 27 321 8.60e-69 218
MS.gene39552.t1 AT3G50990 39.744 312 178 8 5 313 33 337 8.66e-69 218
MS.gene39552.t1 AT5G64110 41.860 301 161 7 17 314 38 327 1.05e-68 217
MS.gene39552.t1 AT5G64120 39.333 300 171 5 15 314 37 325 1.40e-68 217
MS.gene39552.t1 AT3G49110 39.869 306 175 6 12 313 32 332 1.54e-68 218
MS.gene39552.t1 AT4G16270 41.311 305 169 7 13 315 50 346 1.61e-68 218
MS.gene39552.t1 AT3G49120 39.869 306 175 6 12 313 31 331 1.76e-68 218
MS.gene39552.t1 AT2G24800 40.385 312 162 5 12 314 30 326 2.08e-68 216
MS.gene39552.t1 AT5G19890 41.694 307 162 7 12 313 29 323 3.94e-68 216
MS.gene39552.t1 AT1G30870 42.105 304 162 6 13 314 51 342 7.12e-67 213
MS.gene39552.t1 AT2G41480 41.368 307 165 6 13 314 29 325 7.64e-67 213
MS.gene39552.t1 AT2G38380 39.016 305 178 6 12 313 30 329 1.23e-66 213
MS.gene39552.t1 AT5G42180 39.236 288 169 4 11 298 21 302 1.38e-66 211
MS.gene39552.t1 AT2G22420 39.667 300 167 8 17 313 27 315 2.01e-66 211
MS.gene39552.t1 AT4G26010 40.000 305 160 8 12 313 21 305 5.39e-65 207
MS.gene39552.t1 AT4G26010 40.000 305 160 8 12 313 49 333 6.29e-65 208
MS.gene39552.t1 AT3G17070 39.130 299 168 7 13 305 38 328 1.03e-63 205
MS.gene39552.t1 AT3G01190 38.944 303 172 8 13 313 26 317 2.59e-63 203
MS.gene39552.t1 AT1G14540 38.158 304 176 6 12 314 20 312 6.34e-63 202
MS.gene39552.t1 AT4G25980 38.312 308 176 6 12 314 25 323 8.48e-63 202
MS.gene39552.t1 AT5G64100 38.284 303 171 6 15 314 39 328 1.13e-62 202
MS.gene39552.t1 AT5G24070 38.710 310 174 8 10 313 32 331 3.79e-62 201
MS.gene39552.t1 AT5G58400 41.118 304 166 7 12 313 29 321 3.84e-62 200
MS.gene39552.t1 AT1G68850 37.013 308 181 6 13 313 30 331 3.95e-62 201
MS.gene39552.t1 AT1G14550 39.869 306 171 7 12 315 25 319 6.40e-62 199
MS.gene39552.t1 AT1G77100 38.961 308 169 9 12 314 23 316 1.51e-61 199
MS.gene39552.t1 AT5G58390 40.461 304 168 6 12 313 20 312 3.35e-61 197
MS.gene39552.t1 AT5G39580 38.870 301 172 8 15 314 27 316 3.98e-61 197
MS.gene39552.t1 AT5G15180 36.482 307 180 6 13 315 32 327 4.43e-61 197
MS.gene39552.t1 AT4G33870 33.631 336 184 4 13 314 68 398 2.60e-60 198
MS.gene39552.t1 AT4G21960 35.738 305 184 5 13 315 31 325 3.25e-60 196
MS.gene39552.t1 AT2G43480 36.893 309 179 8 11 313 33 331 1.86e-57 189
MS.gene39552.t1 AT2G37130 33.770 305 189 5 12 313 29 323 3.04e-57 188
MS.gene39552.t1 AT2G37130 33.775 302 187 5 15 313 1 292 9.01e-57 186
MS.gene39552.t1 AT1G34510 38.562 306 163 8 12 313 21 305 5.49e-56 184
MS.gene39552.t1 AT2G35380 37.621 311 167 9 17 313 34 331 1.72e-55 184
MS.gene39552.t1 AT3G17070 37.354 257 146 8 55 305 18 265 9.44e-47 159
MS.gene39552.t1 AT2G35380 37.945 253 132 8 75 313 2 243 1.82e-41 144
MS.gene39552.t1 AT2G24800 42.941 170 90 1 12 181 30 192 2.86e-41 144
MS.gene39552.t1 AT4G25980 35.945 217 127 4 12 223 70 279 4.14e-38 137
MS.gene39552.t1 AT5G39580 41.176 170 92 4 15 184 27 188 1.52e-35 129
MS.gene39552.t1 AT3G42570 35.000 120 74 3 66 183 32 149 9.07e-14 68.2

Find 84 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGACATGGTTGCTCTTTC+TGG 0.065768 4.2:-23300004 MS.gene39552:CDS
TTCAAACAATCACCTGTTTC+TGG 0.172092 4.2:-23301839 MS.gene39552:CDS
CCCTTCTTCACTTGGTAATA+GGG 0.193331 4.2:+23300139 None:intergenic
