Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029880.t1 | XP_013468257.1 | 98.8 | 404 | 5 | 0 | 3 | 406 | 2 | 405 | 6.00E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029880.t1 | Q9SF40 | 81.0 | 406 | 77 | 0 | 1 | 406 | 1 | 406 | 4.1e-191 | 668.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029880.t1 | A0A072VJR8 | 98.8 | 404 | 5 | 0 | 3 | 406 | 2 | 405 | 4.4e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029880.t1 | MTR_1g066990 | 99.010 | 404 | 4 | 0 | 3 | 406 | 2 | 405 | 0.0 | 818 |
| MS.gene029880.t1 | MTR_1g045410 | 93.596 | 406 | 26 | 0 | 1 | 406 | 1 | 406 | 0.0 | 739 |
| MS.gene029880.t1 | MTR_5g025120 | 93.000 | 400 | 28 | 0 | 7 | 406 | 9 | 408 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029880.t1 | AT3G09630 | 82.266 | 406 | 72 | 0 | 1 | 406 | 1 | 406 | 0.0 | 693 |
| MS.gene029880.t1 | AT3G09630 | 82.020 | 406 | 72 | 1 | 1 | 406 | 1 | 405 | 0.0 | 687 |
| MS.gene029880.t1 | AT5G02870 | 81.034 | 406 | 77 | 0 | 1 | 406 | 2 | 407 | 0.0 | 681 |
| MS.gene029880.t1 | AT5G02870 | 80.788 | 406 | 77 | 1 | 1 | 406 | 2 | 406 | 0.0 | 675 |
Find 129 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGTTGGATTCCATTTA+TGG | 0.105366 | 1.4:-53865646 | MS.gene029880:CDS |
| AAGGGTCCTTTGATTGTTTA+TGG | 0.212085 | 1.4:-53865808 | MS.gene029880:CDS |
| CTTGCACCTGGTGGGCATTT+AGG | 0.222485 | 1.4:-53865700 | MS.gene029880:CDS |
| ACCAAACCTCCGCCGAGTCC+TGG | 0.279177 | 1.4:-53866242 | MS.gene029880:CDS |
| CAACCCGGATCTGGCGTAAA+TGG | 0.284258 | 1.4:-53866110 | MS.gene029880:CDS |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1.4:-53865979 | MS.gene029880:CDS |
| TCCCGTATCCCTCGTGTTGC+CGG | 0.310391 | 1.4:-53866201 | MS.gene029880:CDS |
| ATTTAGGAAGATTTGTGATT+TGG | 0.337375 | 1.4:-53865684 | MS.gene029880:CDS |
| CTTGTCAAAAGAACCATAAA+TGG | 0.363253 | 1.4:+53865633 | None:intergenic |
| TCCTTCGCCTTCTCGGCATC+AGG | 0.364051 | 1.4:+53865889 | None:intergenic |
| CCCAGGACTCGGCGGAGGTT+TGG | 0.365068 | 1.4:+53866241 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1.4:+53865430 | None:intergenic |
| CTCTTCTCATCCTTCTTCAC+AGG | 0.394010 | 1.4:+53865508 | None:intergenic |
| AGAAGGGTTATGTGCTTCCT+AGG | 0.398377 | 1.4:-53865597 | MS.gene029880:CDS |
| GAAGAGGAAGACTGTCTCTA+AGG | 0.403102 | 1.4:-53865350 | MS.gene029880:intron |
| TGTTTGCTCCAACCCGGATC+TGG | 0.405785 | 1.4:-53866119 | MS.gene029880:CDS |
| ATCAGGGATTGGGAGGGAGG+TGG | 0.411958 | 1.4:+53866365 | None:intergenic |
| ATGAGATTCAGAGTGTTGTT+AGG | 0.418477 | 1.4:-53865531 | MS.gene029880:CDS |
| GGCACGGTGGGTACCACCTC+CGG | 0.421789 | 1.4:+53866182 | None:intergenic |
