Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073795.t1 | XP_013468257.1 | 99.3 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 1.40E-219 | 771.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073795.t1 | Q9SF40 | 81.0 | 406 | 77 | 0 | 1 | 406 | 1 | 406 | 4.1e-191 | 668.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073795.t1 | A0A072VJR8 | 99.3 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 1.0e-219 | 771.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073795.t1 | MTR_1g066990 | 99.257 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 0.0 | 820 |
| MS.gene073795.t1 | MTR_1g045410 | 93.842 | 406 | 25 | 0 | 1 | 406 | 1 | 406 | 0.0 | 741 |
| MS.gene073795.t1 | MTR_5g025120 | 93.250 | 400 | 27 | 0 | 7 | 406 | 9 | 408 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073795.t1 | AT3G09630 | 82.266 | 406 | 72 | 0 | 1 | 406 | 1 | 406 | 0.0 | 693 |
| MS.gene073795.t1 | AT3G09630 | 82.020 | 406 | 72 | 1 | 1 | 406 | 1 | 405 | 0.0 | 687 |
| MS.gene073795.t1 | AT5G02870 | 81.034 | 406 | 77 | 0 | 1 | 406 | 2 | 407 | 0.0 | 681 |
| MS.gene073795.t1 | AT5G02870 | 80.788 | 406 | 77 | 1 | 1 | 406 | 2 | 406 | 0.0 | 674 |
Find 130 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGTTGGATTCCATTTA+TGG | 0.101086 | 1.3:-46929105 | MS.gene073795:CDS |
| AAGGGTCCTTTGATTGTTTA+TGG | 0.212085 | 1.3:-46929267 | MS.gene073795:CDS |
| CTTGCACCTGGTGGGCATTT+AGG | 0.222485 | 1.3:-46929159 | MS.gene073795:CDS |
| ACCAAACCTCCGCCGAGTCC+TGG | 0.279177 | 1.3:-46929701 | MS.gene073795:CDS |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1.3:-46929438 | MS.gene073795:CDS |
| TCCCGTATCCCTCGTGTTGC+CGG | 0.310391 | 1.3:-46929660 | MS.gene073795:CDS |
| ATTTAGGAAGATTTGTGATT+TGG | 0.337375 | 1.3:-46929143 | MS.gene073795:CDS |
| TCCTTGGCCTTCTCGGCATC+AGG | 0.346532 | 1.3:+46929348 | None:intergenic |
| CTTGTCAAAAGAACCATAAA+TGG | 0.363253 | 1.3:+46929092 | None:intergenic |
| CCCAGGACTCGGCGGAGGTT+TGG | 0.365068 | 1.3:+46929700 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1.3:+46928889 | None:intergenic |
| AGAAAGGTTATGTGCTTCCT+AGG | 0.396081 | 1.3:-46929056 | MS.gene073795:CDS |
| AAGGCTATCCTTGGCCTTCT+CGG | 0.399953 | 1.3:+46929341 | None:intergenic |
| CTACCCGGATCTGGCGCAAA+TGG | 0.402852 | 1.3:-46929569 | MS.gene073795:CDS |
| GAAGAGGAAGACTGTCTCTA+AGG | 0.403102 | 1.3:-46928809 | MS.gene073795:intron |
| ATCAGGGATTGGGAGGGAGG+TGG | 0.411958 | 1.3:+46929824 | None:intergenic |
| ATGAGATTCAGAGTGTTGTT+AGG | 0.418477 | 1.3:-46928990 | MS.gene073795:CDS |
| TGTTTGCTCCTACCCGGATC+TGG | 0.420217 | 1.3:-46929578 | MS.gene073795:CDS |
| GGCACGGTGGGTACCACCTC+CGG | 0.421789 | 1.3:+46929641 | None:intergenic |
| ATGGCTGCACGCATGACATC+AGG | 0.422229 | 1.3:+46929807 | None:intergenic |
| CTCTTCACATCCTTCTTCAC+AGG | 0.423968 | 1.3:+46928967 | None:intergenic |
| CCAAACCTCCGCCGAGTCCT+GGG | 0.426021 | 1.3:-46929700 | MS.gene073795:CDS |
| GGTGCCATTTGCGCCAGATC+CGG | 0.427422 | 1.3:+46929565 | None:intergenic |
| TTTCACTGCTTTCGCTCCTT+CGG | 0.428218 | 1.3:+46929242 | None:intergenic |
| TTGTGAGACACCCAACCATT+TGG | 0.429854 | 1.3:+46927453 | None:intergenic |
| ATCCCTCGTGTTGCCGGAGG+TGG | 0.430060 | 1.3:-46929654 | MS.gene073795:CDS |
| TAAGACTGCTTTCGAGAAGT+TGG | 0.434224 | 1.3:-46929118 | MS.gene073795:CDS |
| GTTGTTGGTGATTCTGCTGA+AGG | 0.435579 | 1.3:-46929423 | MS.gene073795:CDS |
| TGAACGAAGTTGACGATGTC+GGG | 0.443817 | 1.3:+46929780 | None:intergenic |
| AAAAGCATGGTACAATACTA+TGG | 0.446415 | 1.3:-46927512 | MS.gene073795:CDS |
| GAGAGGACGAGCTGCGGCGG+CGG | 0.447733 | 1.3:+46929890 | None:intergenic |
| CGTGCCGGACAAGCTGCTTT+CGG | 0.452166 | 1.3:-46929624 | MS.gene073795:CDS |
