Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42162.t1 | AES79985.1 | 77.2 | 250 | 15 | 1 | 30 | 279 | 104 | 311 | 9.10E-56 | 227.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42162.t1 | G7L0E1 | 77.2 | 250 | 15 | 1 | 30 | 279 | 104 | 311 | 6.5e-56 | 227.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene42162 | 0.816817 | 4.55E-52 | -1.69E-46 |
| MS.gene049271 | MS.gene42162 | 0.804633 | 1.97E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene42162 | 0.830264 | 3.24E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene42162 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene42162 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene42162 | 0.80643 | 8.26E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene42162 | 0.847408 | 1.18E-59 | -1.69E-46 |
| MS.gene049825 | MS.gene42162 | 0.860866 | 1.53E-63 | -1.69E-46 |
| MS.gene049850 | MS.gene42162 | 0.846321 | 2.34E-59 | -1.69E-46 |
| MS.gene049873 | MS.gene42162 | 0.852184 | 5.45E-61 | -1.69E-46 |
| MS.gene049979 | MS.gene42162 | 0.805684 | 1.19E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene42162 | 0.813313 | 2.73E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene42162 | 0.802357 | 5.83E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene42162 | 0.816918 | 4.32E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene42162 | 0.803108 | 4.08E-49 | -1.69E-46 |
| MS.gene050799 | MS.gene42162 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene42162 | 0.832759 | 7.87E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene42162 | 0.813032 | 3.14E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene42162 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene42162 | 0.817218 | 3.69E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene42162 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene42162 | 0.801398 | 9.18E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene42162 | 0.812412 | 4.29E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene42162 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene42162 | 0.860591 | 1.86E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene42162 | 0.85318 | 2.83E-61 | -1.69E-46 |
| MS.gene051744 | MS.gene42162 | 0.815945 | 7.13E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene42162 | 0.827492 | 1.52E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene42162 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene42162 | 0.815892 | 7.32E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene42162 | -0.801394 | 9.19E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene42162 | 0.832251 | 1.05E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene42162 | 0.853683 | 2.03E-61 | -1.69E-46 |
