Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073911.t1 | RHN78676.1 | 99.5 | 406 | 2 | 0 | 1 | 406 | 46 | 451 | 2.90E-220 | 774.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073911.t1 | Q9SF40 | 82.5 | 406 | 71 | 0 | 1 | 406 | 1 | 406 | 2.9e-192 | 672.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073911.t1 | G7I6N5 | 99.5 | 406 | 2 | 0 | 1 | 406 | 1 | 406 | 2.1e-220 | 774.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057272 | MS.gene073911 | 0.81867 | 1.74E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073911.t1 | MTR_1g045410 | 99.507 | 406 | 2 | 0 | 1 | 406 | 1 | 406 | 0.0 | 823 |
| MS.gene073911.t1 | MTR_5g025120 | 95.500 | 400 | 18 | 0 | 7 | 406 | 9 | 408 | 0.0 | 743 |
| MS.gene073911.t1 | MTR_1g066990 | 94.059 | 404 | 24 | 0 | 3 | 406 | 2 | 405 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073911.t1 | AT3G09630 | 82.512 | 406 | 71 | 0 | 1 | 406 | 1 | 406 | 0.0 | 691 |
| MS.gene073911.t1 | AT3G09630 | 82.266 | 406 | 71 | 1 | 1 | 406 | 1 | 405 | 0.0 | 685 |
| MS.gene073911.t1 | AT5G02870 | 82.266 | 406 | 72 | 0 | 1 | 406 | 2 | 407 | 0.0 | 683 |
| MS.gene073911.t1 | AT5G02870 | 82.020 | 406 | 72 | 1 | 1 | 406 | 2 | 406 | 0.0 | 676 |
Find 128 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGACCGTTGATTGTTTA+TGG | 0.172085 | 1.3:+26983183 | MS.gene073911:CDS |
| CCTGAGTTTCCTCTTGTTGT+AGG | 0.227525 | 1.3:+26983012 | MS.gene073911:CDS |
| GTGCCATTTCCGCCAGATTC+TGG | 0.266714 | 1.3:-26982884 | None:intergenic |
| GAGAAACTTGATTCGATTTA+CGG | 0.289997 | 1.3:+26983345 | MS.gene073911:CDS |
| CGAAAGCGGTGAAAGCATTT+AGG | 0.315122 | 1.3:+26983217 | MS.gene073911:CDS |
| CTTGCACCTGGTGGGCATTT+GGG | 0.316137 | 1.3:+26983291 | MS.gene073911:CDS |
| CGACCAGAATCTGGCGGAAA+TGG | 0.317222 | 1.3:+26982881 | MS.gene073911:CDS |
| TTGTTCTTGCTCGTGGTCAT+AGG | 0.318133 | 1.3:+26982977 | MS.gene073911:CDS |
| CCCATGACTCGGCGGAGGTT+TGG | 0.322077 | 1.3:-26982750 | None:intergenic |
| CGCTTAACATCCTTCTTAAT+CGG | 0.329357 | 1.3:-26983483 | None:intergenic |
| ACTTGCACCTGGTGGGCATT+TGG | 0.330852 | 1.3:+26983290 | MS.gene073911:CDS |
| GGAGGAAGCTTCTGCCATTA+AGG | 0.333983 | 1.3:+26985122 | MS.gene073911:intron |
| AGGTTTGGTGGCCGGCTTTA+CGG | 0.335499 | 1.3:-26982735 | None:intergenic |
| GAAGCGTTACGCCGTTGTTT+CGG | 0.347922 | 1.3:+26982927 | MS.gene073911:CDS |
| ATGGACAAAGTTAACAATAT+CGG | 0.355207 | 1.3:-26982671 | None:intergenic |
| TCCCGTATTCCTCGTGTTGC+CGG | 0.358875 | 1.3:+26982790 | MS.gene073911:CDS |
| TGGTAGGGTGGTTTGTGAAT+CGG | 0.366460 | 1.3:-26982617 | None:intergenic |
| CGTGCTGGTCAAGCTGCTTT+CGG | 0.369434 | 1.3:+26982826 | MS.gene073911:CDS |
| GAAGAGGAAGACTGTTTCTA+AGG | 0.381777 | 1.3:+26983641 | MS.gene073911:CDS |
| ATTCCTCGTGTTGCCGGAGG+TGG | 0.382483 | 1.3:+26982796 | MS.gene073911:CDS |
| ATTTGGGTAGGTTTGTTGTT+TGG | 0.382908 | 1.3:+26983307 | MS.gene073911:CDS |
| AGAAACTTGATTCGATTTAC+GGG | 0.384012 | 1.3:+26983346 | MS.gene073911:CDS |
| TGTTTCGGCTATTGCGGCTT+CGG | 0.387787 | 1.3:+26982942 | MS.gene073911:CDS |
| GACGAGGGGTCTTGCGGCGG+CGG | 0.388200 | 1.3:-26982563 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1.3:-26983561 | None:intergenic |
| GTTTGTTGTTTGGACTAAAT+CGG | 0.397101 | 1.3:+26983317 | MS.gene073911:CDS |
| GGCTGACGGCGTACGGTTGT+CGG | 0.414221 | 1.3:-26982714 | None:intergenic |
| AGCACGGTGGGTCCCACCTC+CGG | 0.414888 | 1.3:-26982809 | None:intergenic |
| TGTTTGCTCCGACCAGAATC+TGG | 0.425464 | 1.3:+26982872 | MS.gene073911:CDS |
| CCATGTCGGAGTCGAGTGTT+TGG | 0.427372 | 1.3:-26982591 | None:intergenic |
| CTCGGCGGAGGTTTGGTGGC+CGG | 0.427401 | 1.3:-26982743 | None:intergenic |
| ATAACATTAAGATTCTTAAG+AGG | 0.432087 | 1.3:-26983525 | None:intergenic |