AGAATGTACTGCCCAAATTT+TGG 0.207449 4.2:-23299869 MS.gene39552:CDS
CTAAGAGCTTTCAATAGTTT+AGG 0.223221 4.2:+23299890 None:intergenic
TCTGTGTTTCCACCAAAATT+TGG 0.228638 4.2:+23299857 None:intergenic
ATATTTGACCATGCATATTA+TGG 0.241704 4.2:-23299800 MS.gene39552:CDS
TCCCTTCTTCACTTGGTAAT+AGG 0.256193 4.2:+23300138 None:intergenic
TAAGAGCTTTCAATAGTTTA+GGG 0.257185 4.2:+23299891 None:intergenic
CTTTCTGGTGCCCACACAAT+TGG 0.269689 4.2:-23299989 MS.gene39552:CDS
AATAGTTTAGGGTTCATATC+TGG 0.303629 4.2:+23299902 None:intergenic
CCCATCTTCCCTTCTTCACT+TGG 0.323437 4.2:+23300131 None:intergenic
CTGTGTTTCCACCAAAATTT+GGG 0.343143 4.2:+23299858 None:intergenic
TTCTACCTGTGGACAAGATT+TGG 0.346708 4.2:+23301892 None:intergenic
ATCAAAATCTTCAATTCAAA+AGG 0.367858 4.2:-23300037 MS.gene39552:CDS
AAAGGAGTAGTTGCATCAAA+TGG 0.398961 4.2:+23299824 None:intergenic
TCTGCCAACTCCTTGCTCCC+TGG 0.412835 4.2:+23301618 None:intergenic
ATGGTGGCTGGTCCAGAAAC+AGG 0.445073 4.2:+23301827 None:intergenic
GCTAGCATCGGACCAAGCTT+TGG 0.451580 4.2:-23299753 MS.gene39552:CDS
AAGGAGTAGTTGCATCAAAT+GGG 0.454067 4.2:+23299825 None:intergenic
TTCAAAAGGCTTAACTATAC+AGG 0.454734 4.2:-23300023 MS.gene39552:CDS
TTAGGGTTCATATCTGGATC+GGG 0.474005 4.2:+23299908 None:intergenic
GATCGGGTTGCCCCTTGCCT+CGG 0.475883 4.2:+23299924 None:intergenic
GGTAACTTGCAGAACAAGAT+GGG 0.482427 4.2:-23299779 MS.gene39552:CDS
TTACTTCTACAAAGCAATCA+TGG 0.487368 4.2:+23301792 None:intergenic
AGCATCAAAGCCAGGGAGCA+AGG 0.489904 4.2:-23301628 MS.gene39552:CDS
TGAACCAGTGACTTGGTTCG+TGG 0.491604 4.2:+23299722 None:intergenic
ACCAAGTGAAGAAGGGAAGA+TGG 0.492354 4.2:-23300132 MS.gene39552:CDS
ACCCTATTACCAAGTGAAGA+AGG 0.494533 4.2:-23300140 MS.gene39552:CDS
CTCTACAATTACCGAGGCAA+GGG 0.496200 4.2:-23299935 MS.gene39552:CDS
CCACAGGTAGAACAGCTTGT+TGG 0.497989 4.2:-23301881 MS.gene39552:CDS
AGAGGATAATAAAGATTTGA+GGG 0.498161 4.2:-23301586 MS.gene39552:CDS
AATAAAGATTTGAGGGTGGA+AGG 0.500941 4.2:-23301579 MS.gene39552:CDS
TTTAGGGTTCATATCTGGAT+CGG 0.504196 4.2:+23299907 None:intergenic
GAAAGATATCAATGGCATCA+AGG 0.505017 4.2:-23300105 MS.gene39552:CDS
CGTAGTAATTAACGCTAAGC+TGG 0.515549 4.2:+23301915 None:intergenic
CAGAGGATAATAAAGATTTG+AGG 0.521535 4.2:-23301587 MS.gene39552:CDS
TGGTAACTTGCAGAACAAGA+TGG 0.522380 4.2:-23299780 MS.gene39552:CDS
CCAAGTGAAGAAGGGAAGAT+GGG 0.523220 4.2:-23300131 MS.gene39552:CDS
AAAATCTTGAACCAGTGACT+TGG 0.526982 4.2:+23299715 None:intergenic
CATCAACGGTTGAGTTTGCA+CGG 0.527620 4.2:+23300065 None:intergenic
ATCGGACCAAGCTTTGGCAT+TGG 0.528716 4.2:-23299747 MS.gene39552:CDS
CTACAAAGCAATCATGGAAG+AGG 0.534733 4.2:+23301798 None:intergenic
TGCCTCGGTAATTGTAGAGG+CGG 0.545543 4.2:+23299939 None:intergenic
ATCAACGGTTGAGTTTGCAC+GGG 0.545631 4.2:+23300066 None:intergenic
TATCAATGGCATCAAGGGTA+GGG 0.553936 4.2:-23300099 MS.gene39552:CDS
GCCTCGGTAATTGTAGAGGC+GGG 0.554811 4.2:+23299940 None:intergenic
CCTCTACAATTACCGAGGCA+AGG 0.555029 4.2:-23299936 MS.gene39552:CDS
ATATCAATGGCATCAAGGGT+AGG 0.557778 4.2:-23300100 MS.gene39552:CDS
AAAGCCAGGGAGCAAGGAGT+TGG 0.559724 4.2:-23301622 MS.gene39552:CDS
AAGAGGAGACGAATGGTGGC+TGG 0.560284 4.2:+23301815 None:intergenic
CCCTATTACCAAGTGAAGAA+GGG 0.562996 4.2:-23300139 MS.gene39552:CDS
