Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45482.t1 | RHN76065.1 | 96.4 | 799 | 23 | 3 | 1 | 798 | 33 | 826 | 0.00E+00 | 1489.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45482.t1 | Q6DAH4 | 29.4 | 170 | 102 | 4 | 400 | 554 | 13 | 179 | 1.5e-06 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45482.t1 | G7IHP1 | 96.4 | 799 | 23 | 3 | 1 | 798 | 1 | 794 | 0.0e+00 | 1489.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene45482 | -0.831416 | 1.69E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene45482 | -0.824803 | 6.62E-54 | -1.69E-46 |
| MS.gene049611 | MS.gene45482 | 0.807446 | 5.03E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene45482 | -0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene45482 | -0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene45482 | -0.821396 | 4.13E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene45482 | -0.817973 | 2.50E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene45482 | -0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene45482 | 0.86731 | 1.50E-65 | -1.69E-46 |
| MS.gene050444 | MS.gene45482 | -0.857903 | 1.19E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene45482 | -0.831362 | 1.74E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene45482 | -0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene45482 | -0.837636 | 4.62E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene45482 | -0.812314 | 4.51E-51 | -1.69E-46 |
| MS.gene05079 | MS.gene45482 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene45482 | -0.820135 | 8.05E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene45482 | -0.820215 | 7.71E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene45482 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene45482 | 0.84267 | 2.24E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene45482 | -0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene45482 | -0.809165 | 2.17E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene45482 | 0.828134 | 1.06E-54 | -1.69E-46 |
| MS.gene051749 | MS.gene45482 | 0.806882 | 6.63E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene45482 | 0.976416 | 8.75E-142 | -1.69E-46 |
| MS.gene052870 | MS.gene45482 | -0.825014 | 5.91E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene45482 | -0.84616 | 2.59E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene45482 | -0.804135 | 2.50E-49 | -1.69E-46 |
| MS.gene053284 | MS.gene45482 | -0.803841 | 2.88E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene45482 | -0.82517 | 5.42E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene45482 | -0.808323 | 3.28E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene45482 | -0.800612 | 1.33E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene45482 | 0.841088 | 5.87E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene45482 | -0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene45482 | -0.824662 | 