| GCTTTCGCTTTCTCAGCATC+AGG | 0.436026 | 1.3:-26983102 | None:intergenic |
| CCAAACCTCCGCCGAGTCAT+GGG | 0.437310 | 1.3:+26982750 | MS.gene073911:CDS |
| GATAACTTCTCCAAGTGGTT+GGG | 0.441258 | 1.3:+26985201 | MS.gene073911:CDS |
| GCATTACATCGGGGATTGGT+AGG | 0.449379 | 1.3:-26982633 | None:intergenic |
| TGCTGAGGCTGAGAGGGTTA+AGG | 0.451803 | 1.3:+26983596 | MS.gene073911:CDS |
| TCCGCCGAGTCATGGGGAAC+CGG | 0.453280 | 1.3:+26982757 | MS.gene073911:CDS |
| GCTGACGGCGTACGGTTGTC+GGG | 0.457389 | 1.3:-26982713 | None:intergenic |
| ATTGAAGCTCGCATTACATC+GGG | 0.459128 | 1.3:-26982643 | None:intergenic |
| ACCAAACCTCCGCCGAGTCA+TGG | 0.466870 | 1.3:+26982749 | MS.gene073911:CDS |
| GAGAAAGCGAAAGCGAGTCT+TGG | 0.467857 | 1.3:+26983111 | MS.gene073911:CDS |
| AGAAAGCGAAAGCGAGTCTT+GGG | 0.468700 | 1.3:+26983112 | MS.gene073911:CDS |
| TTTCACCGCTTTCGCGCCTT+CGG | 0.470737 | 1.3:-26983208 | None:intergenic |
| TGGACAAAGTTAACAATATC+GGG | 0.471093 | 1.3:-26982670 | None:intergenic |
| CTCCGGCAACACGAGGAATA+CGG | 0.471401 | 1.3:-26982792 | None:intergenic |
| TGATAACTTCTCCAAGTGGT+TGG | 0.476421 | 1.3:+26985200 | MS.gene073911:CDS |
| CACCTGGTGGGCATTTGGGT+AGG | 0.482518 | 1.3:+26983295 | MS.gene073911:CDS |
| CCTTCGCTTGTTCTTGCTCG+TGG | 0.487815 | 1.3:+26982970 | MS.gene073911:CDS |
| GCTTCTGCCATTAAGGCAGC+TGG | 0.495195 | 1.3:+26985129 | MS.gene073911:CDS |
| CGCCGTTGTTTCGGCTATTG+CGG | 0.495630 | 1.3:+26982936 | MS.gene073911:CDS |
| GCTTTACGGCTGACGGCGTA+CGG | 0.496325 | 1.3:-26982721 | None:intergenic |
| TGAGAGGGTTAAGGCTAAGA+AGG | 0.498124 | 1.3:+26983605 | MS.gene073911:CDS |
| TACATCGGGGATTGGTAGGG+TGG | 0.502773 | 1.3:-26982629 | None:intergenic |
| CTTTGCTTGCTGAGGCTGAG+AGG | 0.509740 | 1.3:+26983589 | MS.gene073911:CDS |
| ATGACTCGGCGGAGGTTTGG+TGG | 0.511760 | 1.3:-26982747 | None:intergenic |
| AAAAGCTTGGTACAACACTA+TGG | 0.513409 | 1.3:+26985152 | MS.gene073911:CDS |
| CATTACATCGGGGATTGGTA+GGG | 0.514894 | 1.3:-26982632 | None:intergenic |
| GCTCGCATTACATCGGGGAT+TGG | 0.515117 | 1.3:-26982637 | None:intergenic |
| TTTGCTTGCTGAGGCTGAGA+GGG | 0.515410 | 1.3:+26983590 | MS.gene073911:CDS |
| GGAGGTGGGACCCACCGTGC+TGG | 0.518181 | 1.3:+26982811 | MS.gene073911:CDS |
| TCCGGCAACACGAGGAATAC+GGG | 0.522342 | 1.3:-26982791 | None:intergenic |
| GAGGATGGCTTTGCTTGCTG+AGG | 0.523283 | 1.3:+26983581 | MS.gene073911:CDS |
| GACGGTGACGAGGGGTCTTG+CGG | 0.525418 | 1.3:-26982569 | None:intergenic |
| GATTGAAGCTCGCATTACAT+CGG | 0.530724 | 1.3:-26982644 | None:intergenic |
| AGCGAGTCTTGGGATTCGAC+CGG | 0.531495 | 1.3:+26983122 | MS.gene073911:CDS |
| AACCTACCCAAATGCCCACC+AGG | 0.531845 | 1.3:-26983297 | None:intergenic |
| CGAGTGTTTGGACGGTGACG+AGG | 0.534152 | 1.3:-26982579 | None:intergenic |
| TGTTGTGAGGCCGATTAAGA+AGG | 0.535007 | 1.3:+26983473 | MS.gene073911:CDS |
| TACGCCGTCAGCCGTAAAGC+CGG | 0.535611 | 1.3:+26982724 | MS.gene073911:CDS |
| CGTAGGTATATATCGCGAAA+GGG | 0.536654 | 1.3:+26983165 | MS.gene073911:CDS |
| AGGAGAAGCTTGATAAGAAG+AGG | 0.538354 | 1.3:+26983625 | MS.gene073911:CDS |
| GGTTCCCCATGACTCGGCGG+AGG | 0.541545 | 1.3:-26982755 | None:intergenic |
| GCGAGTCTTGGGATTCGACC+GGG | 0.544565 | 1.3:+26983123 | MS.gene073911:CDS |
| CGAAGGAGTAGAGAAAACTA+AGG | 0.548306 | 1.3:+26983044 | MS.gene073911:CDS |
| AATACGGGAGACGGCACGGC+CGG | 0.548453 | 1.3:-26982776 | None:intergenic |
| TGGTTAATTCTGATTTGACT+AGG | 0.548923 | 1.3:+26983424 | MS.gene073911:CDS |
| TTAAGGCAGCTGGAAAAGCT+TGG | 0.555525 | 1.3:+26985139 | MS.gene073911:CDS |
| TTCCTCGTGTTGCCGGAGGT+GGG | 0.556101 | 1.3:+26982797 | MS.gene073911:CDS |
| CTTGGGATTCGACCGGGGAA+AGG | 0.556923 | 1.3:+26983129 | MS.gene073911:CDS |
| AGCAGCTTGACCAGCACGGT+GGG | 0.557276 | 1.3:-26982821 | None:intergenic |