| CTCCGGCAACACGAGGGATA+CGG | 0.453243 | 1.3:+46929658 | None:intergenic |
| CTCGGCGGAGGTTTGGTGAC+CGG | 0.453892 | 1.3:+46929707 | None:intergenic |
| GACAACTTCTCCAAATGGTT+GGG | 0.457303 | 1.3:-46927463 | MS.gene073795:CDS |
| GTGCCATTTGCGCCAGATCC+GGG | 0.459150 | 1.3:+46929566 | None:intergenic |
| CACGCATGACATCAGGGATT+GGG | 0.461277 | 1.3:+46929814 | None:intergenic |
| GTCACTGTCCACACCGTTGA+AGG | 0.464341 | 1.3:-46929867 | MS.gene073795:CDS |
| GGCTGACGGCGTATGGTTGG+CGG | 0.467373 | 1.3:+46929736 | None:intergenic |
| TGCGGCTGACGGCGTATGGT+TGG | 0.471375 | 1.3:+46929733 | None:intergenic |
| CTTTGCTTGCTGAAGCTGAA+AGG | 0.471531 | 1.3:-46928861 | MS.gene073795:CDS |
| TCCGGCAACACGAGGGATAC+GGG | 0.473737 | 1.3:+46929659 | None:intergenic |
| CGACAACTTCTCCAAATGGT+TGG | 0.475554 | 1.3:-46927464 | MS.gene073795:CDS |
| GCTGACGGCGTATGGTTGGC+GGG | 0.478202 | 1.3:+46929737 | None:intergenic |
| GCACGCATGACATCAGGGAT+TGG | 0.480128 | 1.3:+46929813 | None:intergenic |
| TTGTTCTCGCTCGTGGTCAC+CGG | 0.483198 | 1.3:-46929473 | MS.gene073795:CDS |
| GAGGGAGGTGGGAGTGTCAG+TGG | 0.486549 | 1.3:+46929836 | None:intergenic |
| AATTCGACAACTTCTCCAAA+TGG | 0.487072 | 1.3:-46927468 | MS.gene073795:CDS |
| GTTACCGAAAGCAGCTTGTC+CGG | 0.489007 | 1.3:+46929620 | None:intergenic |
| TTTGCTTGCTGAAGCTGAAA+GGG | 0.491694 | 1.3:-46928860 | MS.gene073795:CDS |
| CTTGGGATCCGTCCTGGTAA+AGG | 0.491818 | 1.3:-46929321 | MS.gene073795:CDS |
| GCTTTGCGGCTGACGGCGTA+TGG | 0.494149 | 1.3:+46929729 | None:intergenic |
| CCGTAGGTATATCTCTCGTA+AGG | 0.494610 | 1.3:-46929286 | MS.gene073795:CDS |
| AAGATTCAACCTTTCAACAT+TGG | 0.499445 | 1.3:+46929188 | None:intergenic |
| TGTGCTTCCTAGGGCTAAGA+TGG | 0.502217 | 1.3:-46929046 | MS.gene073795:CDS |
| GGAAGAAGCTACTGCTATCA+AGG | 0.505228 | 1.3:-46927542 | MS.gene073795:CDS |
| TCCGCCGAGTCCTGGGGTAC+CGG | 0.506294 | 1.3:-46929693 | MS.gene073795:CDS |
| TCAGGGATTGGGAGGGAGGT+GGG | 0.510339 | 1.3:+46929825 | None:intergenic |
| GTCGCATGTTTGCTCCTACC+CGG | 0.517664 | 1.3:-46929584 | MS.gene073795:CDS |
| AGTGGCCATGTCACCTTCAA+CGG | 0.518640 | 1.3:+46929854 | None:intergenic |
| AGGAAAAGCTTGATAAGAAG+AGG | 0.518903 | 1.3:-46928825 | MS.gene073795:CDS |
| AGGTTTGGTGACCGGCTTTG+CGG | 0.519498 | 1.3:+46929715 | None:intergenic |
| TAACCTTTCTTCTTCTCCGA+AGG | 0.520661 | 1.3:+46929069 | None:intergenic |
| GACAGCACGTCCGGTACCCC+AGG | 0.521322 | 1.3:+46929683 | None:intergenic |
| GAGAAGGCCAAGGATAGCCT+TGG | 0.521827 | 1.3:-46929339 | MS.gene073795:CDS |
| TACGCCGTCAGCCGCAAAGC+CGG | 0.523016 | 1.3:-46929726 | MS.gene073795:CDS |
| GACATCAGGGATTGGGAGGG+AGG | 0.523295 | 1.3:+46929821 | None:intergenic |
| GATAGCCTTGGGATCCGTCC+TGG | 0.524843 | 1.3:-46929327 | MS.gene073795:CDS |
| CAAAGGATTCTTCTTCAAAG+TGG | 0.526268 | 1.3:+46928942 | None:intergenic |
| AGAAGGCCAAGGATAGCCTT+GGG | 0.528805 | 1.3:-46929338 | MS.gene073795:CDS |
| GTGAACGAAGTTGACGATGT+CGG | 0.531819 | 1.3:+46929779 | None:intergenic |
| GTTGACGATGTCGGGACGGA+TGG | 0.533971 | 1.3:+46929788 | None:intergenic |
| ACGGATCCCAAGGCTATCCT+TGG | 0.535964 | 1.3:+46929332 | None:intergenic |
| CCTTCACTTGTTCTCGCTCG+TGG | 0.537661 | 1.3:-46929480 | MS.gene073795:CDS |
| TGGTGAATTCTGATTTGACT+AGG | 0.539110 | 1.3:-46929026 | MS.gene073795:CDS |
| AGCAGCTTGTCCGGCACGGT+GGG | 0.541824 | 1.3:+46929629 | None:intergenic |
| TGTTGTTAGGCCTGTGAAGA+AGG | 0.543579 | 1.3:-46928977 | MS.gene073795:CDS |
| GTGACCGGCTTTGCGGCTGA+CGG | 0.544837 | 1.3:+46929722 | None:intergenic |
| GATACGGGAGACAGCACGTC+CGG | 0.546656 | 1.3:+46929674 | None:intergenic |
| TTGATTGTTTATGGTACCGA+AGG | 0.552842 | 1.3:-46929258 | MS.gene073795:CDS |