| MS.gene052582 | MS.gene42162 | 0.821243 | 4.48E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene42162 | 0.818536 | 1.86E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene42162 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene42162 | 0.827047 | 1.94E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene42162 | 0.817159 | 3.81E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene42162 | 0.827288 | 1.70E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene42162 | 0.830149 | 3.45E-55 | -1.69E-46 |
| MS.gene052879 | MS.gene42162 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene052896 | MS.gene42162 | 0.841813 | 3.78E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene42162 | 0.801194 | 1.01E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene42162 | 0.805536 | 1.27E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene42162 | 0.836147 | 1.11E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene42162 | 0.846097 | 2.69E-59 | -1.69E-46 |
| MS.gene053597 | MS.gene42162 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene42162 | 0.8474 | 1.18E-59 | -1.69E-46 |
| MS.gene05364 | MS.gene42162 | 0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene42162 | 0.829024 | 6.49E-55 | -1.69E-46 |
| MS.gene053995 | MS.gene42162 | 0.803945 | 2.74E-49 | -1.69E-46 |
| MS.gene054250 | MS.gene42162 | 0.811735 | 6.03E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene42162 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene42162 | 0.805662 | 1.20E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene42162 | 0.836365 | 9.77E-57 | -1.69E-46 |
| MS.gene055465 | MS.gene42162 | 0.848478 | 5.98E-60 | -1.69E-46 |
| MS.gene055466 | MS.gene42162 | 0.869271 | 3.51E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene42162 | 0.862121 | 6.34E-64 | -1.69E-46 |
| MS.gene055512 | MS.gene42162 | 0.843264 | 1.56E-58 | -1.69E-46 |
| MS.gene055580 | MS.gene42162 | -0.826955 | 2.04E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene42162 | 0.832476 | 9.25E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene42162 | 0.823846 | 1.11E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene42162 | 0.805928 | 1.05E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene42162 | -0.817814 | 2.71E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene42162 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene42162 | 0.814588 | 1.43E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene42162 | 0.813116 | 3.01E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene42162 | 0.801451 | 8.95E-49 | -1.69E-46 |
| MS.gene056642 | MS.gene42162 | 0.806926 | 6.49E-50 | -1.69E-46 |
| MS.gene056643 | MS.gene42162 | 0.813068 | 3.09E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene42162 | 0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene057287 | MS.gene42162 | 0.807584 | 4.71E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene42162 | 0.821331 | 4.27E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene42162 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene42162 | 0.819183 | 1.33E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene42162 | 0.815366 | 9.59E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene42162 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene42162 | 0.865671 | 4.99E-65 | -1.69E-46 |