| CTGTGAAACACCCAACCACT+TGG | 0.559270 | 1.3:-26985211 | None:intergenic |
| GAATCTGGCGGAAATGGCAC+CGG | 0.559782 | 1.3:+26982887 | MS.gene073911:CDS |
| TTGTGAATCGGTGGCCATGT+CGG | 0.562473 | 1.3:-26982605 | None:intergenic |
| GTTGTAGGTGATTCAGCCGA+AGG | 0.566241 | 1.3:+26983027 | MS.gene073911:CDS |
| GAGGAATACGGGAGACGGCA+CGG | 0.567883 | 1.3:-26982780 | None:intergenic |
| GAATTAACCATCTTAGCCCT+AGG | 0.569796 | 1.3:-26983411 | None:intergenic |
| TTGATTGTTTATGGTACCGA+AGG | 0.570169 | 1.3:+26983192 | MS.gene073911:CDS |
| GTGGCCGGCTTTACGGCTGA+CGG | 0.574691 | 1.3:-26982728 | None:intergenic |
| TCGTAGGTATATATCGCGAA+AGG | 0.575293 | 1.3:+26983164 | MS.gene073911:CDS |
| AACACGAGGAATACGGGAGA+CGG | 0.578729 | 1.3:-26982785 | None:intergenic |
| AAGGTAAGATGCGTAATCGT+AGG | 0.583546 | 1.3:+26983148 | MS.gene073911:CDS |
| TTACGCATCTTACCTTTCCC+CGG | 0.584022 | 1.3:-26983141 | None:intergenic |
| GTCGGAGTCGAGTGTTTGGA+CGG | 0.584029 | 1.3:-26982587 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1.3:+26983562 | MS.gene073911:CDS |
| TTGGTACAACACTATGGTCT+CGG | 0.586235 | 1.3:+26985158 | MS.gene073911:CDS |
| GGTGACGAGGGGTCTTGCGG+CGG | 0.587727 | 1.3:-26982566 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1.3:+26983566 | MS.gene073911:CDS |
| CCTACAACAAGAGGAAACTC+AGG | 0.591849 | 1.3:-26983012 | None:intergenic |
| CATTTCCGCCAGATTCTGGT+CGG | 0.592465 | 1.3:-26982880 | None:intergenic |
| GAGTGTTTGGACGGTGACGA+GGG | 0.598147 | 1.3:-26982578 | None:intergenic |
| GTCCCACCTCCGGCAACACG+AGG | 0.600871 | 1.3:-26982799 | None:intergenic |
| ACGGCCGGTTCCCCATGACT+CGG | 0.605318 | 1.3:-26982761 | None:intergenic |
| GCTGAATCACCTACAACAAG+AGG | 0.608782 | 1.3:-26983021 | None:intergenic |
| TCGGTACCATAAACAATCAA+CGG | 0.638403 | 1.3:-26983189 | None:intergenic |
| AGCCGCAATAGCCGAAACAA+CGG | 0.638741 | 1.3:-26982938 | None:intergenic |
| CGTATTCCTCGTGTTGCCGG+AGG | 0.639778 | 1.3:+26982793 | MS.gene073911:CDS |
| CCAAACACTCGACTCCGACA+TGG | 0.639783 | 1.3:+26982591 | MS.gene073911:CDS |
| TGGTACCGAAGGCGCGAAAG+CGG | 0.639834 | 1.3:+26983203 | MS.gene073911:CDS |
| TTCGGTAACATGTGCCGTGG+TGG | 0.641371 | 1.3:+26982844 | MS.gene073911:CDS |
| TAGGGTGGTTTGTGAATCGG+TGG | 0.642809 | 1.3:-26982614 | None:intergenic |
| CAAACCTCCGCCGAGTCATG+GGG | 0.643143 | 1.3:+26982751 | MS.gene073911:CDS |
| CAAAGTTAACAATATCGGGA+CGG | 0.646080 | 1.3:-26982666 | None:intergenic |
| AATTTGATAACTTCTCCAAG+TGG | 0.646820 | 1.3:+26985196 | MS.gene073911:CDS |
| TAGGATTATTAACAGTGATG+AGG | 0.647484 | 1.3:+26983443 | MS.gene073911:CDS |
| CGAAAGCAGCTTGACCAGCA+CGG | 0.654853 | 1.3:-26982825 | None:intergenic |
| AGTGTTTGGACGGTGACGAG+GGG | 0.664474 | 1.3:-26982577 | None:intergenic |
| AAAGCATTTAGGAATATACC+TGG | 0.667521 | 1.3:+26983228 | MS.gene073911:CDS |
| CCACGAGCAAGAACAAGCGA+AGG | 0.669367 | 1.3:-26982970 | None:intergenic |
| TTGAAGCTCGCATTACATCG+GGG | 0.675972 | 1.3:-26982642 | None:intergenic |
| ACATTAGTAATCTCAACACC+AGG | 0.679853 | 1.3:-26983246 | None:intergenic |
| GCCGGTTCCCCATGACTCGG+CGG | 0.681682 | 1.3:-26982758 | None:intergenic |
| CGAGTCTTGGGATTCGACCG+GGG | 0.689790 | 1.3:+26983124 | MS.gene073911:CDS |
| AAGCAGCTTGACCAGCACGG+TGG | 0.692670 | 1.3:-26982822 | None:intergenic |
| TTGCTCCGACCAGAATCTGG+CGG | 0.699404 | 1.3:+26982875 | MS.gene073911:CDS |
| ATGAGGTGCAGAGTGTTGTG+AGG | 0.702312 | 1.3:+26983460 | MS.gene073911:CDS |
| GCTTTCGGTAACATGTGCCG+TGG | 0.703272 | 1.3:+26982841 | MS.gene073911:CDS |
| GAGCAAACATACGACCACCA+CGG | 0.745806 | 1.3:-26982858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTATGTTTTATTATT+AGG | + | chr1.3:26985044-26985063 | MS.gene073911:intron | 10.0% |
| !! | AATGATAGAAATTAAAAACC+AGG | - | chr1.3:26984252-26984271 | None:intergenic | 20.0% |