| CCCTGATGCCGAGAAGGCCA+AGG | 0.558129 | 1.3:-46929349 | MS.gene073795:CDS |
| CGAAGTTGACGATGTCGGGA+CGG | 0.558888 | 1.3:+46929784 | None:intergenic |
| GAATTCACCATCTTAGCCCT+AGG | 0.564088 | 1.3:+46929039 | None:intergenic |
| ACTCAGGAACAGTTTCGATC+CGG | 0.567598 | 1.3:+46929454 | None:intergenic |
| AAGCCTTCGGAGAAGAAGAA+AGG | 0.567627 | 1.3:-46929072 | MS.gene073795:CDS |
| GCTACTGCTATCAAGGCTGC+AGG | 0.570583 | 1.3:-46927535 | MS.gene073795:CDS |
| CCTTGGCCTTCTCGGCATCA+GGG | 0.570713 | 1.3:+46929349 | None:intergenic |
| ACGTCCGGTACCCCAGGACT+CGG | 0.570995 | 1.3:+46929689 | None:intergenic |
| TGAAGGTGTTGAGAAGACTA+AGG | 0.571093 | 1.3:-46929406 | MS.gene073795:CDS |
| AGAATCTCAATGTTATGTTG+AGG | 0.573663 | 1.3:-46928918 | MS.gene073795:CDS |
| CGTAGGTATATCTCTCGTAA+GGG | 0.577073 | 1.3:-46929285 | MS.gene073795:CDS |
| GCAGAATCACCAACAACAAG+AGG | 0.578714 | 1.3:+46929429 | None:intergenic |
| AGCTTACCCTGATGCCGAGA+AGG | 0.582607 | 1.3:-46929355 | MS.gene073795:CDS |
| GGTACCCCAGGACTCGGCGG+AGG | 0.582954 | 1.3:+46929695 | None:intergenic |
| CTTTACCAGGACGGATCCCA+AGG | 0.583493 | 1.3:+46929322 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1.3:-46928888 | MS.gene073795:CDS |
| GACGAGAGGACGAGCTGCGG+CGG | 0.586898 | 1.3:+46929887 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1.3:-46928884 | MS.gene073795:CDS |
| TCGGTACCATAAACAATCAA+AGG | 0.593031 | 1.3:+46929261 | None:intergenic |
| ATAACATTGAGATTCTTCAA+AGG | 0.595302 | 1.3:+46928925 | None:intergenic |
| TGAAAGGGTTAAGTCCAAGA+AGG | 0.600060 | 1.3:-46928845 | MS.gene073795:CDS |
| GCATGACATCAGGGATTGGG+AGG | 0.602783 | 1.3:+46929817 | None:intergenic |
| AAGGTAAAATGCGTAACCGT+AGG | 0.603588 | 1.3:-46929302 | MS.gene073795:CDS |
| GGAGGTGGTACCCACCGTGC+CGG | 0.603632 | 1.3:-46929639 | MS.gene073795:CDS |
| CATTTGCGCCAGATCCGGGT+AGG | 0.604317 | 1.3:+46929570 | None:intergenic |
| GTACCACCTCCGGCAACACG+AGG | 0.605092 | 1.3:+46929651 | None:intergenic |
| AATCTTCCTAAATGCCCACC+AGG | 0.605991 | 1.3:+46929153 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1.3:+46929438 | None:intergenic |
| CTGTGAAGAAGGATGTGAAG+AGG | 0.612591 | 1.3:-46928966 | MS.gene073795:CDS |
| CCACACCGTTGAAGGTGACA+TGG | 0.613167 | 1.3:-46929859 | MS.gene073795:CDS |
| TGTGAAGAAGGATGTGAAGA+GGG | 0.613222 | 1.3:-46928965 | MS.gene073795:CDS |
| CGAAAGCAGCTTGTCCGGCA+CGG | 0.614513 | 1.3:+46929625 | None:intergenic |
| GAAAGGTTATGTGCTTCCTA+GGG | 0.618532 | 1.3:-46929055 | MS.gene073795:CDS |
| TTGAGATCACCAATGTTGAA+AGG | 0.623070 | 1.3:-46929197 | MS.gene073795:CDS |
| TCAAGGCTGCAGGAAAAGCA+TGG | 0.627406 | 1.3:-46927525 | MS.gene073795:CDS |
| TGGCTGCACGCATGACATCA+GGG | 0.628185 | 1.3:+46929808 | None:intergenic |
| CGTATCCCTCGTGTTGCCGG+AGG | 0.628937 | 1.3:-46929657 | MS.gene073795:CDS |
| CCACGAGCGAGAACAAGTGA+AGG | 0.635968 | 1.3:+46929480 | None:intergenic |
| CAAACCTCCGCCGAGTCCTG+GGG | 0.638408 | 1.3:-46929699 | MS.gene073795:CDS |
| CATGACATCAGGGATTGGGA+GGG | 0.640964 | 1.3:+46929818 | None:intergenic |
| CCATGTCACCTTCAACGGTG+TGG | 0.644494 | 1.3:+46929859 | None:intergenic |
| AAGCAGCTTGTCCGGCACGG+TGG | 0.654435 | 1.3:+46929628 | None:intergenic |
| AGTGACGAGAGGACGAGCTG+CGG | 0.658727 | 1.3:+46929884 | None:intergenic |
| TTCGGTAACATGTGTCGTGG+TGG | 0.660053 | 1.3:-46929606 | MS.gene073795:CDS |
| ACGGTGTGGACAGTGACGAG+AGG | 0.675130 | 1.3:+46929873 | None:intergenic |
| ACATTGGTGATCTCAACACC+AGG | 0.677167 | 1.3:+46929204 | None:intergenic |
| TCCGGTACCCCAGGACTCGG+CGG | 0.686621 | 1.3:+46929692 | None:intergenic |
| GCTTTCGGTAACATGTGTCG+TGG | 0.703272 | 1.3:-46929609 | MS.gene073795:CDS |
| CCTTACGAGAGATATACCTA+CGG | 0.703573 | 1.3:+46929286 | None:intergenic |