GTGAAGAAGGGAAGATGGGA+TGG 0.566639 4.2:-23300127 MS.gene39552:CDS
AAAGATATCAATGGCATCAA+GGG 0.572225 4.2:-23300104 MS.gene39552:CDS
CAAGATGGGGTTGCTAGCAT+CGG 0.578558 4.2:-23299765 MS.gene39552:CDS
TATGCATGGTCAAATATGAA+AGG 0.579897 4.2:+23299806 None:intergenic
GTGGATCCAATGCCAAAGCT+TGG 0.585349 4.2:+23299741 None:intergenic
GCAAGTTACCATAATATGCA+TGG 0.586628 4.2:+23299792 None:intergenic
GTTGGCAGAGAAAGATGCAG+AGG 0.587154 4.2:-23301604 MS.gene39552:CDS
GGATCCACGAACCAAGTCAC+TGG 0.591425 4.2:-23299726 MS.gene39552:CDS
ATGGGATGGAAAGATATCAA+TGG 0.591625 4.2:-23300113 MS.gene39552:CDS
CTACGCCAAATCTTGTCCAC+AGG 0.592646 4.2:-23301897 MS.gene39552:CDS
TCTGCACAGGACACCACACT+AGG 0.596049 4.2:+23301510 None:intergenic
CCTTGCCTCGGTAATTGTAG+AGG 0.602314 4.2:+23299936 None:intergenic
TAATTAACGCTAAGCTGGCG+AGG 0.605457 4.2:+23301920 None:intergenic
GGATAATAAAGATTTGAGGG+TGG 0.613876 4.2:-23301583 MS.gene39552:CDS
AATTGCAAGAATATCTGCAC+AGG 0.614557 4.2:+23301497 None:intergenic
TATAAGGAAGGCCAAAGAAG+TGG 0.618453 4.2:-23301547 MS.gene39552:CDS
AGTTTAGTGAAAGTTGTGAG+AGG 0.619520 4.2:-23299638 MS.gene39552:CDS
AAGGAAGGCCAAAGAAGTGG+TGG 0.621870 4.2:-23301544 MS.gene39552:CDS
AGGCTTAACTATACAGGACA+TGG 0.625897 4.2:-23300017 MS.gene39552:CDS
AATGAGCAAATCCAATTGTG+TGG 0.649262 4.2:+23299978 None:intergenic
TGATTGTTTGAATTGTTGAG+AGG 0.662875 4.2:+23301850 None:intergenic
TCAACGGTTGAGTTTGCACG+GGG 0.662885 4.2:+23300067 None:intergenic
ATGGAAGAGGAGACGAATGG+TGG 0.663722 4.2:+23301811 None:intergenic
AGGAGTAGTTGCATCAAATG+GGG 0.666012 4.2:+23299826 None:intergenic
TCTACAATTACCGAGGCAAG+GGG 0.667695 4.2:-23299934 MS.gene39552:CDS
CCAACAAGCTGTTCTACCTG+TGG 0.672022 4.2:+23301881 None:intergenic
ATGAGCAAATCCAATTGTGT+GGG 0.674056 4.2:+23299979 None:intergenic
ACCCGCCTCTACAATTACCG+AGG 0.674878 4.2:-23299941 MS.gene39552:CDS
TCATGTGTGACACAGGCAGG+GGG 0.702520 4.2:-23300163 MS.gene39552:intron
ATCATGGAAGAGGAGACGAA+TGG 0.708190 4.2:+23301808 None:intergenic
GTAACTTGCAGAACAAGATG+GGG 0.712438 4.2:-23299778 MS.gene39552:CDS
CAACGGTTGAGTTTGCACGG+GGG 0.732395 4.2:+23300068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATATTAATTGTAGTTT+TGG - chr4.2:23300937-23300956 MS.gene39552:intron 10.0%
!!! TTTTGTTTTTAGTTTTTATT+TGG + chr4.2:23301260-23301279 None:intergenic 10.0%
!! GATATATTAAATCAAATTAG+TGG + chr4.2:23300135-23300154 None:intergenic 15.0%
!! TACAATTAATATTATAGTGT+GGG + chr4.2:23300933-23300952 None:intergenic 15.0%
!!! TCATTTCTTTTTATTTGAAT+TGG + chr4.2:23300577-23300596 None:intergenic 15.0%
!! AAAAATTAGGATTGGAAATT+TGG + chr4.2:23300177-23300196 None:intergenic 20.0%
!! AGAAATAACTTTCAAAACTA+GGG + chr4.2:23300319-23300338 None:intergenic 20.0%
!! AGAACAATAATACTGAAAAT+TGG + chr4.2:23301144-23301163 None:intergenic 20.0%
!! ATCAAAATCTTCAATTCAAA+AGG - chr4.2:23301502-23301521 MS.gene39552:CDS 20.0%
!! CAACATAAAGTACAAAAATT+CGG + chr4.2:23301066-23301085 None:intergenic 20.0%
!! CTACAATTAATATTATAGTG+TGG + chr4.2:23300934-23300953 None:intergenic 20.0%
!! TATTATGTTCTGTTAAGAAA+TGG - chr4.2:23301324-23301343 MS.gene39552:intron 20.0%
!! TGATATGATATGATATGATA+TGG + chr4.2:23301175-23301194 None:intergenic 20.0%
!! TTTGGTATATGATTATGAAT+AGG - chr4.2:23300623-23300642 MS.gene39552:intron 20.0%