| ATGGCTGCACGCATGACATC+AGG | 0.422229 | 1.4:+53866348 | None:intergenic |
| AAGGCTATCCTTCGCCTTCT+CGG | 0.425608 | 1.4:+53865882 | None:intergenic |
| CCAAACCTCCGCCGAGTCCT+GGG | 0.426021 | 1.4:-53866241 | MS.gene029880:CDS |
| TTTCACTGCTTTCGCTCCTT+CGG | 0.428218 | 1.4:+53865783 | None:intergenic |
| TTGTGAGACACCCAACCATT+TGG | 0.429854 | 1.4:+53863969 | None:intergenic |
| ATCCCTCGTGTTGCCGGAGG+TGG | 0.430060 | 1.4:-53866195 | MS.gene029880:CDS |
| GTTGTTGGTGATTCTGCTGA+AGG | 0.435579 | 1.4:-53865964 | MS.gene029880:CDS |
| AAAAGCATGGTACAATACTA+TGG | 0.446415 | 1.4:-53864028 | MS.gene029880:CDS |
| GAGAGGACGAGCTGCGGCGG+CGG | 0.447733 | 1.4:+53866431 | None:intergenic |
| GGTGCCATTTACGCCAGATC+CGG | 0.451420 | 1.4:+53866106 | None:intergenic |
| CGTGCCGGACAAGCTGCTTT+CGG | 0.452166 | 1.4:-53866165 | MS.gene029880:CDS |
| CTCCGGCAACACGAGGGATA+CGG | 0.453243 | 1.4:+53866199 | None:intergenic |
| CTCGGCGGAGGTTTGGTGAC+CGG | 0.453892 | 1.4:+53866248 | None:intergenic |
| GACAACTTCTCCAAATGGTT+GGG | 0.457303 | 1.4:-53863979 | MS.gene029880:CDS |
| TGGACGAAGTTGACGATGTC+GGG | 0.461251 | 1.4:+53866321 | None:intergenic |
| CACGCATGACATCAGGGATT+GGG | 0.461277 | 1.4:+53866355 | None:intergenic |
| GTCACTGTCCACACCGTTGA+AGG | 0.464341 | 1.4:-53866408 | MS.gene029880:CDS |
| GGCTGACGGCGTATGGTTGG+CGG | 0.467373 | 1.4:+53866277 | None:intergenic |
| TGCGGCTGACGGCGTATGGT+TGG | 0.471375 | 1.4:+53866274 | None:intergenic |
| CTTTGCTTGCTGAAGCTGAA+AGG | 0.471531 | 1.4:-53865402 | MS.gene029880:CDS |
| TCCGGCAACACGAGGGATAC+GGG | 0.473737 | 1.4:+53866200 | None:intergenic |
| CGACAACTTCTCCAAATGGT+TGG | 0.475554 | 1.4:-53863980 | MS.gene029880:CDS |
| GCTGACGGCGTATGGTTGGC+GGG | 0.478202 | 1.4:+53866278 | None:intergenic |
| GCACGCATGACATCAGGGAT+TGG | 0.480128 | 1.4:+53866354 | None:intergenic |
| TTGTTCTCGCTCGTGGTCAC+CGG | 0.483198 | 1.4:-53866014 | MS.gene029880:CDS |
| GAGGGAGGTGGGAGTGTCAG+TGG | 0.486549 | 1.4:+53866377 | None:intergenic |
| AATTCGACAACTTCTCCAAA+TGG | 0.487072 | 1.4:-53863984 | MS.gene029880:CDS |
| GTTACCGAAAGCAGCTTGTC+CGG | 0.489007 | 1.4:+53866161 | None:intergenic |
| TTTGCTTGCTGAAGCTGAAA+GGG | 0.491694 | 1.4:-53865401 | MS.gene029880:CDS |
| CTTGGGATCCGTCCTGGTAA+AGG | 0.491818 | 1.4:-53865862 | MS.gene029880:CDS |
| GCTTTGCGGCTGACGGCGTA+TGG | 0.494149 | 1.4:+53866270 | None:intergenic |
| CCGTAGGTATATCTCTCGTA+AGG | 0.494610 | 1.4:-53865827 | MS.gene029880:CDS |
| AAGATTCAACCTTTCAACAT+TGG | 0.499445 | 1.4:+53865729 | None:intergenic |
| TGTGCTTCCTAGGGCTAAGA+TGG | 0.502217 | 1.4:-53865587 | MS.gene029880:CDS |
