Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46198.t1 | XP_013456276.1 | 77.2 | 320 | 36 | 6 | 1 | 308 | 1 | 295 | 5.80E-120 | 440.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46198.t1 | Q9T072 | 32.6 | 313 | 174 | 11 | 17 | 308 | 8 | 304 | 5.3e-21 | 103.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46198.t1 | A0A072UKT5 | 77.2 | 320 | 36 | 6 | 1 | 308 | 1 | 295 | 4.2e-120 | 440.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene46198.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene46198 | -0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene46198 | -0.815948 | 7.12E-52 | -1.69E-46 |
| MS.gene04932 | MS.gene46198 | 0.842706 | 2.19E-58 | -1.69E-46 |
| MS.gene049549 | MS.gene46198 | 0.852718 | 3.84E-61 | -1.69E-46 |
| MS.gene049609 | MS.gene46198 | -0.802754 | 4.83E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene46198 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene46198 | -0.802174 | 6.36E-49 | -1.69E-46 |
| MS.gene050647 | MS.gene46198 | 0.809259 | 2.07E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene46198 | -0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene050720 | MS.gene46198 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene46198 | -0.801673 | 8.06E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene46198 | -0.800189 | 1.62E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene46198 | 0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene051131 | MS.gene46198 | 0.834312 | 3.22E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene46198 | 0.813363 | 2.66E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene46198 | 0.831846 | 1.32E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene46198 | 0.853913 | 1.75E-61 | -1.69E-46 |
| MS.gene05244 | MS.gene46198 | 0.849657 | 2.81E-60 | -1.69E-46 |
| MS.gene052501 | MS.gene46198 | -0.804784 | 1.83E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene46198 | -0.818297 | 2.11E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene46198 | 0.847939 | 8.42E-60 | -1.69E-46 |
| MS.gene052702 | MS.gene46198 | 0.851256 | 9.99E-61 | -1.69E-46 |
| MS.gene052703 | MS.gene46198 | 0.801225 | 9.95E-49 | -1.69E-46 |
| MS.gene052705 | MS.gene46198 | 0.845275 | 4.50E-59 | -1.69E-46 |
| MS.gene052706 | MS.gene46198 | 0.814068 | 1.86E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene46198 | -0.821724 | 3.47E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene46198 | -0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene46198 | -0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene46198 | 0.810922 | 9.06E-51 | -1.69E-46 |
| MS.gene053887 | MS.gene46198 | 0.816503 | 5.35E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene46198 | 0.811733 | 6.04E-51 | -1.69E-46 |
| MS.gene054181 | MS.gene46198 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene054277 | MS.gene46198 | 0.837459 | 5.13E-57 | -1.69E-46 |
| MS.gene054706 | MS.gene46198 | 0.821461 | 3.99E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene46198 | -0.822582 | 2.19E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene46198 | 0.864549 | 1.12E-64 | -1.69E-46 |
| MS.gene05483 | MS.gene46198 | 0.819022 | 1.44E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene46198 | 0.833084 | 6.53E-56 | -1.69E-46 |
| MS.gene055206 | MS.gene46198 | -0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene46198 | 0.818055 | 2.39E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene46198 | -0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene46198 | -0.818761 | 1.66E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene46198 | -0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene46198 | -0.808367 | 3.21E-50 | -1.69E-46 |