!!! AAATTTCCAATCCTAATTTT+TGG - chr4.2:23300176-23300195 MS.gene39552:intron 20.0%
!!! ATTTTTGATGTAACCATATT+TGG - chr4.2:23300340-23300359 MS.gene39552:intron 20.0%
!!! GATTTTTGTATCTTTAATGT+AGG + chr4.2:23300911-23300930 None:intergenic 20.0%
! AGAGGATAATAAAGATTTGA+GGG - chr4.2:23299953-23299972 MS.gene39552:CDS 25.0%
! ATAATACTGAAAATTGGACT+TGG + chr4.2:23301138-23301157 None:intergenic 25.0%
! ATATTTGACCATGCATATTA+TGG - chr4.2:23301739-23301758 MS.gene39552:intron 25.0%
! ATGAAACCAAAAATTAGGAT+TGG + chr4.2:23300185-23300204 None:intergenic 25.0%
! CAGAAATAACTTTCAAAACT+AGG + chr4.2:23300320-23300339 None:intergenic 25.0%
! GAAACAAACAAATCCTATAT+TGG - chr4.2:23300866-23300885 MS.gene39552:intron 25.0%
! GAAATGATTCTCAAACATTT+AGG - chr4.2:23300590-23300609 MS.gene39552:intron 25.0%
! TAAGAGCTTTCAATAGTTTA+GGG + chr4.2:23301651-23301670 None:intergenic 25.0%
! TAGCTAGACAAATTAACAAA+TGG + chr4.2:23300759-23300778 None:intergenic 25.0%
! TATTACTTTCTGTCAAGAAA+TGG - chr4.2:23301283-23301302 MS.gene39552:intron 25.0%
! TCATATCATATCATATCAGA+TGG - chr4.2:23301177-23301196 MS.gene39552:intron 25.0%
!! GAGATAACTTAATGTGATTT+TGG + chr4.2:23300837-23300856 None:intergenic 25.0%
!!! AGTCCTAACATTCTAAAATA+AGG - chr4.2:23300215-23300234 MS.gene39552:intron 25.0%
!!! GTCCTAACATTCTAAAATAA+GGG - chr4.2:23300216-23300235 MS.gene39552:intron 25.0%
!!! TCTTTATATATTTTGACTGC+AGG - chr4.2:23300421-23300440 MS.gene39552:intron 25.0%
AAAACTTAATGCACTACTGT+AGG + chr4.2:23300252-23300271 None:intergenic 30.0%
AAACTTAATGCACTACTGTA+GGG + chr4.2:23300251-23300270 None:intergenic 30.0%
AAAGATATCAATGGCATCAA+GGG - chr4.2:23301435-23301454 MS.gene39552:intron 30.0%
AACAAATCCTATATTGGTAC+TGG - chr4.2:23300872-23300891 MS.gene39552:intron 30.0%
AAGAAATGGCTAACTATACT+TGG - chr4.2:23301338-23301357 MS.gene39552:intron 30.0%
AATCATATACCAAAAGACCA+AGG + chr4.2:23300617-23300636 None:intergenic 30.0%
ACTTAAATGGACAACAGAAA+AGG - chr4.2:23300366-23300385 MS.gene39552:intron 30.0%
ATCATATACCAAAAGACCAA+GGG + chr4.2:23300616-23300635 None:intergenic 30.0%
CAGAGGATAATAAAGATTTG+AGG - chr4.2:23299952-23299971 MS.gene39552:CDS 30.0%
CTAAGAGCTTTCAATAGTTT+AGG + chr4.2:23301652-23301671 None:intergenic 30.0%
CTTAAATGGACAACAGAAAA+GGG - chr4.2:23300367-23300386 MS.gene39552:intron 30.0%
GGAGAATGAAACCAAAAATT+AGG + chr4.2:23300190-23300209 None:intergenic 30.0%
GTTGGGGGAAAAAAATTATT+TGG + chr4.2:23300689-23300708 None:intergenic 30.0%
TATGCATGGTCAAATATGAA+AGG + chr4.2:23301736-23301755 None:intergenic 30.0%
TCATGTTGTCATATACTGTT+TGG - chr4.2:23301020-23301039 MS.gene39552:intron 30.0%
TCTCTGTTATTCTGTAAAGT+TGG + chr4.2:23300539-23300558 None:intergenic 30.0%
TGATTGTTTGAATTGTTGAG+AGG + chr4.2:23299692-23299711 None:intergenic 30.0%
TTACTTCTACAAAGCAATCA+TGG + chr4.2:23299750-23299769 None:intergenic 30.0%
TTCAAAAGGCTTAACTATAC+AGG - chr4.2:23301516-23301535 MS.gene39552:CDS 30.0%
TTTCTGTTGTCCATTTAAGT+GGG + chr4.2:23300366-23300385 None:intergenic 30.0%
! AATAGTTTAGGGTTCATATC+TGG + chr4.2:23301640-23301659 None:intergenic 30.0%
! GGATTGGAAATTTGGAATAA+AGG + chr4.2:23300169-23300188 None:intergenic 30.0%
! TTTTAATAGCATCAAAGCCA+GGG - chr4.2:23299904-23299923 MS.gene39552:CDS 30.0%