| TACCACCTCCGGCAACACGA+GGG | 0.703891 | 1.3:+46929652 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAATGATATTACTAA+TGG | - | chr1.3:46929391-46929410 | MS.gene073795:CDS | 15.0% |
| !!! | TATCATTTTCAAATTCTAAA+GGG | + | chr1.3:46928850-46928869 | None:intergenic | 15.0% |
| !!! | TTATCATTTTCAAATTCTAA+AGG | + | chr1.3:46928851-46928870 | None:intergenic | 15.0% |
| !! | ACATGTATGTTAAATGTAAT+TGG | - | chr1.3:46929504-46929523 | MS.gene073795:CDS | 20.0% |
| !! | ACTAATTAACAACAATGTAA+TGG | + | chr1.3:46928610-46928629 | None:intergenic | 20.0% |
| !! | ATAATATTGTATGTTGGAAT+TGG | + | chr1.3:46929440-46929459 | None:intergenic | 20.0% |
| !! | ATTCCAACATACAATATTAT+AGG | - | chr1.3:46929440-46929459 | MS.gene073795:CDS | 20.0% |
| !! | ATTTGAGTGAAGATTTAATT+TGG | - | chr1.3:46928715-46928734 | MS.gene073795:intron | 20.0% |
| !! | TAACCTATAATATTGTATGT+TGG | + | chr1.3:46929446-46929465 | None:intergenic | 20.0% |
| !!! | TTCTAAAATGAAACTTAGAT+TGG | - | chr1.3:46928774-46928793 | MS.gene073795:intron | 20.0% |
| !!! | TTTGAAATATTGTTGATGTA+GGG | - | chr1.3:46929062-46929081 | MS.gene073795:CDS | 20.0% |
| !!! | TTTTGAAATATTGTTGATGT+AGG | - | chr1.3:46929061-46929080 | MS.gene073795:CDS | 20.0% |
| ! | ACAAAGATATTCAACTAACA+TGG | + | chr1.3:46929740-46929759 | None:intergenic | 25.0% |
| ! | ATAACATTGAGATTCTTCAA+AGG | + | chr1.3:46928422-46928441 | None:intergenic | 25.0% |
| ! | ATGATCCATAAAACAACAAA+AGG | + | chr1.3:46929042-46929061 | None:intergenic | 25.0% |
| ! | ATTTAGGAAGATTTGTGATT+TGG | - | chr1.3:46928201-46928220 | MS.gene073795:intron | 25.0% |
| ! | TTAGATTGGTAAGCAATAAT+AGG | - | chr1.3:46928788-46928807 | MS.gene073795:intron | 25.0% |
| ! | TTGAAATATTGTTGATGTAG+GGG | - | chr1.3:46929063-46929082 | MS.gene073795:CDS | 25.0% |
| !! | CTTTAAAAGAGTTCATCAAA+TGG | + | chr1.3:46929186-46929205 | None:intergenic | 25.0% |
| !! | TTTAGAATATCTATAACGTG+AGG | + | chr1.3:46928761-46928780 | None:intergenic | 25.0% |
| !!! | ATCAAGCTTTTGAAATCAAT+TGG | - | chr1.3:46927966-46927985 | MS.gene073795:intron | 25.0% |
| !!! | ATTCACCTTTTGTTGTTTTA+TGG | - | chr1.3:46929034-46929053 | MS.gene073795:CDS | 25.0% |
| !!! | TCTGATTCACATTGATTTTA+CGG | + | chr1.3:46927803-46927822 | None:intergenic | 25.0% |
| AAGATTCAACCTTTCAACAT+TGG | + | chr1.3:46928159-46928178 | None:intergenic | 30.0% | |
| ACAAGAGTGAATACACAATT+TGG | + | chr1.3:46929127-46929146 | None:intergenic | 30.0% | |
| AGAATCTCAATGTTATGTTG+AGG | - | chr1.3:46928426-46928445 | MS.gene073795:intron | 30.0% | |
| ATCTCTCATTTCCAATATGA+TGG | - | chr1.3:46928941-46928960 | MS.gene073795:CDS | 30.0% | |
| CATGCTTGACATTATTAACT+TGG | - | chr1.3:46928908-46928927 | MS.gene073795:CDS | 30.0% | |
| CTTGTCAAAAGAACCATAAA+TGG | + | chr1.3:46928255-46928274 | None:intergenic | 30.0% | |
| GAGGACTAAAACAAATTCAA+GGG | + | chr1.3:46928742-46928761 | None:intergenic | 30.0% | |
| TAATGTCAATGCCATCATAT+TGG | + | chr1.3:46928955-46928974 | None:intergenic | 30.0% | |
| TGAGGACTAAAACAAATTCA+AGG | + | chr1.3:46928743-46928762 | None:intergenic | 30.0% | |
| ! | AAAAGCATGGTACAATACTA+TGG | - | chr1.3:46929832-46929851 | MS.gene073795:CDS | 30.0% |
| ! | AAGAGTTCATCAAATGGATT+TGG | + | chr1.3:46929180-46929199 | None:intergenic | 30.0% |
| ! | AGAGTTCATCAAATGGATTT+GGG | + | chr1.3:46929179-46929198 | None:intergenic | 30.0% |
| ! | GAAATGTATTTGAAACCAAG+TGG | + | chr1.3:46928979-46928998 | None:intergenic | 30.0% |
| !!! | ATAGAGACTGATTTGCTTTT+TGG | - | chr1.3:46929353-46929372 | MS.gene073795:CDS | 30.0% |
| !!! | TCATTTTTAGTGTTACTTGC+AGG | - | chr1.3:46929213-46929232 | MS.gene073795:CDS | 30.0% |
| !!! | TTTTTGCTGTTTGTCTACTT+TGG | - | chr1.3:46929707-46929726 | MS.gene073795:CDS | 30.0% |