| !! | ATAACATTAAGATTCTTAAG+AGG | - | chr1.3:26983528-26983547 | None:intergenic | 20.0% |
| !! | TAGTAAGTTAGATAGAAATA+TGG | + | chr1.3:26984631-26984650 | MS.gene073911:intron | 20.0% |
| ! | ACATAAAACAATTACAATGC+AGG | - | chr1.3:26985035-26985054 | None:intergenic | 25.0% |
| ! | ATACCAAACAGAAATGTAAA+TGG | - | chr1.3:26984751-26984770 | None:intergenic | 25.0% |
| ! | ATGGACAAAGTTAACAATAT+CGG | - | chr1.3:26982674-26982693 | None:intergenic | 25.0% |
| ! | ATTCAAATCAAAGTGCAATA+AGG | - | chr1.3:26983807-26983826 | None:intergenic | 25.0% |
| ! | ATTTGTCTCAATATTGTTCA+TGG | + | chr1.3:26985068-26985087 | MS.gene073911:intron | 25.0% |
| ! | TTCTTCAAATGATGCAATTA+AGG | + | chr1.3:26984525-26984544 | MS.gene073911:intron | 25.0% |
| ! | TTTCCATTTACATTTCTGTT+TGG | + | chr1.3:26984745-26984764 | MS.gene073911:intron | 25.0% |
| !! | ATCTCTAGATCTTTTGTAAA+TGG | - | chr1.3:26984611-26984630 | None:intergenic | 25.0% |
| !! | TATGTCTTTATGACAACTTT+TGG | + | chr1.3:26984810-26984829 | MS.gene073911:intron | 25.0% |
| !!! | ACATTATTTTCCTTTGTTTC+AGG | + | chr1.3:26985101-26985120 | MS.gene073911:intron | 25.0% |
| !!! | AGTTTTTAGAAATGTTGGAA+TGG | - | chr1.3:26982693-26982712 | None:intergenic | 25.0% |
| !!! | ATTAGTGTTTTGAAGAAGAT+TGG | + | chr1.3:26983072-26983091 | MS.gene073911:CDS | 25.0% |
| !!! | GTTTTGATGTTTCATTTTGT+GGG | + | chr1.3:26983736-26983755 | MS.gene073911:intron | 25.0% |
| !!! | TGTTTTGATGTTTCATTTTG+TGG | + | chr1.3:26983735-26983754 | MS.gene073911:intron | 25.0% |
| CAATAGAGGATAATCAAAAG+TGG | - | chr1.3:26984872-26984891 | None:intergenic | 30.0% | |
| CATTAACTGCAATTCAATAG+AGG | - | chr1.3:26984886-26984905 | None:intergenic | 30.0% | |
| TAGGATTATTAACAGTGATG+AGG | + | chr1.3:26983443-26983462 | MS.gene073911:CDS | 30.0% | |
| TGGACAAAGTTAACAATATC+GGG | - | chr1.3:26982673-26982692 | None:intergenic | 30.0% | |
| TTATAACGTCGTTTGATCAA+TGG | + | chr1.3:26984669-26984688 | MS.gene073911:intron | 30.0% | |
| ! | AAAGCATTTAGGAATATACC+TGG | + | chr1.3:26983228-26983247 | MS.gene073911:CDS | 30.0% |
| ! | AATTTGATAACTTCTCCAAG+TGG | + | chr1.3:26985196-26985215 | MS.gene073911:CDS | 30.0% |
| ! | AGAAACTTGATTCGATTTAC+GGG | + | chr1.3:26983346-26983365 | MS.gene073911:CDS | 30.0% |
| ! | ATTTACGGGACTTTTGATAA+GGG | + | chr1.3:26983360-26983379 | MS.gene073911:CDS | 30.0% |
| ! | GAGAAACTTGATTCGATTTA+CGG | + | chr1.3:26983345-26983364 | MS.gene073911:CDS | 30.0% |
| ! | GCTTTTTGTGTACATCATTT+AGG | - | chr1.3:26984002-26984021 | None:intergenic | 30.0% |
| ! | TGGTTAATTCTGATTTGACT+AGG | + | chr1.3:26983424-26983443 | MS.gene073911:CDS | 30.0% |
| !! | AAAAAGGGTATGTTTTACCT+AGG | + | chr1.3:26983394-26983413 | MS.gene073911:CDS | 30.0% |
| !! | AAAAGGGTATGTTTTACCTA+GGG | + | chr1.3:26983395-26983414 | MS.gene073911:CDS | 30.0% |
| !! | ATAGATGGTGGATATAGAAT+AGG | + | chr1.3:26984332-26984351 | MS.gene073911:intron | 30.0% |
| !! | GTTTGTTGTTTGGACTAAAT+CGG | + | chr1.3:26983317-26983336 | MS.gene073911:CDS | 30.0% |
| !! | TTATTTTCCTTTGTTTCAGG+AGG | + | chr1.3:26985104-26985123 | MS.gene073911:intron | 30.0% |
| !!! | TCTGATTCACATTGATTTTC+CGG | - | chr1.3:26982909-26982928 | None:intergenic | 30.0% |
| AAAAGCTTGGTACAACACTA+TGG | + | chr1.3:26985152-26985171 | MS.gene073911:CDS | 35.0% | |
| AACCAATCCTTATGTGACTA+AGG | - | chr1.3:26984705-26984724 | None:intergenic | 35.0% | |
| AACTGGTTGTGCAATTTCAA+AGG | - | chr1.3:26983870-26983889 | None:intergenic | 35.0% | |
| AAGGGTAGTGAGAAGAAAAA+AGG | + | chr1.3:26983378-26983397 | MS.gene073911:CDS | 35.0% | |
| ACATTAGTAATCTCAACACC+AGG | - | chr1.3:26983249-26983268 | None:intergenic | 35.0% | |
| ACCAATCCTTATGTGACTAA+GGG | - | chr1.3:26984704-26984723 | None:intergenic | 35.0% | |