| CAAGCCTTCGGAGAAGAAGA+AGG | 0.503462 | 1.4:-53865614 | MS.gene029880:CDS |
| GGAAGAAGCTACTGCTATCA+AGG | 0.505228 | 1.4:-53864058 | MS.gene029880:CDS |
| TCCGCCGAGTCCTGGGGTAC+CGG | 0.506294 | 1.4:-53866234 | MS.gene029880:CDS |
| TCAGGGATTGGGAGGGAGGT+GGG | 0.510339 | 1.4:+53866366 | None:intergenic |
| AGTGGCCATGTCACCTTCAA+CGG | 0.518640 | 1.4:+53866395 | None:intergenic |
| AGGAAAAGCTTGATAAGAAG+AGG | 0.518903 | 1.4:-53865366 | MS.gene029880:CDS |
| AGGTTTGGTGACCGGCTTTG+CGG | 0.519498 | 1.4:+53866256 | None:intergenic |
| GACAGCACGTCCGGTACCCC+AGG | 0.521322 | 1.4:+53866224 | None:intergenic |
| TAACCCTTCTTCTTCTCCGA+AGG | 0.522957 | 1.4:+53865610 | None:intergenic |
| TACGCCGTCAGCCGCAAAGC+CGG | 0.523016 | 1.4:-53866267 | MS.gene029880:CDS |
| GACATCAGGGATTGGGAGGG+AGG | 0.523295 | 1.4:+53866362 | None:intergenic |
| GATAGCCTTGGGATCCGTCC+TGG | 0.524843 | 1.4:-53865868 | MS.gene029880:CDS |
| CAAAGGATTCTTCTTCAAAG+TGG | 0.526268 | 1.4:+53865483 | None:intergenic |
| AGAAGGCGAAGGATAGCCTT+GGG | 0.528805 | 1.4:-53865879 | MS.gene029880:CDS |
| GTTGACGATGTCGGGACGGA+TGG | 0.533971 | 1.4:+53866329 | None:intergenic |
| CATTTACGCCAGATCCGGGT+TGG | 0.534788 | 1.4:+53866111 | None:intergenic |
| GTGCCATTTACGCCAGATCC+GGG | 0.535132 | 1.4:+53866107 | None:intergenic |
| CCTTCACTTGTTCTCGCTCG+TGG | 0.537661 | 1.4:-53866021 | MS.gene029880:CDS |
| TGGTGAATTCTGATTTGACT+AGG | 0.539110 | 1.4:-53865567 | MS.gene029880:CDS |
| AGCAGCTTGTCCGGCACGGT+GGG | 0.541824 | 1.4:+53866170 | None:intergenic |
| TGTTGTTAGGCCTGTGAAGA+AGG | 0.543579 | 1.4:-53865518 | MS.gene029880:CDS |
| GTGACCGGCTTTGCGGCTGA+CGG | 0.544837 | 1.4:+53866263 | None:intergenic |
| GATACGGGAGACAGCACGTC+CGG | 0.546656 | 1.4:+53866215 | None:intergenic |
| GAGAAGGCGAAGGATAGCCT+TGG | 0.548067 | 1.4:-53865880 | MS.gene029880:CDS |
| CTGTGAAGAAGGATGAGAAG+AGG | 0.551783 | 1.4:-53865507 | MS.gene029880:CDS |
| TTGATTGTTTATGGTACCGA+AGG | 0.552842 | 1.4:-53865799 | MS.gene029880:CDS |
| CCTTCGCCTTCTCGGCATCA+GGG | 0.553120 | 1.4:+53865890 | None:intergenic |
| GAATTCACCATCTTAGCCCT+AGG | 0.564088 | 1.4:+53865580 | None:intergenic |
| ACTCAGGAACAGTTTCGATC+CGG | 0.567598 | 1.4:+53865995 | None:intergenic |
| GTCGCATGTTTGCTCCAACC+CGG | 0.568295 | 1.4:-53866125 | MS.gene029880:CDS |
| GCTACTGCTATCAAGGCTGC+AGG | 0.570583 | 1.4:-53864051 | MS.gene029880:CDS |
| CCCTGATGCCGAGAAGGCGA+AGG | 0.570637 | 1.4:-53865890 | MS.gene029880:CDS |
| ACGTCCGGTACCCCAGGACT+CGG | 0.570995 | 1.4:+53866230 | None:intergenic |
| TGAAGGTGTTGAGAAGACTA+AGG | 0.571093 | 1.4:-53865947 | MS.gene029880:CDS |
