Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50164.t1 | RHN80631.1 | 86.5 | 912 | 123 | 0 | 19 | 930 | 83 | 994 | 0.00E+00 | 1402.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50164.t1 | Q9NW13 | 41.3 | 491 | 269 | 9 | 248 | 728 | 112 | 593 | 8.3e-54 | 213.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50164.t1 | G7I6T9 | 86.5 | 912 | 123 | 0 | 19 | 930 | 51 | 962 | 0.0e+00 | 1402.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056403 | MS.gene50164 | 0.801372 | 9.29E-49 | -1.69E-46 |
MS.gene057360 | MS.gene50164 | 0.800862 | 1.18E-48 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50164.t1 | MTR_1g080390 | 94.627 | 912 | 49 | 0 | 19 | 930 | 51 | 962 | 0.0 | 1763 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50164.t1 | AT2G21440 | 46.403 | 987 | 421 | 18 | 19 | 930 | 50 | 1003 | 0.0 | 746 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCTTCCTTTGGTTCTTT+TGG | 0.103039 | 5.4:-62801874 | None:intergenic |
TCTGTTTCCTTGGAAGTTTC+AGG | 0.151548 | 5.4:-62806925 | None:intergenic |
TGCTTCTGGGATGGGTATTT+TGG | 0.157301 | 5.4:+62807229 | MS.gene50164:CDS |
CGTTACGAAGTTTCAGTTTC+TGG | 0.161347 | 5.4:-62808424 | None:intergenic |
CCTTGTTCGCTATTTGAATT+TGG | 0.165477 | 5.4:-62808593 | None:intergenic |
TTAACAGTTTCCTTTGATTT+TGG | 0.169714 | 5.4:-62806847 | None:intergenic |
ACTGAATCTTTGTTCTTCTT+TGG | 0.190926 | 5.4:-62808911 | None:intergenic |
GGGGTTCTCTTTCTGTCTTT+TGG | 0.201997 | 5.4:-62808657 | None:intergenic |
AAGAAAGAAGACGCGATATT+TGG | 0.226860 | 5.4:+62808833 | MS.gene50164:CDS |
TCAACTGCCAATACTGCTTC+TGG | 0.228699 | 5.4:+62807215 | MS.gene50164:CDS |
GGTAAAGGGTAGACCATTAA+AGG | 0.229384 | 5.4:+62807250 | MS.gene50164:CDS |
GTTGCTAGAACTGTTATATT+TGG | 0.244405 | 5.4:+62802263 | MS.gene50164:CDS |
AGAGCCTTTAAAACCTTTAA+TGG | 0.253378 | 5.4:-62807263 | None:intergenic |
TTTCATCTGCGGGGCCTGTA+TGG | 0.269359 | 5.4:+62803884 | MS.gene50164:CDS |
GATAAAGACAGCGGATTATC+TGG | 0.273260 | 5.4:+62801829 | MS.gene50164:CDS |
AGGCCAAAGAAAATGAAATA+AGG | 0.273524 | 5.4:+62803854 | MS.gene50164:intron |
CCAAGCAAACACCTGTAATT+TGG | 0.290936 | 5.4:+62807893 | MS.gene50164:CDS |
AAATTCAATGGATCGAAGTT+TGG | 0.296955 | 5.4:+62804190 | MS.gene50164:CDS |
TCCACAATGGGCCGATGTTC+AGG | 0.311484 | 5.4:-62808383 | None:intergenic |
CACTTCGGAATTTGTACTCT+TGG | 0.314322 | 5.4:-62808678 | None:intergenic |
ACTTCGGAATTTGTACTCTT+GGG | 0.316199 | 5.4:-62808677 | None:intergenic |
TTGCCCGCCGAAGACGCTTT+TGG | 0.316252 | 5.4:-62808719 | None:intergenic |
TCTACGCAACATCGTGGTTT+TGG | 0.321066 | 5.4:+62800495 | MS.gene50164:CDS |
TAACCAACCTGCCAAATTAC+AGG | 0.321945 | 5.4:-62807904 | None:intergenic |