7.15E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene45482 | -0.804389 | 2.21E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene45482 | -0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene45482 | -0.838182 | 3.35E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene45482 | -0.844024 | 9.77E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene45482 | -0.803867 | 2.84E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene45482 | -0.853544 | 2.23E-61 | -1.69E-46 |
| MS.gene055776 | MS.gene45482 | -0.81527 | 1.01E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene45482 | -0.847874 | 8.77E-60 | -1.69E-46 |
| MS.gene055942 | MS.gene45482 | 0.808613 | 2.84E-50 | -1.69E-46 |
| MS.gene056198 | MS.gene45482 | 0.813401 | 2.61E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene45482 | -0.841906 | 3.58E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene45482 | -0.833964 | 3.94E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene45482 | -0.819575 | 1.08E-52 | -1.69E-46 |
| MS.gene056694 | MS.gene45482 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene45482 | 0.805327 | 1.41E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene45482 | 0.85252 | 4.38E-61 | -1.69E-46 |
| MS.gene056857 | MS.gene45482 | 0.815378 | 9.53E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene45482 | -0.811059 | 8.46E-51 | -1.69E-46 |
| MS.gene057717 | MS.gene45482 | 0.802103 | 6.57E-49 | -1.69E-46 |
| MS.gene057857 | MS.gene45482 | -0.809335 | 1.99E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene45482 | 0.859964 | 2.87E-63 | -1.69E-46 |
| MS.gene058382 | MS.gene45482 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene45482 | -0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene45482 | -0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene45482 | -0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene45482 | -0.83004 | 3.67E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene45482 | -0.827622 | 1.41E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene45482 | -0.83385 | 4.21E-56 | -1.69E-46 |
| MS.gene05926 | MS.gene45482 | 0.837364 | 5.43E-57 | -1.69E-46 |
| MS.gene059304 | MS.gene45482 | 0.810831 | 9.48E-51 | -1.69E-46 |
| MS.gene059315 | MS.gene45482 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene45482 | -0.831573 | 1.55E-55 | -1.69E-46 |
| MS.gene059699 | MS.gene45482 | 0.827447 | 1.56E-54 | -1.69E-46 |
| MS.gene059701 | MS.gene45482 | 0.808834 | 2.55E-50 | -1.69E-46 |
| MS.gene059703 | MS.gene45482 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene45482 | -0.800247 | 1.58E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene45482 | -0.817577 | 3.07E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene45482 | -0.830004 | 3.75E-55 | -1.69E-46 |
| MS.gene06027 | MS.gene45482 | -0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene060405 | MS.gene45482 | 0.83826 | 3.20E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene45482 | -0.806192 | 9.27E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene45482 | -0.834828 | 2.39E-56 | -1.69E-46 |