| MS.gene056218 | MS.gene46198 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene46198 | 0.818886 | 1.55E-52 | -1.69E-46 |
| MS.gene056359 | MS.gene46198 | 0.811978 | 5.34E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene46198 | -0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene46198 | 0.991467 | 8.34E-188 | -1.69E-46 |
| MS.gene056591 | MS.gene46198 | 0.990909 | 6.29E-185 | -1.69E-46 |
| MS.gene056688 | MS.gene46198 | 0.817087 | 3.96E-52 | -1.69E-46 |
| MS.gene056694 | MS.gene46198 | 0.837505 | 4.99E-57 | -1.69E-46 |
| MS.gene056697 | MS.gene46198 | 0.836255 | 1.04E-56 | -1.69E-46 |
| MS.gene056748 | MS.gene46198 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene46198 | 0.848155 | 7.34E-60 | -1.69E-46 |
| MS.gene056920 | MS.gene46198 | 0.835922 | 1.27E-56 | -1.69E-46 |
| MS.gene057261 | MS.gene46198 | 0.832045 | 1.18E-55 | -1.69E-46 |
| MS.gene057544 | MS.gene46198 | 0.857076 | 2.09E-62 | -1.69E-46 |
| MS.gene057548 | MS.gene46198 | 0.814899 | 1.22E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene46198 | -0.809722 | 1.64E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene46198 | 0.817981 | 2.49E-52 | -1.69E-46 |
| MS.gene058093 | MS.gene46198 | 0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene46198 | 0.802572 | 5.26E-49 | -1.69E-46 |
| MS.gene058109 | MS.gene46198 | 0.807365 | 5.24E-50 | -1.69E-46 |
| MS.gene058117 | MS.gene46198 | 0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene058158 | MS.gene46198 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene46198 | 0.802025 | 6.82E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene46198 | 0.807511 | 4.88E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene46198 | -0.815839 | 7.53E-52 | -1.69E-46 |
| MS.gene058452 | MS.gene46198 | 0.800198 | 1.61E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene46198 | -0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene46198 | 0.842281 | 2.85E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene46198 | -0.817428 | 3.31E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene46198 | -0.811227 | 7.78E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene46198 | -0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene059315 | MS.gene46198 | 0.827405 | 1.59E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene46198 | 0.806164 | 9.39E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene46198 | 0.80627 | 8.93E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene46198 | -0.814422 | 1.55E-51 | -1.69E-46 |
| MS.gene059953 | MS.gene46198 | 0.843456 | 1.39E-58 | -1.69E-46 |
| MS.gene059955 | MS.gene46198 | 0.841812 | 3.79E-58 | -1.69E-46 |
| MS.gene060087 | MS.gene46198 | 0.847811 | 9.13E-60 | -1.69E-46 |
| MS.gene060405 | MS.gene46198 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene46198 | -0.818929 | 1.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46198.t1 | MTR_4g066460 | 81.620 | 321 | 28 | 6 | 1 | 308 | 1 | 303 | 1.14e-175 | 489 |
| MS.gene46198.t1 | MTR_4g066380 | 82.390 | 318 | 28 | 4 | 1 | 308 | 1 | 300 | 5.04e-175 | 487 |
| MS.gene46198.t1 | MTR_4g067010 | 78.438 | 320 | 32 | 6 | 1 | 308 | 1 | 295 | 7.28e-172 | 479 |
| MS.gene46198.t1 | MTR_6g047570 | 63.720 | 328 | 81 | 10 | 1 | 308 | 1 | 310 | 3.03e-128 | 369 |
| MS.gene46198.t1 | MTR_0011s0260 | 59.026 | 349 | 87 | 7 | 1 | 308 | 1 | 334 | 1.70e-117 | 342 |
| MS.gene46198.t1 | MTR_0011s0210 | 58.739 | 349 | 88 | 7 | 1 | 308 | 1 | 334 | 8.93e-116 | 338 |
