Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30895.t1 | XP_013468257.1 | 98.8 | 404 | 5 | 0 | 3 | 406 | 2 | 405 | 6.00E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30895.t1 | Q9SF40 | 81.0 | 406 | 77 | 0 | 1 | 406 | 1 | 406 | 4.1e-191 | 668.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30895.t1 | A0A072VJR8 | 98.8 | 404 | 5 | 0 | 3 | 406 | 2 | 405 | 4.4e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene30895 | 0.881789 | 1.79E-70 | -1.69E-46 |
| MS.gene049376 | MS.gene30895 | 0.860898 | 1.50E-63 | -1.69E-46 |
| MS.gene051925 | MS.gene30895 | 0.829157 | 6.02E-55 | -1.69E-46 |
| MS.gene051927 | MS.gene30895 | 0.852316 | 5.00E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30895.t1 | MTR_1g066990 | 99.010 | 404 | 4 | 0 | 3 | 406 | 2 | 405 | 0.0 | 818 |
| MS.gene30895.t1 | MTR_1g045410 | 93.596 | 406 | 26 | 0 | 1 | 406 | 1 | 406 | 0.0 | 739 |
| MS.gene30895.t1 | MTR_5g025120 | 93.000 | 400 | 28 | 0 | 7 | 406 | 9 | 408 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30895.t1 | AT3G09630 | 82.266 | 406 | 72 | 0 | 1 | 406 | 1 | 406 | 0.0 | 693 |
| MS.gene30895.t1 | AT3G09630 | 82.020 | 406 | 72 | 1 | 1 | 406 | 1 | 405 | 0.0 | 687 |
| MS.gene30895.t1 | AT5G02870 | 81.034 | 406 | 77 | 0 | 1 | 406 | 2 | 407 | 0.0 | 681 |
| MS.gene30895.t1 | AT5G02870 | 80.788 | 406 | 77 | 1 | 1 | 406 | 2 | 406 | 0.0 | 675 |
Find 131 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGTTGGATTCCATTTA+TGG | 0.101086 | 1.2:-50395112 | MS.gene30895:CDS |
| AAGGGTCCTTTGATTGTTTA+TGG | 0.212085 | 1.2:-50395274 | MS.gene30895:CDS |
| CTTGCACCTGGTGGGCATTT+AGG | 0.219457 | 1.2:-50395166 | MS.gene30895:CDS |
| ACCAAACCTCCGCCGAGTCC+TGG | 0.279177 | 1.2:-50395708 | MS.gene30895:CDS |
| CTACCCGGATCTGGCGTAAA+TGG | 0.282086 | 1.2:-50395576 | MS.gene30895:CDS |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1.2:-50395445 | MS.gene30895:CDS |
| TCCCGTATCCCTCGTGTTGC+CGG | 0.310391 | 1.2:-50395667 | MS.gene30895:CDS |
| TCCTTGGCCTTCTCGGCATC+AGG | 0.346532 | 1.2:+50395355 | None:intergenic |
| ATTTAGGTAGATTTGTGATT+TGG | 0.346926 | 1.2:-50395150 | MS.gene30895:CDS |
| CTTGTCAAAAGAACCATAAA+TGG | 0.363253 | 1.2:+50395099 | None:intergenic |
| CCCAGGACTCGGCGGAGGTT+TGG | 0.365068 | 1.2:+50395707 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1.2:+50394896 | None:intergenic |
| CTCTTCTCATCCTTCTTCAC+AGG | 0.394010 | 1.2:+50394974 | None:intergenic |
| AGAAGGGTTATGTGCTTCCT+AGG | 0.398377 | 1.2:-50395063 | MS.gene30895:CDS |
| AAGGCTATCCTTGGCCTTCT+CGG | 0.399953 | 1.2:+50395348 | None:intergenic |
| GAAGAGGAAGACTGTCTCTA+AGG | 0.403102 | 1.2:-50394816 | MS.gene30895:intron |
| ATCAGGGATTGGGAGGGAGG+TGG | 0.411958 | 1.2:+50395831 | None:intergenic |
| ATGAGATTCAGAGTGTTGTT+AGG | 0.418477 | 1.2:-50394997 | MS.gene30895:CDS |
| TGTTTGCTCCTACCCGGATC+TGG | 0.420217 | 1.2:-50395585 | MS.gene30895:CDS |
| GGCACGGTGGGTACCACCTC+CGG | 0.421789 | 1.2:+50395648 | None:intergenic |
| ATGGCTGCACGCATGACATC+AGG | 0.422229 | 1.2:+50395814 | None:intergenic |
| CCAAACCTCCGCCGAGTCCT+GGG | 0.426021 | 1.2:-50395707 | MS.gene30895:CDS |
| TTTCACTGCTTTCGCTCCTT+CGG | 0.428218 | 1.2:+50395249 | None:intergenic |
| TTGTGAGACACCCAACCATT+TGG | 0.429854 | 1.2:+50393435 | None:intergenic |
| ATCCCTCGTGTTGCCGGAGG+TGG | 0.430060 | 1.2:-50395661 | MS.gene30895:CDS |
| TAAGACTGCTTTCGAGAAGT+TGG | 0.434224 | 1.2:-50395125 | MS.gene30895:CDS |
| GTTGTTGGTGATTCTGCTGA+AGG | 0.435579 | 1.2:-50395430 | MS.gene30895:CDS |
| AAAAGCATGGTACAATACTA+TGG | 0.446415 | 1.2:-50393494 | MS.gene30895:CDS |
| GAGAGGACGAGCTGCGGCGG+CGG | 0.447733 | 1.2:+50395897 | None:intergenic |
| CGTGCCGGACAAGCTGCTTT+CGG | 0.452166 | 1.2:-50395631 | MS.gene30895:CDS |
| CTCCGGCAACACGAGGGATA+CGG | 0.453243 | 1.2:+50395665 | None:intergenic |