| MS.gene060823 | MS.gene45482 | 0.812863 | 3.42E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene45482 | -0.830122 | 3.51E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene45482 | 0.838977 | 2.09E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene45482 | -0.803338 | 3.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45482.t1 | MTR_2g096670 | 96.370 | 799 | 23 | 3 | 1 | 798 | 1 | 794 | 0.0 | 1566 |
| MS.gene45482.t1 | MTR_7g099710 | 39.474 | 798 | 450 | 11 | 18 | 796 | 14 | 797 | 0.0 | 566 |
| MS.gene45482.t1 | MTR_7g073075 | 46.237 | 93 | 49 | 1 | 82 | 174 | 16 | 107 | 2.08e-16 | 76.6 |
| MS.gene45482.t1 | MTR_7g063050 | 44.086 | 93 | 51 | 1 | 82 | 174 | 16 | 107 | 6.31e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45482.t1 | AT2G28780 | 49.114 | 790 | 376 | 11 | 18 | 798 | 10 | 782 | 0.0 | 702 |
| MS.gene45482.t1 | AT3G09450 | 37.992 | 787 | 439 | 15 | 19 | 781 | 6 | 767 | 8.69e-145 | 445 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACCACATTACAATAAAT+TGG | 0.110040 | 2.1:+6958498 | MS.gene45482:CDS |
| ACGAAGGTAACGACGATAAA+TGG | 0.135921 | 2.1:+6958890 | MS.gene45482:CDS |
| GTCCAGCTATGTTGAGTTTA+TGG | 0.169702 | 2.1:+6952838 | MS.gene45482:CDS |
| GAGGATGACACGTGGCTTTC+GGG | 0.213052 | 2.1:+6959876 | MS.gene45482:CDS |
| GGCACATGTTGAAGCCCTTT+TGG | 0.213590 | 2.1:-6959385 | None:intergenic |
| GTGTGTTTAGACCATGTTTA+AGG | 0.223189 | 2.1:-6958615 | None:intergenic |
| ACGACGATAAATGGGCTAAT+TGG | 0.230812 | 2.1:+6958899 | MS.gene45482:CDS |
| GTAGCTGGTGCAACACTTTA+TGG | 0.234606 | 2.1:+6952675 | MS.gene45482:CDS |
| ACATTGGGAGAGTTCATATT+TGG | 0.246253 | 2.1:-6959406 | None:intergenic |
| AGTTTCGATGATTCTTTCTA+TGG | 0.249865 | 2.1:-6959316 | None:intergenic |
| GGCTGGGCTTGGACATTTGT+TGG | 0.261014 | 2.1:-6958844 | None:intergenic |
| TGACACGTGGCTTTCGGGTT+TGG | 0.276642 | 2.1:+6959881 | MS.gene45482:CDS |
| TTCATAGTGGTTGCTATAAT+AGG | 0.277095 | 2.1:+6959586 | MS.gene45482:CDS |
| GTGGCATTTCGGCTGTGATT+GGG | 0.280433 | 2.1:+6959244 | MS.gene45482:CDS |
| GACACGTGGCTTTCGGGTTT+GGG | 0.284107 | 2.1:+6959882 | MS.gene45482:CDS |
| ATAGCAAAGAAAGTGGTTTC+TGG | 0.285067 | 2.1:+6959007 | MS.gene45482:CDS |
| GGTGGCATTTCGGCTGTGAT+TGG | 0.293729 | 2.1:+6959243 | MS.gene45482:CDS |
| AGCTTCTATTGCTGTGGCTT+TGG | 0.297296 | 2.1:+6952893 | MS.gene45482:CDS |
| AAAATGCAGGGAATGTTATT+AGG | 0.304540 | 2.1:-6952716 | None:intergenic |
| TGGGCCTGCGGGTGGCATTT+CGG | 0.304664 | 2.1:+6959233 | MS.gene45482:CDS |
| AGAGGATGACACGTGGCTTT+CGG | 0.307613 | 2.1:+6959875 | MS.gene45482:CDS |
| GTTCCTTTAGAGAAATGATT+TGG | 0.308003 | 2.1:-6952870 | None:intergenic |
| TATGCTACAATTCAAAGTTT+AGG | 0.311346 | 2.1:+6952816 | MS.gene45482:CDS |
| GCTGGGCTTGGACATTTGTT+GGG | 0.315602 | 2.1:-6958843 | None:intergenic |
| ATCATAAATGATGCTACTTT+AGG | 0.316843 | 2.1:+6952762 | MS.gene45482:CDS |