| MS.gene46198.t1 | MTR_0250s0040 | 55.219 | 297 | 64 | 7 | 23 | 308 | 1 | 239 | 2.61e-96 | 285 |
| MS.gene46198.t1 | MTR_0246s0020 | 50.418 | 359 | 121 | 8 | 1 | 308 | 1 | 353 | 3.90e-90 | 274 |
| MS.gene46198.t1 | MTR_0246s0020 | 50.418 | 359 | 121 | 8 | 1 | 308 | 1 | 353 | 6.12e-90 | 273 |
| MS.gene46198.t1 | MTR_6g047550 | 57.317 | 246 | 63 | 8 | 1 | 222 | 1 | 228 | 5.98e-74 | 228 |
| MS.gene46198.t1 | MTR_4g098035 | 45.161 | 341 | 129 | 11 | 1 | 308 | 1 | 316 | 8.96e-73 | 228 |
| MS.gene46198.t1 | MTR_0246s0050 | 43.887 | 319 | 122 | 10 | 22 | 308 | 2 | 295 | 3.59e-65 | 207 |
| MS.gene46198.t1 | MTR_5g014520 | 43.648 | 307 | 140 | 10 | 17 | 308 | 20 | 308 | 9.28e-56 | 184 |
| MS.gene46198.t1 | MTR_5g014560 | 46.377 | 207 | 83 | 7 | 117 | 308 | 89 | 282 | 4.95e-42 | 147 |
| MS.gene46198.t1 | MTR_5g014600 | 34.954 | 329 | 159 | 9 | 13 | 308 | 7 | 313 | 1.46e-37 | 136 |
| MS.gene46198.t1 | MTR_4g097920 | 36.626 | 243 | 122 | 6 | 93 | 308 | 52 | 289 | 7.35e-36 | 131 |
| MS.gene46198.t1 | MTR_4g097920 | 36.626 | 243 | 122 | 6 | 93 | 308 | 67 | 304 | 1.13e-35 | 131 |
| MS.gene46198.t1 | MTR_8g009020 | 38.009 | 221 | 112 | 4 | 105 | 308 | 89 | 301 | 4.13e-35 | 130 |
| MS.gene46198.t1 | MTR_4g097940 | 35.802 | 243 | 124 | 6 | 93 | 308 | 67 | 304 | 6.84e-34 | 126 |
| MS.gene46198.t1 | MTR_2g010450 | 45.342 | 161 | 75 | 2 | 159 | 308 | 171 | 329 | 9.88e-34 | 127 |
| MS.gene46198.t1 | MTR_4g092700 | 41.304 | 184 | 86 | 3 | 141 | 308 | 132 | 309 | 1.26e-33 | 126 |
| MS.gene46198.t1 | MTR_4g009540 | 41.209 | 182 | 86 | 6 | 148 | 308 | 128 | 309 | 3.26e-33 | 124 |
| MS.gene46198.t1 | MTR_2g104490 | 35.417 | 240 | 135 | 5 | 78 | 308 | 58 | 286 | 6.48e-33 | 124 |
| MS.gene46198.t1 | MTR_2g104490 | 36.100 | 241 | 132 | 7 | 78 | 308 | 58 | 286 | 7.04e-33 | 123 |
| MS.gene46198.t1 | MTR_4g009540 | 41.209 | 182 | 86 | 6 | 148 | 308 | 128 | 309 | 7.22e-33 | 124 |
| MS.gene46198.t1 | MTR_8g069740 | 42.690 | 171 | 82 | 5 | 153 | 308 | 96 | 265 | 8.30e-33 | 122 |
| MS.gene46198.t1 | MTR_4g097950 | 47.531 | 162 | 68 | 4 | 164 | 308 | 67 | 228 | 1.15e-32 | 121 |
| MS.gene46198.t1 | MTR_5g014640 | 32.422 | 256 | 127 | 6 | 81 | 308 | 65 | 302 | 1.93e-32 | 122 |
| MS.gene46198.t1 | MTR_4g009110 | 36.638 | 232 | 111 | 7 | 98 | 308 | 112 | 328 | 2.69e-32 | 122 |
| MS.gene46198.t1 | MTR_2g104550 | 37.037 | 216 | 117 | 4 | 105 | 308 | 82 | 290 | 2.69e-32 | 122 |
| MS.gene46198.t1 | MTR_8g009010 | 36.098 | 205 | 99 | 3 | 105 | 308 | 77 | 250 | 7.41e-30 | 115 |
| MS.gene46198.t1 | MTR_2g104650 | 42.857 | 168 | 80 | 5 | 156 | 308 | 81 | 247 | 1.03e-28 | 111 |
| MS.gene46198.t1 | MTR_7g080780 | 39.247 | 186 | 105 | 4 | 126 | 308 | 127 | 307 | 1.29e-28 | 112 |
| MS.gene46198.t1 | MTR_7g080780 | 39.247 | 186 | 105 | 4 | 126 | 308 | 114 | 294 | 1.32e-28 | 112 |
| MS.gene46198.t1 | MTR_2g104560 | 38.323 | 167 | 91 | 5 | 153 | 308 | 38 | 203 | 1.61e-26 | 104 |
| MS.gene46198.t1 | MTR_2g104530 | 37.805 | 164 | 92 | 4 | 153 | 308 | 91 | 252 | 5.78e-24 | 99.0 |
| MS.gene46198.t1 | MTR_2g104500 | 31.222 | 221 | 144 | 5 | 95 | 308 | 31 | 250 | 4.16e-21 | 91.3 |
| MS.gene46198.t1 | MTR_2g104590 | 36.145 | 166 | 72 | 6 | 156 | 308 | 58 | 202 | 4.55e-20 | 87.4 |
| MS.gene46198.t1 | MTR_5g014550 | 44.444 | 126 | 52 | 3 | 197 | 308 | 54 | 175 | 8.38e-20 | 85.9 |
| MS.gene46198.t1 | MTR_4g009510 | 35.664 | 143 | 85 | 5 | 169 | 308 | 45 | 183 | 9.62e-17 | 77.8 |
| MS.gene46198.t1 | MTR_8g067280 | 29.940 | 167 | 86 | 2 | 158 | 293 | 443 | 609 | 1.30e-15 | 77.8 |
| MS.gene46198.t1 | MTR_7g451650 | 36.000 | 125 | 68 | 2 | 190 | 308 | 57 | 175 | 1.89e-15 | 73.6 |