! TTTTCTGTTGTCCATTTAAG+TGG + chr4.2:23300367-23300386 None:intergenic 30.0%
!! ATTTTAATAGCATCAAAGCC+AGG - chr4.2:23299903-23299922 MS.gene39552:CDS 30.0%
!! GTTTTGACATCATTGATATC+AGG - chr4.2:23300267-23300286 MS.gene39552:intron 30.0%
!! TAATGTTAGCTCTTTTGTCA+TGG + chr4.2:23300713-23300732 None:intergenic 30.0%
!!! AGGTTTTGAAACTATAAGGA+AGG - chr4.2:23299980-23299999 MS.gene39552:CDS 30.0%
!!! ATTTTAGAATGTTAGGACTC+AGG + chr4.2:23300214-23300233 None:intergenic 30.0%
!!! TGCCCTTATTTTAGAATGTT+AGG + chr4.2:23300221-23300240 None:intergenic 30.0%
!!! TGGAAGGTTTTGAAACTATA+AGG - chr4.2:23299976-23299995 MS.gene39552:CDS 30.0%
AAAATCTTGAACCAGTGACT+TGG + chr4.2:23301827-23301846 None:intergenic 35.0%
AAAGGAGTAGTTGCATCAAA+TGG + chr4.2:23301718-23301737 None:intergenic 35.0%
AAATCCTGAAAATGAGGTTG+AGG + chr4.2:23299845-23299864 None:intergenic 35.0%
AACCAGAAATCCTGAAAATG+AGG + chr4.2:23299851-23299870 None:intergenic 35.0%
AAGGAGTAGTTGCATCAAAT+GGG + chr4.2:23301717-23301736 None:intergenic 35.0%
AATAAAGATTTGAGGGTGGA+AGG - chr4.2:23299960-23299979 MS.gene39552:CDS 35.0%
AATACGCTAGACATTGTTAC+AGG - chr4.2:23300790-23300809 MS.gene39552:intron 35.0%
AATGAGCAAATCCAATTGTG+TGG + chr4.2:23301564-23301583 None:intergenic 35.0%
AATTGCAAGAATATCTGCAC+AGG + chr4.2:23300045-23300064 None:intergenic 35.0%
AGAGTGACTGTTTCATACAA+GGG - chr4.2:23300968-23300987 MS.gene39552:intron 35.0%
AGTTTAGTGAAAGTTGTGAG+AGG - chr4.2:23301901-23301920 MS.gene39552:CDS 35.0%
ATGAGCAAATCCAATTGTGT+GGG + chr4.2:23301563-23301582 None:intergenic 35.0%
ATGGGATGGAAAGATATCAA+TGG - chr4.2:23301426-23301445 MS.gene39552:intron 35.0%
CTCTTAACCAGTACCAATAT+AGG + chr4.2:23300882-23300901 None:intergenic 35.0%
CTGTGTTTCCACCAAAATTT+GGG + chr4.2:23301684-23301703 None:intergenic 35.0%
GAAAGATATCAATGGCATCA+AGG - chr4.2:23301434-23301453 MS.gene39552:intron 35.0%
GACTTGTAAGATTAAGAAGC+AGG + chr4.2:23301116-23301135 None:intergenic 35.0%
GCAAGTTACCATAATATGCA+TGG + chr4.2:23301750-23301769 None:intergenic 35.0%
GGATAATAAAGATTTGAGGG+TGG - chr4.2:23299956-23299975 MS.gene39552:CDS 35.0%
TCTGTGTTTCCACCAAAATT+TGG + chr4.2:23301685-23301704 None:intergenic 35.0%
TTCAAACAATCACCTGTTTC+TGG - chr4.2:23299700-23299719 MS.gene39552:CDS 35.0%
! AGAATGTACTGCCCAAATTT+TGG - chr4.2:23301670-23301689 MS.gene39552:intron 35.0%
! TAAGAAGCAGGTGTTGTAAT+TGG + chr4.2:23301104-23301123 None:intergenic 35.0%
! TTTAGGGTTCATATCTGGAT+CGG + chr4.2:23301635-23301654 None:intergenic 35.0%
! TTTTCCTCAACCTCATTTTC+AGG - chr4.2:23299838-23299857 MS.gene39552:CDS 35.0%
!! AACCTCATTTTCAGGATTTC+TGG - chr4.2:23299846-23299865 MS.gene39552:CDS 35.0%
!! ACTGGTTCAAGATTTTGCAA+AGG - chr4.2:23301831-23301850 MS.gene39552:CDS 35.0%
!! GATTTTGATGAGCTCATCAA+CGG + chr4.2:23301491-23301510 None:intergenic 35.0%
ACCCTATTACCAAGTGAAGA+AGG - chr4.2:23301399-23301418 MS.gene39552:intron 40.0%
AGGAGTAGTTGCATCAAATG+GGG + chr4.2:23301716-23301735 None:intergenic 40.0%
AGGCTTAACTATACAGGACA+TGG - chr4.2:23301522-23301541 MS.gene39552:CDS 40.0%
ATATCAATGGCATCAAGGGT+AGG - chr4.2:23301439-23301458 MS.gene39552:intron 40.0%
CAGAGTGACTGTTTCATACA+AGG - chr4.2:23300967-23300986 MS.gene39552:intron 40.0%