| AATCTCTCGTGCTAAGTCTT+TGG | 0.317198 | 2.1:+6958070 | MS.gene45482:CDS |
| TTGGCAGCTAGTACTGCTTT+AGG | 0.328010 | 2.1:+6953053 | MS.gene45482:CDS |
| GATAGCTAAGAGAATTTCAT+TGG | 0.329080 | 2.1:+6952956 | MS.gene45482:CDS |
| AATTTCTTCAAGACCTTTGA+TGG | 0.337569 | 2.1:-6959769 | None:intergenic |
| TCCACACTTGTTGAATCAAT+TGG | 0.347555 | 2.1:+6959432 | MS.gene45482:CDS |
| GAAGGAGTTTGGCACAAAAT+AGG | 0.348823 | 2.1:-6958798 | None:intergenic |
| TCCAGCTATGTTGAGTTTAT+GGG | 0.350617 | 2.1:+6952839 | MS.gene45482:CDS |
| TTAGACCATGTTTAAGGTCT+TGG | 0.362507 | 2.1:-6958609 | None:intergenic |
| AAATGAATAGGATGCATAAT+AGG | 0.364653 | 2.1:-6953032 | None:intergenic |
| AAAGAAAGTGGTTTCTGGTC+TGG | 0.364944 | 2.1:+6959012 | MS.gene45482:CDS |
| TCTTTACGTGGTTGTTGGCT+AGG | 0.368993 | 2.1:+6952789 | MS.gene45482:CDS |
| GATTGTGTTGGTGTATGTAT+TGG | 0.369068 | 2.1:+6952983 | MS.gene45482:CDS |
| GTTGATTGGGAATGATTTGT+AGG | 0.373147 | 2.1:-6958578 | None:intergenic |
| CATGTCTAATGATGTTGAAA+TGG | 0.374095 | 2.1:+6959842 | MS.gene45482:CDS |
| TAGCAAAACTGATTCACAAT+TGG | 0.376735 | 2.1:+6959470 | MS.gene45482:CDS |
| CGACGATAAATGGGCTAATT+GGG | 0.377900 | 2.1:+6958900 | MS.gene45482:CDS |
| AAGTGTTGCACCAGCTACTA+TGG | 0.379492 | 2.1:-6952670 | None:intergenic |
| TATTATGCATCCTATTCATT+TGG | 0.379859 | 2.1:+6953034 | MS.gene45482:CDS |
| ATTGGGCCTATCAGTCTTCA+TGG | 0.382307 | 2.1:+6958975 | MS.gene45482:CDS |
| CAATCTAATAGGAATGGAAT+TGG | 0.385293 | 2.1:+6958546 | MS.gene45482:CDS |
| TCCTTGGGCTTTAACATTTG+CGG | 0.386987 | 2.1:-6959085 | None:intergenic |
| CAATTCCATTCCTATTAGAT+TGG | 0.387246 | 2.1:-6958545 | None:intergenic |
| TGATTTCATGTGAAGGAGTT+TGG | 0.391065 | 2.1:-6958809 | None:intergenic |
| AAACTTGAATGATTTCATCT+TGG | 0.393368 | 2.1:-6959793 | None:intergenic |
| AAGAAAGTGGTTTCTGGTCT+GGG | 0.393614 | 2.1:+6959013 | MS.gene45482:CDS |
| AAACCACATTACAATAAATT+GGG | 0.395638 | 2.1:+6958499 | MS.gene45482:CDS |
| TATGTATTGGCTTATTCTAA+TGG | 0.398544 | 2.1:+6952996 | MS.gene45482:CDS |
| TTGGACATTTGTTGGGCCCT+CGG | 0.399774 | 2.1:-6958836 | None:intergenic |
| ATGTTGAGTTTATGGGCTAT+AGG | 0.405854 | 2.1:+6952846 | MS.gene45482:CDS |
| CTTTCTATGGCGAACTCGCT+TGG | 0.406770 | 2.1:-6959303 | None:intergenic |
| ATAAAGTACTCTTTCGCATT+GGG | 0.406934 | 2.1:+6958958 | MS.gene45482:CDS |
| CTTCAACGAAGCCGTATGTA+TGG | 0.407950 | 2.1:+6959213 | MS.gene45482:CDS |
| GAGGTAGATACCAATCTAAT+AGG | 0.411762 | 2.1:+6958535 | MS.gene45482:CDS |
| CTTTCGGGTTTGGGAGAAGA+TGG | 0.412988 | 2.1:+6959891 | MS.gene45482:CDS |
| AGGCTCATTATCAAAGTTAG+TGG | 0.415380 | 2.1:+6959614 | MS.gene45482:CDS |
| CGAAGGTAACGACGATAAAT+GGG | 0.417608 | 2.1:+6958891 | MS.gene45482:CDS |
| AAGTGAACTTCTACATGTTA+AGG | 0.424106 | 2.1:+6959731 | MS.gene45482:CDS |
| AAAGCCCAAGGAACGGTGAT+TGG | 0.424570 | 2.1:+6959096 | MS.gene45482:CDS |
| GTGACTCTTTACGTGGTTGT+TGG | 0.428893 | 2.1:+6952784 | MS.gene45482:CDS |
| CAGTTCCAATCACCGTTCCT+TGG | 0.432211 | 2.1:-6959101 | None:intergenic |