| MS.gene46198.t1 | MTR_7g451650 | 36.000 | 125 | 68 | 2 | 190 | 308 | 57 | 175 | 1.95e-15 | 73.9 |
| MS.gene46198.t1 | MTR_1g072320 | 31.944 | 144 | 76 | 3 | 167 | 290 | 470 | 611 | 5.12e-15 | 75.9 |
| MS.gene46198.t1 | MTR_4g009420 | 37.815 | 119 | 66 | 2 | 190 | 308 | 65 | 175 | 1.22e-14 | 71.6 |
| MS.gene46198.t1 | MTR_4g009420 | 37.815 | 119 | 66 | 2 | 190 | 308 | 65 | 175 | 2.02e-14 | 71.2 |
| MS.gene46198.t1 | MTR_8g024770 | 29.333 | 150 | 77 | 4 | 141 | 266 | 248 | 392 | 3.79e-14 | 72.8 |
| MS.gene46198.t1 | MTR_8g024790 | 29.630 | 162 | 99 | 4 | 139 | 286 | 263 | 423 | 7.25e-14 | 72.0 |
| MS.gene46198.t1 | MTR_5g030430 | 30.539 | 167 | 91 | 4 | 152 | 293 | 474 | 640 | 9.61e-14 | 72.0 |
| MS.gene46198.t1 | MTR_7g050350 | 34.454 | 119 | 66 | 2 | 196 | 308 | 1 | 113 | 3.06e-13 | 66.2 |
| MS.gene46198.t1 | MTR_7g451650 | 34.454 | 119 | 66 | 2 | 196 | 308 | 1 | 113 | 3.06e-13 | 66.2 |
| MS.gene46198.t1 | MTR_7g117670 | 53.226 | 62 | 25 | 1 | 163 | 220 | 394 | 455 | 7.74e-13 | 69.3 |
| MS.gene46198.t1 | MTR_3g498695 | 29.677 | 155 | 89 | 2 | 169 | 303 | 300 | 454 | 1.14e-12 | 68.6 |
| MS.gene46198.t1 | MTR_3g498695 | 29.677 | 155 | 89 | 2 | 169 | 303 | 300 | 454 | 1.25e-12 | 68.6 |
| MS.gene46198.t1 | MTR_3g030700 | 30.968 | 155 | 92 | 3 | 169 | 308 | 198 | 352 | 2.10e-12 | 67.4 |
| MS.gene46198.t1 | MTR_7g096350 | 36.082 | 97 | 52 | 1 | 134 | 220 | 312 | 408 | 3.10e-12 | 67.4 |
| MS.gene46198.t1 | MTR_8g027495 | 46.479 | 71 | 38 | 0 | 167 | 237 | 458 | 528 | 3.24e-12 | 67.4 |
| MS.gene46198.t1 | MTR_8g064700 | 26.036 | 169 | 102 | 4 | 157 | 306 | 234 | 398 | 5.53e-12 | 66.2 |
| MS.gene46198.t1 | MTR_3g104100 | 27.742 | 155 | 92 | 3 | 169 | 303 | 197 | 351 | 3.51e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46198.t1 | AT4G37850 | 43.889 | 180 | 80 | 7 | 147 | 308 | 128 | 304 | 3.34e-33 | 125 |
| MS.gene46198.t1 | AT4G37850 | 43.889 | 180 | 80 | 7 | 147 | 308 | 128 | 304 | 3.34e-33 | 125 |
| MS.gene46198.t1 | AT2G22750 | 33.631 | 336 | 158 | 14 | 8 | 308 | 4 | 309 | 2.12e-30 | 117 |
| MS.gene46198.t1 | AT2G22750 | 33.631 | 336 | 158 | 14 | 8 | 308 | 4 | 309 | 2.35e-30 | 117 |
| MS.gene46198.t1 | AT2G22750 | 33.131 | 329 | 156 | 13 | 15 | 308 | 6 | 305 | 6.45e-30 | 116 |
| MS.gene46198.t1 | AT2G22760 | 38.554 | 166 | 89 | 3 | 156 | 308 | 108 | 273 | 1.29e-29 | 114 |
| MS.gene46198.t1 | AT2G22760 | 38.554 | 166 | 89 | 3 | 156 | 308 | 108 | 273 | 1.96e-29 | 114 |
| MS.gene46198.t1 | AT2G22750 | 37.788 | 217 | 97 | 6 | 125 | 308 | 70 | 281 | 2.22e-29 | 114 |
| MS.gene46198.t1 | AT2G22750 | 37.788 | 217 | 97 | 6 | 125 | 308 | 70 | 281 | 2.24e-29 | 114 |
| MS.gene46198.t1 | AT2G22770 | 38.095 | 168 | 79 | 2 | 166 | 308 | 131 | 298 | 3.12e-25 | 103 |
| MS.gene46198.t1 | AT4G17880 | 33.175 | 211 | 109 | 8 | 110 | 291 | 350 | 557 | 1.31e-17 | 83.6 |
| MS.gene46198.t1 | AT5G46760 | 35.329 | 167 | 79 | 7 | 152 | 291 | 396 | 560 | 2.37e-17 | 82.8 |
| MS.gene46198.t1 | AT1G32640 | 32.075 | 159 | 81 | 3 | 159 | 293 | 434 | 589 | 8.40e-16 | 78.2 |
| MS.gene46198.t1 | AT2G46510 | 37.931 | 116 | 54 | 3 | 159 | 264 | 377 | 484 | 8.48e-15 | 75.1 |
| MS.gene46198.t1 | AT1G01260 | 25.974 | 231 | 135 | 5 | 91 | 306 | 351 | 560 | 1.81e-13 | 71.2 |
| MS.gene46198.t1 | AT1G01260 | 25.974 | 231 | 135 | 5 | 91 | 306 | 351 | 560 | 1.81e-13 | 71.2 |
| MS.gene46198.t1 | AT1G01260 | 25.974 | 231 | 135 | 5 | 91 | 306 | 351 | 560 | 1.81e-13 | 71.2 |
| MS.gene46198.t1 | AT4G09820 | 29.193 | 161 | 97 | 3 | 118 | 278 | 321 | 464 | 4.48e-13 | 69.7 |
| MS.gene46198.t1 | AT4G16430 | 46.575 | 73 | 35 | 1 | 152 | 220 | 301 | 373 | 1.01e-12 | 68.6 |
