AlfalfaGEDB | MS.gene46355

M. sativa cultivar XinJiangDaYe / MS.gene46355

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46355.t1	AES90838.1	93.8	81	5	0	1	81	1	81	9.40E-30	139

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46355.t1	G7JHL7	93.8	81	5	0	1	81	1	81	6.8e-30	139.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049653	MS.gene46355	0.804538	2.06E-49	-1.69E-46
MS.gene049861	MS.gene46355	0.835705	1.44E-56	-1.69E-46
MS.gene050114	MS.gene46355	0.80209	6.62E-49	-1.69E-46
MS.gene050277	MS.gene46355	0.821201	4.58E-53	-1.69E-46
MS.gene050288	MS.gene46355	0.853017	3.15E-61	-1.69E-46
MS.gene050317	MS.gene46355	0.821298	4.35E-53	-1.69E-46
MS.gene050320	MS.gene46355	0.857451	1.62E-62	-1.69E-46
MS.gene050752	MS.gene46355	0.84742	1.17E-59	-1.69E-46
MS.gene050955	MS.gene46355	0.819198	1.32E-52	-1.69E-46
MS.gene051003	MS.gene46355	0.811497	6.80E-51	-1.69E-46
MS.gene051245	MS.gene46355	0.829995	3.77E-55	-1.69E-46
MS.gene051343	MS.gene46355	0.807286	5.44E-50	-1.69E-46
MS.gene051676	MS.gene46355	0.816043	6.78E-52	-1.69E-46
MS.gene051746	MS.gene46355	0.81094	8.98E-51	-1.69E-46
MS.gene051748	MS.gene46355	0.827512	1.50E-54	-1.69E-46
MS.gene051756	MS.gene46355	0.821625	3.65E-53	-1.69E-46
MS.gene051902	MS.gene46355	0.805676	1.19E-49	-1.69E-46
MS.gene051903	MS.gene46355	0.845975	2.90E-59	-1.69E-46
MS.gene051975	MS.gene46355	0.844891	5.71E-59	-1.69E-46
MS.gene052434	MS.gene46355	0.827182	1.80E-54	-1.69E-46
MS.gene052818	MS.gene46355	-0.821171	4.65E-53	-1.69E-46
MS.gene052947	MS.gene46355	0.806754	7.05E-50	-1.69E-46
MS.gene053058	MS.gene46355	0.828919	6.88E-55	-1.69E-46
MS.gene053109	MS.gene46355	0.835828	1.34E-56	-1.69E-46
MS.gene053189	MS.gene46355	0.80434	2.26E-49	-1.69E-46
MS.gene053298	MS.gene46355	0.835816	1.35E-56	-1.69E-46
MS.gene053564	MS.gene46355	0.805992	1.02E-49	-1.69E-46
MS.gene053879	MS.gene46355	0.80377	2.97E-49	-1.69E-46
MS.gene053952	MS.gene46355	0.802486	5.48E-49	-1.69E-46
MS.gene053963	MS.gene46355	0.831665	1.47E-55	-1.69E-46
MS.gene054222	MS.gene46355	0.809158	2.17E-50	-1.69E-46
MS.gene054403	MS.gene46355	0.84834	6.52E-60	-1.69E-46
MS.gene054536	MS.gene46355	0.806442	8.21E-50	-1.69E-46
MS.gene05469	MS.gene46355	0.856267	3.61E-62	-1.69E-46
MS.gene055603	MS.gene46355	0.803366	3.61E-49	-1.69E-46
MS.gene056605	MS.gene46355	0.802582	5.24E-49	-1.69E-46
MS.gene056631	MS.gene46355	0.822217	2.67E-53	-1.69E-46
MS.gene056752	MS.gene46355	0.820461	6.78E-53	-1.69E-46
MS.gene056787	MS.gene46355	0.803221	3.87E-49	-1.69E-46
MS.gene056849	MS.gene46355	0.812331	4.47E-51	-1.69E-46
MS.gene056975	MS.gene46355	0.815671	8.20E-52	-1.69E-46
MS.gene056986	MS.gene46355	0.860948	1.45E-63	-1.69E-46
MS.gene057094	MS.gene46355	0.822339	2.50E-53	-1.69E-46
MS.gene057234	MS.gene46355	0.843262	1.56E-58	-1.69E-46
MS.gene057452	MS.gene46355	-0.812726	3.67E-51	-1.69E-46
MS.gene05781	MS.gene46355	0.830242	3.28E-55	-1.69E-46
MS.gene057999	MS.gene46355	0.965179	2.86E-124	-1.69E-46
MS.gene058055	MS.gene46355	0.817711	2.86E-52	-1.69E-46
MS.gene058074	MS.gene46355	0.83666	8.21E-57	-1.69E-46
MS.gene058238	MS.gene46355	0.8404	8.90E-58	-1.69E-46
MS.gene058592	MS.gene46355	0.813081	3.07E-51	-1.69E-46
MS.gene059050	MS.gene46355	0.80104	1.09E-48	-1.69E-46
MS.gene059146	MS.gene46355	0.816	6.93E-52	-1.69E-46
MS.gene059360	MS.gene46355	0.814339	1.62E-51	-1.69E-46
MS.gene059830	MS.gene46355	0.804701	1.90E-49	-1.69E-46
MS.gene059872	MS.gene46355	-0.817352	3.45E-52	-1.69E-46
MS.gene06001	MS.gene46355	0.807266	5.50E-50	-1.69E-46
MS.gene06011	MS.gene46355	0.861224	1.19E-63	-1.69E-46
MS.gene060297	MS.gene46355	0.811174	7.99E-51	-1.69E-46
MS.gene060586	MS.gene46355	0.814898	1.22E-51	-1.69E-46
MS.gene060763	MS.gene46355	0.817799	2.73E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46355.t1	MTR_4g098710	93.827	81	5	0	1	81	1	81	2.42e-40	127