| CTCGGCGGAGGTTTGGTGAC+CGG | 0.453892 | 1.2:+50395714 | None:intergenic |
| GACAACTTCTCCAAATGGTT+GGG | 0.457303 | 1.2:-50393445 | MS.gene30895:CDS |
| TGGACGAAGTTGACGATGTC+GGG | 0.461251 | 1.2:+50395787 | None:intergenic |
| CACGCATGACATCAGGGATT+GGG | 0.461277 | 1.2:+50395821 | None:intergenic |
| GTCACTGTCCACACCGTTGA+AGG | 0.464341 | 1.2:-50395874 | MS.gene30895:CDS |
| GGCTGACGGCGTATGGTTGG+CGG | 0.467373 | 1.2:+50395743 | None:intergenic |
| TGCGGCTGACGGCGTATGGT+TGG | 0.471375 | 1.2:+50395740 | None:intergenic |
| CTTTGCTTGCTGAAGCTGAA+AGG | 0.471531 | 1.2:-50394868 | MS.gene30895:CDS |
| TCCGGCAACACGAGGGATAC+GGG | 0.473737 | 1.2:+50395666 | None:intergenic |
| CGACAACTTCTCCAAATGGT+TGG | 0.475554 | 1.2:-50393446 | MS.gene30895:CDS |
| GCTGACGGCGTATGGTTGGC+GGG | 0.478202 | 1.2:+50395744 | None:intergenic |
| GCACGCATGACATCAGGGAT+TGG | 0.480128 | 1.2:+50395820 | None:intergenic |
| TTGTTCTCGCTCGTGGTCAC+CGG | 0.483198 | 1.2:-50395480 | MS.gene30895:CDS |
| GAGGGAGGTGGGAGTGTCAG+TGG | 0.486549 | 1.2:+50395843 | None:intergenic |
| AATTCGACAACTTCTCCAAA+TGG | 0.487072 | 1.2:-50393450 | MS.gene30895:CDS |
| GTTACCGAAAGCAGCTTGTC+CGG | 0.489007 | 1.2:+50395627 | None:intergenic |
| TTTGCTTGCTGAAGCTGAAA+GGG | 0.491694 | 1.2:-50394867 | MS.gene30895:CDS |
| CTTGGGATCCGTCCTGGTAA+AGG | 0.491818 | 1.2:-50395328 | MS.gene30895:CDS |
| GCTTTGCGGCTGACGGCGTA+TGG | 0.494149 | 1.2:+50395736 | None:intergenic |
| CCGTAGGTATATCTCTCGTA+AGG | 0.494610 | 1.2:-50395293 | MS.gene30895:CDS |
| GGTGCCATTTACGCCAGATC+CGG | 0.497461 | 1.2:+50395572 | None:intergenic |
| AAGATTCAACCTTTCAACAT+TGG | 0.499445 | 1.2:+50395195 | None:intergenic |
| TGTGCTTCCTAGGGCTAAGA+TGG | 0.502217 | 1.2:-50395053 | MS.gene30895:CDS |
| CAAGCCTTCGGAGAAGAAGA+AGG | 0.503462 | 1.2:-50395080 | MS.gene30895:CDS |
| GGAAGAAGCTACTGCTATCA+AGG | 0.505228 | 1.2:-50393524 | MS.gene30895:CDS |
| TCCGCCGAGTCCTGGGGTAC+CGG | 0.506294 | 1.2:-50395700 | MS.gene30895:CDS |
| TCAGGGATTGGGAGGGAGGT+GGG | 0.510339 | 1.2:+50395832 | None:intergenic |
| GTCGCATGTTTGCTCCTACC+CGG | 0.517664 | 1.2:-50395591 | MS.gene30895:CDS |
| AGTGGCCATGTCACCTTCAA+CGG | 0.518640 | 1.2:+50395861 | None:intergenic |
| AGGAAAAGCTTGATAAGAAG+AGG | 0.518903 | 1.2:-50394832 | MS.gene30895:CDS |
| AGGTTTGGTGACCGGCTTTG+CGG | 0.519498 | 1.2:+50395722 | None:intergenic |
| GACAGCACGTCCGGTACCCC+AGG | 0.521322 | 1.2:+50395690 | None:intergenic |
| GAGAAGGCCAAGGATAGCCT+TGG | 0.521827 | 1.2:-50395346 | MS.gene30895:CDS |
| TAACCCTTCTTCTTCTCCGA+AGG | 0.522957 | 1.2:+50395076 | None:intergenic |
| TACGCCGTCAGCCGCAAAGC+CGG | 0.523016 | 1.2:-50395733 | MS.gene30895:CDS |
| GACATCAGGGATTGGGAGGG+AGG | 0.523295 | 1.2:+50395828 | None:intergenic |
| GATAGCCTTGGGATCCGTCC+TGG | 0.524843 | 1.2:-50395334 | MS.gene30895:CDS |
| CAAAGGATTCTTCTTCAAAG+TGG | 0.526268 | 1.2:+50394949 | None:intergenic |
| AGAAGGCCAAGGATAGCCTT+GGG | 0.528805 | 1.2:-50395345 | MS.gene30895:CDS |
| GTTGACGATGTCGGGACGGA+TGG | 0.533971 | 1.2:+50395795 | None:intergenic |
| ACGGATCCCAAGGCTATCCT+TGG | 0.535964 | 1.2:+50395339 | None:intergenic |
| CCTTCACTTGTTCTCGCTCG+TGG | 0.537661 | 1.2:-50395487 | MS.gene30895:CDS |
| TGGTGAATTCTGATTTGACT+AGG | 0.539110 | 1.2:-50395033 | MS.gene30895:CDS |
| AGCAGCTTGTCCGGCACGGT+GGG | 0.541824 | 1.2:+50395636 | None:intergenic |
| TGTTGTTAGGCCTGTGAAGA+AGG | 0.543579 | 1.2:-50394984 | MS.gene30895:CDS |
| GTGACCGGCTTTGCGGCTGA+CGG | 0.544837 | 1.2:+50395729 | None:intergenic |
| GATACGGGAGACAGCACGTC+CGG | 0.546656 | 1.2:+50395681 | None:intergenic |
| CTGTGAAGAAGGATGAGAAG+AGG | 0.551783 | 1.2:-50394973 | MS.gene30895:CDS |
| TTGATTGTTTATGGTACCGA+AGG | 0.552842 | 1.2:-50395265 | MS.gene30895:CDS |