| AGGGTAGTGAGAAGAAAAAA+GGG | + | chr1.3:26983379-26983398 | MS.gene073911:CDS | 35.0% | |
| AGTTAGTGCTGTCAAATAGA+TGG | + | chr1.3:26984317-26984336 | MS.gene073911:intron | 35.0% | |
| ATTGGCATTGCTATGAAACT+AGG | - | chr1.3:26984485-26984504 | None:intergenic | 35.0% | |
| CAAAGTTAACAATATCGGGA+CGG | - | chr1.3:26982669-26982688 | None:intergenic | 35.0% | |
| CGCTTAACATCCTTCTTAAT+CGG | - | chr1.3:26983486-26983505 | None:intergenic | 35.0% | |
| GATAATCAAAAGTGGAGCAT+CGG | - | chr1.3:26984864-26984883 | None:intergenic | 35.0% | |
| GTGCATAGTGTAATGTTGTT+TGG | + | chr1.3:26984215-26984234 | MS.gene073911:intron | 35.0% | |
| TCGGTACCATAAACAATCAA+CGG | - | chr1.3:26983192-26983211 | None:intergenic | 35.0% | |
| TTACTGCAACGTATCTTAGT+GGG | + | chr1.3:26984402-26984421 | MS.gene073911:intron | 35.0% | |
| TTGGCATTGCTATGAAACTA+GGG | - | chr1.3:26984484-26984503 | None:intergenic | 35.0% | |
| ! | CGAACTGAATTTTACTTTGC+TGG | + | chr1.3:26984169-26984188 | MS.gene073911:intron | 35.0% |
| ! | GATTTACGGGACTTTTGATA+AGG | + | chr1.3:26983359-26983378 | MS.gene073911:CDS | 35.0% |
| ! | TGTTTGGTTTAGATGTAACC+TGG | + | chr1.3:26984231-26984250 | MS.gene073911:intron | 35.0% |
| ! | TTCCAAGTATTGTCAACTAG+CGG | + | chr1.3:26984377-26984396 | MS.gene073911:intron | 35.0% |
| ! | TTGATTGTTTATGGTACCGA+AGG | + | chr1.3:26983192-26983211 | MS.gene073911:CDS | 35.0% |
| ! | TTTGAAATTGCACAACCAGT+TGG | + | chr1.3:26983869-26983888 | MS.gene073911:intron | 35.0% |
| !! | ATTTGGGTAGGTTTGTTGTT+TGG | + | chr1.3:26983307-26983326 | MS.gene073911:CDS | 35.0% |
| !! | CTTAGTTTTCTCTACTCCTT+CGG | - | chr1.3:26983046-26983065 | None:intergenic | 35.0% |
| !! | TCGGGAGTTTTTAGAAATGT+TGG | - | chr1.3:26982698-26982717 | None:intergenic | 35.0% |
| !!! | AATCTTTTGAAACTTGCACC+TGG | + | chr1.3:26983279-26983298 | MS.gene073911:CDS | 35.0% |
| AACCAGTTGGACTCTCTATT+TGG | + | chr1.3:26983882-26983901 | MS.gene073911:intron | 40.0% | |
| AAGGTAAGATGCGTAATCGT+AGG | + | chr1.3:26983148-26983167 | MS.gene073911:CDS | 40.0% | |
| AGGAGAAGCTTGATAAGAAG+AGG | + | chr1.3:26983625-26983644 | MS.gene073911:CDS | 40.0% | |
| ATTGAAGCTCGCATTACATC+GGG | - | chr1.3:26982646-26982665 | None:intergenic | 40.0% | |
| CAATCCTTATGTGACTAAGG+GGG | - | chr1.3:26984702-26984721 | None:intergenic | 40.0% | |
| CAATGCAGGAAATAGAGCAA+AGG | - | chr1.3:26985021-26985040 | None:intergenic | 40.0% | |
| CCAATCCTTATGTGACTAAG+GGG | - | chr1.3:26984703-26984722 | None:intergenic | 40.0% | |
| CGAAGGAGTAGAGAAAACTA+AGG | + | chr1.3:26983044-26983063 | MS.gene073911:CDS | 40.0% | |
| CGTAGGTATATATCGCGAAA+GGG | + | chr1.3:26983165-26983184 | MS.gene073911:CDS | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | - | chr1.3:26983564-26983583 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | + | chr1.3:26983562-26983581 | MS.gene073911:CDS | 40.0% | |
| GAATTAACCATCTTAGCCCT+AGG | - | chr1.3:26983414-26983433 | None:intergenic | 40.0% | |
| GATAACTTCTCCAAGTGGTT+GGG | + | chr1.3:26985201-26985220 | MS.gene073911:CDS | 40.0% | |
| GATTGAAGCTCGCATTACAT+CGG | - | chr1.3:26982647-26982666 | None:intergenic | 40.0% | |
| GTTACTGCAACGTATCTTAG+TGG | + | chr1.3:26984401-26984420 | MS.gene073911:intron | 40.0% | |
| TAGTGCTGTCAAATAGATGG+TGG | + | chr1.3:26984320-26984339 | MS.gene073911:intron | 40.0% | |
| TCGTAGGTATATATCGCGAA+AGG | + | chr1.3:26983164-26983183 | MS.gene073911:CDS | 40.0% | |
| TGATAACTTCTCCAAGTGGT+TGG | + | chr1.3:26985200-26985219 | MS.gene073911:CDS | 40.0% | |
| TTGGTACAACACTATGGTCT+CGG | + | chr1.3:26985158-26985177 | MS.gene073911:CDS | 40.0% | |
| ! | AAGGGACCGTTGATTGTTTA+TGG | + | chr1.3:26983183-26983202 | MS.gene073911:CDS | 40.0% |