CCATATTTGGCCCACTTAAA+TGG - chr4.2:23300353-23300372 MS.gene39552:intron 40.0%
CCATTTAAGTGGGCCAAATA+TGG + chr4.2:23300356-23300375 None:intergenic 40.0%
CCCTATTACCAAGTGAAGAA+GGG - chr4.2:23301400-23301419 MS.gene39552:intron 40.0%
CGTAGTAATTAACGCTAAGC+TGG + chr4.2:23299627-23299646 None:intergenic 40.0%
CTACAAAGCAATCATGGAAG+AGG + chr4.2:23299744-23299763 None:intergenic 40.0%
GGTTTGAATGAGTGAATGCA+GGG - chr4.2:23299867-23299886 MS.gene39552:CDS 40.0%
GTTGTGAGAGGAAAAAAGCA+CGG - chr4.2:23301913-23301932 MS.gene39552:CDS 40.0%
TAGTATGTCATGTGTGACAC+AGG - chr4.2:23301369-23301388 MS.gene39552:intron 40.0%
TATAAGGAAGGCCAAAGAAG+TGG - chr4.2:23299992-23300011 MS.gene39552:CDS 40.0%
TATCAATGGCATCAAGGGTA+GGG - chr4.2:23301440-23301459 MS.gene39552:intron 40.0%
TGGTTTGAATGAGTGAATGC+AGG - chr4.2:23299866-23299885 MS.gene39552:CDS 40.0%
TTAGAATGTTAGGACTCAGG+AGG + chr4.2:23300211-23300230 None:intergenic 40.0%
TTAGGGTTCATATCTGGATC+GGG + chr4.2:23301634-23301653 None:intergenic 40.0%
TTCTACCTGTGGACAAGATT+TGG + chr4.2:23299650-23299669 None:intergenic 40.0%
TTCTCAAACATTTAGGCCCT+TGG - chr4.2:23300597-23300616 MS.gene39552:intron 40.0%
! AGCAAGAGATTTTGTGCACT+TGG - chr4.2:23300067-23300086 MS.gene39552:CDS 40.0%
! AGCTCTTTTGTCATGGTGTT+GGG + chr4.2:23300706-23300725 None:intergenic 40.0%
! ATGTACTGCCCAAATTTTGG+TGG - chr4.2:23301673-23301692 MS.gene39552:intron 40.0%
! CCCTTCTTCACTTGGTAATA+GGG + chr4.2:23301403-23301422 None:intergenic 40.0%
! CTTTTTCTCCACCACTTCTT+TGG + chr4.2:23300006-23300025 None:intergenic 40.0%
! GGTAACTTGCAGAACAAGAT+GGG - chr4.2:23301760-23301779 MS.gene39552:intron 40.0%
! GTAACTTGCAGAACAAGATG+GGG - chr4.2:23301761-23301780 MS.gene39552:intron 40.0%
! TAGCTCTTTTGTCATGGTGT+TGG + chr4.2:23300707-23300726 None:intergenic 40.0%
! TCCCTTCTTCACTTGGTAAT+AGG + chr4.2:23301404-23301423 None:intergenic 40.0%
! TGGTAACTTGCAGAACAAGA+TGG - chr4.2:23301759-23301778 MS.gene39552:intron 40.0%
! TTGTGAGAGGAAAAAAGCAC+GGG - chr4.2:23301914-23301933 MS.gene39552:CDS 40.0%
!! TTAGCTTTGCATGCAACTGT+TGG - chr4.2:23299811-23299830 MS.gene39552:CDS 40.0%
ACCAAGTGAAGAAGGGAAGA+TGG - chr4.2:23301407-23301426 MS.gene39552:intron 45.0%
ATCAACGGTTGAGTTTGCAC+GGG + chr4.2:23301476-23301495 None:intergenic 45.0%
ATCATGGAAGAGGAGACGAA+TGG + chr4.2:23299734-23299753 None:intergenic 45.0%
CATCAACGGTTGAGTTTGCA+CGG + chr4.2:23301477-23301496 None:intergenic 45.0%
CCAAGTGAAGAAGGGAAGAT+GGG - chr4.2:23301408-23301427 MS.gene39552:intron 45.0%
CTCTACAATTACCGAGGCAA+GGG - chr4.2:23301604-23301623 MS.gene39552:CDS 45.0%
TAATTAACGCTAAGCTGGCG+AGG + chr4.2:23299622-23299641 None:intergenic 45.0%
TCTACAATTACCGAGGCAAG+GGG - chr4.2:23301605-23301624 MS.gene39552:CDS 45.0%
! TGTGAGAGGAAAAAAGCACG+GGG - chr4.2:23301915-23301934 MS.gene39552:CDS 45.0%
!! CATTTAGGCCCTTGGTCTTT+TGG - chr4.2:23300605-23300624 MS.gene39552:intron 45.0%
!! CTCTTTTGTCATGGTGTTGG+GGG + chr4.2:23300704-23300723 None:intergenic 45.0%
!! GCTCTTTTGTCATGGTGTTG+GGG + chr4.2:23300705-23300724 None:intergenic 45.0%
!! GGAGAAAAAGTGTCCTAGTG+TGG - chr4.2:23300016-23300035 MS.gene39552:CDS 45.0%
AAGGAAGGCCAAAGAAGTGG+TGG - chr4.2:23299995-23300014 MS.gene39552:CDS 50.0%