| AGAATCTCAATGTTATGTTG+AGG | 0.573663 | 1.4:-53865459 | MS.gene029880:CDS |
| CGTAGGTATATCTCTCGTAA+GGG | 0.577073 | 1.4:-53865826 | MS.gene029880:CDS |
| GCAGAATCACCAACAACAAG+AGG | 0.578714 | 1.4:+53865970 | None:intergenic |
| GTGGACGAAGTTGACGATGT+CGG | 0.580395 | 1.4:+53866320 | None:intergenic |
| AGCTTACCCTGATGCCGAGA+AGG | 0.582607 | 1.4:-53865896 | MS.gene029880:CDS |
| GGTACCCCAGGACTCGGCGG+AGG | 0.582954 | 1.4:+53866236 | None:intergenic |
| CTTTACCAGGACGGATCCCA+AGG | 0.583493 | 1.4:+53865863 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1.4:-53865429 | MS.gene029880:CDS |
| GACGAGAGGACGAGCTGCGG+CGG | 0.586898 | 1.4:+53866428 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1.4:-53865425 | MS.gene029880:CDS |
| TCGGTACCATAAACAATCAA+AGG | 0.593031 | 1.4:+53865802 | None:intergenic |
| ATAACATTGAGATTCTTCAA+AGG | 0.595302 | 1.4:+53865466 | None:intergenic |
| TGAAAGGGTTAAGTCCAAGA+AGG | 0.600060 | 1.4:-53865386 | MS.gene029880:CDS |
| GCATGACATCAGGGATTGGG+AGG | 0.602783 | 1.4:+53866358 | None:intergenic |
| AAGGTAAAATGCGTAACCGT+AGG | 0.603588 | 1.4:-53865843 | MS.gene029880:CDS |
| TGTGAAGAAGGATGAGAAGA+GGG | 0.603591 | 1.4:-53865506 | MS.gene029880:CDS |
| GGAGGTGGTACCCACCGTGC+CGG | 0.603632 | 1.4:-53866180 | MS.gene029880:CDS |
| GTACCACCTCCGGCAACACG+AGG | 0.605092 | 1.4:+53866192 | None:intergenic |
| AATCTTCCTAAATGCCCACC+AGG | 0.605991 | 1.4:+53865694 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1.4:+53865979 | None:intergenic |
| CCACACCGTTGAAGGTGACA+TGG | 0.613167 | 1.4:-53866400 | MS.gene029880:CDS |
| GAAGGGTTATGTGCTTCCTA+GGG | 0.613508 | 1.4:-53865596 | MS.gene029880:CDS |
| CGAAAGCAGCTTGTCCGGCA+CGG | 0.614513 | 1.4:+53866166 | None:intergenic |
| CGAAGTTGACGATGTCGGGA+CGG | 0.617896 | 1.4:+53866325 | None:intergenic |
| TTGAGATCACCAATGTTGAA+AGG | 0.623070 | 1.4:-53865738 | MS.gene029880:CDS |
| AAGCCTTCGGAGAAGAAGAA+GGG | 0.625782 | 1.4:-53865613 | MS.gene029880:CDS |
| TCAAGGCTGCAGGAAAAGCA+TGG | 0.627406 | 1.4:-53864041 | MS.gene029880:CDS |
| TGGCTGCACGCATGACATCA+GGG | 0.628185 | 1.4:+53866349 | None:intergenic |
| CGTATCCCTCGTGTTGCCGG+AGG | 0.628937 | 1.4:-53866198 | MS.gene029880:CDS |
| CCACGAGCGAGAACAAGTGA+AGG | 0.635968 | 1.4:+53866021 | None:intergenic |
| CAAACCTCCGCCGAGTCCTG+GGG | 0.638408 | 1.4:-53866240 | MS.gene029880:CDS |
| CATGACATCAGGGATTGGGA+GGG | 0.640964 | 1.4:+53866359 | None:intergenic |
| CCATGTCACCTTCAACGGTG+TGG | 0.644494 | 1.4:+53866400 | None:intergenic |
| AAGCAGCTTGTCCGGCACGG+TGG | 0.654435 | 1.4:+53866169 | None:intergenic |
| AGTGACGAGAGGACGAGCTG+CGG | 0.658727 | 1.4:+53866425 | None:intergenic |