CAATCACAACCTTCTTCCTT+TGG | 0.333819 | 5.4:-62801883 | None:intergenic |
TGTCAGAAACCTTCCTTTCA+AGG | 0.342388 | 5.4:+62803749 | MS.gene50164:CDS |
CAAATCATCTTCTGTTTCCT+TGG | 0.348953 | 5.4:-62806935 | None:intergenic |
ATTATTTACAGATTCATCTT+TGG | 0.350195 | 5.4:-62806794 | None:intergenic |
TCTCACCCTCCTCAACATTT+CGG | 0.352471 | 5.4:-62799815 | None:intergenic |
GTCGTCTCATAGCTGTTGAT+TGG | 0.358840 | 5.4:+62804215 | MS.gene50164:CDS |
AATTCAATGGATCGAAGTTT+GGG | 0.367356 | 5.4:+62804191 | MS.gene50164:CDS |
AAAATCAAAGGAAACTGTTA+AGG | 0.370756 | 5.4:+62806849 | MS.gene50164:CDS |
AAGCAGGGGAAAAGGTTTCT+AGG | 0.374787 | 5.4:+62808882 | MS.gene50164:CDS |
CAGGCGATTCGAAAATTCAA+TGG | 0.378318 | 5.4:+62804178 | MS.gene50164:intron |
CTATTAAGCATCCCCTTTCA+AGG | 0.383007 | 5.4:+62802354 | MS.gene50164:CDS |
CACCATGACTCTGGCCATCT+TGG | 0.383423 | 5.4:-62808754 | None:intergenic |
GCTGAAACCCCTTCGGCAGC+TGG | 0.384100 | 5.4:-62807484 | None:intergenic |
AGAAAGTCCAAAAGCGTCTT+CGG | 0.389500 | 5.4:+62808712 | MS.gene50164:CDS |
AGAACCCTTGTGTGAGAACT+TGG | 0.390972 | 5.4:-62808984 | None:intergenic |
CTCTGAAGCAGGAGCATCAT+TGG | 0.391724 | 5.4:-62804269 | None:intergenic |
AAAGGCTCTGGACAAGAAAT+CGG | 0.400061 | 5.4:+62807277 | MS.gene50164:CDS |
CACCGCCAAGCCAGAGAAAT+CGG | 0.405483 | 5.4:+62802320 | MS.gene50164:CDS |
AAATCGTTGCTTCACTTCTT+CGG | 0.405889 | 5.4:-62807001 | None:intergenic |
ATCTAATTCAAAGGGAAGAT+TGG | 0.406524 | 5.4:-62806977 | None:intergenic |
AAGCTTCCATTTCTGAGTCT+TGG | 0.414414 | 5.4:-62803724 | None:intergenic |
AGACCACCGCAATCTTTACT+TGG | 0.416144 | 5.4:+62807340 | MS.gene50164:CDS |
AGCGTAAACTCCTGGATTGT+CGG | 0.421557 | 5.4:-62808510 | None:intergenic |
TTCATCTGCGGGGCCTGTAT+GGG | 0.425013 | 5.4:+62803885 | MS.gene50164:CDS |
TGAGCTGAAGAACGGTTCAT+TGG | 0.431497 | 5.4:+62801557 | MS.gene50164:CDS |
GGCCAAAGAAAATGAAATAA+GGG | 0.433746 | 5.4:+62803855 | MS.gene50164:intron |
TTGGTCACTTGGTGGAGAAC+AGG | 0.437156 | 5.4:-62807054 | None:intergenic |
TCCTGTGTGCAGTCTTTCGA+AGG | 0.439780 | 5.4:+62804030 | MS.gene50164:intron |
ACACACAGTGCCGATTTCTC+TGG | 0.447857 | 5.4:-62802330 | None:intergenic |
TGCCGATTTCTCTGGCTTGG+CGG | 0.449281 | 5.4:-62802322 | None:intergenic |
CAACTGCCAATACTGCTTCT+GGG | 0.451408 | 5.4:+62807216 | MS.gene50164:CDS |
AATCTAAACAGCTTAGGAAA+TGG | 0.456031 | 5.4:+62809032 | MS.gene50164:CDS |
TGAACCGTTCTTCAGCTCAA+TGG | 0.460449 | 5.4:-62801553 | None:intergenic |
CTAGGACATACTTGGTCACT+TGG | 0.461965 | 5.4:-62807065 | None:intergenic |
CAGAAGATCATTCCTTGAAA+GGG | 0.462491 | 5.4:-62802366 | None:intergenic |
GTTCCATGAGCGTAAACTCC+TGG | 0.464858 | 5.4:-62808518 | None:intergenic |
CCAAATTACAGGTGTTTGCT+TGG | 0.465470 | 5.4:-62807893 | None:intergenic |