| CCCTGATGCCGAGAAGGCCA+AGG | 0.558129 | 1.2:-50395356 | MS.gene30895:CDS |
| GAATTCACCATCTTAGCCCT+AGG | 0.564088 | 1.2:+50395046 | None:intergenic |
| ACTCAGGAACAGTTTCGATC+CGG | 0.567598 | 1.2:+50395461 | None:intergenic |
| GCTACTGCTATCAAGGCTGC+AGG | 0.570583 | 1.2:-50393517 | MS.gene30895:CDS |
| CCTTGGCCTTCTCGGCATCA+GGG | 0.570713 | 1.2:+50395356 | None:intergenic |
| ACGTCCGGTACCCCAGGACT+CGG | 0.570995 | 1.2:+50395696 | None:intergenic |
| TGAAGGTGTTGAGAAGACTA+AGG | 0.571093 | 1.2:-50395413 | MS.gene30895:CDS |
| AGAATCTCAATGTTATGTTG+AGG | 0.573663 | 1.2:-50394925 | MS.gene30895:CDS |
| CGTAGGTATATCTCTCGTAA+GGG | 0.577073 | 1.2:-50395292 | MS.gene30895:CDS |
| GCAGAATCACCAACAACAAG+AGG | 0.578714 | 1.2:+50395436 | None:intergenic |
| GTGGACGAAGTTGACGATGT+CGG | 0.580395 | 1.2:+50395786 | None:intergenic |
| AGCTTACCCTGATGCCGAGA+AGG | 0.582607 | 1.2:-50395362 | MS.gene30895:CDS |
| GGTACCCCAGGACTCGGCGG+AGG | 0.582954 | 1.2:+50395702 | None:intergenic |
| CTTTACCAGGACGGATCCCA+AGG | 0.583493 | 1.2:+50395329 | None:intergenic |
| GTGCCATTTACGCCAGATCC+GGG | 0.584645 | 1.2:+50395573 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1.2:-50394895 | MS.gene30895:CDS |
| GACGAGAGGACGAGCTGCGG+CGG | 0.586898 | 1.2:+50395894 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1.2:-50394891 | MS.gene30895:CDS |
| TCGGTACCATAAACAATCAA+AGG | 0.593031 | 1.2:+50395268 | None:intergenic |
| ATAACATTGAGATTCTTCAA+AGG | 0.595302 | 1.2:+50394932 | None:intergenic |
| CATTTACGCCAGATCCGGGT+AGG | 0.597970 | 1.2:+50395577 | None:intergenic |
| TGAAAGGGTTAAGTCCAAGA+AGG | 0.600060 | 1.2:-50394852 | MS.gene30895:CDS |
| GCATGACATCAGGGATTGGG+AGG | 0.602783 | 1.2:+50395824 | None:intergenic |
| AAGGTAAAATGCGTAACCGT+AGG | 0.603588 | 1.2:-50395309 | MS.gene30895:CDS |
| TGTGAAGAAGGATGAGAAGA+GGG | 0.603591 | 1.2:-50394972 | MS.gene30895:CDS |
| GGAGGTGGTACCCACCGTGC+CGG | 0.603632 | 1.2:-50395646 | MS.gene30895:CDS |
| GTACCACCTCCGGCAACACG+AGG | 0.605092 | 1.2:+50395658 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1.2:+50395445 | None:intergenic |
| CCACACCGTTGAAGGTGACA+TGG | 0.613167 | 1.2:-50395866 | MS.gene30895:CDS |
| GAAGGGTTATGTGCTTCCTA+GGG | 0.613508 | 1.2:-50395062 | MS.gene30895:CDS |
| CGAAAGCAGCTTGTCCGGCA+CGG | 0.614513 | 1.2:+50395632 | None:intergenic |
| CGAAGTTGACGATGTCGGGA+CGG | 0.617896 | 1.2:+50395791 | None:intergenic |
| TTGAGATCACCAATGTTGAA+AGG | 0.623070 | 1.2:-50395204 | MS.gene30895:CDS |
| AAGCCTTCGGAGAAGAAGAA+GGG | 0.625782 | 1.2:-50395079 | MS.gene30895:CDS |
| TCAAGGCTGCAGGAAAAGCA+TGG | 0.627406 | 1.2:-50393507 | MS.gene30895:CDS |
| TGGCTGCACGCATGACATCA+GGG | 0.628185 | 1.2:+50395815 | None:intergenic |
| AATCTACCTAAATGCCCACC+AGG | 0.628247 | 1.2:+50395160 | None:intergenic |
| CGTATCCCTCGTGTTGCCGG+AGG | 0.628937 | 1.2:-50395664 | MS.gene30895:CDS |
| CCACGAGCGAGAACAAGTGA+AGG | 0.635968 | 1.2:+50395487 | None:intergenic |
| CAAACCTCCGCCGAGTCCTG+GGG | 0.638408 | 1.2:-50395706 | MS.gene30895:CDS |
| CATGACATCAGGGATTGGGA+GGG | 0.640964 | 1.2:+50395825 | None:intergenic |
| CCATGTCACCTTCAACGGTG+TGG | 0.644494 | 1.2:+50395866 | None:intergenic |
| AAGCAGCTTGTCCGGCACGG+TGG | 0.654435 | 1.2:+50395635 | None:intergenic |
| AGTGACGAGAGGACGAGCTG+CGG | 0.658727 | 1.2:+50395891 | None:intergenic |
| TTCGGTAACATGTGTCGTGG+TGG | 0.660053 | 1.2:-50395613 | MS.gene30895:CDS |
| ACGGTGTGGACAGTGACGAG+AGG | 0.675130 | 1.2:+50395880 | None:intergenic |
| ACATTGGTGATCTCAACACC+AGG | 0.677167 | 1.2:+50395211 | None:intergenic |
| TCCGGTACCCCAGGACTCGG+CGG | 0.686621 | 1.2:+50395699 | None:intergenic |
| GCTTTCGGTAACATGTGTCG+TGG | 0.703272 | 1.2:-50395616 | MS.gene30895:CDS |
| CCTTACGAGAGATATACCTA+CGG | 0.703573 | 1.2:+50395293 | None:intergenic |