| ! | TCCTCTAGTGTAAGGTATCA+CGG | + | chr1.3:26984040-26984059 | MS.gene073911:intron | 40.0% |
| ! | TGTTTTACCTAGGGCTAAGA+TGG | + | chr1.3:26983404-26983423 | MS.gene073911:CDS | 40.0% |
| !! | GAAGAGGAAGACTGTTTCTA+AGG | + | chr1.3:26983641-26983660 | MS.gene073911:CDS | 40.0% |
| !! | GTCACATAAGGATTGGTTGT+TGG | + | chr1.3:26984707-26984726 | MS.gene073911:intron | 40.0% |
| !!! | TTTTGAAACTTGCACCTGGT+GGG | + | chr1.3:26983283-26983302 | MS.gene073911:CDS | 40.0% |
| ACACTAGAGGATGTCTTGCT+TGG | - | chr1.3:26984031-26984050 | None:intergenic | 45.0% | |
| AGAAAGCGAAAGCGAGTCTT+GGG | + | chr1.3:26983112-26983131 | MS.gene073911:CDS | 45.0% | |
| CACAACAGAACGAAGCACAT+TGG | - | chr1.3:26984503-26984522 | None:intergenic | 45.0% | |
| CACCGCTAGTTGACAATACT+TGG | - | chr1.3:26984382-26984401 | None:intergenic | 45.0% | |
| CACTATGCACAGCACATTCT+AGG | - | chr1.3:26984205-26984224 | None:intergenic | 45.0% | |
| CCCCTTAGTCACATAAGGAT+TGG | + | chr1.3:26984700-26984719 | MS.gene073911:intron | 45.0% | |
| CCTACAACAAGAGGAAACTC+AGG | - | chr1.3:26983015-26983034 | None:intergenic | 45.0% | |
| CTTATGTGACTAAGGGGGAT+CGG | - | chr1.3:26984697-26984716 | None:intergenic | 45.0% | |
| GAAGCTTCCTCCTGAAACAA+AGG | - | chr1.3:26985114-26985133 | None:intergenic | 45.0% | |
| GACCAAATAGAGAGTCCAAC+TGG | - | chr1.3:26983887-26983906 | None:intergenic | 45.0% | |
| GCAAGACATCCTCTAGTGTA+AGG | + | chr1.3:26984032-26984051 | MS.gene073911:intron | 45.0% | |
| GCTGAATCACCTACAACAAG+AGG | - | chr1.3:26983024-26983043 | None:intergenic | 45.0% | |
| TGAGAGGGTTAAGGCTAAGA+AGG | + | chr1.3:26983605-26983624 | MS.gene073911:CDS | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | + | chr1.3:26983566-26983585 | MS.gene073911:CDS | 45.0% | |
| TGTTGTGAGGCCGATTAAGA+AGG | + | chr1.3:26983473-26983492 | MS.gene073911:CDS | 45.0% | |
| TTAAGGCAGCTGGAAAAGCT+TGG | + | chr1.3:26985139-26985158 | MS.gene073911:CDS | 45.0% | |
| TTACGCATCTTACCTTTCCC+CGG | - | chr1.3:26983144-26983163 | None:intergenic | 45.0% | |
| TTGAAGCTCGCATTACATCG+GGG | - | chr1.3:26982645-26982664 | None:intergenic | 45.0% | |
| TTGTTCTTGCTCGTGGTCAT+AGG | + | chr1.3:26982977-26982996 | MS.gene073911:CDS | 45.0% | |
| ! | AGCTTTTCCAGCTGCCTTAA+TGG | - | chr1.3:26985139-26985158 | None:intergenic | 45.0% |
| ! | CATTACATCGGGGATTGGTA+GGG | - | chr1.3:26982635-26982654 | None:intergenic | 45.0% |
| ! | CCTCTAGTGTAAGGTATCAC+GGG | + | chr1.3:26984041-26984060 | MS.gene073911:intron | 45.0% |
| ! | CCTGAGTTTCCTCTTGTTGT+AGG | + | chr1.3:26983012-26983031 | MS.gene073911:CDS | 45.0% |
| ! | TGGTAGGGTGGTTTGTGAAT+CGG | - | chr1.3:26982620-26982639 | None:intergenic | 45.0% |
| !! | CGAAAGCGGTGAAAGCATTT+AGG | + | chr1.3:26983217-26983236 | MS.gene073911:CDS | 45.0% |
| !! | TGGAGCATCGGTTGCAATTA+AGG | - | chr1.3:26984852-26984871 | None:intergenic | 45.0% |
| !!! | CTTTTGAAACTTGCACCTGG+TGG | + | chr1.3:26983282-26983301 | MS.gene073911:CDS | 45.0% |
| AACACGAGGAATACGGGAGA+CGG | - | chr1.3:26982788-26982807 | None:intergenic | 50.0% | |
| AGCCGCAATAGCCGAAACAA+CGG | - | chr1.3:26982941-26982960 | None:intergenic | 50.0% | |
| CATTTCCGCCAGATTCTGGT+CGG | - | chr1.3:26982883-26982902 | None:intergenic | 50.0% | |
| CCCGTGATACCTTACACTAG+AGG | - | chr1.3:26984044-26984063 | None:intergenic | 50.0% | |
| CGATCCCCCTTAGTCACATA+AGG | + | chr1.3:26984695-26984714 | MS.gene073911:intron | 50.0% | |
| CTGTGAAACACCCAACCACT+TGG | - | chr1.3:26985214-26985233 | None:intergenic | 50.0% | |
| GAGAAAGCGAAAGCGAGTCT+TGG | + | chr1.3:26983111-26983130 | MS.gene073911:CDS | 50.0% | |
| GAGCAAACATACGACCACCA+CGG | - | chr1.3:26982861-26982880 | None:intergenic | 50.0% | |
| GCTTTCGCTTTCTCAGCATC+AGG | - | chr1.3:26983105-26983124 | None:intergenic | 50.0% | |