| MS.gene058636 | MS.gene42162 | 0.821013 | 5.06E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene42162 | 0.82964 | 4.60E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene42162 | 0.811828 | 5.76E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene42162 | 0.82571 | 4.04E-54 | -1.69E-46 |
| MS.gene059317 | MS.gene42162 | 0.802994 | 4.31E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene42162 | 0.852531 | 4.34E-61 | -1.69E-46 |
| MS.gene059625 | MS.gene42162 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene42162 | 0.805996 | 1.02E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene42162 | 0.801321 | 9.51E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene42162 | 0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene42162 | 0.813898 | 2.03E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene42162 | 0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene42162 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene42162 | 0.858642 | 7.16E-63 | -1.69E-46 |
| MS.gene060619 | MS.gene42162 | 0.812222 | 4.73E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene42162 | 0.809173 | 2.16E-50 | -1.69E-46 |
| MS.gene060690 | MS.gene42162 | 0.80554 | 1.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42162.t1 | MTR_7g075370 | 76.000 | 250 | 39 | 1 | 30 | 279 | 128 | 356 | 1.62e-124 | 359 |
| MS.gene42162.t1 | MTR_7g075470 | 73.600 | 250 | 24 | 1 | 30 | 279 | 104 | 311 | 2.35e-118 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATCAAACGATGGAAAT+AGG | 0.270784 | 7.3:-30387588 | None:intergenic |
| GTGCAGGAGGTGAAGGAGTC+TGG | 0.303169 | 7.3:+30386902 | MS.gene42162:intron |
| GCAATCTGCTGCGAAGGATA+TGG | 0.335315 | 7.3:+30387363 | MS.gene42162:CDS |
| GAAATCTGCTGCGAAGGATA+TGG | 0.341602 | 7.3:+30387237 | MS.gene42162:CDS |
| GCAGTCTGCTGCGAAGGATA+TGG | 0.355180 | 7.3:+30387300 | MS.gene42162:CDS |
| GCAATCCGCAGCGAAGGATA+TGG | 0.359699 | 7.3:+30387489 | MS.gene42162:CDS |
| AGCCTTCGCTCTGCTTTACT+TGG | 0.361216 | 7.3:+30386959 | MS.gene42162:CDS |
| ATTTCCATCGTTTGATTTGT+CGG | 0.381246 | 7.3:+30387591 | MS.gene42162:CDS |
| TTTACTTGGGAAGGTGATTA+CGG | 0.400782 | 7.3:+30386973 | MS.gene42162:CDS |
| TAGGATGTGAACTTGTTCTA+TGG | 0.402680 | 7.3:-30387569 | None:intergenic |
| GCAATCCGCAACAAAAGATA+TGG | 0.403051 | 7.3:+30387426 | MS.gene42162:CDS |
| CATATCTCCAAGAGTATCAT+TGG | 0.418313 | 7.3:-30387074 | None:intergenic |
| AAAATAGCCAATGATACTCT+TGG | 0.432979 | 7.3:+30387067 | MS.gene42162:CDS |
| GTCCCAGTACAGCTCTGAAT+TGG | 0.440833 | 7.3:-30386997 | None:intergenic |