GCCAATACTGCTTCTGGGAT+GGG | 0.465705 | 5.4:+62807221 | MS.gene50164:CDS |
TTGTCTTGTGAATTCTGCTA+TGG | 0.470061 | 5.4:+62802286 | MS.gene50164:CDS |
CCAAGAACAAGCAGGGGAAA+AGG | 0.470314 | 5.4:+62808874 | MS.gene50164:CDS |
ACCCATCCCAGAAGCAGTAT+TGG | 0.471074 | 5.4:-62807222 | None:intergenic |
TTTGGGCACGCCAACTTGGT+GGG | 0.473129 | 5.4:+62803022 | MS.gene50164:CDS |
ACTGTTTGGGCACGCCAACT+TGG | 0.473827 | 5.4:+62803018 | MS.gene50164:CDS |
CGTTCTTCAGCTCAATGGCT+TGG | 0.475932 | 5.4:-62801548 | None:intergenic |
TAGGAGGGACTTATTCTTGA+CGG | 0.477564 | 5.4:+62807457 | MS.gene50164:intron |
TGCAGGCGTCCACGAGGGAC+TGG | 0.480915 | 5.4:+62807149 | MS.gene50164:intron |
AGAGTTCTTAACAATAATCC+TGG | 0.483615 | 5.4:+62808134 | MS.gene50164:CDS |
GCGTAAACTCCTGGATTGTC+GGG | 0.483887 | 5.4:-62808509 | None:intergenic |
TGCCAATACTGCTTCTGGGA+TGG | 0.486395 | 5.4:+62807220 | MS.gene50164:CDS |
GTTTGGGCACGCCAACTTGG+TGG | 0.487001 | 5.4:+62803021 | MS.gene50164:CDS |
CAGTGCCGATTTCTCTGGCT+TGG | 0.490360 | 5.4:-62802325 | None:intergenic |
AGCATCAATCAACCTTGATC+CGG | 0.491692 | 5.4:-62801648 | None:intergenic |
GATTTCTTTAGGACAACAAA+AGG | 0.498067 | 5.4:+62806588 | MS.gene50164:intron |
CAAGGTGGTAAAGTGCCAAA+TGG | 0.499530 | 5.4:+62808611 | MS.gene50164:CDS |
TCGTCTCATAGCTGTTGATT+GGG | 0.499678 | 5.4:+62804216 | MS.gene50164:CDS |
AAGAACAGCCTTCTTGCAGC+AGG | 0.499780 | 5.4:-62802909 | None:intergenic |
TTCTCACACAAGGGTTCTCA+AGG | 0.501028 | 5.4:+62808989 | MS.gene50164:CDS |
ACGGTTCATTGGTTGGTGAC+CGG | 0.501056 | 5.4:+62801568 | MS.gene50164:CDS |
AGGGAGCCAAGACTCAGAAA+TGG | 0.503890 | 5.4:+62803718 | MS.gene50164:intron |
GAAAGTAGTAGGAAAATCTC+AGG | 0.503966 | 5.4:+62808809 | MS.gene50164:CDS |
GTAATTTAGCACCATGACTC+TGG | 0.504247 | 5.4:-62808763 | None:intergenic |
AGAAATATCTGAAACCTTGT+CGG | 0.504739 | 5.4:-62806899 | None:intergenic |
TACAGATTCATCTTTGGCAG+AGG | 0.505508 | 5.4:-62806788 | None:intergenic |
ATAGTTCCATTGAAAGTAGT+AGG | 0.505722 | 5.4:+62808798 | MS.gene50164:CDS |
GGGAAAAGGTTTCTAGGAAA+AGG | 0.509364 | 5.4:+62808888 | MS.gene50164:CDS |
TGAAAATCGAAGATCAAAAC+CGG | 0.510715 | 5.4:+62801629 | MS.gene50164:CDS |
ATGCAAAACCAAGAACAAGC+AGG | 0.511718 | 5.4:+62808866 | MS.gene50164:CDS |
TCTTCGGTATCTAATTCAAA+GGG | 0.513395 | 5.4:-62806985 | None:intergenic |
CTTCGGAATTTGTACTCTTG+GGG | 0.515980 | 5.4:-62808676 | None:intergenic |
GCAGAAGATCATTCCTTGAA+AGG | 0.517219 | 5.4:-62802367 | None:intergenic |
TCAAGAGCAAACTCCACAAT+GGG | 0.517340 | 5.4:-62808395 | None:intergenic |
TCAACAGATCGAACCTTGAA+AGG | 0.517773 | 5.4:-62803762 | None:intergenic |
GGAATGAATACCTCCCATAC+AGG | 0.518282 | 5.4:-62803898 | None:intergenic |