| GGAGGAAGCTTCTGCCATTA+AGG | + | chr1.3:26985122-26985141 | MS.gene073911:intron | 50.0% | |
| GTTGTAGGTGATTCAGCCGA+AGG | + | chr1.3:26983027-26983046 | MS.gene073911:CDS | 50.0% | |
| TGTTTCGGCTATTGCGGCTT+CGG | + | chr1.3:26982942-26982961 | MS.gene073911:CDS | 50.0% | |
| TGTTTGCTCCGACCAGAATC+TGG | + | chr1.3:26982872-26982891 | MS.gene073911:CDS | 50.0% | |
| TTGTGAATCGGTGGCCATGT+CGG | - | chr1.3:26982608-26982627 | None:intergenic | 50.0% | |
| ! | GAAGCGTTACGCCGTTGTTT+CGG | + | chr1.3:26982927-26982946 | MS.gene073911:CDS | 50.0% |
| ! | GCATTACATCGGGGATTGGT+AGG | - | chr1.3:26982636-26982655 | None:intergenic | 50.0% |
| ! | TAGGGTGGTTTGTGAATCGG+TGG | - | chr1.3:26982617-26982636 | None:intergenic | 50.0% |
| ! | TTTGCTTGCTGAGGCTGAGA+GGG | + | chr1.3:26983590-26983609 | MS.gene073911:CDS | 50.0% |
| !! | ATGAGGTGCAGAGTGTTGTG+AGG | + | chr1.3:26983460-26983479 | MS.gene073911:CDS | 50.0% |
| AACCTACCCAAATGCCCACC+AGG | - | chr1.3:26983300-26983319 | None:intergenic | 55.0% | |
| AGCGAGTCTTGGGATTCGAC+CGG | + | chr1.3:26983122-26983141 | MS.gene073911:CDS | 55.0% | |
| AGTGTTTGGACGGTGACGAG+GGG | - | chr1.3:26982580-26982599 | None:intergenic | 55.0% | |
| CCAAACACTCGACTCCGACA+TGG | + | chr1.3:26982591-26982610 | MS.gene073911:CDS | 55.0% | |
| CCACGAGCAAGAACAAGCGA+AGG | - | chr1.3:26982973-26982992 | None:intergenic | 55.0% | |
| CCATGTCGGAGTCGAGTGTT+TGG | - | chr1.3:26982594-26982613 | None:intergenic | 55.0% | |
| CCTTCGCTTGTTCTTGCTCG+TGG | + | chr1.3:26982970-26982989 | MS.gene073911:CDS | 55.0% | |
| CGAAAGCAGCTTGACCAGCA+CGG | - | chr1.3:26982828-26982847 | None:intergenic | 55.0% | |
| CGACCAGAATCTGGCGGAAA+TGG | + | chr1.3:26982881-26982900 | MS.gene073911:CDS | 55.0% | |
| CTCCGGCAACACGAGGAATA+CGG | - | chr1.3:26982795-26982814 | None:intergenic | 55.0% | |
| GAATCTGGCGGAAATGGCAC+CGG | + | chr1.3:26982887-26982906 | MS.gene073911:CDS | 55.0% | |
| GAGTGTTTGGACGGTGACGA+GGG | - | chr1.3:26982581-26982600 | None:intergenic | 55.0% | |
| GCTCGCATTACATCGGGGAT+TGG | - | chr1.3:26982640-26982659 | None:intergenic | 55.0% | |
| GCTTCTGCCATTAAGGCAGC+TGG | + | chr1.3:26985129-26985148 | MS.gene073911:CDS | 55.0% | |
| GCTTTCGGTAACATGTGCCG+TGG | + | chr1.3:26982841-26982860 | MS.gene073911:CDS | 55.0% | |
| GTCGGAGTCGAGTGTTTGGA+CGG | - | chr1.3:26982590-26982609 | None:intergenic | 55.0% | |
| TCCCGTATTCCTCGTGTTGC+CGG | + | chr1.3:26982790-26982809 | MS.gene073911:CDS | 55.0% | |
| TCCGGCAACACGAGGAATAC+GGG | - | chr1.3:26982794-26982813 | None:intergenic | 55.0% | |
| TGCTGAGGCTGAGAGGGTTA+AGG | + | chr1.3:26983596-26983615 | MS.gene073911:CDS | 55.0% | |
| TTCGGTAACATGTGCCGTGG+TGG | + | chr1.3:26982844-26982863 | MS.gene073911:CDS | 55.0% | |
| TTGCTCCGACCAGAATCTGG+CGG | + | chr1.3:26982875-26982894 | MS.gene073911:CDS | 55.0% | |
| TTTCACCGCTTTCGCGCCTT+CGG | - | chr1.3:26983211-26983230 | None:intergenic | 55.0% | |
| ! | ACTTGCACCTGGTGGGCATT+TGG | + | chr1.3:26983290-26983309 | MS.gene073911:CDS | 55.0% |
| ! | CGCCGTTGTTTCGGCTATTG+CGG | + | chr1.3:26982936-26982955 | MS.gene073911:CDS | 55.0% |
| ! | CGTGCTGGTCAAGCTGCTTT+CGG | + | chr1.3:26982826-26982845 | MS.gene073911:CDS | 55.0% |
| ! | CTTGCACCTGGTGGGCATTT+GGG | + | chr1.3:26983291-26983310 | MS.gene073911:CDS | 55.0% |
| ! | CTTTGCTTGCTGAGGCTGAG+AGG | + | chr1.3:26983589-26983608 | MS.gene073911:CDS | 55.0% |
| ! | GAGGATGGCTTTGCTTGCTG+AGG | + | chr1.3:26983581-26983600 | MS.gene073911:CDS | 55.0% |
| ! | TACATCGGGGATTGGTAGGG+TGG | - | chr1.3:26982632-26982651 | None:intergenic | 55.0% |
| !! | AGGTTTGGTGGCCGGCTTTA+CGG | - | chr1.3:26982738-26982757 | None:intergenic | 55.0% |
| !! | GTGCCATTTCCGCCAGATTC+TGG | - | chr1.3:26982887-26982906 | None:intergenic | 55.0% |