| ATTGAAGGTAAATAAGAGAT+TGG | 0.447043 | 7.3:+30387108 | MS.gene42162:CDS |
| TATGGAAATTGAGGATTTGA+AGG | 0.449937 | 7.3:+30387507 | MS.gene42162:CDS |
| TATGAAGAAACAAATATTGA+AGG | 0.453822 | 7.3:+30387093 | MS.gene42162:CDS |
| GGACCAATTCAGAGCTGTAC+TGG | 0.459816 | 7.3:+30386994 | MS.gene42162:CDS |
| AACAAAAGATATGGAAATTG+AGG | 0.463508 | 7.3:+30387435 | MS.gene42162:CDS |
| TCGCTCTGCTTTACTTGGGA+AGG | 0.491109 | 7.3:+30386964 | MS.gene42162:CDS |
| GCTATGAAGTCTGTGGTTGA+TGG | 0.503376 | 7.3:+30387622 | MS.gene42162:CDS |
| AGCGAAGGATATGGAAATTG+AGG | 0.506894 | 7.3:+30387498 | MS.gene42162:CDS |
| GCCTTCGCTCTGCTTTACTT+GGG | 0.510431 | 7.3:+30386960 | MS.gene42162:CDS |
| TGCGAAGGATATGGAAATTG+AGG | 0.517984 | 7.3:+30387246 | MS.gene42162:CDS |
| TGCGAAGGATATGGAAATTG+AGG | 0.517984 | 7.3:+30387309 | MS.gene42162:CDS |
| TGCGAAGGATATGGAAATTG+AGG | 0.517984 | 7.3:+30387372 | MS.gene42162:CDS |
| CAAGGGGCAGTCTGCTGCGA+AGG | 0.521712 | 7.3:+30387294 | MS.gene42162:CDS |
| GCTGCCTTTCGCTATCAAGA+TGG | 0.529136 | 7.3:+30387535 | MS.gene42162:CDS |
| GAAGGTAAATAAGAGATTGG+AGG | 0.529817 | 7.3:+30387111 | MS.gene42162:CDS |
| AAAAGTATATATACGCTCAA+GGG | 0.531845 | 7.3:+30387340 | MS.gene42162:CDS |
| GAAAGATGTGCAGGAGGTGA+AGG | 0.535532 | 7.3:+30386895 | MS.gene42162:intron |
| GAAAAGTATATATACGCTCA+AGG | 0.538571 | 7.3:+30387339 | MS.gene42162:CDS |
| TGGTGCGAAATTATCGAAAG+AGG | 0.548189 | 7.3:+30386728 | MS.gene42162:CDS |
| CAAGGGGCAATCTGCTGCGA+AGG | 0.550064 | 7.3:+30387357 | MS.gene42162:CDS |
| ACAGACTGCTCTGACTCAGT+TGG | 0.550586 | 7.3:+30387138 | MS.gene42162:CDS |
| ATTGCTCCAACATCTGCTAC+AGG | 0.552341 | 7.3:+30386687 | MS.gene42162:CDS |
| TGCAGGAGGTGAAGGAGTCT+GGG | 0.554625 | 7.3:+30386903 | MS.gene42162:intron |
| AAAGTGTAGATACACTCAAA+GGG | 0.554726 | 7.3:+30387215 | MS.gene42162:CDS |
| GGAGGTGAAGGAGTCTGGGT+TGG | 0.555934 | 7.3:+30386907 | MS.gene42162:intron |
| AAAAGTGTAGATACACTCAA+AGG | 0.556290 | 7.3:+30387214 | MS.gene42162:CDS |
| CAAGGGGCAATCCGCAGCGA+AGG | 0.556340 | 7.3:+30387483 | MS.gene42162:CDS |
| CAAAGGGAAATCTGCTGCGA+AGG | 0.558516 | 7.3:+30387231 | MS.gene42162:CDS |
| GATTGTCCTGTAGCAGATGT+TGG | 0.562417 | 7.3:-30386693 | None:intergenic |
| TGTGGTGTTCAGTCTGAAGC+TGG | 0.566521 | 7.3:+30386651 | MS.gene42162:intron |
| GAAAAGTATAGATACGCTCA+AGG | 0.571373 | 7.3:+30387276 | MS.gene42162:CDS |
| AAAACCATCTTGATAGCGAA+AGG | 0.577594 | 7.3:-30387539 | None:intergenic |
| GACCAATTCAGAGCTGTACT+GGG | 0.593790 | 7.3:+30386995 | MS.gene42162:CDS |
| TGGTTGAATTCAGTTCATCT+CGG | 0.603175 | 7.3:-30387033 | None:intergenic |
| AAAAGTATAGATACGCTCAA+GGG | 0.604119 | 7.3:+30387277 | MS.gene42162:CDS |
| AAAGCGTAGATATGCTCAAG+AGG | 0.605173 | 7.3:+30387404 | MS.gene42162:CDS |
| GCAAAGTATAGATACGCTCA+AGG | 0.611265 | 7.3:+30387465 | MS.gene42162:CDS |
| CAAAGTATAGATACGCTCAA+GGG | 0.614983 | 7.3:+30387466 | MS.gene42162:CDS |