GCAAACACCTGTAATTTGGC+AGG | 0.519240 | 5.4:+62807897 | MS.gene50164:CDS |
CGAAGATCAAAACCGGATCA+AGG | 0.520422 | 5.4:+62801636 | MS.gene50164:CDS |
ACTGACAAAGAATCTGATCA+AGG | 0.522199 | 5.4:+62806658 | MS.gene50164:CDS |
ATCAGTGGCTGAAACCCCTT+CGG | 0.522666 | 5.4:-62807491 | None:intergenic |
TTCTTCGGTATCTAATTCAA+AGG | 0.523243 | 5.4:-62806986 | None:intergenic |
GACGGAACTCCAGCTGCCGA+AGG | 0.523716 | 5.4:+62807475 | MS.gene50164:CDS |
CAATGATGCTCCTGCTTCAG+AGG | 0.523848 | 5.4:+62804270 | MS.gene50164:CDS |
AAAGAACAAGCCAAAATCAA+AGG | 0.524190 | 5.4:+62806837 | MS.gene50164:CDS |
AATGATAAACCCGACAATCC+AGG | 0.524329 | 5.4:+62808500 | MS.gene50164:CDS |
CAGATCGAACCTTGAAAGGA+AGG | 0.524767 | 5.4:-62803758 | None:intergenic |
GAAATATTTATAGTTTGGAA+AGG | 0.525585 | 5.4:+62807737 | MS.gene50164:intron |
TTGTAATGACGCAGCAGATG+AGG | 0.526196 | 5.4:+62802055 | MS.gene50164:CDS |
GAACAAAGATTCAGTAGGGA+AGG | 0.527716 | 5.4:+62808919 | MS.gene50164:CDS |
AGTCCAAAAGCGTCTTCGGC+GGG | 0.531268 | 5.4:+62808716 | MS.gene50164:CDS |
AAATCAAAGGAAACTGTTAA+GGG | 0.532208 | 5.4:+62806850 | MS.gene50164:CDS |
CCAAAAGAACCAAAGGAAGA+AGG | 0.533227 | 5.4:+62801874 | MS.gene50164:CDS |
AAGACGCGATATTTGGAAAG+AGG | 0.533754 | 5.4:+62808840 | MS.gene50164:CDS |
AAGAAGAACAAAGATTCAGT+AGG | 0.534680 | 5.4:+62808914 | MS.gene50164:CDS |
AAATTACCTTCCTCTGAAGC+AGG | 0.535871 | 5.4:-62804280 | None:intergenic |
TGCATTATCAGCTGCTTCCG+CGG | 0.535875 | 5.4:-62807189 | None:intergenic |
TGTAATGACGCAGCAGATGA+GGG | 0.537350 | 5.4:+62802056 | MS.gene50164:CDS |
TTCCCAGGCCTGCTGCAAGA+AGG | 0.537740 | 5.4:+62802901 | MS.gene50164:intron |
TTCTTTCGATGATATCACTT+CGG | 0.542100 | 5.4:-62808693 | None:intergenic |
TTCTAAGCCTGAAACTTCCA+AGG | 0.542108 | 5.4:+62806918 | MS.gene50164:CDS |
AAGGGTTCTCAAGGAAATGA+TGG | 0.544012 | 5.4:+62808998 | MS.gene50164:CDS |
CCTGTGTGCAGTCTTTCGAA+GGG | 0.545229 | 5.4:+62804031 | MS.gene50164:intron |
GACACAATAGAGGGCAATGA+AGG | 0.546836 | 5.4:+62801781 | MS.gene50164:intron |
GATGCTCCTGCTTCAGAGGA+AGG | 0.546927 | 5.4:+62804274 | MS.gene50164:CDS |
GGACATACTTGGTCACTTGG+TGG | 0.548184 | 5.4:-62807062 | None:intergenic |
TGCAAAACCAAGAACAAGCA+GGG | 0.550150 | 5.4:+62808867 | MS.gene50164:CDS |
ACGGAACTCCAGCTGCCGAA+GGG | 0.553197 | 5.4:+62807476 | MS.gene50164:CDS |
TCATTGACCACAGAAACCTT+CGG | 0.555563 | 5.4:+62808359 | MS.gene50164:intron |
TTGGGCACGCCAACTTGGTG+GGG | 0.556141 | 5.4:+62803023 | MS.gene50164:CDS |
ACTTTACCTCCCCACCAAGT+TGG | 0.556299 | 5.4:-62803032 | None:intergenic |
GGCACGCCAACTTGGTGGGG+AGG | 0.559247 | 5.4:+62803026 | MS.gene50164:CDS |
TTCAGTTCCAAAAGAACCAA+AGG | 0.560178 | 5.4:+62801867 | MS.gene50164:CDS |