| AACAGCAAAAACATGCATCA+AGG | + | chr1.3:46929698-46929717 | None:intergenic | 35.0% | |
| AAGGGTCCTTTGATTGTTTA+TGG | - | chr1.3:46928077-46928096 | MS.gene073795:intron | 35.0% | |
| AATTCGACAACTTCTCCAAA+TGG | - | chr1.3:46929876-46929895 | MS.gene073795:CDS | 35.0% | |
| ACAGCAAAAACATGCATCAA+GGG | + | chr1.3:46929697-46929716 | None:intergenic | 35.0% | |
| ACTTGCAGGTTTAGATTGAT+TGG | - | chr1.3:46929227-46929246 | MS.gene073795:CDS | 35.0% | |
| AGGAAAAGCTTGATAAGAAG+AGG | - | chr1.3:46928519-46928538 | MS.gene073795:intron | 35.0% | |
| CAAAGGATTCTTCTTCAAAG+TGG | + | chr1.3:46928405-46928424 | None:intergenic | 35.0% | |
| CAACCATGTATGAAGATGAA+TGG | - | chr1.3:46929644-46929663 | MS.gene073795:CDS | 35.0% | |
| CAACCATTCATCTTCATACA+TGG | + | chr1.3:46929650-46929669 | None:intergenic | 35.0% | |
| GAGAAGTTGGATTCCATTTA+TGG | - | chr1.3:46928239-46928258 | MS.gene073795:intron | 35.0% | |
| TCGGTACCATAAACAATCAA+AGG | + | chr1.3:46928086-46928105 | None:intergenic | 35.0% | |
| TTGAGATCACCAATGTTGAA+AGG | - | chr1.3:46928147-46928166 | MS.gene073795:intron | 35.0% | |
| ! | AAAGCTTTTCGCAATATTCC+TGG | - | chr1.3:46928122-46928141 | MS.gene073795:intron | 35.0% |
| ! | CTTATCAAGCTTTTCCTTCT+TGG | + | chr1.3:46928516-46928535 | None:intergenic | 35.0% |
| ! | TGGTGAATTCTGATTTGACT+AGG | - | chr1.3:46928318-46928337 | MS.gene073795:intron | 35.0% |
| ! | TTACGCATTTTACCTTTACC+AGG | + | chr1.3:46928038-46928057 | None:intergenic | 35.0% |
| ! | TTGATTGTTTATGGTACCGA+AGG | - | chr1.3:46928086-46928105 | MS.gene073795:intron | 35.0% |
| !! | ATGAGATTCAGAGTGTTGTT+AGG | - | chr1.3:46928354-46928373 | MS.gene073795:intron | 35.0% |
| AAGGTAAAATGCGTAACCGT+AGG | - | chr1.3:46928042-46928061 | MS.gene073795:intron | 40.0% | |
| AGAAAGGTTATGTGCTTCCT+AGG | - | chr1.3:46928288-46928307 | MS.gene073795:intron | 40.0% | |
| ATAGGCTATGTTGCTCTGTA+AGG | - | chr1.3:46928806-46928825 | MS.gene073795:intron | 40.0% | |
| CCTTACGAGAGATATACCTA+CGG | + | chr1.3:46928061-46928080 | None:intergenic | 40.0% | |
| CGTAGGTATATCTCTCGTAA+GGG | - | chr1.3:46928059-46928078 | MS.gene073795:intron | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | + | chr1.3:46928458-46928477 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | - | chr1.3:46928456-46928475 | MS.gene073795:intron | 40.0% | |
| GAAAGGTTATGTGCTTCCTA+GGG | - | chr1.3:46928289-46928308 | MS.gene073795:intron | 40.0% | |
| GACAACTTCTCCAAATGGTT+GGG | - | chr1.3:46929881-46929900 | MS.gene073795:CDS | 40.0% | |
| GACCTGAAACTTGAAATTGC+AGG | + | chr1.3:46929105-46929124 | None:intergenic | 40.0% | |
| TAACCTTTCTTCTTCTCCGA+AGG | + | chr1.3:46928278-46928297 | None:intergenic | 40.0% | |
| TAAGACTGCTTTCGAGAAGT+TGG | - | chr1.3:46928226-46928245 | MS.gene073795:intron | 40.0% | |
| TGAAAGGGTTAAGTCCAAGA+AGG | - | chr1.3:46928499-46928518 | MS.gene073795:intron | 40.0% | |
| TGTGAAGAAGGATGTGAAGA+GGG | - | chr1.3:46928379-46928398 | MS.gene073795:intron | 40.0% | |
| ! | ATCAAATGGATTTGGGTCAC+TGG | + | chr1.3:46929172-46929191 | None:intergenic | 40.0% |
| ! | GCATTTTACCTTTACCAGGA+CGG | + | chr1.3:46928034-46928053 | None:intergenic | 40.0% |
| ! | TGGTTCTTTTGACAAGCCTT+CGG | - | chr1.3:46928259-46928278 | MS.gene073795:intron | 40.0% |
| ! | TTTGCTTGCTGAAGCTGAAA+GGG | - | chr1.3:46928484-46928503 | MS.gene073795:intron | 40.0% |
| !! | GTCCTGCAATTTCAAGTTTC+AGG | - | chr1.3:46929100-46929119 | MS.gene073795:CDS | 40.0% |
| !! | TGAAGGTGTTGAGAAGACTA+AGG | - | chr1.3:46927938-46927957 | MS.gene073795:intron | 40.0% |
| !! | TGGCATTGACATTATCCACT+TGG | - | chr1.3:46928961-46928980 | MS.gene073795:CDS | 40.0% |