| MS.gene46198.t1 | AT5G46830 | 54.839 | 62 | 24 | 1 | 163 | 220 | 335 | 396 | 3.50e-12 | 67.0 |
| MS.gene46198.t1 | AT5G41315 | 29.348 | 184 | 90 | 7 | 158 | 305 | 437 | 616 | 7.20e-12 | 66.2 |
| MS.gene46198.t1 | AT5G41315 | 29.348 | 184 | 90 | 7 | 158 | 305 | 440 | 619 | 7.76e-12 | 66.2 |
| MS.gene46198.t1 | AT5G41315 | 29.348 | 184 | 90 | 7 | 158 | 305 | 432 | 611 | 8.16e-12 | 66.2 |
| MS.gene46198.t1 | AT3G26744 | 29.487 | 156 | 90 | 2 | 168 | 303 | 308 | 463 | 7.37e-11 | 63.2 |
| MS.gene46198.t1 | AT3G26744 | 29.487 | 156 | 90 | 2 | 168 | 303 | 308 | 463 | 9.06e-11 | 62.8 |
| MS.gene46198.t1 | AT3G26744 | 29.487 | 156 | 90 | 2 | 168 | 303 | 308 | 463 | 9.06e-11 | 62.8 |
| MS.gene46198.t1 | AT3G26744 | 29.487 | 156 | 90 | 2 | 168 | 303 | 308 | 463 | 9.06e-11 | 62.8 |
Find 47 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTCCTAACCTTAAAA+AGG | 0.267726 | 4.4:+39664527 | MS.gene46198:CDS |
| CAGCAGCTGGTTATCTGATT+TGG | 0.268145 | 4.4:+39663673 | MS.gene46198:CDS |
| TCAAGAACAAAACAAACAAT+TGG | 0.334442 | 4.4:+39664125 | MS.gene46198:CDS |
| CAAGTGGAAGCAAGAGTGTT+AGG | 0.334987 | 4.4:+39665342 | MS.gene46198:CDS |
| GGGGCTTCTAGTTAAAATTA+TGG | 0.343764 | 4.4:+39665404 | MS.gene46198:CDS |
| GATGGTGATGGAGAAATATT+TGG | 0.350142 | 4.4:-39664231 | None:intergenic |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.357341 | 4.4:-39664503 | None:intergenic |
| ATCAGTGTCTCCAACCGAAT+TGG | 0.364748 | 4.4:+39664338 | MS.gene46198:CDS |
| CAAGAACAAAACAAACAATT+GGG | 0.390107 | 4.4:+39664126 | MS.gene46198:CDS |
| CATCTGCATCAAGAAAATTA+AGG | 0.394973 | 4.4:-39664065 | None:intergenic |
| TTGATGATACTTTCATTGCT+TGG | 0.395476 | 4.4:-39663649 | None:intergenic |
| ATCGCTGCATATGCATGGTT+TGG | 0.407010 | 4.4:-39665265 | None:intergenic |
| ACTCTTGCTTCCACTTGAAA+TGG | 0.409697 | 4.4:-39665336 | None:intergenic |
| AGAAACCTCAAAAGGGTCAT+TGG | 0.411401 | 4.4:+39664380 | MS.gene46198:CDS |
| AATAACAGTGTCTTACCCTT+TGG | 0.416567 | 4.4:+39665459 | MS.gene46198:CDS |
| GCCCCTTGTGCTCCTTGCAT+TGG | 0.417499 | 4.4:-39665386 | None:intergenic |
| CACTCAACAGAAACCTCAAA+AGG | 0.444007 | 4.4:+39664372 | MS.gene46198:CDS |
| TAGGAAAACAAGTGTTGATT+CGG | 0.449123 | 4.4:+39665361 | MS.gene46198:CDS |
| TGCAAGAGCAATGAAGCTTT+GGG | 0.460124 | 4.4:-39664502 | None:intergenic |
| AAAGAGGAGTTAGATGGTGA+TGG | 0.464747 | 4.4:-39664243 | None:intergenic |
| GATAACATTGAATGTGTTGT+TGG | 0.466089 | 4.4:+39665309 | MS.gene46198:CDS |
| TGACTTGCTGAGATCATTTG+TGG | 0.473303 | 4.4:-39664157 | None:intergenic |
| AACTGAAAAGAGGAGTTAGA+TGG | 0.496291 | 4.4:-39664249 | None:intergenic |
| GCTGAGATCATTTGTGGAAG+TGG | 0.497595 | 4.4:-39664151 | None:intergenic |
| AGCAAAAGGCCTCGTGCTCA+TGG | 0.502148 | 4.4:+39664435 | MS.gene46198:CDS |
| GGTAGCTACCTGAGCAATGA+TGG | 0.511294 | 4.4:-39665502 | None:intergenic |
| AAGGCCTCGTGCTCATGGTA+AGG | 0.535577 | 4.4:+39664440 | MS.gene46198:CDS |
| TTCTTGATGCAGATGTGGGA+GGG | 0.544131 | 4.4:+39664073 | MS.gene46198:CDS |
| CGACATTACCATCATTGCTC+AGG | 0.544333 | 4.4:+39665494 | MS.gene46198:CDS |
| GTTGATTCGGTTCCAATGCA+AGG | 0.545125 | 4.4:+39665374 | MS.gene46198:CDS |
| GTTCCAATGCAAGGAGCACA+AGG | 0.563766 | 4.4:+39665383 | MS.gene46198:CDS |
| TCTTCATCGCTGCATATGCA+TGG | 0.570607 | 4.4:-39665270 | None:intergenic |
| AAGTATCATCAATCAGCAGC+TGG | 0.573007 | 4.4:+39663660 | MS.gene46198:CDS |
| TTTCTTGATGCAGATGTGGG+AGG | 0.583981 | 4.4:+39664072 | MS.gene46198:CDS |
| TGGTATTTGAAACTGAAAAG+AGG | 0.585974 | 4.4:-39664259 | None:intergenic |
| ACTCAACAGAAACCTCAAAA+GGG | 0.587077 | 4.4:+39664373 | MS.gene46198:CDS |
| GTCGAGTGTAGAATCTCCAA+AGG | 0.590011 | 4.4:-39665475 | None:intergenic |