AAAGCTACAGTATCAGCAGC+TGG | 0.561838 | 5.4:+62808448 | MS.gene50164:CDS |
ATTCAAGAAAAGCGACTCCA+CGG | 0.563574 | 5.4:-62808079 | None:intergenic |
CTGAAGAACGGTTCATTGGT+TGG | 0.563589 | 5.4:+62801561 | MS.gene50164:CDS |
CAAGAAATCGGCTCATGACA+AGG | 0.564214 | 5.4:+62807289 | MS.gene50164:CDS |
AGAAGAACAAAGATTCAGTA+GGG | 0.570029 | 5.4:+62808915 | MS.gene50164:CDS |
CCCTCCTCAACATTTCGGAA+TGG | 0.570087 | 5.4:-62799810 | None:intergenic |
GAAAGATGGCAGGAAAGGAA+AGG | 0.571880 | 5.4:+62808034 | MS.gene50164:CDS |
ATCTGCGGGGCCTGTATGGG+AGG | 0.572499 | 5.4:+62803888 | MS.gene50164:CDS |
TCCTGAACATCGGCCCATTG+TGG | 0.574904 | 5.4:+62808382 | MS.gene50164:CDS |
GGGCCGATGTTCAGGACCGA+AGG | 0.576328 | 5.4:-62808375 | None:intergenic |
CATGGTGCTAAATTACATGA+AGG | 0.582212 | 5.4:+62808770 | MS.gene50164:CDS |
ATCTCCATTCCGAAATGTTG+AGG | 0.582302 | 5.4:+62799806 | MS.gene50164:CDS |
CCAAATTCAAATAGCGAACA+AGG | 0.584745 | 5.4:+62808593 | MS.gene50164:CDS |
CTGACAAAGAATCTGATCAA+GGG | 0.585118 | 5.4:+62806659 | MS.gene50164:CDS |
TAAGAACTCTCAACGCAACA+AGG | 0.587382 | 5.4:-62808121 | None:intergenic |
AATCCAGGAGTTTACGCTCA+TGG | 0.588207 | 5.4:+62808515 | MS.gene50164:CDS |
CCGCAATCTTTACTTGGCGA+AGG | 0.588434 | 5.4:+62807346 | MS.gene50164:CDS |
CGGAACTCCAGCTGCCGAAG+GGG | 0.589924 | 5.4:+62807477 | MS.gene50164:CDS |
TGACAAACCAGCAAAAGACT+TGG | 0.595099 | 5.4:+62808568 | MS.gene50164:CDS |
TTCAAGAAAAGCGACTCCAC+GGG | 0.595349 | 5.4:-62808078 | None:intergenic |
AACCAAGATGGCCAGAGTCA+TGG | 0.597159 | 5.4:+62808752 | MS.gene50164:CDS |
TCCATTCCGAAATGTTGAGG+AGG | 0.600287 | 5.4:+62799809 | MS.gene50164:CDS |
AGGAATGATCTTCTGCAGCA+TGG | 0.605435 | 5.4:+62802374 | MS.gene50164:CDS |
TACCCTGTGTCGGACTTCTG+TGG | 0.606080 | 5.4:-62803919 | None:intergenic |
TAATGACGCAGCAGATGAGG+GGG | 0.606529 | 5.4:+62802058 | MS.gene50164:CDS |
TCGGAAAATTCATAGTGTGG+AGG | 0.607862 | 5.4:+62799776 | MS.gene50164:CDS |
ATTCCACAGAAGTCCGACAC+AGG | 0.608649 | 5.4:+62803916 | MS.gene50164:CDS |
ATCAAGAGCAAACTCCACAA+TGG | 0.611104 | 5.4:-62808396 | None:intergenic |
AAGTCCAAAAGCGTCTTCGG+CGG | 0.614715 | 5.4:+62808715 | MS.gene50164:CDS |
TTTCTGTTGTTGCCGTTGTG+AGG | 0.616515 | 5.4:-62808473 | None:intergenic |
AAGGAATATATACCCTGTGT+CGG | 0.616888 | 5.4:-62803929 | None:intergenic |
TGACAAAGAATCTGATCAAG+GGG | 0.619765 | 5.4:+62806660 | MS.gene50164:CDS |
TAGATCCAAGTTCTCACACA+AGG | 0.623451 | 5.4:+62808979 | MS.gene50164:CDS |
GTAATGACGCAGCAGATGAG+GGG | 0.624059 | 5.4:+62802057 | MS.gene50164:CDS |
CAAGCCATTGAGCTGAAGAA+CGG | 0.627871 | 5.4:+62801549 | MS.gene50164:CDS |
CCAAATGGAAAATCTCCTCA+AGG | 0.629918 | 5.4:+62808626 | MS.gene50164:CDS |