| TACCACCTCCGGCAACACGA+GGG | 0.703891 | 1.2:+50395659 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATTTGTTTGTGTATT+TGG | - | chr1.2:50395479-50395498 | MS.gene30895:CDS | 15.0% |
| !! | TGTATAAATGATATTACTAA+TGG | - | chr1.2:50395398-50395417 | MS.gene30895:CDS | 15.0% |
| !!! | TATCATTTTCAAATTCTAAA+GGG | + | chr1.2:50394832-50394851 | None:intergenic | 15.0% |
| !!! | TTATCATTTTCAAATTCTAA+AGG | + | chr1.2:50394833-50394852 | None:intergenic | 15.0% |
| !! | ACATGTATGTTAAATGTAAT+TGG | - | chr1.2:50395511-50395530 | MS.gene30895:CDS | 20.0% |
| !! | ACTAATTAACAACAATGTAA+TGG | + | chr1.2:50394592-50394611 | None:intergenic | 20.0% |
| !! | ATAATATTGTATGTTGGAAT+TGG | + | chr1.2:50395447-50395466 | None:intergenic | 20.0% |
| !! | ATTCCAACATACAATATTAT+AGG | - | chr1.2:50395447-50395466 | MS.gene30895:CDS | 20.0% |
| !! | ATTTGAGTGAAGATTTAATT+TGG | - | chr1.2:50394697-50394716 | MS.gene30895:intron | 20.0% |
| !! | TAACCTATAATATTGTATGT+TGG | + | chr1.2:50395453-50395472 | None:intergenic | 20.0% |
| !!! | TTCTAAAATGAAACTTAGAT+TGG | - | chr1.2:50394756-50394775 | MS.gene30895:intron | 20.0% |
| !!! | TTTGAAATATTGTTGATGTA+GGG | - | chr1.2:50395069-50395088 | MS.gene30895:CDS | 20.0% |
| !!! | TTTTGAAATATTGTTGATGT+AGG | - | chr1.2:50395068-50395087 | MS.gene30895:CDS | 20.0% |
| ! | ACAAAGATATTCAACTAACA+TGG | + | chr1.2:50395747-50395766 | None:intergenic | 25.0% |
| ! | ATAACATTGAGATTCTTCAA+AGG | + | chr1.2:50394404-50394423 | None:intergenic | 25.0% |
| ! | ATGATCCATAAAACAACAAA+AGG | + | chr1.2:50395049-50395068 | None:intergenic | 25.0% |
| ! | ATTTAGGTAGATTTGTGATT+TGG | - | chr1.2:50394183-50394202 | MS.gene30895:intron | 25.0% |
| ! | CTCAATTGACATATATACTA+GGG | + | chr1.2:50395011-50395030 | None:intergenic | 25.0% |
| ! | TCTCAATTGACATATATACT+AGG | + | chr1.2:50395012-50395031 | None:intergenic | 25.0% |
| ! | TTAGATTGGTAAGCAATAAT+AGG | - | chr1.2:50394770-50394789 | MS.gene30895:intron | 25.0% |
| ! | TTGAAATATTGTTGATGTAG+GGG | - | chr1.2:50395070-50395089 | MS.gene30895:CDS | 25.0% |
| !! | CTTTAAAAGAGTTCATCAAA+TGG | + | chr1.2:50395193-50395212 | None:intergenic | 25.0% |
| !! | TTTAGAATATCTATATCGTG+AGG | + | chr1.2:50394743-50394762 | None:intergenic | 25.0% |
| !!! | ATCAAGCTTTTGAAATCAAT+TGG | - | chr1.2:50393948-50393967 | MS.gene30895:intron | 25.0% |
| !!! | ATTCACCTTTTGTTGTTTTA+TGG | - | chr1.2:50395041-50395060 | MS.gene30895:CDS | 25.0% |
| !!! | TCTGATTCACATTGATTTTA+CGG | + | chr1.2:50393785-50393804 | None:intergenic | 25.0% |
| AAGATTCAACCTTTCAACAT+TGG | + | chr1.2:50394141-50394160 | None:intergenic | 30.0% | |
| ACAAGAGTGAATACACAATT+TGG | + | chr1.2:50395134-50395153 | None:intergenic | 30.0% | |
| AGAATCTCAATGTTATGTTG+AGG | - | chr1.2:50394408-50394427 | MS.gene30895:intron | 30.0% | |
| ATCTCTCATTTCCAATATGA+TGG | - | chr1.2:50394923-50394942 | MS.gene30895:CDS | 30.0% | |
| CATGCTTGACATTATTAACT+TGG | - | chr1.2:50394890-50394909 | MS.gene30895:CDS | 30.0% | |
| CTTGTCAAAAGAACCATAAA+TGG | + | chr1.2:50394237-50394256 | None:intergenic | 30.0% | |
| GAGGACTAAAACAAATTCAA+GGG | + | chr1.2:50394724-50394743 | None:intergenic | 30.0% | |
| GGACTATAATGACAACAAAT+TGG | + | chr1.2:50394990-50395009 | None:intergenic | 30.0% | |
| TAATGTCAATGCCATCATAT+TGG | + | chr1.2:50394937-50394956 | None:intergenic | 30.0% | |
| TGAGGACTAAAACAAATTCA+AGG | + | chr1.2:50394725-50394744 | None:intergenic | 30.0% | |
| ! | AAAAGCATGGTACAATACTA+TGG | - | chr1.2:50395839-50395858 | MS.gene30895:CDS | 30.0% |
| ! | AAGAGTTCATCAAATGGATT+TGG | + | chr1.2:50395187-50395206 | None:intergenic | 30.0% |
| ! | AGAGTTCATCAAATGGATTT+GGG | + | chr1.2:50395186-50395205 | None:intergenic | 30.0% |
| ! | GAAATGTATTTGAAACCAAG+TGG | + | chr1.2:50394961-50394980 | None:intergenic | 30.0% |