| !!! | AATCTTTTGAAGCTTGCACC+TGG | - | chr1.3:46928173-46928192 | MS.gene073795:intron | 40.0% |
| AAGCCTTCGGAGAAGAAGAA+AGG | - | chr1.3:46928272-46928291 | MS.gene073795:intron | 45.0% | |
| AATCTTCCTAAATGCCCACC+AGG | + | chr1.3:46928194-46928213 | None:intergenic | 45.0% | |
| AATTACCCCTGTTCATTCCC+AGG | - | chr1.3:46929781-46929800 | MS.gene073795:CDS | 45.0% | |
| ACTCAGGAACAGTTTCGATC+CGG | + | chr1.3:46927893-46927912 | None:intergenic | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | + | chr1.3:46927909-46927928 | None:intergenic | 45.0% | |
| CCGTAGGTATATCTCTCGTA+AGG | - | chr1.3:46928058-46928077 | MS.gene073795:intron | 45.0% | |
| CGACAACTTCTCCAAATGGT+TGG | - | chr1.3:46929880-46929899 | MS.gene073795:CDS | 45.0% | |
| CTCTTCACATCCTTCTTCAC+AGG | + | chr1.3:46928380-46928399 | None:intergenic | 45.0% | |
| CTGTGAAGAAGGATGTGAAG+AGG | - | chr1.3:46928378-46928397 | MS.gene073795:intron | 45.0% | |
| CTTCTTCCTGGGAATGAACA+GGG | + | chr1.3:46929790-46929809 | None:intergenic | 45.0% | |
| GAAGAGGAAGACTGTCTCTA+AGG | - | chr1.3:46928535-46928554 | MS.gene073795:intron | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | + | chr1.3:46928308-46928327 | None:intergenic | 45.0% | |
| GATAGCAGTAGCTTCTTCCT+GGG | + | chr1.3:46929801-46929820 | None:intergenic | 45.0% | |
| GCAAAAACATGCATCAAGGG+AGG | + | chr1.3:46929694-46929713 | None:intergenic | 45.0% | |
| GCAGAATCACCAACAACAAG+AGG | + | chr1.3:46927918-46927937 | None:intergenic | 45.0% | |
| GGAAGAAGCTACTGCTATCA+AGG | - | chr1.3:46929802-46929821 | MS.gene073795:CDS | 45.0% | |
| GTGAACGAAGTTGACGATGT+CGG | + | chr1.3:46927568-46927587 | None:intergenic | 45.0% | |
| TGAACGAAGTTGACGATGTC+GGG | + | chr1.3:46927567-46927586 | None:intergenic | 45.0% | |
| TGATAGCAGTAGCTTCTTCC+TGG | + | chr1.3:46929802-46929821 | None:intergenic | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | - | chr1.3:46928460-46928479 | MS.gene073795:intron | 45.0% | |
| TGTTGTTAGGCCTGTGAAGA+AGG | - | chr1.3:46928367-46928386 | MS.gene073795:intron | 45.0% | |
| TTCTTCCTGGGAATGAACAG+GGG | + | chr1.3:46929789-46929808 | None:intergenic | 45.0% | |
| TTGTGAGACACCCAACCATT+TGG | + | chr1.3:46929894-46929913 | None:intergenic | 45.0% | |
| TTTCACTGCTTTCGCTCCTT+CGG | + | chr1.3:46928105-46928124 | None:intergenic | 45.0% | |
| ! | ACATTGGTGATCTCAACACC+AGG | + | chr1.3:46928143-46928162 | None:intergenic | 45.0% |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | - | chr1.3:46927906-46927925 | MS.gene073795:intron | 45.0% |
| ! | CTTTGCTTGCTGAAGCTGAA+AGG | - | chr1.3:46928483-46928502 | MS.gene073795:intron | 45.0% |
| !! | GTTGTTGGTGATTCTGCTGA+AGG | - | chr1.3:46927921-46927940 | MS.gene073795:intron | 45.0% |
| !!! | TTTTGAAGCTTGCACCTGGT+GGG | - | chr1.3:46928177-46928196 | MS.gene073795:intron | 45.0% |
| AGAAGGCCAAGGATAGCCTT+GGG | - | chr1.3:46928006-46928025 | MS.gene073795:intron | 50.0% | |
| AGTGGCCATGTCACCTTCAA+CGG | + | chr1.3:46927493-46927512 | None:intergenic | 50.0% | |
| CACGCATGACATCAGGGATT+GGG | + | chr1.3:46927533-46927552 | None:intergenic | 50.0% | |
| CATGACATCAGGGATTGGGA+GGG | + | chr1.3:46927529-46927548 | None:intergenic | 50.0% | |
| GCTTCTTCCTGGGAATGAAC+AGG | + | chr1.3:46929791-46929810 | None:intergenic | 50.0% | |
| GCTTTCGGTAACATGTGTCG+TGG | - | chr1.3:46927735-46927754 | MS.gene073795:intron | 50.0% | |
| GTTACCGAAAGCAGCTTGTC+CGG | + | chr1.3:46927727-46927746 | None:intergenic | 50.0% | |
| TCAAGGCTGCAGGAAAAGCA+TGG | - | chr1.3:46929819-46929838 | MS.gene073795:CDS | 50.0% | |
| TGTGCTTCCTAGGGCTAAGA+TGG | - | chr1.3:46928298-46928317 | MS.gene073795:intron | 50.0% | |