CCATTCCGAAATGTTGAGGA+GGG | 0.631698 | 5.4:+62799810 | MS.gene50164:CDS |
AAGCTGAAAAGTAACCAAGA+TGG | 0.637677 | 5.4:+62808740 | MS.gene50164:CDS |
AGAAGATCATTCCTTGAAAG+GGG | 0.638195 | 5.4:-62802365 | None:intergenic |
AAACCTTCGGTCCTGAACAT+CGG | 0.642171 | 5.4:+62808372 | MS.gene50164:CDS |
CAAGAACAGCAGTATTCCCG+TGG | 0.650331 | 5.4:+62808062 | MS.gene50164:CDS |
AGATAGTAGTACTACTACTG+AGG | 0.650531 | 5.4:+62806621 | MS.gene50164:CDS |
GCAAAACCAAGAACAAGCAG+GGG | 0.651326 | 5.4:+62808868 | MS.gene50164:CDS |
TAGTGATATTGATAGTGTTG+TGG | 0.658825 | 5.4:+62806687 | MS.gene50164:CDS |
CTCAATGCAGGCGTCCACGA+GGG | 0.661595 | 5.4:+62807144 | MS.gene50164:intron |
TGATATTGATAGTGTTGTGG+AGG | 0.663472 | 5.4:+62806690 | MS.gene50164:CDS |
TTCCACAGAAGTCCGACACA+GGG | 0.667711 | 5.4:+62803917 | MS.gene50164:CDS |
TTAAGAAAACCAGTCCCTCG+TGG | 0.669577 | 5.4:-62807158 | None:intergenic |
TCAGGGTCTACGCAACATCG+TGG | 0.673144 | 5.4:+62800489 | MS.gene50164:intron |
AACATCTAAAGAGTCCGACA+AGG | 0.679032 | 5.4:+62806885 | MS.gene50164:CDS |
ACTCAATGCAGGCGTCCACG+AGG | 0.680693 | 5.4:+62807143 | MS.gene50164:intron |
AAGAACTCTCAACGCAACAA+GGG | 0.697627 | 5.4:-62808120 | None:intergenic |
AGATCCAAGTTCTCACACAA+GGG | 0.701976 | 5.4:+62808980 | MS.gene50164:CDS |
TCGCCAAGTAAAGATTGCGG+TGG | 0.704028 | 5.4:-62807343 | None:intergenic |
AGATTCAGTAGGGAAGGACA+TGG | 0.712089 | 5.4:+62808925 | MS.gene50164:CDS |
CAGCAGCTGGCTCCTCACAA+CGG | 0.721818 | 5.4:+62808461 | MS.gene50164:CDS |
AATGGAAAATCTCCTCAAGG+AGG | 0.725686 | 5.4:+62808629 | MS.gene50164:CDS |
CCTTCGCCAAGTAAAGATTG+CGG | 0.731180 | 5.4:-62807346 | None:intergenic |
AATGACGCAGCAGATGAGGG+GGG | 0.732596 | 5.4:+62802059 | MS.gene50164:CDS |
AATTCAAATAGCGAACAAGG+TGG | 0.748003 | 5.4:+62808596 | MS.gene50164:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 62799759 | 62809066 | 62799759 | ID=MS.gene50164 |
chr5.4 | mRNA | 62799759 | 62809066 | 62799759 | ID=MS.gene50164.t1;Parent=MS.gene50164 |
chr5.4 | exon | 62799759 | 62799831 | 62799759 | ID=MS.gene50164.t1.exon1;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62799759 | 62799831 | 62799759 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62800493 | 62800529 | 62800493 | ID=MS.gene50164.t1.exon2;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62800493 | 62800529 | 62800493 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62801527 | 62801657 | 62801527 | ID=MS.gene50164.t1.exon3;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62801527 | 62801657 | 62801527 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62801791 | 62801895 | 62801791 | ID=MS.gene50164.t1.exon4;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62801791 | 62801895 | 62801791 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62801991 | 62802099 | 62801991 | ID=MS.gene50164.t1.exon5;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62801991 | 62802099 | 62801991 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62802262 | 62802395 | 62802262 | ID=MS.gene50164.t1.exon6;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62802262 | 62802395 | 62802262 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62802908 | 62803047 | 62802908 | ID=MS.gene50164.t1.exon7;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62802908 | 62803047 | 62802908 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62803720 | 62803770 | 62803720 | ID=MS.gene50164.t1.exon8;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62803720 | 62803770 | 62803720 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62803856 | 62803938 | 62803856 | ID=MS.gene50164.t1.exon9;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62803856 | 62803938 | 62803856 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62804042 | 62804096 | 62804042 | ID=MS.gene50164.t1.exon10;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62804042 | 62804096 | 62804042 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62804181 | 62804295 | 62804181 | ID=MS.gene50164.t1.exon11;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62804181 | 62804295 | 62804181 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62806599 | 62807076 | 62806599 | ID=MS.gene50164.t1.exon12;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62806599 | 62807076 | 62806599 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62807154 | 62807367 | 62807154 | ID=MS.gene50164.t1.exon13;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62807154 | 62807367 | 62807154 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62807460 | 62807530 | 62807460 | ID=MS.gene50164.t1.exon14;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62807460 | 62807530 | 62807460 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62807750 | 62807918 | 62807750 | ID=MS.gene50164.t1.exon15;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62807750 | 62807918 | 62807750 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62808023 | 62808155 | 62808023 | ID=MS.gene50164.t1.exon16;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62808023 | 62808155 | 62808023 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
chr5.4 | exon | 62808372 | 62809066 | 62808372 | ID=MS.gene50164.t1.exon17;Parent=MS.gene50164.t1 |
chr5.4 | CDS | 62808372 | 62809066 | 62808372 | ID=cds.MS.gene50164.t1;Parent=MS.gene50164.t1 |
Gene Sequence |
Protein sequence |