| AAGCAGCTTGACCAGCACGG+TGG | - | chr1.3:26982825-26982844 | None:intergenic | 60.0% | |
| ACCAAACCTCCGCCGAGTCA+TGG | + | chr1.3:26982749-26982768 | MS.gene073911:CDS | 60.0% | |
| AGCAGCTTGACCAGCACGGT+GGG | - | chr1.3:26982824-26982843 | None:intergenic | 60.0% | |
| ATTCCTCGTGTTGCCGGAGG+TGG | + | chr1.3:26982796-26982815 | MS.gene073911:CDS | 60.0% | |
| CAAACCTCCGCCGAGTCATG+GGG | + | chr1.3:26982751-26982770 | MS.gene073911:CDS | 60.0% | |
| CCAAACCTCCGCCGAGTCAT+GGG | + | chr1.3:26982750-26982769 | MS.gene073911:CDS | 60.0% | |
| CGAGTCTTGGGATTCGACCG+GGG | + | chr1.3:26983124-26983143 | MS.gene073911:CDS | 60.0% | |
| CGAGTGTTTGGACGGTGACG+AGG | - | chr1.3:26982582-26982601 | None:intergenic | 60.0% | |
| CGTATTCCTCGTGTTGCCGG+AGG | + | chr1.3:26982793-26982812 | MS.gene073911:CDS | 60.0% | |
| CTTGGGATTCGACCGGGGAA+AGG | + | chr1.3:26983129-26983148 | MS.gene073911:CDS | 60.0% | |
| GAGGAATACGGGAGACGGCA+CGG | - | chr1.3:26982783-26982802 | None:intergenic | 60.0% | |
| GCGAGTCTTGGGATTCGACC+GGG | + | chr1.3:26983123-26983142 | MS.gene073911:CDS | 60.0% | |
| GCTTTACGGCTGACGGCGTA+CGG | - | chr1.3:26982724-26982743 | None:intergenic | 60.0% | |
| TACGCCGTCAGCCGTAAAGC+CGG | + | chr1.3:26982724-26982743 | MS.gene073911:CDS | 60.0% | |
| TTCCTCGTGTTGCCGGAGGT+GGG | + | chr1.3:26982797-26982816 | MS.gene073911:CDS | 60.0% | |
| ! | ATGACTCGGCGGAGGTTTGG+TGG | - | chr1.3:26982750-26982769 | None:intergenic | 60.0% |
| ! | CACCTGGTGGGCATTTGGGT+AGG | + | chr1.3:26983295-26983314 | MS.gene073911:CDS | 60.0% |
| ! | TGGTACCGAAGGCGCGAAAG+CGG | + | chr1.3:26983203-26983222 | MS.gene073911:CDS | 60.0% |
| AATACGGGAGACGGCACGGC+CGG | - | chr1.3:26982779-26982798 | None:intergenic | 65.0% | |
| GACGGTGACGAGGGGTCTTG+CGG | - | chr1.3:26982572-26982591 | None:intergenic | 65.0% | |
| GCTGACGGCGTACGGTTGTC+GGG | - | chr1.3:26982716-26982735 | None:intergenic | 65.0% | |
| GGCTGACGGCGTACGGTTGT+CGG | - | chr1.3:26982717-26982736 | None:intergenic | 65.0% | |
| TCCGCCGAGTCATGGGGAAC+CGG | + | chr1.3:26982757-26982776 | MS.gene073911:CDS | 65.0% | |
| ! | ACGGCCGGTTCCCCATGACT+CGG | - | chr1.3:26982764-26982783 | None:intergenic | 65.0% |
| ! | CCCATGACTCGGCGGAGGTT+TGG | - | chr1.3:26982753-26982772 | None:intergenic | 65.0% |
| ! | GTGGCCGGCTTTACGGCTGA+CGG | - | chr1.3:26982731-26982750 | None:intergenic | 65.0% |
| AGCACGGTGGGTCCCACCTC+CGG | - | chr1.3:26982812-26982831 | None:intergenic | 70.0% | |
| GGTGACGAGGGGTCTTGCGG+CGG | - | chr1.3:26982569-26982588 | None:intergenic | 70.0% | |
| GTCCCACCTCCGGCAACACG+AGG | - | chr1.3:26982802-26982821 | None:intergenic | 70.0% | |
| ! | GCCGGTTCCCCATGACTCGG+CGG | - | chr1.3:26982761-26982780 | None:intergenic | 70.0% |
| ! | GGTTCCCCATGACTCGGCGG+AGG | - | chr1.3:26982758-26982777 | None:intergenic | 70.0% |
| !! | CTCGGCGGAGGTTTGGTGGC+CGG | - | chr1.3:26982746-26982765 | None:intergenic | 70.0% |
| GACGAGGGGTCTTGCGGCGG+CGG | - | chr1.3:26982566-26982585 | None:intergenic | 75.0% | |
| GGAGGTGGGACCCACCGTGC+TGG | + | chr1.3:26982811-26982830 | MS.gene073911:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26982556 | 26985236 | 26982556 | ID=MS.gene073911 |
| chr1.3 | mRNA | 26982556 | 26985236 | 26982556 | ID=MS.gene073911.t1;Parent=MS.gene073911 |
| chr1.3 | exon | 26982556 | 26983662 | 26982556 | ID=MS.gene073911.t1.exon1;Parent=MS.gene073911.t1 |
| chr1.3 | CDS | 26982556 | 26983662 | 26982556 | ID=cds.MS.gene073911.t1;Parent=MS.gene073911.t1 |
| chr1.3 | exon | 26985123 | 26985236 | 26985123 | ID=MS.gene073911.t1.exon2;Parent=MS.gene073911.t1 |
| chr1.3 | CDS | 26985123 | 26985236 | 26985123 | ID=cds.MS.gene073911.t1;Parent=MS.gene073911.t1 |
| Gene Sequence |
| Protein sequence |