| TCCAATGCAAGGAGCACAAG+GGG | 0.595381 | 4.4:+39665385 | MS.gene46198:CDS |
| TGTTGGTTCACCATTTCAAG+TGG | 0.611743 | 4.4:+39665326 | MS.gene46198:CDS |
| TCATGGTAAGGATCACATCA+TGG | 0.611981 | 4.4:+39664452 | MS.gene46198:CDS |
| TCGAGTGTAGAATCTCCAAA+GGG | 0.615421 | 4.4:-39665474 | None:intergenic |
| CTGCATATGCATGGTTTGGT+CGG | 0.617639 | 4.4:-39665261 | None:intergenic |
| CGAATACAATATATTTGCTG+AGG | 0.624364 | 4.4:+39664035 | MS.gene46198:CDS |
| TGAAGATTCGTCATCATGTG+AGG | 0.642706 | 4.4:+39665287 | MS.gene46198:CDS |
| TTCCAATGCAAGGAGCACAA+GGG | 0.644827 | 4.4:+39665384 | MS.gene46198:CDS |
| AAGAACAAAACAAACAATTG+GGG | 0.650416 | 4.4:+39664127 | MS.gene46198:CDS |
| TGATCCTTACCATGAGCACG+AGG | 0.705697 | 4.4:-39664444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATATTTTGAAATATTT+AGG | + | chr4.4:39664713-39664732 | MS.gene46198:intron | 10.0% |
| !!! | TTTATTATTTTTCTTTTAGA+TGG | + | chr4.4:39665158-39665177 | MS.gene46198:intron | 10.0% |
| !! | AAAAAAAAATCTTGAAGACT+TGG | - | chr4.4:39663907-39663926 | None:intergenic | 20.0% |
| !! | ATACTTTGATCATATGTAAA+GGG | - | chr4.4:39664772-39664791 | None:intergenic | 20.0% |
| !! | ATTTGACATATAATTATGAG+CGG | + | chr4.4:39665057-39665076 | MS.gene46198:intron | 20.0% |
| !! | CCTTAAATAAGAATAAACAT+AGG | + | chr4.4:39663862-39663881 | MS.gene46198:intron | 20.0% |
| !! | TATACATGACATATATGAAT+TGG | - | chr4.4:39664642-39664661 | None:intergenic | 20.0% |
| !! | TGTATATTGTTTGTGTATAT+AGG | - | chr4.4:39664991-39665010 | None:intergenic | 20.0% |
| !!! | CCTATGTTTATTCTTATTTA+AGG | - | chr4.4:39663865-39663884 | None:intergenic | 20.0% |
| !!! | CTTACATTTAACTTAATCAA+TGG | - | chr4.4:39663777-39663796 | None:intergenic | 20.0% |
| !!! | GAACTTTTATTTTTTTTTGC+AGG | + | chr4.4:39664005-39664024 | MS.gene46198:intron | 20.0% |
| !!! | GTTTATTCTTATTTAAGGTT+AGG | - | chr4.4:39663860-39663879 | None:intergenic | 20.0% |
| !!! | TTACATAACATACCTTTTTA+AGG | - | chr4.4:39664542-39664561 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTGCAGGAAA+TGG | + | chr4.4:39664011-39664030 | MS.gene46198:intron | 20.0% |
| !!! | TTTTTTCAGACAATAATTGA+TGG | + | chr4.4:39663925-39663944 | MS.gene46198:intron | 20.0% |
| ! | AAGAACAAAACAAACAATTG+GGG | + | chr4.4:39664127-39664146 | MS.gene46198:CDS | 25.0% |
| ! | CAAGAACAAAACAAACAATT+GGG | + | chr4.4:39664126-39664145 | MS.gene46198:CDS | 25.0% |
| ! | CACAAAAGTTGTCAAAAAAA+TGG | - | chr4.4:39664826-39664845 | None:intergenic | 25.0% |
| ! | CATACTTTGATCATATGTAA+AGG | - | chr4.4:39664773-39664792 | None:intergenic | 25.0% |
| ! | TAAAATTTGCACAAAAACCA+AGG | - | chr4.4:39664900-39664919 | None:intergenic | 25.0% |
| ! | TAATCAACCATCTTTGAATT+TGG | - | chr4.4:39663738-39663757 | None:intergenic | 25.0% |
| ! | TATATTATTTGTCTCAACGT+TGG | + | chr4.4:39663952-39663971 | MS.gene46198:intron | 25.0% |
| ! | TCAAGAACAAAACAAACAAT+TGG | + | chr4.4:39664125-39664144 | MS.gene46198:CDS | 25.0% |
| !! | ATTCTAAGAGTTAGCTAATA+GGG | - | chr4.4:39664575-39664594 | None:intergenic | 25.0% |
| !! | GATTTGGTAAGAAAATCAAA+AGG | + | chr4.4:39663689-39663708 | MS.gene46198:intron | 25.0% |
| !! | GTGATTCATATTTTCCAATT+CGG | - | chr4.4:39664355-39664374 | None:intergenic | 25.0% |
| !!! | ATGCTATTTTACTCAATCAT+AGG | + | chr4.4:39663818-39663837 | MS.gene46198:intron | 25.0% |
| !!! | GTGTTATTTGAACAACTATT+TGG | - | chr4.4:39664967-39664986 | None:intergenic | 25.0% |
| !!! | TAACATACCTTTTTAAGGTT+AGG | - | chr4.4:39664537-39664556 | None:intergenic | 25.0% |
| CATCTGCATCAAGAAAATTA+AGG | - | chr4.4:39664068-39664087 | None:intergenic | 30.0% | |