| AAAGTATATATACGCTCAAG+GGG | 0.615609 | 7.3:+30387341 | MS.gene42162:CDS |
| TCCATCGTTTGATTTGTCGG+AGG | 0.626060 | 7.3:+30387594 | MS.gene42162:CDS |
| AAAGTATAGATACGCTCAAG+GGG | 0.633488 | 7.3:+30387278 | MS.gene42162:CDS |
| TCCCAAGTAAAGCAGAGCGA+AGG | 0.640241 | 7.3:-30386961 | None:intergenic |
| AAAGTATAGATACGCTCAAG+GGG | 0.641841 | 7.3:+30387467 | MS.gene42162:CDS |
| AAAAGCTAGTGAGGTGCTTG+TGG | 0.653025 | 7.3:+30386931 | MS.gene42162:CDS |
| GGCTGACGCTATGAAGTCTG+TGG | 0.664603 | 7.3:+30387615 | MS.gene42162:CDS |
| GCCTCCGACAAATCAAACGA+TGG | 0.667550 | 7.3:-30387595 | None:intergenic |
| AATTTCCATATCCTTCGCTG+CGG | 0.705001 | 7.3:-30387494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATAAACATTGCTATTT+TGG | + | chr7.3:30386776-30386795 | MS.gene42162:intron | 15.0% |
| !! | TATGAAGAAACAAATATTGA+AGG | + | chr7.3:30387093-30387112 | MS.gene42162:CDS | 20.0% |
| ! | AACAAAAGATATGGAAATTG+AGG | + | chr7.3:30387435-30387454 | MS.gene42162:CDS | 25.0% |
| ! | ATTGAAGGTAAATAAGAGAT+TGG | + | chr7.3:30387108-30387127 | MS.gene42162:CDS | 25.0% |
| !! | AAAAGTATATATACGCTCAA+GGG | + | chr7.3:30387340-30387359 | MS.gene42162:CDS | 25.0% |
| !! | AATTTCCATATCTTTTGTTG+CGG | - | chr7.3:30387434-30387453 | None:intergenic | 25.0% |
| !!! | GCATATAAACATTGCTATTT+TGG | + | chr7.3:30386805-30386824 | MS.gene42162:intron | 25.0% |
| !!! | GGCTATTTTCAATTTTTCTT+TGG | - | chr7.3:30387056-30387075 | None:intergenic | 25.0% |
| !!! | TTTGTTGCTTTGACAAATAT+TGG | + | chr7.3:30386627-30386646 | MS.gene42162:intron | 25.0% |
| AAAATAGCCAATGATACTCT+TGG | + | chr7.3:30387067-30387086 | MS.gene42162:CDS | 30.0% | |
| AAAGTATATATACGCTCAAG+GGG | + | chr7.3:30387341-30387360 | MS.gene42162:CDS | 30.0% | |
| AAAGTGTAGATACACTCAAA+GGG | + | chr7.3:30387215-30387234 | MS.gene42162:CDS | 30.0% | |
| ACAAATCAAACGATGGAAAT+AGG | - | chr7.3:30387591-30387610 | None:intergenic | 30.0% | |
| GAAAAAGACTGAAAATAACG+AGG | + | chr7.3:30387162-30387181 | MS.gene42162:CDS | 30.0% | |
| TATGGAAATTGAGGATTTGA+AGG | + | chr7.3:30387255-30387274 | MS.gene42162:CDS | 30.0% | |
| ! | AAAAGTATAGATACGCTCAA+GGG | + | chr7.3:30387277-30387296 | MS.gene42162:CDS | 30.0% |
| ! | AAAAGTGTAGATACACTCAA+AGG | + | chr7.3:30387214-30387233 | MS.gene42162:CDS | 30.0% |
| ! | CAGACGTTATCTTTTTATTC+TGG | + | chr7.3:30386853-30386872 | MS.gene42162:intron | 30.0% |
| ! | GAAAAGTATATATACGCTCA+AGG | + | chr7.3:30387339-30387358 | MS.gene42162:CDS | 30.0% |
| ! | TGAAAATAACGAGGTTTTTG+AGG | + | chr7.3:30387171-30387190 | MS.gene42162:CDS | 30.0% |
| !! | ATTTCCATCGTTTGATTTGT+CGG | + | chr7.3:30387591-30387610 | MS.gene42162:CDS | 30.0% |
| !!! | AACATTGCTATTTTGGTGTT+TGG | + | chr7.3:30386783-30386802 | MS.gene42162:intron | 30.0% |
| !!! | CTATCAAGATGGTTTTGATA+AGG | + | chr7.3:30387546-30387565 | MS.gene42162:CDS | 30.0% |
| AAAGTATAGATACGCTCAAG+GGG | + | chr7.3:30387278-30387297 | MS.gene42162:CDS | 35.0% | |