| TTCGGTAACATGTGTCGTGG+TGG | 0.660053 | 1.4:-53866147 | MS.gene029880:CDS |
| ACGGTGTGGACAGTGACGAG+AGG | 0.675130 | 1.4:+53866414 | None:intergenic |
| ACATTGGTGATCTCAACACC+AGG | 0.677167 | 1.4:+53865745 | None:intergenic |
| TCCGGTACCCCAGGACTCGG+CGG | 0.686621 | 1.4:+53866233 | None:intergenic |
| GCTTTCGGTAACATGTGTCG+TGG | 0.703272 | 1.4:-53866150 | MS.gene029880:CDS |
| CCTTACGAGAGATATACCTA+CGG | 0.703573 | 1.4:+53865827 | None:intergenic |
| TACCACCTCCGGCAACACGA+GGG | 0.703891 | 1.4:+53866193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAATGATATTACTAA+TGG | - | chr1.4:53865932-53865951 | MS.gene029880:CDS | 15.0% |
| !!! | TATCATTTTCAAATTCTAAA+GGG | + | chr1.4:53865366-53865385 | None:intergenic | 15.0% |
| !!! | TTATCATTTTCAAATTCTAA+AGG | + | chr1.4:53865367-53865386 | None:intergenic | 15.0% |
| !! | ACATGTATGTTAAATGTAAT+TGG | - | chr1.4:53866045-53866064 | MS.gene029880:CDS | 20.0% |
| !! | ACTAATTAACAACAATGTAA+TGG | + | chr1.4:53865126-53865145 | None:intergenic | 20.0% |
| !! | ATAATATTGTATGTTGGAAT+TGG | + | chr1.4:53865981-53866000 | None:intergenic | 20.0% |
| !! | ATTCCAACATACAATATTAT+AGG | - | chr1.4:53865981-53866000 | MS.gene029880:CDS | 20.0% |
| !! | ATTTGAGTGAAGATTTAATT+TGG | - | chr1.4:53865231-53865250 | MS.gene029880:intron | 20.0% |
| !! | TAACCTATAATATTGTATGT+TGG | + | chr1.4:53865987-53866006 | None:intergenic | 20.0% |
| !!! | TTCTAAAATGAAACTTAGAT+TGG | - | chr1.4:53865290-53865309 | MS.gene029880:intron | 20.0% |
| !!! | TTTGAAATATTGTTGATGTA+GGG | - | chr1.4:53865603-53865622 | MS.gene029880:CDS | 20.0% |
| !!! | TTTTGAAATATTGTTGATGT+AGG | - | chr1.4:53865602-53865621 | MS.gene029880:CDS | 20.0% |
| ! | ACAAAGATATTCAACTAACA+TGG | + | chr1.4:53866281-53866300 | None:intergenic | 25.0% |
| ! | ATAACATTGAGATTCTTCAA+AGG | + | chr1.4:53864938-53864957 | None:intergenic | 25.0% |
| ! | ATGATCCATAAAACAACAAA+AGG | + | chr1.4:53865583-53865602 | None:intergenic | 25.0% |
| ! | ATTTAGGAAGATTTGTGATT+TGG | - | chr1.4:53864717-53864736 | MS.gene029880:intron | 25.0% |
| ! | CTCAATTGACATATATACTA+GGG | + | chr1.4:53865545-53865564 | None:intergenic | 25.0% |
| ! | TCTCAATTGACATATATACT+AGG | + | chr1.4:53865546-53865565 | None:intergenic | 25.0% |
| ! | TTAGATTGGTAAGCAATAAT+AGG | - | chr1.4:53865304-53865323 | MS.gene029880:intron | 25.0% |
| ! | TTGAAATATTGTTGATGTAG+GGG | - | chr1.4:53865604-53865623 | MS.gene029880:CDS | 25.0% |
| !! | CTTTAAAAGAGTTCATCAAA+TGG | + | chr1.4:53865727-53865746 | None:intergenic | 25.0% |
| !! | TTTAGAATATCTATAACGTG+AGG | + | chr1.4:53865277-53865296 | None:intergenic | 25.0% |