| GATAACATTGAATGTGTTGT+TGG | + | chr4.4:39665309-39665328 | MS.gene46198:CDS | 30.0% | |
| TAGGTCTCAAATAGATTTGT+AGG | + | chr4.4:39663881-39663900 | MS.gene46198:intron | 30.0% | |
| TCTTGTTCCTAACCTTAAAA+AGG | + | chr4.4:39664527-39664546 | MS.gene46198:CDS | 30.0% | |
| ! | AATTTTCTTGATGCAGATGT+GGG | + | chr4.4:39664069-39664088 | MS.gene46198:CDS | 30.0% |
| ! | CGAATACAATATATTTGCTG+AGG | + | chr4.4:39664035-39664054 | MS.gene46198:CDS | 30.0% |
| ! | GATTCTAAGAGTTAGCTAAT+AGG | - | chr4.4:39664576-39664595 | None:intergenic | 30.0% |
| ! | TAATTTTCTTGATGCAGATG+TGG | + | chr4.4:39664068-39664087 | MS.gene46198:CDS | 30.0% |
| ! | TGGTATTTGAAACTGAAAAG+AGG | - | chr4.4:39664262-39664281 | None:intergenic | 30.0% |
| ! | TTCATATTTTCCAATTCGGT+TGG | - | chr4.4:39664351-39664370 | None:intergenic | 30.0% |
| ! | TTGATGATACTTTCATTGCT+TGG | - | chr4.4:39663652-39663671 | None:intergenic | 30.0% |
| !! | TAGGAAAACAAGTGTTGATT+CGG | + | chr4.4:39665361-39665380 | MS.gene46198:CDS | 30.0% |
| !!! | ATTCTCTTTTGAGTTACTAG+GGG | - | chr4.4:39664310-39664329 | None:intergenic | 30.0% |
| !!! | CATTCTCTTTTGAGTTACTA+GGG | - | chr4.4:39664311-39664330 | None:intergenic | 30.0% |
| !!! | TCATTCTCTTTTGAGTTACT+AGG | - | chr4.4:39664312-39664331 | None:intergenic | 30.0% |
| !!! | TTTTTTCCACAACTTCCAAT+CGG | - | chr4.4:39665236-39665255 | None:intergenic | 30.0% |
| AACTGAAAAGAGGAGTTAGA+TGG | - | chr4.4:39664252-39664271 | None:intergenic | 35.0% | |
| AATAACAGTGTCTTACCCTT+TGG | + | chr4.4:39665459-39665478 | MS.gene46198:CDS | 35.0% | |
| ACTCAACAGAAACCTCAAAA+GGG | + | chr4.4:39664373-39664392 | MS.gene46198:CDS | 35.0% | |
| ACTTTACCTCTTTATTGCCT+TGG | + | chr4.4:39664880-39664899 | MS.gene46198:intron | 35.0% | |
| CAAAAACCAAGGCAATAAAG+AGG | - | chr4.4:39664889-39664908 | None:intergenic | 35.0% | |
| CATCTTTGAATTTGGAAAGC+AGG | - | chr4.4:39663730-39663749 | None:intergenic | 35.0% | |
| CCAAAACCTCAAAAAGCAAA+AGG | + | chr4.4:39664421-39664440 | MS.gene46198:CDS | 35.0% | |
| CTGCTTTCCAAATTCAAAGA+TGG | + | chr4.4:39663728-39663747 | MS.gene46198:intron | 35.0% | |
| GAAAGAGCTTAAAAACCGAT+TGG | + | chr4.4:39665218-39665237 | MS.gene46198:CDS | 35.0% | |
| TAAAAACCGATTGGAAGTTG+TGG | + | chr4.4:39665227-39665246 | MS.gene46198:CDS | 35.0% | |
| TACTCAATCATAGGTCTCAA+GGG | + | chr4.4:39663827-39663846 | MS.gene46198:intron | 35.0% | |
| TTACTCAATCATAGGTCTCA+AGG | + | chr4.4:39663826-39663845 | MS.gene46198:intron | 35.0% | |
| TTGAATTTGGAAAGCAGGAA+AGG | - | chr4.4:39663725-39663744 | None:intergenic | 35.0% | |
| ! | ATTTTCCAATGACCCTTTTG+AGG | - | chr4.4:39664388-39664407 | None:intergenic | 35.0% |
| ! | GGGGCTTCTAGTTAAAATTA+TGG | + | chr4.4:39665404-39665423 | MS.gene46198:CDS | 35.0% |
| !! | GATGGTGATGGAGAAATATT+TGG | - | chr4.4:39664234-39664253 | None:intergenic | 35.0% |
| !!! | CCTTTTGCTTTTTGAGGTTT+TGG | - | chr4.4:39664424-39664443 | None:intergenic | 35.0% |
| !!! | TTCTCTTTTGAGTTACTAGG+GGG | - | chr4.4:39664309-39664328 | None:intergenic | 35.0% |
| AAAGAGGAGTTAGATGGTGA+TGG | - | chr4.4:39664246-39664265 | None:intergenic | 40.0% | |
| AAGTATCATCAATCAGCAGC+TGG | + | chr4.4:39663660-39663679 | MS.gene46198:CDS | 40.0% | |
| ACTCTTGCTTCCACTTGAAA+TGG | - | chr4.4:39665339-39665358 | None:intergenic | 40.0% | |
| AGAAACCTCAAAAGGGTCAT+TGG | + | chr4.4:39664380-39664399 | MS.gene46198:CDS | 40.0% | |
| CACTCAACAGAAACCTCAAA+AGG | + | chr4.4:39664372-39664391 | MS.gene46198:CDS | 40.0% | |
| TCATGGTAAGGATCACATCA+TGG | + | chr4.4:39664452-39664471 | MS.gene46198:CDS | 40.0% | |
| TCGAGTGTAGAATCTCCAAA+GGG | - | chr4.4:39665477-39665496 | None:intergenic | 40.0% | |