| CAAAGTATAGATACGCTCAA+GGG | + | chr7.3:30387466-30387485 | MS.gene42162:CDS | 35.0% | |
| GAAGGTAAATAAGAGATTGG+AGG | + | chr7.3:30387111-30387130 | MS.gene42162:CDS | 35.0% | |
| GCTTTGACAAATATTGGATG+TGG | + | chr7.3:30386633-30386652 | MS.gene42162:intron | 35.0% | |
| GGTTAATAGCGATTATTTGC+TGG | + | chr7.3:30386749-30386768 | MS.gene42162:intron | 35.0% | |
| TGGTTGAATTCAGTTCATCT+CGG | - | chr7.3:30387036-30387055 | None:intergenic | 35.0% | |
| TTTACTTGGGAAGGTGATTA+CGG | + | chr7.3:30386973-30386992 | MS.gene42162:CDS | 35.0% | |
| ! | GAAAAGTATAGATACGCTCA+AGG | + | chr7.3:30387276-30387295 | MS.gene42162:CDS | 35.0% |
| ! | TAGGATGTGAACTTGTTCTA+TGG | - | chr7.3:30387572-30387591 | None:intergenic | 35.0% |
| !! | AAAACCATCTTGATAGCGAA+AGG | - | chr7.3:30387542-30387561 | None:intergenic | 35.0% |
| !! | AAATAACGAGGTTTTTGAGG+AGG | + | chr7.3:30387174-30387193 | MS.gene42162:CDS | 35.0% |
| !! | CATATCTCCAAGAGTATCAT+TGG | - | chr7.3:30387077-30387096 | None:intergenic | 35.0% |
| !! | GATAATTTCGCACCACTTTT+TGG | - | chr7.3:30386723-30386742 | None:intergenic | 35.0% |
| AAAGCGTAGATATGCTCAAG+AGG | + | chr7.3:30387404-30387423 | MS.gene42162:CDS | 40.0% | |
| AATTTCCATATCCTTCGCTG+CGG | - | chr7.3:30387497-30387516 | None:intergenic | 40.0% | |
| AGCGAAGGATATGGAAATTG+AGG | + | chr7.3:30387498-30387517 | MS.gene42162:CDS | 40.0% | |
| GCAAAGTATAGATACGCTCA+AGG | + | chr7.3:30387465-30387484 | MS.gene42162:CDS | 40.0% | |
| GCAATCCGCAACAAAAGATA+TGG | + | chr7.3:30387426-30387445 | MS.gene42162:CDS | 40.0% | |
| GGACAATCTCAACCAAAAAG+TGG | + | chr7.3:30386708-30386727 | MS.gene42162:CDS | 40.0% | |
| TGCGAAGGATATGGAAATTG+AGG | + | chr7.3:30387246-30387265 | MS.gene42162:CDS | 40.0% | |
| TGGTGCGAAATTATCGAAAG+AGG | + | chr7.3:30386728-30386747 | MS.gene42162:CDS | 40.0% | |
| AAGCTTCACGAAAGATGTGC+AGG | + | chr7.3:30386886-30386905 | MS.gene42162:intron | 45.0% | |
| ATTGCTCCAACATCTGCTAC+AGG | + | chr7.3:30386687-30386706 | MS.gene42162:CDS | 45.0% | |
| GAAATCTGCTGCGAAGGATA+TGG | + | chr7.3:30387237-30387256 | MS.gene42162:CDS | 45.0% | |
| GACCAATTCAGAGCTGTACT+GGG | + | chr7.3:30386995-30387014 | MS.gene42162:CDS | 45.0% | |
| GATTGTCCTGTAGCAGATGT+TGG | - | chr7.3:30386696-30386715 | None:intergenic | 45.0% | |
| GCTATGAAGTCTGTGGTTGA+TGG | + | chr7.3:30387622-30387641 | MS.gene42162:CDS | 45.0% | |
| ! | AAAAGCTAGTGAGGTGCTTG+TGG | + | chr7.3:30386931-30386950 | MS.gene42162:CDS | 45.0% |
| ! | TGGGTTGGAAAAAGCTAGTG+AGG | + | chr7.3:30386922-30386941 | MS.gene42162:CDS | 45.0% |
| !! | GTTTTTGAGGAGGAGGTTGT+TGG | + | chr7.3:30387184-30387203 | MS.gene42162:CDS | 45.0% |
| !! | TAACGAGGTTTTTGAGGAGG+AGG | + | chr7.3:30387177-30387196 | MS.gene42162:CDS | 45.0% |
| !! | TCCATCGTTTGATTTGTCGG+AGG | + | chr7.3:30387594-30387613 | MS.gene42162:CDS | 45.0% |