| !!! | ATCAAGCTTTTGAAATCAAT+TGG | - | chr1.4:53864482-53864501 | MS.gene029880:intron | 25.0% |
| !!! | ATTCACCTTTTGTTGTTTTA+TGG | - | chr1.4:53865575-53865594 | MS.gene029880:CDS | 25.0% |
| !!! | TCTGATTCACATTGATTTTA+CGG | + | chr1.4:53864319-53864338 | None:intergenic | 25.0% |
| AAGATTCAACCTTTCAACAT+TGG | + | chr1.4:53864675-53864694 | None:intergenic | 30.0% | |
| ACAAGAGTGAATACACAAAT+TGG | + | chr1.4:53865668-53865687 | None:intergenic | 30.0% | |
| AGAATCTCAATGTTATGTTG+AGG | - | chr1.4:53864942-53864961 | MS.gene029880:intron | 30.0% | |
| ATCTCTCATTTCCAATATGA+TGG | - | chr1.4:53865457-53865476 | MS.gene029880:CDS | 30.0% | |
| CATGCTTGACATTATTAACT+TGG | - | chr1.4:53865424-53865443 | MS.gene029880:CDS | 30.0% | |
| CTTGTCAAAAGAACCATAAA+TGG | + | chr1.4:53864771-53864790 | None:intergenic | 30.0% | |
| GAGGACTAAAACAAATTCAA+GGG | + | chr1.4:53865258-53865277 | None:intergenic | 30.0% | |
| GGACTATAATGACAACAAAT+TGG | + | chr1.4:53865524-53865543 | None:intergenic | 30.0% | |
| TAATGTCAATGCCATCATAT+TGG | + | chr1.4:53865471-53865490 | None:intergenic | 30.0% | |
| TGAGGACTAAAACAAATTCA+AGG | + | chr1.4:53865259-53865278 | None:intergenic | 30.0% | |
| ! | AAAAGCATGGTACAATACTA+TGG | - | chr1.4:53866373-53866392 | MS.gene029880:CDS | 30.0% |
| ! | AAGAGTTCATCAAATGGATT+TGG | + | chr1.4:53865721-53865740 | None:intergenic | 30.0% |
| ! | AGAGTTCATCAAATGGATTT+GGG | + | chr1.4:53865720-53865739 | None:intergenic | 30.0% |
| ! | GAAATGTATTTGAAACCAAG+TGG | + | chr1.4:53865495-53865514 | None:intergenic | 30.0% |
| !!! | ATAGAGACTGATTTGCTTTT+TGG | - | chr1.4:53865894-53865913 | MS.gene029880:CDS | 30.0% |
| !!! | TCATTTTTAGTGTTACTTGC+AGG | - | chr1.4:53865754-53865773 | MS.gene029880:CDS | 30.0% |
| !!! | TTTTTGCTGTTTGTCTACTT+TGG | - | chr1.4:53866248-53866267 | MS.gene029880:CDS | 30.0% |
| AACAGCAAAAACATGCATCA+AGG | + | chr1.4:53866239-53866258 | None:intergenic | 35.0% | |
| AAGGGTCCTTTGATTGTTTA+TGG | - | chr1.4:53864593-53864612 | MS.gene029880:intron | 35.0% | |
| AATTCGACAACTTCTCCAAA+TGG | - | chr1.4:53866417-53866436 | MS.gene029880:CDS | 35.0% | |
| ACAGCAAAAACATGCATCAA+GGG | + | chr1.4:53866238-53866257 | None:intergenic | 35.0% | |
| ACTTGCAGGTTTAGATTGAT+TGG | - | chr1.4:53865768-53865787 | MS.gene029880:CDS | 35.0% | |
| AGGAAAAGCTTGATAAGAAG+AGG | - | chr1.4:53865035-53865054 | MS.gene029880:intron | 35.0% | |
| CAAAGGATTCTTCTTCAAAG+TGG | + | chr1.4:53864921-53864940 | None:intergenic | 35.0% | |
| CAACCATGTATGAAGATGAA+TGG | - | chr1.4:53866185-53866204 | MS.gene029880:CDS | 35.0% | |