| TAATGAGCTTAGAAAATTTG+TGG | 0.433373 | 2.1:+6959524 | MS.gene45482:CDS |
| GAGATCACCACTAAACCTTA+TGG | 0.433380 | 2.1:+6952575 | MS.gene45482:CDS |
| GTGGCCGTAAGCTATGTTTC+AGG | 0.434352 | 2.1:+6959042 | MS.gene45482:CDS |
| GGTAATTCTTGGTGAGTTGT+TGG | 0.437818 | 2.1:-6958763 | None:intergenic |
| AGTTCCAATCACCGTTCCTT+GGG | 0.438721 | 2.1:-6959100 | None:intergenic |
| ATTAGGCTTGTAATTGAAGT+AGG | 0.441014 | 2.1:-6952699 | None:intergenic |
| GGTCCAAATCATTTCTCTAA+AGG | 0.442276 | 2.1:+6952867 | MS.gene45482:CDS |
| GATTCTTGTCACTACTTCCA+TGG | 0.446613 | 2.1:+6959172 | MS.gene45482:CDS |
| TGTTTGAGTGTGTGCATGCA+TGG | 0.447803 | 2.1:+6960035 | MS.gene45482:CDS |
| GTACTAGCTGCCAAATGAAT+AGG | 0.450169 | 2.1:-6953044 | None:intergenic |
| AATGCTAAACACTCTTTCCT+TGG | 0.451588 | 2.1:+6958667 | MS.gene45482:CDS |
| CTTTACGTGGTTGTTGGCTA+GGG | 0.455719 | 2.1:+6952790 | MS.gene45482:CDS |
| GAGATTGAAGATTCTTGTAA+AGG | 0.459077 | 2.1:+6958010 | MS.gene45482:CDS |
| AGAAAATCAAAGAAAACTTA+AGG | 0.461877 | 2.1:+6959494 | MS.gene45482:CDS |
| AGCAAAACTGATTCACAATT+GGG | 0.462198 | 2.1:+6959471 | MS.gene45482:CDS |
| ATTATTTGCTCTTCCATCAA+AGG | 0.463540 | 2.1:+6959756 | MS.gene45482:CDS |
| TTATAGCAACCACTATGAAA+TGG | 0.463626 | 2.1:-6959582 | None:intergenic |
| TGTTGAAGAAACTCACCATA+AGG | 0.464536 | 2.1:-6952590 | None:intergenic |
| AAACACTCTTTCCTTGGTGG+TGG | 0.466264 | 2.1:+6958673 | MS.gene45482:CDS |
| TCTTGGTCAAGAATGTTGAT+TGG | 0.470206 | 2.1:-6958592 | None:intergenic |
| CTTGGTCAAGAATGTTGATT+GGG | 0.470663 | 2.1:-6958591 | None:intergenic |
| CACAAATTAAATACTGCTAG+AGG | 0.471828 | 2.1:-6960108 | None:intergenic |
| CAATGAGGGAACTTGTTCAA+TGG | 0.474839 | 2.1:+6960078 | MS.gene45482:CDS |
| ATAAGCCCATGAAGACTGAT+AGG | 0.475203 | 2.1:-6958981 | None:intergenic |
| GGAACTGTGTACGGTGTGTT+GGG | 0.476790 | 2.1:+6959117 | MS.gene45482:CDS |
| CATACATACGGCTTCGTTGA+AGG | 0.483582 | 2.1:-6959212 | None:intergenic |
| GACAAGGAGCTTGGTTCGCT+TGG | 0.486715 | 2.1:-6958096 | None:intergenic |
| CACCCGCAGGCCCATACATA+CGG | 0.486745 | 2.1:-6959224 | None:intergenic |
| AATGAGGGAACTTGTTCAAT+GGG | 0.487246 | 2.1:+6960079 | MS.gene45482:CDS |
| GTATAGTGATGAAGGTGAGA+AGG | 0.487410 | 2.1:+6959968 | MS.gene45482:CDS |
| GGCTTTGGCTGCATTTGTTG+TGG | 0.488680 | 2.1:+6952908 | MS.gene45482:CDS |
| TGGAACTGTGTACGGTGTGT+TGG | 0.488951 | 2.1:+6959116 | MS.gene45482:CDS |
| AAACTCACCATAAGGTTTAG+TGG | 0.489783 | 2.1:-6952582 | None:intergenic |
| TCTCCCAATTTATTGTAATG+TGG | 0.490806 | 2.1:-6958502 | None:intergenic |
| GCCCATAAACTCAACATAGC+TGG | 0.491924 | 2.1:-6952840 | None:intergenic |
| CAACAAGTGTGGACAAACAT+TGG | 0.496700 | 2.1:-6959422 | None:intergenic |
| AACAAGTGTGGACAAACATT+GGG | 0.497246 | 2.1:-6959421 | None:intergenic |
| ATGTCTAATGATGTTGAAAT+GGG | 0.497914 | 2.1:+6959843 | MS.gene45482:CDS |
| GCTTAGAAAATTTGTGGTAG+AGG | 0.499718 | 2.1:+6959530 | MS.gene45482:CDS |
| AACATTTGCGGCCCGAAAAG+TGG | 0.502931 | 2.1:-6959073 | None:intergenic |