| TTCGGTAACATGTGTCGTGG+TGG | - | chr1.3:46927738-46927757 | MS.gene073795:intron | 50.0% | |
| ! | AAGGCTATCCTTGGCCTTCT+CGG | + | chr1.3:46928006-46928025 | None:intergenic | 50.0% |
| !! | GCGGGCGTTTTTGGAGATAT+TGG | + | chr1.3:46927592-46927611 | None:intergenic | 50.0% |
| !!! | CTTTTGAAGCTTGCACCTGG+TGG | - | chr1.3:46928176-46928195 | MS.gene073795:intron | 50.0% |
| AAGGGAGGAAGCAGCACACA+TGG | + | chr1.3:46929679-46929698 | None:intergenic | 55.0% | |
| ACGGATCCCAAGGCTATCCT+TGG | + | chr1.3:46928015-46928034 | None:intergenic | 55.0% | |
| AGCTTACCCTGATGCCGAGA+AGG | - | chr1.3:46927989-46928008 | MS.gene073795:intron | 55.0% | |
| ATGGCTGCACGCATGACATC+AGG | + | chr1.3:46927540-46927559 | None:intergenic | 55.0% | |
| CCACACCGTTGAAGGTGACA+TGG | - | chr1.3:46927485-46927504 | MS.gene073795:CDS | 55.0% | |
| CCACGAGCGAGAACAAGTGA+AGG | + | chr1.3:46927867-46927886 | None:intergenic | 55.0% | |
| CCATGTCACCTTCAACGGTG+TGG | + | chr1.3:46927488-46927507 | None:intergenic | 55.0% | |
| CCTTCACTTGTTCTCGCTCG+TGG | - | chr1.3:46927864-46927883 | MS.gene073795:intron | 55.0% | |
| CGAAGTTGACGATGTCGGGA+CGG | + | chr1.3:46927563-46927582 | None:intergenic | 55.0% | |
| CTTGGGATCCGTCCTGGTAA+AGG | - | chr1.3:46928023-46928042 | MS.gene073795:intron | 55.0% | |
| CTTTACCAGGACGGATCCCA+AGG | + | chr1.3:46928025-46928044 | None:intergenic | 55.0% | |
| GAGAAGGCCAAGGATAGCCT+TGG | - | chr1.3:46928005-46928024 | MS.gene073795:intron | 55.0% | |
| GCACGCATGACATCAGGGAT+TGG | + | chr1.3:46927534-46927553 | None:intergenic | 55.0% | |
| GCATGACATCAGGGATTGGG+AGG | + | chr1.3:46927530-46927549 | None:intergenic | 55.0% | |
| GCTACTGCTATCAAGGCTGC+AGG | - | chr1.3:46929809-46929828 | MS.gene073795:CDS | 55.0% | |
| GTCACTGTCCACACCGTTGA+AGG | - | chr1.3:46927477-46927496 | MS.gene073795:CDS | 55.0% | |
| GTCGCATGTTTGCTCCTACC+CGG | - | chr1.3:46927760-46927779 | MS.gene073795:intron | 55.0% | |
| TGGCTGCACGCATGACATCA+GGG | + | chr1.3:46927539-46927558 | None:intergenic | 55.0% | |
| TGTTTGCTCCTACCCGGATC+TGG | - | chr1.3:46927766-46927785 | MS.gene073795:intron | 55.0% | |
| TTGTTCTCGCTCGTGGTCAC+CGG | - | chr1.3:46927871-46927890 | MS.gene073795:intron | 55.0% | |
| ! | CTTGCACCTGGTGGGCATTT+AGG | - | chr1.3:46928185-46928204 | MS.gene073795:intron | 55.0% |
| !! | AGGTTTGGTGACCGGCTTTG+CGG | + | chr1.3:46927632-46927651 | None:intergenic | 55.0% |
| !! | GTATGGTTGGCGGGCGTTTT+TGG | + | chr1.3:46927601-46927620 | None:intergenic | 55.0% |
| ACGGTGTGGACAGTGACGAG+AGG | + | chr1.3:46927474-46927493 | None:intergenic | 60.0% | |
| AGTGACGAGAGGACGAGCTG+CGG | + | chr1.3:46927463-46927482 | None:intergenic | 60.0% | |
| ATCAGGGATTGGGAGGGAGG+TGG | + | chr1.3:46927523-46927542 | None:intergenic | 60.0% | |
| CATTTGCGCCAGATCCGGGT+AGG | + | chr1.3:46927777-46927796 | None:intergenic | 60.0% | |
| CGAAAGCAGCTTGTCCGGCA+CGG | + | chr1.3:46927722-46927741 | None:intergenic | 60.0% | |
| CTACCCGGATCTGGCGCAAA+TGG | - | chr1.3:46927775-46927794 | MS.gene073795:intron | 60.0% | |
| CTCCGGCAACACGAGGGATA+CGG | + | chr1.3:46927689-46927708 | None:intergenic | 60.0% | |
| GACATCAGGGATTGGGAGGG+AGG | + | chr1.3:46927526-46927545 | None:intergenic | 60.0% | |
| GATACGGGAGACAGCACGTC+CGG | + | chr1.3:46927673-46927692 | None:intergenic | 60.0% | |
| GTTGACGATGTCGGGACGGA+TGG | + | chr1.3:46927559-46927578 | None:intergenic | 60.0% | |
| TACCACCTCCGGCAACACGA+GGG | + | chr1.3:46927695-46927714 | None:intergenic | 60.0% | |
| TCAGGGATTGGGAGGGAGGT+GGG | + | chr1.3:46927522-46927541 | None:intergenic | 60.0% | |
| TCCCGTATCCCTCGTGTTGC+CGG | - | chr1.3:46927684-46927703 | MS.gene073795:intron | 60.0% | |
| TCCGGCAACACGAGGGATAC+GGG | + | chr1.3:46927688-46927707 | None:intergenic | 60.0% | |