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 14 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGAATTCAGAATCTTATC+TGG	0.320719	8.4:-24315577	None:intergenic
GTGATCAGGATGAACAGTTT+AGG	0.424887	8.4:+24315647	MS.gene46355:CDS
TGTTCATCCTGATCACAGTT+TGG	0.447960	8.4:-24315640	None:intergenic
TGTGTTGCCAAACTGTGATC+AGG	0.505518	8.4:+24315633	MS.gene46355:CDS
TCACTAGACTCCTTCTTGCT+CGG	0.520514	8.4:-24315511	None:intergenic
AAGATCGGATCGATTGCAAT+GGG	0.546672	8.4:+24315712	MS.gene46355:CDS
TCTCAGAGCAAGAAATCAGA+TGG	0.548303	8.4:+24315607	MS.gene46355:CDS
ATCGATTGCAATGGGAGTCT+AGG	0.564890	8.4:+24315720	MS.gene46355:CDS
CAAGATCGGATCGATTGCAA+TGG	0.580943	8.4:+24315711	MS.gene46355:CDS
GAATCAACTGATGTCAAGAT+CGG	0.588286	8.4:+24315697	MS.gene46355:CDS
CAAGAAGGAGTCTAGTGAAG+TGG	0.591426	8.4:+24315516	MS.gene46355:CDS
TAGCAAGTCACCGAGCAAGA+AGG	0.600583	8.4:+24315501	MS.gene46355:CDS
CTCAGAGCAAGAAATCAGAT+GGG	0.605996	8.4:+24315608	MS.gene46355:CDS
TCAGAGCAAGAAATCAGATG+GGG	0.702066	8.4:+24315609	MS.gene46355:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TTTGAATTCAGAATCTTATC+TGG	-	chr8.4:24315580-24315599	None:intergenic	25.0%
	GAATCAACTGATGTCAAGAT+CGG	+	chr8.4:24315697-24315716	MS.gene46355:CDS	35.0%
	AAGATCGGATCGATTGCAAT+GGG	+	chr8.4:24315712-24315731	MS.gene46355:CDS	40.0%
	CTCAGAGCAAGAAATCAGAT+GGG	+	chr8.4:24315608-24315627	MS.gene46355:CDS	40.0%
	GTGATCAGGATGAACAGTTT+AGG	+	chr8.4:24315647-24315666	MS.gene46355:CDS	40.0%
	TCAGAGCAAGAAATCAGATG+GGG	+	chr8.4:24315609-24315628	MS.gene46355:CDS	40.0%
	TCTCAGAGCAAGAAATCAGA+TGG	+	chr8.4:24315607-24315626	MS.gene46355:CDS	40.0%
	TGTTCATCCTGATCACAGTT+TGG	-	chr8.4:24315643-24315662	None:intergenic	40.0%
	CAAGAAGGAGTCTAGTGAAG+TGG	+	chr8.4:24315516-24315535	MS.gene46355:CDS	45.0%
	CAAGATCGGATCGATTGCAA+TGG	+	chr8.4:24315711-24315730	MS.gene46355:CDS	45.0%
	TCACTAGACTCCTTCTTGCT+CGG	-	chr8.4:24315514-24315533	None:intergenic	45.0%
	TGTGTTGCCAAACTGTGATC+AGG	+	chr8.4:24315633-24315652	MS.gene46355:CDS	45.0%
	TAGCAAGTCACCGAGCAAGA+AGG	+	chr8.4:24315501-24315520	MS.gene46355:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	24315496	24315741	24315496	ID=MS.gene46355
chr8.4	mRNA	24315496	24315741	24315496	ID=MS.gene46355.t1;Parent=MS.gene46355
chr8.4	exon	24315496	24315741	24315496	ID=MS.gene46355.t1.exon1;Parent=MS.gene46355.t1
chr8.4	CDS	24315496	24315741	24315496	ID=cds.MS.gene46355.t1;Parent=MS.gene46355.t1

Gene Sequence	>MS.gene46355 ATGGATAGCAAGTCACCGAGCAAGAAGGAGTCTAGTGAAGTGGCAGCACGCGAGTCGCTTATTGCTATTTCTAACTCTTCACCAGATAAGATTCTGAATTCAAATTCTGTTTCTCAGAGCAAGAAATCAGATGGGGCTGTGTTGCCAAACTGTGATCAGGATGAACAGTTTAGGTCTGAACTGATTTCAATTTCGTATGCTGAATCAACTGATGTCAAGATCGGATCGATTGCAATGGGAGTCTAG
Protein sequence	>MS.gene46355.t1 MDSKSPSKKESSEVAARESLIAISNSSPDKILNSNSVSQSKKSDGAVLPNCDQDEQFRSELISISYAESTDVKIGSIAMGV