| !!! | ATAGAGACTGATTTGCTTTT+TGG | - | chr1.2:50395360-50395379 | MS.gene30895:CDS | 30.0% |
| !!! | TCATTTTTAGTGTTACTTGC+AGG | - | chr1.2:50395220-50395239 | MS.gene30895:CDS | 30.0% |
| !!! | TTTTTGCTGTTTGTCTACTT+TGG | - | chr1.2:50395714-50395733 | MS.gene30895:CDS | 30.0% |
| AACAGCAAAAACATGCATCA+AGG | + | chr1.2:50395705-50395724 | None:intergenic | 35.0% | |
| AAGGGTCCTTTGATTGTTTA+TGG | - | chr1.2:50394059-50394078 | MS.gene30895:intron | 35.0% | |
| AATTCGACAACTTCTCCAAA+TGG | - | chr1.2:50395883-50395902 | MS.gene30895:CDS | 35.0% | |
| ACAGCAAAAACATGCATCAA+GGG | + | chr1.2:50395704-50395723 | None:intergenic | 35.0% | |
| ACTTGCAGGTTTAGATTGAT+TGG | - | chr1.2:50395234-50395253 | MS.gene30895:CDS | 35.0% | |
| AGGAAAAGCTTGATAAGAAG+AGG | - | chr1.2:50394501-50394520 | MS.gene30895:intron | 35.0% | |
| CAAAGGATTCTTCTTCAAAG+TGG | + | chr1.2:50394387-50394406 | None:intergenic | 35.0% | |
| CAACCATGTATGAAGATGAA+TGG | - | chr1.2:50395651-50395670 | MS.gene30895:CDS | 35.0% | |
| CAACCATTCATCTTCATACA+TGG | + | chr1.2:50395657-50395676 | None:intergenic | 35.0% | |
| GAGAAGTTGGATTCCATTTA+TGG | - | chr1.2:50394221-50394240 | MS.gene30895:intron | 35.0% | |
| TCGGTACCATAAACAATCAA+AGG | + | chr1.2:50394068-50394087 | None:intergenic | 35.0% | |
| TTGAGATCACCAATGTTGAA+AGG | - | chr1.2:50394129-50394148 | MS.gene30895:intron | 35.0% | |
| ! | AAAGCTTTTCGCAATATTCC+TGG | - | chr1.2:50394104-50394123 | MS.gene30895:intron | 35.0% |
| ! | CTTATCAAGCTTTTCCTTCT+TGG | + | chr1.2:50394498-50394517 | None:intergenic | 35.0% |
| ! | TGGTGAATTCTGATTTGACT+AGG | - | chr1.2:50394300-50394319 | MS.gene30895:intron | 35.0% |
| ! | TTACGCATTTTACCTTTACC+AGG | + | chr1.2:50394020-50394039 | None:intergenic | 35.0% |
| ! | TTGATTGTTTATGGTACCGA+AGG | - | chr1.2:50394068-50394087 | MS.gene30895:intron | 35.0% |
| !! | ATGAGATTCAGAGTGTTGTT+AGG | - | chr1.2:50394336-50394355 | MS.gene30895:intron | 35.0% |
| AAGGTAAAATGCGTAACCGT+AGG | - | chr1.2:50394024-50394043 | MS.gene30895:intron | 40.0% | |
| ATAGGCTATGTTGCTCTGTA+AGG | - | chr1.2:50394788-50394807 | MS.gene30895:intron | 40.0% | |
| CCTTACGAGAGATATACCTA+CGG | + | chr1.2:50394043-50394062 | None:intergenic | 40.0% | |
| CGTAGGTATATCTCTCGTAA+GGG | - | chr1.2:50394041-50394060 | MS.gene30895:intron | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | + | chr1.2:50394440-50394459 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | - | chr1.2:50394438-50394457 | MS.gene30895:intron | 40.0% | |
| GACAACTTCTCCAAATGGTT+GGG | - | chr1.2:50395888-50395907 | MS.gene30895:CDS | 40.0% | |
| GACCTGAAACTTGAAATTGC+AGG | + | chr1.2:50395112-50395131 | None:intergenic | 40.0% | |
| TAAGACTGCTTTCGAGAAGT+TGG | - | chr1.2:50394208-50394227 | MS.gene30895:intron | 40.0% | |
| TGAAAGGGTTAAGTCCAAGA+AGG | - | chr1.2:50394481-50394500 | MS.gene30895:intron | 40.0% | |
| TGTGAAGAAGGATGAGAAGA+GGG | - | chr1.2:50394361-50394380 | MS.gene30895:intron | 40.0% | |
| ! | ATCAAATGGATTTGGGTCAC+TGG | + | chr1.2:50395179-50395198 | None:intergenic | 40.0% |
| ! | GCATTTTACCTTTACCAGGA+CGG | + | chr1.2:50394016-50394035 | None:intergenic | 40.0% |
| ! | TGGTTCTTTTGACAAGCCTT+CGG | - | chr1.2:50394241-50394260 | MS.gene30895:intron | 40.0% |
| ! | TTTGCTTGCTGAAGCTGAAA+GGG | - | chr1.2:50394466-50394485 | MS.gene30895:intron | 40.0% |
| !! | CGTTTTTGGAGATATTGGAG+TGG | + | chr1.2:50393569-50393588 | None:intergenic | 40.0% |
| !! | GTCCTGCAATTTCAAGTTTC+AGG | - | chr1.2:50395107-50395126 | MS.gene30895:CDS | 40.0% |
| !! | TGAAGGTGTTGAGAAGACTA+AGG | - | chr1.2:50393920-50393939 | MS.gene30895:intron | 40.0% |
| !! | TGGCATTGACATTATCCACT+TGG | - | chr1.2:50394943-50394962 | MS.gene30895:CDS | 40.0% |
| !!! | AATCTTTTGAAGCTTGCACC+TGG | - | chr1.2:50394155-50394174 | MS.gene30895:intron | 40.0% |