| TGAAGATTCGTCATCATGTG+AGG | + | chr4.4:39665287-39665306 | MS.gene46198:CDS | 40.0% | |
| TGCAAGAGCAATGAAGCTTT+GGG | - | chr4.4:39664505-39664524 | None:intergenic | 40.0% | |
| ! | AGTTACTAGGGGGTGAATTT+TGG | - | chr4.4:39664299-39664318 | None:intergenic | 40.0% |
| ! | GTTACTAGGGGGTGAATTTT+GGG | - | chr4.4:39664298-39664317 | None:intergenic | 40.0% |
| ! | TTACTAGGGGGTGAATTTTG+GGG | - | chr4.4:39664297-39664316 | None:intergenic | 40.0% |
| !! | TGACTTGCTGAGATCATTTG+TGG | - | chr4.4:39664160-39664179 | None:intergenic | 40.0% |
| !! | TGTTGGTTCACCATTTCAAG+TGG | + | chr4.4:39665326-39665345 | MS.gene46198:CDS | 40.0% |
| !! | TTTTGGGGGTTGTCAAAAGA+TGG | - | chr4.4:39664282-39664301 | None:intergenic | 40.0% |
| ATCAGTGTCTCCAACCGAAT+TGG | + | chr4.4:39664338-39664357 | MS.gene46198:CDS | 45.0% | |
| ATCGCTGCATATGCATGGTT+TGG | - | chr4.4:39665268-39665287 | None:intergenic | 45.0% | |
| CAGCAGCTGGTTATCTGATT+TGG | + | chr4.4:39663673-39663692 | MS.gene46198:CDS | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | - | chr4.4:39664506-39664525 | None:intergenic | 45.0% | |
| GCTGAGATCATTTGTGGAAG+TGG | - | chr4.4:39664154-39664173 | None:intergenic | 45.0% | |
| GTCGAGTGTAGAATCTCCAA+AGG | - | chr4.4:39665478-39665497 | None:intergenic | 45.0% | |
| TCTTCATCGCTGCATATGCA+TGG | - | chr4.4:39665273-39665292 | None:intergenic | 45.0% | |
| TTCTTGATGCAGATGTGGGA+GGG | + | chr4.4:39664073-39664092 | MS.gene46198:CDS | 45.0% | |
| TTTCTTGATGCAGATGTGGG+AGG | + | chr4.4:39664072-39664091 | MS.gene46198:CDS | 45.0% | |
| ! | TACTAGGGGGTGAATTTTGG+GGG | - | chr4.4:39664296-39664315 | None:intergenic | 45.0% |
| ! | TTCCAATGCAAGGAGCACAA+GGG | + | chr4.4:39665384-39665403 | MS.gene46198:CDS | 45.0% |
| !! | CAAGTGGAAGCAAGAGTGTT+AGG | + | chr4.4:39665342-39665361 | MS.gene46198:CDS | 45.0% |
| !! | CTGCATATGCATGGTTTGGT+CGG | - | chr4.4:39665264-39665283 | None:intergenic | 45.0% |
| !! | GTTGATTCGGTTCCAATGCA+AGG | + | chr4.4:39665374-39665393 | MS.gene46198:CDS | 45.0% |
| !!! | ACGAGGCCTTTTGCTTTTTG+AGG | - | chr4.4:39664430-39664449 | None:intergenic | 45.0% |
| !!! | TTATTTTTTTTTGTAAATTT+TGG | + | chr4.4:39664922-39664941 | MS.gene46198:intron | 5.0% |
| !!! | TTTATATTTTGAAATATTTA+GGG | + | chr4.4:39664714-39664733 | MS.gene46198:intron | 5.0% |
| TGATCCTTACCATGAGCACG+AGG | - | chr4.4:39664447-39664466 | None:intergenic | 50.0% | |
| ! | GTTCCAATGCAAGGAGCACA+AGG | + | chr4.4:39665383-39665402 | MS.gene46198:CDS | 50.0% |
| ! | TCCAATGCAAGGAGCACAAG+GGG | + | chr4.4:39665385-39665404 | MS.gene46198:CDS | 50.0% |
| AAGGCCTCGTGCTCATGGTA+AGG | + | chr4.4:39664440-39664459 | MS.gene46198:CDS | 55.0% | |
| AGCAAAAGGCCTCGTGCTCA+TGG | + | chr4.4:39664435-39664454 | MS.gene46198:CDS | 55.0% | |
| GCCCCTTGTGCTCCTTGCAT+TGG | - | chr4.4:39665389-39665408 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39663632 | 39665515 | 39663632 | ID=MS.gene46198 |
| chr4.4 | mRNA | 39663632 | 39665515 | 39663632 | ID=MS.gene46198.t1;Parent=MS.gene46198 |
| chr4.4 | exon | 39663632 | 39663694 | 39663632 | ID=MS.gene46198.t1.exon1;Parent=MS.gene46198.t1 |
| chr4.4 | CDS | 39663632 | 39663694 | 39663632 | ID=cds.MS.gene46198.t1;Parent=MS.gene46198.t1 |
| chr4.4 | exon | 39664027 | 39664548 | 39664027 | ID=MS.gene46198.t1.exon2;Parent=MS.gene46198.t1 |
| chr4.4 | CDS | 39664027 | 39664548 | 39664027 | ID=cds.MS.gene46198.t1;Parent=MS.gene46198.t1 |
| chr4.4 | exon | 39665177 | 39665515 | 39665177 | ID=MS.gene46198.t1.exon3;Parent=MS.gene46198.t1 |
| chr4.4 | CDS | 39665177 | 39665515 | 39665177 | ID=cds.MS.gene46198.t1;Parent=MS.gene46198.t1 |
| Gene Sequence |
| Protein sequence |