| CAACCATTCATCTTCATACA+TGG | + | chr1.4:53866191-53866210 | None:intergenic | 35.0% | |
| GAGAAGTTGGATTCCATTTA+TGG | - | chr1.4:53864755-53864774 | MS.gene029880:intron | 35.0% | |
| TCGGTACCATAAACAATCAA+AGG | + | chr1.4:53864602-53864621 | None:intergenic | 35.0% | |
| TTGAGATCACCAATGTTGAA+AGG | - | chr1.4:53864663-53864682 | MS.gene029880:intron | 35.0% | |
| ! | AAAGCTTTTCGCAATATTCC+TGG | - | chr1.4:53864638-53864657 | MS.gene029880:intron | 35.0% |
| ! | CTTATCAAGCTTTTCCTTCT+TGG | + | chr1.4:53865032-53865051 | None:intergenic | 35.0% |
| ! | TGGTGAATTCTGATTTGACT+AGG | - | chr1.4:53864834-53864853 | MS.gene029880:intron | 35.0% |
| ! | TTACGCATTTTACCTTTACC+AGG | + | chr1.4:53864554-53864573 | None:intergenic | 35.0% |
| ! | TTGATTGTTTATGGTACCGA+AGG | - | chr1.4:53864602-53864621 | MS.gene029880:intron | 35.0% |
| !! | ATGAGATTCAGAGTGTTGTT+AGG | - | chr1.4:53864870-53864889 | MS.gene029880:intron | 35.0% |
| !! | TAAGACTGCTTTTGAGAAGT+TGG | - | chr1.4:53864742-53864761 | MS.gene029880:intron | 35.0% |
| AAGGTAAAATGCGTAACCGT+AGG | - | chr1.4:53864558-53864577 | MS.gene029880:intron | 40.0% | |
| ATAGGCTATGTTGCTCTGTA+AGG | - | chr1.4:53865322-53865341 | MS.gene029880:intron | 40.0% | |
| CCTTACGAGAGATATACCTA+CGG | + | chr1.4:53864577-53864596 | None:intergenic | 40.0% | |
| CGTAGGTATATCTCTCGTAA+GGG | - | chr1.4:53864575-53864594 | MS.gene029880:intron | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | + | chr1.4:53864974-53864993 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | - | chr1.4:53864972-53864991 | MS.gene029880:intron | 40.0% | |
| GACAACTTCTCCAAATGGTT+GGG | - | chr1.4:53866422-53866441 | MS.gene029880:CDS | 40.0% | |
| GACCTGAAACTTGAAATTGC+AGG | + | chr1.4:53865646-53865665 | None:intergenic | 40.0% | |
| TGAAAGGGTTAAGTCCAAGA+AGG | - | chr1.4:53865015-53865034 | MS.gene029880:intron | 40.0% | |
| TGTGAAGAAGGATGAGAAGA+GGG | - | chr1.4:53864895-53864914 | MS.gene029880:intron | 40.0% | |
| ! | ATCAAATGGATTTGGGTCAC+TGG | + | chr1.4:53865713-53865732 | None:intergenic | 40.0% |
| ! | GCATTTTACCTTTACCAGGA+CGG | + | chr1.4:53864550-53864569 | None:intergenic | 40.0% |
| ! | TGGTTCTTTTGACAAGCCTT+CGG | - | chr1.4:53864775-53864794 | MS.gene029880:intron | 40.0% |
| ! | TTTGCTTGCTGAAGCTGAAA+GGG | - | chr1.4:53865000-53865019 | MS.gene029880:intron | 40.0% |
| !! | CGTTTTTGGAGATATTGGAG+TGG | + | chr1.4:53864103-53864122 | None:intergenic | 40.0% |
| !! | GTCCTGCAATTTCAAGTTTC+AGG | - | chr1.4:53865641-53865660 | MS.gene029880:CDS | 40.0% |
| !! | TGAAGGTGTTGAGAAGACTA+AGG | - | chr1.4:53864454-53864473 | MS.gene029880:intron | 40.0% |