| CTATGGCGAACTCGCTTGGT+GGG | 0.507072 | 2.1:-6959299 | None:intergenic |
| GATAAAGTACTCTTTCGCAT+TGG | 0.507856 | 2.1:+6958957 | MS.gene45482:CDS |
| TGGCATTTCGGCTGTGATTG+GGG | 0.516872 | 2.1:+6959245 | MS.gene45482:CDS |
| TCTATGGCGAACTCGCTTGG+TGG | 0.517047 | 2.1:-6959300 | None:intergenic |
| TTCATTGGGTCAGATTGTGT+TGG | 0.518394 | 2.1:+6952971 | MS.gene45482:CDS |
| CATGATGGTGACAAGGAGCT+TGG | 0.520052 | 2.1:-6958105 | None:intergenic |
| GCTAAACACTCTTTCCTTGG+TGG | 0.523877 | 2.1:+6958670 | MS.gene45482:CDS |
| AGCCGTATGTATGGGCCTGC+GGG | 0.529646 | 2.1:+6959222 | MS.gene45482:CDS |
| CGAAAGAGTACTTTATCGCC+GGG | 0.530456 | 2.1:-6958951 | None:intergenic |
| ATAGCTAAGAGAATTTCATT+GGG | 0.530885 | 2.1:+6952957 | MS.gene45482:CDS |
| GTTTGAGTGTGTGCATGCAT+GGG | 0.535759 | 2.1:+6960036 | MS.gene45482:CDS |
| TTAGCTTGCACCATAGTAGC+TGG | 0.538892 | 2.1:+6952660 | MS.gene45482:CDS |
| GAGGAAAATACTTCTGCACT+TGG | 0.539006 | 2.1:+6958044 | MS.gene45482:CDS |
| TTGGGCCTATCAGTCTTCAT+GGG | 0.541653 | 2.1:+6958976 | MS.gene45482:CDS |
| AGATACCAATCTAATAGGAA+TGG | 0.545673 | 2.1:+6958540 | MS.gene45482:CDS |
| AGCTACTATGGTGCAAGCTA+AGG | 0.550762 | 2.1:-6952658 | None:intergenic |
| AGAGATTGAAAAGGCAATGA+GGG | 0.552190 | 2.1:+6960064 | MS.gene45482:CDS |
| TAACAAGCAAAACGAGGGTA+AGG | 0.552605 | 2.1:-6953107 | None:intergenic |
| GCGAAAGAGTACTTTATCGC+CGG | 0.552881 | 2.1:-6958952 | None:intergenic |
| TAGTGATGAAGGTGAGAAGG+AGG | 0.554892 | 2.1:+6959971 | MS.gene45482:CDS |
| ACAACCACGTATGAAAATGC+AGG | 0.556350 | 2.1:-6952729 | None:intergenic |
| GAAAAGCTCAAATCTTCTCC+CGG | 0.557561 | 2.1:+6958933 | MS.gene45482:CDS |
| TCCAATTGATTCAACAAGTG+TGG | 0.561122 | 2.1:-6959433 | None:intergenic |
| GAGAAGTTGTATAGTGATGA+AGG | 0.561390 | 2.1:+6959960 | MS.gene45482:CDS |
| GTGAATAGGATGGCATGAAG+TGG | 0.561615 | 2.1:+6958452 | MS.gene45482:intron |
| CGTATGTATGGGCCTGCGGG+TGG | 0.561768 | 2.1:+6959225 | MS.gene45482:CDS |
| TCTTGTAAAGGTAATTAGTG+AGG | 0.562334 | 2.1:+6958022 | MS.gene45482:CDS |
| TTCTTGGTGAGTTGTTGGAA+TGG | 0.566246 | 2.1:-6958758 | None:intergenic |
| TGGGACAATAGAGATTGAAA+AGG | 0.566574 | 2.1:+6960055 | MS.gene45482:CDS |
| TGAATAGGATGGCATGAAGT+GGG | 0.567763 | 2.1:+6958453 | MS.gene45482:intron |
| TTCAACGAAGCCGTATGTAT+GGG | 0.573243 | 2.1:+6959214 | MS.gene45482:CDS |
| ACAGCCGAAATGCCACCCGC+AGG | 0.576761 | 2.1:-6959237 | None:intergenic |
| GAGTTGTTGGAATGGTATGA+AGG | 0.577072 | 2.1:-6958750 | None:intergenic |
| TTTAGGTGTACTTGCTTGTG+TGG | 0.579366 | 2.1:+6953070 | MS.gene45482:CDS |
| TGTAAAGGTAATTAGTGAGG+AGG | 0.580554 | 2.1:+6958025 | MS.gene45482:CDS |
| GCCGCAAATGTTAAAGCCCA+AGG | 0.580581 | 2.1:+6959084 | MS.gene45482:CDS |
| TCTTCAACATTCCACCATTG+TGG | 0.583422 | 2.1:+6952604 | MS.gene45482:CDS |
| GAAACATAGCTTACGGCCAC+GGG | 0.584089 | 2.1:-6959039 | None:intergenic |
| TCTACCTGAAACATAGCTTA+CGG | 0.586470 | 2.1:-6959046 | None:intergenic |
| ATCAAATGTGTTGATTGAGA+AGG | 0.588852 | 2.1:-6952936 | None:intergenic |