| ! | CCTTGGCCTTCTCGGCATCA+GGG | + | chr1.3:46927998-46928017 | None:intergenic | 60.0% |
| ! | CGTGCCGGACAAGCTGCTTT+CGG | - | chr1.3:46927720-46927739 | MS.gene073795:intron | 60.0% |
| ! | GATAGCCTTGGGATCCGTCC+TGG | - | chr1.3:46928017-46928036 | MS.gene073795:intron | 60.0% |
| ! | TCCTTGGCCTTCTCGGCATC+AGG | + | chr1.3:46927999-46928018 | None:intergenic | 60.0% |
| !! | GGTGCCATTTGCGCCAGATC+CGG | + | chr1.3:46927782-46927801 | None:intergenic | 60.0% |
| !! | GTGCCATTTGCGCCAGATCC+GGG | + | chr1.3:46927781-46927800 | None:intergenic | 60.0% |
| AAGCAGCTTGTCCGGCACGG+TGG | + | chr1.3:46927719-46927738 | None:intergenic | 65.0% | |
| ACCAAACCTCCGCCGAGTCC+TGG | - | chr1.3:46927643-46927662 | MS.gene073795:intron | 65.0% | |
| ACGTCCGGTACCCCAGGACT+CGG | + | chr1.3:46927658-46927677 | None:intergenic | 65.0% | |
| AGCAGCTTGTCCGGCACGGT+GGG | + | chr1.3:46927718-46927737 | None:intergenic | 65.0% | |
| ATCCCTCGTGTTGCCGGAGG+TGG | - | chr1.3:46927690-46927709 | MS.gene073795:intron | 65.0% | |
| CAAACCTCCGCCGAGTCCTG+GGG | - | chr1.3:46927645-46927664 | MS.gene073795:intron | 65.0% | |
| CCAAACCTCCGCCGAGTCCT+GGG | - | chr1.3:46927644-46927663 | MS.gene073795:intron | 65.0% | |
| CCCTGATGCCGAGAAGGCCA+AGG | - | chr1.3:46927995-46928014 | MS.gene073795:intron | 65.0% | |
| CGTATCCCTCGTGTTGCCGG+AGG | - | chr1.3:46927687-46927706 | MS.gene073795:intron | 65.0% | |
| GCTGACGGCGTATGGTTGGC+GGG | + | chr1.3:46927610-46927629 | None:intergenic | 65.0% | |
| GCTTTGCGGCTGACGGCGTA+TGG | + | chr1.3:46927618-46927637 | None:intergenic | 65.0% | |
| GGCTGACGGCGTATGGTTGG+CGG | + | chr1.3:46927611-46927630 | None:intergenic | 65.0% | |
| GTACCACCTCCGGCAACACG+AGG | + | chr1.3:46927696-46927715 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGCAAAGC+CGG | - | chr1.3:46927618-46927637 | MS.gene073795:intron | 65.0% | |
| TGCGGCTGACGGCGTATGGT+TGG | + | chr1.3:46927614-46927633 | None:intergenic | 65.0% | |
| ! | GTGACCGGCTTTGCGGCTGA+CGG | + | chr1.3:46927625-46927644 | None:intergenic | 65.0% |
| !! | CTCGGCGGAGGTTTGGTGAC+CGG | + | chr1.3:46927640-46927659 | None:intergenic | 65.0% |
| !! | GAGGGAGGTGGGAGTGTCAG+TGG | + | chr1.3:46927511-46927530 | None:intergenic | 65.0% |
| CCCAGGACTCGGCGGAGGTT+TGG | + | chr1.3:46927647-46927666 | None:intergenic | 70.0% | |
| GACAGCACGTCCGGTACCCC+AGG | + | chr1.3:46927664-46927683 | None:intergenic | 70.0% | |
| GACGAGAGGACGAGCTGCGG+CGG | + | chr1.3:46927460-46927479 | None:intergenic | 70.0% | |
| GGAGGTGGTACCCACCGTGC+CGG | - | chr1.3:46927705-46927724 | MS.gene073795:intron | 70.0% | |
| GGCACGGTGGGTACCACCTC+CGG | + | chr1.3:46927706-46927725 | None:intergenic | 70.0% | |
| TCCGCCGAGTCCTGGGGTAC+CGG | - | chr1.3:46927651-46927670 | MS.gene073795:intron | 70.0% | |
| TCCGGTACCCCAGGACTCGG+CGG | + | chr1.3:46927655-46927674 | None:intergenic | 70.0% | |
| GAGAGGACGAGCTGCGGCGG+CGG | + | chr1.3:46927457-46927476 | None:intergenic | 75.0% | |
| GGTACCCCAGGACTCGGCGG+AGG | + | chr1.3:46927652-46927671 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46927450 | 46929916 | 46927450 | ID=MS.gene073795 |
| chr1.3 | mRNA | 46927450 | 46929916 | 46927450 | ID=MS.gene073795.t1;Parent=MS.gene073795 |
| chr1.3 | exon | 46928810 | 46929916 | 46928810 | ID=MS.gene073795.t1.exon1;Parent=MS.gene073795.t1 |
| chr1.3 | CDS | 46928810 | 46929916 | 46928810 | ID=cds.MS.gene073795.t1;Parent=MS.gene073795.t1 |
| chr1.3 | exon | 46927450 | 46927563 | 46927450 | ID=MS.gene073795.t1.exon2;Parent=MS.gene073795.t1 |
| chr1.3 | CDS | 46927450 | 46927563 | 46927450 | ID=cds.MS.gene073795.t1;Parent=MS.gene073795.t1 |
| Gene Sequence |
| Protein sequence |