| AAGCCTTCGGAGAAGAAGAA+GGG | - | chr1.2:50394254-50394273 | MS.gene30895:intron | 45.0% | |
| AATCTACCTAAATGCCCACC+AGG | + | chr1.2:50394176-50394195 | None:intergenic | 45.0% | |
| AATTACCCCTGTTCATTCCC+AGG | - | chr1.2:50395788-50395807 | MS.gene30895:CDS | 45.0% | |
| ACTCAGGAACAGTTTCGATC+CGG | + | chr1.2:50393875-50393894 | None:intergenic | 45.0% | |
| AGAAGGGTTATGTGCTTCCT+AGG | - | chr1.2:50394270-50394289 | MS.gene30895:intron | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | + | chr1.2:50393891-50393910 | None:intergenic | 45.0% | |
| CCGTAGGTATATCTCTCGTA+AGG | - | chr1.2:50394040-50394059 | MS.gene30895:intron | 45.0% | |
| CGACAACTTCTCCAAATGGT+TGG | - | chr1.2:50395887-50395906 | MS.gene30895:CDS | 45.0% | |
| CTCTTCTCATCCTTCTTCAC+AGG | + | chr1.2:50394362-50394381 | None:intergenic | 45.0% | |
| CTGTGAAGAAGGATGAGAAG+AGG | - | chr1.2:50394360-50394379 | MS.gene30895:intron | 45.0% | |
| CTTCTTCCTGGGAATGAACA+GGG | + | chr1.2:50395797-50395816 | None:intergenic | 45.0% | |
| GAAGAGGAAGACTGTCTCTA+AGG | - | chr1.2:50394517-50394536 | MS.gene30895:intron | 45.0% | |
| GAAGGGTTATGTGCTTCCTA+GGG | - | chr1.2:50394271-50394290 | MS.gene30895:intron | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | + | chr1.2:50394290-50394309 | None:intergenic | 45.0% | |
| GATAGCAGTAGCTTCTTCCT+GGG | + | chr1.2:50395808-50395827 | None:intergenic | 45.0% | |
| GCAAAAACATGCATCAAGGG+AGG | + | chr1.2:50395701-50395720 | None:intergenic | 45.0% | |
| GCAGAATCACCAACAACAAG+AGG | + | chr1.2:50393900-50393919 | None:intergenic | 45.0% | |
| GGAAGAAGCTACTGCTATCA+AGG | - | chr1.2:50395809-50395828 | MS.gene30895:CDS | 45.0% | |
| TAACCCTTCTTCTTCTCCGA+AGG | + | chr1.2:50394260-50394279 | None:intergenic | 45.0% | |
| TGATAGCAGTAGCTTCTTCC+TGG | + | chr1.2:50395809-50395828 | None:intergenic | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | - | chr1.2:50394442-50394461 | MS.gene30895:intron | 45.0% | |
| TGTTGTTAGGCCTGTGAAGA+AGG | - | chr1.2:50394349-50394368 | MS.gene30895:intron | 45.0% | |
| TTCTTCCTGGGAATGAACAG+GGG | + | chr1.2:50395796-50395815 | None:intergenic | 45.0% | |
| TTGTGAGACACCCAACCATT+TGG | + | chr1.2:50395901-50395920 | None:intergenic | 45.0% | |
| TTTCACTGCTTTCGCTCCTT+CGG | + | chr1.2:50394087-50394106 | None:intergenic | 45.0% | |
| ! | ACATTGGTGATCTCAACACC+AGG | + | chr1.2:50394125-50394144 | None:intergenic | 45.0% |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | - | chr1.2:50393888-50393907 | MS.gene30895:intron | 45.0% |
| ! | CTTTGCTTGCTGAAGCTGAA+AGG | - | chr1.2:50394465-50394484 | MS.gene30895:intron | 45.0% |
| !! | GTTGTTGGTGATTCTGCTGA+AGG | - | chr1.2:50393903-50393922 | MS.gene30895:intron | 45.0% |
| !!! | TTTTGAAGCTTGCACCTGGT+GGG | - | chr1.2:50394159-50394178 | MS.gene30895:intron | 45.0% |
| AGAAGGCCAAGGATAGCCTT+GGG | - | chr1.2:50393988-50394007 | MS.gene30895:intron | 50.0% | |
| AGTGGCCATGTCACCTTCAA+CGG | + | chr1.2:50393475-50393494 | None:intergenic | 50.0% | |
| CAAGCCTTCGGAGAAGAAGA+AGG | - | chr1.2:50394253-50394272 | MS.gene30895:intron | 50.0% | |
| CACGCATGACATCAGGGATT+GGG | + | chr1.2:50393515-50393534 | None:intergenic | 50.0% | |
| CATGACATCAGGGATTGGGA+GGG | + | chr1.2:50393511-50393530 | None:intergenic | 50.0% | |
| GCTTCTTCCTGGGAATGAAC+AGG | + | chr1.2:50395798-50395817 | None:intergenic | 50.0% | |
| GCTTTCGGTAACATGTGTCG+TGG | - | chr1.2:50393717-50393736 | MS.gene30895:intron | 50.0% | |
| GTGGACGAAGTTGACGATGT+CGG | + | chr1.2:50393550-50393569 | None:intergenic | 50.0% | |
| GTTACCGAAAGCAGCTTGTC+CGG | + | chr1.2:50393709-50393728 | None:intergenic | 50.0% | |
| TCAAGGCTGCAGGAAAAGCA+TGG | - | chr1.2:50395826-50395845 | MS.gene30895:CDS | 50.0% | |