ATGGAAGAGGAGACGAATGG+TGG + chr4.2:23299731-23299750 None:intergenic 50.0%
ATGTCATGTGTGACACAGGC+AGG - chr4.2:23301373-23301392 MS.gene39552:intron 50.0%
CAAGATGGGGTTGCTAGCAT+CGG - chr4.2:23301774-23301793 MS.gene39552:intron 50.0%
CAGGACATGGTTGCTCTTTC+TGG - chr4.2:23301535-23301554 MS.gene39552:CDS 50.0%
CCAACAAGCTGTTCTACCTG+TGG + chr4.2:23299661-23299680 None:intergenic 50.0%
CCACAGGTAGAACAGCTTGT+TGG - chr4.2:23299658-23299677 MS.gene39552:CDS 50.0%
CCCATCTTCCCTTCTTCACT+TGG + chr4.2:23301411-23301430 None:intergenic 50.0%
CCTCTACAATTACCGAGGCA+AGG - chr4.2:23301603-23301622 MS.gene39552:CDS 50.0%
CCTTGCCTCGGTAATTGTAG+AGG + chr4.2:23301606-23301625 None:intergenic 50.0%
CGCTAGACATTGTTACAGGC+TGG - chr4.2:23300794-23300813 MS.gene39552:intron 50.0%
CTACGCCAAATCTTGTCCAC+AGG - chr4.2:23299642-23299661 MS.gene39552:CDS 50.0%
GTGAAGAAGGGAAGATGGGA+TGG - chr4.2:23301412-23301431 MS.gene39552:intron 50.0%
GTGGATCCAATGCCAAAGCT+TGG + chr4.2:23301801-23301820 None:intergenic 50.0%
GTTGGCAGAGAAAGATGCAG+AGG - chr4.2:23299935-23299954 MS.gene39552:CDS 50.0%
TCAACGGTTGAGTTTGCACG+GGG + chr4.2:23301475-23301494 None:intergenic 50.0%
TGCCTCGGTAATTGTAGAGG+CGG + chr4.2:23301603-23301622 None:intergenic 50.0%
TGTCATGTGTGACACAGGCA+GGG - chr4.2:23301374-23301393 MS.gene39552:intron 50.0%
! ATCGGACCAAGCTTTGGCAT+TGG - chr4.2:23301792-23301811 MS.gene39552:intron 50.0%
! CTTTCTGGTGCCCACACAAT+TGG - chr4.2:23301550-23301569 MS.gene39552:CDS 50.0%
! GAAAAAAGCACGGGGAGAGA+AGG - chr4.2:23301923-23301942 MS.gene39552:CDS 50.0%
!! TGAACCAGTGACTTGGTTCG+TGG + chr4.2:23301820-23301839 None:intergenic 50.0%
AAAGCCAGGGAGCAAGGAGT+TGG - chr4.2:23299917-23299936 MS.gene39552:CDS 55.0%
AAGAGGAGACGAATGGTGGC+TGG + chr4.2:23299727-23299746 None:intergenic 55.0%
ACCCGCCTCTACAATTACCG+AGG - chr4.2:23301598-23301617 MS.gene39552:CDS 55.0%
AGCATCAAAGCCAGGGAGCA+AGG - chr4.2:23299911-23299930 MS.gene39552:CDS 55.0%
CAACGGTTGAGTTTGCACGG+GGG + chr4.2:23301474-23301493 None:intergenic 55.0%
GCCTCGGTAATTGTAGAGGC+GGG + chr4.2:23301602-23301621 None:intergenic 55.0%
GGATCCACGAACCAAGTCAC+TGG - chr4.2:23301813-23301832 MS.gene39552:CDS 55.0%
GTCATGTGTGACACAGGCAG+GGG - chr4.2:23301375-23301394 MS.gene39552:intron 55.0%
TCATGTGTGACACAGGCAGG+GGG - chr4.2:23301376-23301395 MS.gene39552:intron 55.0%
TCTGCACAGGACACCACACT+AGG + chr4.2:23300032-23300051 None:intergenic 55.0%
TGAGTTTGCACGGGGGATGT+TGG + chr4.2:23301467-23301486 None:intergenic 55.0%
! ATGGTGGCTGGTCCAGAAAC+AGG + chr4.2:23299715-23299734 None:intergenic 55.0%
! GCTAGCATCGGACCAAGCTT+TGG - chr4.2:23301786-23301805 MS.gene39552:intron 55.0%
TATGTGTGTGCGCGCGTGTG+TGG + chr4.2:23299780-23299799 None:intergenic 60.0%
TCTGCCAACTCCTTGCTCCC+TGG + chr4.2:23299924-23299943 None:intergenic 60.0%
TGTGCGCGCGTGTGTGGAAT+TGG + chr4.2:23299774-23299793 None:intergenic 60.0%
! GATCGGGTTGCCCCTTGCCT+CGG + chr4.2:23301618-23301637 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23299592 23301969 23299592 ID=MS.gene39552
chr4.2 mRNA 23299592 23301969 23299592 ID=MS.gene39552.t1;Parent=MS.gene39552
chr4.2 exon 23301796 23301969 23301796 ID=MS.gene39552.t1.exon1;Parent=MS.gene39552.t1
chr4.2 CDS 23301796 23301969 23301796 ID=cds.MS.gene39552.t1;Parent=MS.gene39552.t1