| ACAGACTGCTCTGACTCAGT+TGG | + | chr7.3:30387138-30387157 | MS.gene42162:CDS | 50.0% | |
| AGCCTTCGCTCTGCTTTACT+TGG | + | chr7.3:30386959-30386978 | MS.gene42162:CDS | 50.0% | |
| CAAAGGGAAATCTGCTGCGA+AGG | + | chr7.3:30387231-30387250 | MS.gene42162:CDS | 50.0% | |
| CTTCACGAAAGATGTGCAGG+AGG | + | chr7.3:30386889-30386908 | MS.gene42162:intron | 50.0% | |
| GAAAGATGTGCAGGAGGTGA+AGG | + | chr7.3:30386895-30386914 | MS.gene42162:intron | 50.0% | |
| GCAATCTGCTGCGAAGGATA+TGG | + | chr7.3:30387363-30387382 | MS.gene42162:CDS | 50.0% | |
| GCCTCCGACAAATCAAACGA+TGG | - | chr7.3:30387598-30387617 | None:intergenic | 50.0% | |
| GCCTTCGCTCTGCTTTACTT+GGG | + | chr7.3:30386960-30386979 | MS.gene42162:CDS | 50.0% | |
| GCTGCCTTTCGCTATCAAGA+TGG | + | chr7.3:30387535-30387554 | MS.gene42162:CDS | 50.0% | |
| GGACCAATTCAGAGCTGTAC+TGG | + | chr7.3:30386994-30387013 | MS.gene42162:CDS | 50.0% | |
| TCCCAAGTAAAGCAGAGCGA+AGG | - | chr7.3:30386964-30386983 | None:intergenic | 50.0% | |
| TCGCTCTGCTTTACTTGGGA+AGG | + | chr7.3:30386964-30386983 | MS.gene42162:CDS | 50.0% | |
| ! | TGTGGTGTTCAGTCTGAAGC+TGG | + | chr7.3:30386651-30386670 | MS.gene42162:intron | 50.0% |
| !! | GTCCCAGTACAGCTCTGAAT+TGG | - | chr7.3:30387000-30387019 | None:intergenic | 50.0% |
| GCAATCCGCAGCGAAGGATA+TGG | + | chr7.3:30387489-30387508 | MS.gene42162:CDS | 55.0% | |
| GCAGTCTGCTGCGAAGGATA+TGG | + | chr7.3:30387300-30387319 | MS.gene42162:CDS | 55.0% | |
| GGCTGACGCTATGAAGTCTG+TGG | + | chr7.3:30387615-30387634 | MS.gene42162:CDS | 55.0% | |
| TGCAGGAGGTGAAGGAGTCT+GGG | + | chr7.3:30386903-30386922 | MS.gene42162:intron | 55.0% | |
| CAAGGGGCAATCTGCTGCGA+AGG | + | chr7.3:30387357-30387376 | MS.gene42162:CDS | 60.0% | |
| GGAGGTGAAGGAGTCTGGGT+TGG | + | chr7.3:30386907-30386926 | MS.gene42162:intron | 60.0% | |
| GTGCAGGAGGTGAAGGAGTC+TGG | + | chr7.3:30386902-30386921 | MS.gene42162:intron | 60.0% | |
| CAAGGGGCAATCCGCAGCGA+AGG | + | chr7.3:30387483-30387502 | MS.gene42162:CDS | 65.0% | |
| CAAGGGGCAGTCTGCTGCGA+AGG | + | chr7.3:30387294-30387313 | MS.gene42162:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 30386599 | 30387657 | 30386599 | ID=MS.gene42162 |
| chr7.3 | mRNA | 30386599 | 30387657 | 30386599 | ID=MS.gene42162.t1;Parent=MS.gene42162 |
| chr7.3 | exon | 30386599 | 30386601 | 30386599 | ID=MS.gene42162.t1.exon1;Parent=MS.gene42162.t1 |
| chr7.3 | CDS | 30386599 | 30386601 | 30386599 | ID=cds.MS.gene42162.t1;Parent=MS.gene42162.t1 |
| chr7.3 | exon | 30386663 | 30386749 | 30386663 | ID=MS.gene42162.t1.exon2;Parent=MS.gene42162.t1 |
| chr7.3 | CDS | 30386663 | 30386749 | 30386663 | ID=cds.MS.gene42162.t1;Parent=MS.gene42162.t1 |
| chr7.3 | exon | 30386908 | 30387657 | 30386908 | ID=MS.gene42162.t1.exon3;Parent=MS.gene42162.t1 |
| chr7.3 | CDS | 30386908 | 30387657 | 30386908 | ID=cds.MS.gene42162.t1;Parent=MS.gene42162.t1 |
| Gene Sequence |
| Protein sequence |