| TGGACGAAGTTGACGATGTC+GGG | + | chr1.2:50393549-50393568 | None:intergenic | 50.0% | |
| TGTGCTTCCTAGGGCTAAGA+TGG | - | chr1.2:50394280-50394299 | MS.gene30895:intron | 50.0% | |
| TTCGGTAACATGTGTCGTGG+TGG | - | chr1.2:50393720-50393739 | MS.gene30895:intron | 50.0% | |
| ! | AAGGCTATCCTTGGCCTTCT+CGG | + | chr1.2:50393988-50394007 | None:intergenic | 50.0% |
| !! | GCGGGCGTTTTTGGAGATAT+TGG | + | chr1.2:50393574-50393593 | None:intergenic | 50.0% |
| !!! | CTTTTGAAGCTTGCACCTGG+TGG | - | chr1.2:50394158-50394177 | MS.gene30895:intron | 50.0% |
| AAGGGAGGAAGCAGCACACA+TGG | + | chr1.2:50395686-50395705 | None:intergenic | 55.0% | |
| ACGGATCCCAAGGCTATCCT+TGG | + | chr1.2:50393997-50394016 | None:intergenic | 55.0% | |
| AGCTTACCCTGATGCCGAGA+AGG | - | chr1.2:50393971-50393990 | MS.gene30895:intron | 55.0% | |
| ATGGCTGCACGCATGACATC+AGG | + | chr1.2:50393522-50393541 | None:intergenic | 55.0% | |
| CATTTACGCCAGATCCGGGT+AGG | + | chr1.2:50393759-50393778 | None:intergenic | 55.0% | |
| CCACACCGTTGAAGGTGACA+TGG | - | chr1.2:50393467-50393486 | MS.gene30895:CDS | 55.0% | |
| CCACGAGCGAGAACAAGTGA+AGG | + | chr1.2:50393849-50393868 | None:intergenic | 55.0% | |
| CCATGTCACCTTCAACGGTG+TGG | + | chr1.2:50393470-50393489 | None:intergenic | 55.0% | |
| CCTTCACTTGTTCTCGCTCG+TGG | - | chr1.2:50393846-50393865 | MS.gene30895:intron | 55.0% | |
| CGAAGTTGACGATGTCGGGA+CGG | + | chr1.2:50393545-50393564 | None:intergenic | 55.0% | |
| CTACCCGGATCTGGCGTAAA+TGG | - | chr1.2:50393757-50393776 | MS.gene30895:intron | 55.0% | |
| CTTGGGATCCGTCCTGGTAA+AGG | - | chr1.2:50394005-50394024 | MS.gene30895:intron | 55.0% | |
| CTTTACCAGGACGGATCCCA+AGG | + | chr1.2:50394007-50394026 | None:intergenic | 55.0% | |
| GAGAAGGCCAAGGATAGCCT+TGG | - | chr1.2:50393987-50394006 | MS.gene30895:intron | 55.0% | |
| GCACGCATGACATCAGGGAT+TGG | + | chr1.2:50393516-50393535 | None:intergenic | 55.0% | |
| GCATGACATCAGGGATTGGG+AGG | + | chr1.2:50393512-50393531 | None:intergenic | 55.0% | |
| GCTACTGCTATCAAGGCTGC+AGG | - | chr1.2:50395816-50395835 | MS.gene30895:CDS | 55.0% | |
| GTCACTGTCCACACCGTTGA+AGG | - | chr1.2:50393459-50393478 | MS.gene30895:CDS | 55.0% | |
| GTCGCATGTTTGCTCCTACC+CGG | - | chr1.2:50393742-50393761 | MS.gene30895:intron | 55.0% | |
| TGGCTGCACGCATGACATCA+GGG | + | chr1.2:50393521-50393540 | None:intergenic | 55.0% | |
| TGTTTGCTCCTACCCGGATC+TGG | - | chr1.2:50393748-50393767 | MS.gene30895:intron | 55.0% | |
| TTGTTCTCGCTCGTGGTCAC+CGG | - | chr1.2:50393853-50393872 | MS.gene30895:intron | 55.0% | |
| ! | CTTGCACCTGGTGGGCATTT+AGG | - | chr1.2:50394167-50394186 | MS.gene30895:intron | 55.0% |
| !! | AGGTTTGGTGACCGGCTTTG+CGG | + | chr1.2:50393614-50393633 | None:intergenic | 55.0% |
| !! | GGTGCCATTTACGCCAGATC+CGG | + | chr1.2:50393764-50393783 | None:intergenic | 55.0% |
| !! | GTATGGTTGGCGGGCGTTTT+TGG | + | chr1.2:50393583-50393602 | None:intergenic | 55.0% |
| !! | GTGCCATTTACGCCAGATCC+GGG | + | chr1.2:50393763-50393782 | None:intergenic | 55.0% |
| ACGGTGTGGACAGTGACGAG+AGG | + | chr1.2:50393456-50393475 | None:intergenic | 60.0% | |
| AGTGACGAGAGGACGAGCTG+CGG | + | chr1.2:50393445-50393464 | None:intergenic | 60.0% | |
| ATCAGGGATTGGGAGGGAGG+TGG | + | chr1.2:50393505-50393524 | None:intergenic | 60.0% | |
| CGAAAGCAGCTTGTCCGGCA+CGG | + | chr1.2:50393704-50393723 | None:intergenic | 60.0% | |
| CTCCGGCAACACGAGGGATA+CGG | + | chr1.2:50393671-50393690 | None:intergenic | 60.0% | |
| GACATCAGGGATTGGGAGGG+AGG | + | chr1.2:50393508-50393527 | None:intergenic | 60.0% | |
| GATACGGGAGACAGCACGTC+CGG | + | chr1.2:50393655-50393674 | None:intergenic | 60.0% | |
| GTTGACGATGTCGGGACGGA+TGG | + | chr1.2:50393541-50393560 | None:intergenic | 60.0% | |
| TACCACCTCCGGCAACACGA+GGG | + | chr1.2:50393677-50393696 | None:intergenic | 60.0% | |