chr4.2 exon 23301473 23301673 23301473 ID=MS.gene39552.t1.exon2;Parent=MS.gene39552.t1
chr4.2 CDS 23301473 23301673 23301473 ID=cds.MS.gene39552.t1;Parent=MS.gene39552.t1
chr4.2 exon 23299592 23300170 23299592 ID=MS.gene39552.t1.exon3;Parent=MS.gene39552.t1
chr4.2 CDS 23299592 23300170 23299592 ID=cds.MS.gene39552.t1;Parent=MS.gene39552.t1
Gene Sequence

>MS.gene39552

ATGCTTAATAGCAAAACTACACGCATTCCTCGCCAGCTTAGCGTTAATTACTACGCCAAATCTTGTCCACAGGTAGAACAGCTTGTTGGTTCAGTCACCTCTCAACAATTCAAACAATCACCTGTTTCTGGACCAGCCACCATTCGTCTCCTCTTCCATGATTGCTTTGTAGAAGTAAGCCAATTCCACACACGCGCGCACACACATATATAAATGTTTTTAGCTTTGCATGCAACTGTTGGTTTGTTTTCCTCAACCTCATTTTCAGGATTTCTGGTTTGAATGAGTGAATGCAGGGTTGTGATGCATCAATTTTAATAGCATCAAAGCCAGGGAGCAAGGAGTTGGCAGAGAAAGATGCAGAGGATAATAAAGATTTGAGGGTGGAAGGTTTTGAAACTATAAGGAAGGCCAAAGAAGTGGTGGAGAAAAAGTGTCCTAGTGTGGTGTCCTGTGCAGATATTCTTGCAATTGCAGCAAGAGATTTTGTGCACTTGGTAAGTTACTTGTTCATTGTTTCAATTTCATATATCATGATTACCACTAATTTGATTTAATATATCTTCATCTGTTTCCTTTATTCCAAATTTCCAATCCTAATTTTTGGTTTCATTCTCCTCCTGAGTCCTAACATTCTAAAATAAGGGCAGTTAATGCCCTACAGTAGTGCATTAAGTTTTGACATCATTGATATCAGGTCACATGCAATACAAGTACAAAGTATCCCTAGTTTTGAAAGTTATTTCTGATTTTTGATGTAACCATATTTGGCCCACTTAAATGGACAACAGAAAAGGGCAGAAACTAATTAAAATTTAAAAGTTGTGAATCTTTATATATTTTGACTGCAGGCTCAATTTTTTCTTACATGTTCTTTTGCTGCATCTTTTTTGTTTCTTAGATAGCAGCTAGAAGAATACATTTCTAGATAAAATATGTGTTTTCCAACTTTACAGAATAACAGAGACGCTTTGTGAAAATACCAATTCAAATAAAAAGAAATGATTCTCAAACATTTAGGCCCTTGGTCTTTTGGTATATGATTATGAATAGGAAAATAGATTTCTTTATTATAATGTAAAAAGACAACATAGCCAAATAATTTTTTTCCCCCAACACCATGACAAAAGAGCTAACATTATATTGTAGAATAAATTAATCTTTCCATTTGTTAATTTGTCTAGCTAAAATGACACAGAATACGCTAGACATTGTTACAGGCTGGTGTTGATTCTATATTAACCAAAATCACATTAAGTTATCTCTAGAGATTAGAAACAAACAAATCCTATATTGGTACTGGTTAAGAGTTTTTTCCTACATTAAAGATACAAAAATCCCACACTATAATATTAATTGTAGTTTTGGCAGTTAGCAGAGTGACTGTTTCATACAAGGGCTCTGCATAAAGTCAAATTGAATCTGTTTTCATGTTGTCATATACTGTTTGGTATATTAGACTATAAAACAGCCGAATTTTTGTACTTTATGTTGAATTTTATTTAGACACCAATTACAACACCTGCTTCTTAATCTTACAAGTCCAAGTCCAATTTTCAGTATTATTGTTCTTTTCTATGCCATATCATATCATATCATATCAGATGGATAGATACATGTAGCAACTTAACACTATGAAAGAATAAAAAAGTTCAATTAAAGAAACCAAATAAAAACTAAAAACAAAACACTATTACTTTCTGTCAAGAAATGGATAATTATGTTGAGTTTATATTATGTTCTGTTAAGAAATGGCTAACTATACTTGGTTTAATTTTAGTATGTCATGTGTGACACAGGCAGGGGGACCCTATTACCAAGTGAAGAAGGGAAGATGGGATGGAAAGATATCAATGGCATCAAGGGTAGGGTCCAACATCCCCCGTGCAAACTCAACCGTTGATGAGCTCATCAAAATCTTCAATTCAAAAGGCTTAACTATACAGGACATGGTTGCTCTTTCTGGTGCCCACACAATTGGATTTGCTCATTGCAAGAGCTTTTTGACCCGCCTCTACAATTACCGAGGCAAGGGGCAACCCGATCCAGATATGAACCCTAAACTATTGAAAGCTCTTAGAATGTACTGCCCAAATTTTGGTGGAAACACAGACATTGTTGCCCCATTTGATGCAACTACTCCTTTCATATTTGACCATGCATATTATGGTAACTTGCAGAACAAGATGGGGTTGCTAGCATCGGACCAAGCTTTGGCATTGGATCCACGAACCAAGTCACTGGTTCAAGATTTTGCAAAGGATAAACAAAAGTTTTTTCAAGCTTTTGCATCTGCTATAGACAAAATGAGTTTAGTGAAAGTTGTGAGAGGAAAAAAGCACGGGGAGAGAAGGAGAGATTGTAGCATGCATATGTGA
Protein sequence

>MS.gene39552.t1

MLNSKTTRIPRQLSVNYYAKSCPQVEQLVGSVTSQQFKQSPVSGPATIRLLFHDCFVEGCDASILIASKPGSKELAEKDAEDNKDLRVEGFETIRKAKEVVEKKCPSVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMASRVGSNIPRANSTVDELIKIFNSKGLTIQDMVALSGAHTIGFAHCKSFLTRLYNYRGKGQPDPDMNPKLLKALRMYCPNFGGNTDIVAPFDATTPFIFDHAYYGNLQNKMGLLASDQALALDPRTKSLVQDFAKDKQKFFQAFASAIDKMSLVKVVRGKKHGERRRDCSMHM