| TACTATGGTGCAAGCTAAGG+CGG | 0.590061 | 2.1:-6952655 | None:intergenic |
| AAGCCGTATGTATGGGCCTG+CGG | 0.590070 | 2.1:+6959221 | MS.gene45482:CDS |
| CTTGACCAAGACCTTAAACA+TGG | 0.594831 | 2.1:+6958604 | MS.gene45482:CDS |
| TTTCTGGTCTGGGCTTCCCG+TGG | 0.596132 | 2.1:+6959023 | MS.gene45482:CDS |
| AGGAACAGCTTCTATTGCTG+TGG | 0.597039 | 2.1:+6952887 | MS.gene45482:CDS |
| TAGAGATTGAAAAGGCAATG+AGG | 0.600885 | 2.1:+6960063 | MS.gene45482:CDS |
| CGGTTGATGATTTCATGTGA+AGG | 0.604472 | 2.1:-6958816 | None:intergenic |
| TGAAACATAGCTTACGGCCA+CGG | 0.608815 | 2.1:-6959040 | None:intergenic |
| ACAAATTAAATACTGCTAGA+GGG | 0.609318 | 2.1:-6960107 | None:intergenic |
| ACTTACTAGGTAGCGCATGA+TGG | 0.612005 | 2.1:-6958120 | None:intergenic |
| ACGGTGATTGGAACTGTGTA+CGG | 0.612228 | 2.1:+6959108 | MS.gene45482:CDS |
| TTATTGTATAGCAAAGAAAG+TGG | 0.612494 | 2.1:+6959000 | MS.gene45482:CDS |
| AGACACTCTCTCCACAATGG+TGG | 0.614352 | 2.1:-6952615 | None:intergenic |
| AGTTGTTGGAATGGTATGAA+GGG | 0.627832 | 2.1:-6958749 | None:intergenic |
| ACTTTAGGTGACTCTTTACG+TGG | 0.633071 | 2.1:+6952777 | MS.gene45482:CDS |
| AAACTTGTGAAAATGAACCA+TGG | 0.633234 | 2.1:-6959189 | None:intergenic |
| CAACCACGTATGAAAATGCA+GGG | 0.636482 | 2.1:-6952728 | None:intergenic |
| ACATGGTCTAAACACACTTG+AGG | 0.636524 | 2.1:+6958621 | MS.gene45482:CDS |
| ACCTGGTAACAAGCAAAACG+AGG | 0.639157 | 2.1:-6953113 | None:intergenic |
| CACATGAAATCATCAACCGA+GGG | 0.643413 | 2.1:+6958820 | MS.gene45482:CDS |
| TGAAATGGGAAAGTCAAGAG+AGG | 0.644013 | 2.1:+6959857 | MS.gene45482:CDS |
| AAATGTTAAAGCCCAAGGAA+CGG | 0.649091 | 2.1:+6959089 | MS.gene45482:CDS |
| GAGAGACACTCTCTCCACAA+TGG | 0.669619 | 2.1:-6952618 | None:intergenic |
| ATTGGGAGAGAAACTTCAAG+AGG | 0.670648 | 2.1:+6958516 | MS.gene45482:CDS |
| TCACATGAAATCATCAACCG+AGG | 0.671809 | 2.1:+6958819 | MS.gene45482:CDS |
| GGTAGCGCATGATGGTGACA+AGG | 0.690763 | 2.1:-6958112 | None:intergenic |
| CAGTAAGTGAACCACCACCA+AGG | 0.716844 | 2.1:-6958684 | None:intergenic |
| CCTGGTAACAAGCAAAACGA+GGG | 0.717387 | 2.1:-6953112 | None:intergenic |
| AGTCAAGAGAGGATGACACG+TGG | 0.753312 | 2.1:+6959868 | MS.gene45482:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6952570 | 6960124 | 6952570 | ID=MS.gene45482 |
| chr2.1 | mRNA | 6952570 | 6960124 | 6952570 | ID=MS.gene45482.t1;Parent=MS.gene45482 |
| chr2.1 | exon | 6952570 | 6953133 | 6952570 | ID=MS.gene45482.t1.exon1;Parent=MS.gene45482.t1 |
| chr2.1 | CDS | 6952570 | 6953133 | 6952570 | ID=cds.MS.gene45482.t1;Parent=MS.gene45482.t1 |
| chr2.1 | exon | 6957969 | 6958136 | 6957969 | ID=MS.gene45482.t1.exon2;Parent=MS.gene45482.t1 |
| chr2.1 | CDS | 6957969 | 6958136 | 6957969 | ID=cds.MS.gene45482.t1;Parent=MS.gene45482.t1 |
| chr2.1 | exon | 6958460 | 6960124 | 6958460 | ID=MS.gene45482.t1.exon3;Parent=MS.gene45482.t1 |
| chr2.1 | CDS | 6958460 | 6960124 | 6958460 | ID=cds.MS.gene45482.t1;Parent=MS.gene45482.t1 |
| Gene Sequence |
| Protein sequence |