| TCAGGGATTGGGAGGGAGGT+GGG | + | chr1.2:50393504-50393523 | None:intergenic | 60.0% | |
| TCCCGTATCCCTCGTGTTGC+CGG | - | chr1.2:50393666-50393685 | MS.gene30895:intron | 60.0% | |
| TCCGGCAACACGAGGGATAC+GGG | + | chr1.2:50393670-50393689 | None:intergenic | 60.0% | |
| ! | CCTTGGCCTTCTCGGCATCA+GGG | + | chr1.2:50393980-50393999 | None:intergenic | 60.0% |
| ! | CGTGCCGGACAAGCTGCTTT+CGG | - | chr1.2:50393702-50393721 | MS.gene30895:intron | 60.0% |
| ! | GATAGCCTTGGGATCCGTCC+TGG | - | chr1.2:50393999-50394018 | MS.gene30895:intron | 60.0% |
| ! | TCCTTGGCCTTCTCGGCATC+AGG | + | chr1.2:50393981-50394000 | None:intergenic | 60.0% |
| AAGCAGCTTGTCCGGCACGG+TGG | + | chr1.2:50393701-50393720 | None:intergenic | 65.0% | |
| ACCAAACCTCCGCCGAGTCC+TGG | - | chr1.2:50393625-50393644 | MS.gene30895:intron | 65.0% | |
| ACGTCCGGTACCCCAGGACT+CGG | + | chr1.2:50393640-50393659 | None:intergenic | 65.0% | |
| AGCAGCTTGTCCGGCACGGT+GGG | + | chr1.2:50393700-50393719 | None:intergenic | 65.0% | |
| ATCCCTCGTGTTGCCGGAGG+TGG | - | chr1.2:50393672-50393691 | MS.gene30895:intron | 65.0% | |
| CAAACCTCCGCCGAGTCCTG+GGG | - | chr1.2:50393627-50393646 | MS.gene30895:intron | 65.0% | |
| CCAAACCTCCGCCGAGTCCT+GGG | - | chr1.2:50393626-50393645 | MS.gene30895:intron | 65.0% | |
| CCCTGATGCCGAGAAGGCCA+AGG | - | chr1.2:50393977-50393996 | MS.gene30895:intron | 65.0% | |
| CGTATCCCTCGTGTTGCCGG+AGG | - | chr1.2:50393669-50393688 | MS.gene30895:intron | 65.0% | |
| GCTGACGGCGTATGGTTGGC+GGG | + | chr1.2:50393592-50393611 | None:intergenic | 65.0% | |
| GCTTTGCGGCTGACGGCGTA+TGG | + | chr1.2:50393600-50393619 | None:intergenic | 65.0% | |
| GGCTGACGGCGTATGGTTGG+CGG | + | chr1.2:50393593-50393612 | None:intergenic | 65.0% | |
| GTACCACCTCCGGCAACACG+AGG | + | chr1.2:50393678-50393697 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGCAAAGC+CGG | - | chr1.2:50393600-50393619 | MS.gene30895:intron | 65.0% | |
| TGCGGCTGACGGCGTATGGT+TGG | + | chr1.2:50393596-50393615 | None:intergenic | 65.0% | |
| ! | GTGACCGGCTTTGCGGCTGA+CGG | + | chr1.2:50393607-50393626 | None:intergenic | 65.0% |
| !! | CTCGGCGGAGGTTTGGTGAC+CGG | + | chr1.2:50393622-50393641 | None:intergenic | 65.0% |
| !! | GAGGGAGGTGGGAGTGTCAG+TGG | + | chr1.2:50393493-50393512 | None:intergenic | 65.0% |
| CCCAGGACTCGGCGGAGGTT+TGG | + | chr1.2:50393629-50393648 | None:intergenic | 70.0% | |
| GACAGCACGTCCGGTACCCC+AGG | + | chr1.2:50393646-50393665 | None:intergenic | 70.0% | |
| GACGAGAGGACGAGCTGCGG+CGG | + | chr1.2:50393442-50393461 | None:intergenic | 70.0% | |
| GGAGGTGGTACCCACCGTGC+CGG | - | chr1.2:50393687-50393706 | MS.gene30895:intron | 70.0% | |
| GGCACGGTGGGTACCACCTC+CGG | + | chr1.2:50393688-50393707 | None:intergenic | 70.0% | |
| TCCGCCGAGTCCTGGGGTAC+CGG | - | chr1.2:50393633-50393652 | MS.gene30895:intron | 70.0% | |
| TCCGGTACCCCAGGACTCGG+CGG | + | chr1.2:50393637-50393656 | None:intergenic | 70.0% | |
| GAGAGGACGAGCTGCGGCGG+CGG | + | chr1.2:50393439-50393458 | None:intergenic | 75.0% | |
| GGTACCCCAGGACTCGGCGG+AGG | + | chr1.2:50393634-50393653 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 50393432 | 50395923 | 50393432 | ID=MS.gene30895 |
| chr1.2 | mRNA | 50393432 | 50395923 | 50393432 | ID=MS.gene30895.t1;Parent=MS.gene30895 |
| chr1.2 | exon | 50394817 | 50395923 | 50394817 | ID=MS.gene30895.t1.exon1;Parent=MS.gene30895.t1 |
| chr1.2 | CDS | 50394817 | 50395923 | 50394817 | ID=cds.MS.gene30895.t1;Parent=MS.gene30895.t1 |
| chr1.2 | exon | 50393432 | 50393545 | 50393432 | ID=MS.gene30895.t1.exon2;Parent=MS.gene30895.t1 |
| chr1.2 | CDS | 50393432 | 50393545 | 50393432 | ID=cds.MS.gene30895.t1;Parent=MS.gene30895.t1 |
| Gene Sequence |
| Protein sequence |