| !! | TGGCATTGACATTATCCACT+TGG | - | chr1.4:53865477-53865496 | MS.gene029880:CDS | 40.0% |
| !!! | AATCTTTTGAAGCTTGCACC+TGG | - | chr1.4:53864689-53864708 | MS.gene029880:intron | 40.0% |
| AAGCCTTCGGAGAAGAAGAA+GGG | - | chr1.4:53864788-53864807 | MS.gene029880:intron | 45.0% | |
| AATCTTCCTAAATGCCCACC+AGG | + | chr1.4:53864710-53864729 | None:intergenic | 45.0% | |
| AATTACCCCTGTTCATTCCC+AGG | - | chr1.4:53866322-53866341 | MS.gene029880:CDS | 45.0% | |
| ACTCAGGAACAGTTTCGATC+CGG | + | chr1.4:53864409-53864428 | None:intergenic | 45.0% | |
| AGAAGGGTTATGTGCTTCCT+AGG | - | chr1.4:53864804-53864823 | MS.gene029880:intron | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | + | chr1.4:53864425-53864444 | None:intergenic | 45.0% | |
| CCGTAGGTATATCTCTCGTA+AGG | - | chr1.4:53864574-53864593 | MS.gene029880:intron | 45.0% | |
| CGACAACTTCTCCAAATGGT+TGG | - | chr1.4:53866421-53866440 | MS.gene029880:CDS | 45.0% | |
| CTCTTCTCATCCTTCTTCAC+AGG | + | chr1.4:53864896-53864915 | None:intergenic | 45.0% | |
| CTGTGAAGAAGGATGAGAAG+AGG | - | chr1.4:53864894-53864913 | MS.gene029880:intron | 45.0% | |
| CTTCTTCCTGGGAATGAACA+GGG | + | chr1.4:53866331-53866350 | None:intergenic | 45.0% | |
| GAAGAGGAAGACTGTCTCTA+AGG | - | chr1.4:53865051-53865070 | MS.gene029880:intron | 45.0% | |
| GAAGGGTTATGTGCTTCCTA+GGG | - | chr1.4:53864805-53864824 | MS.gene029880:intron | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | + | chr1.4:53864824-53864843 | None:intergenic | 45.0% | |
| GATAGCAGTAGCTTCTTCCT+GGG | + | chr1.4:53866342-53866361 | None:intergenic | 45.0% | |
| GCAAAAACATGCATCAAGGG+AGG | + | chr1.4:53866235-53866254 | None:intergenic | 45.0% | |
| GCAGAATCACCAACAACAAG+AGG | + | chr1.4:53864434-53864453 | None:intergenic | 45.0% | |
| GGAAGAAGCTACTGCTATCA+AGG | - | chr1.4:53866343-53866362 | MS.gene029880:CDS | 45.0% | |
| TAACCCTTCTTCTTCTCCGA+AGG | + | chr1.4:53864794-53864813 | None:intergenic | 45.0% | |
| TGATAGCAGTAGCTTCTTCC+TGG | + | chr1.4:53866343-53866362 | None:intergenic | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | - | chr1.4:53864976-53864995 | MS.gene029880:intron | 45.0% | |
| TGTTGTTAGGCCTGTGAAGA+AGG | - | chr1.4:53864883-53864902 | MS.gene029880:intron | 45.0% | |
| TTCTTCCTGGGAATGAACAG+GGG | + | chr1.4:53866330-53866349 | None:intergenic | 45.0% | |
| TTGTGAGACACCCAACCATT+TGG | + | chr1.4:53866435-53866454 | None:intergenic | 45.0% | |
| TTTCACTGCTTTCGCTCCTT+CGG | + | chr1.4:53864621-53864640 | None:intergenic | 45.0% | |
| ! | ACATTGGTGATCTCAACACC+AGG | + | chr1.4:53864659-53864678 | None:intergenic | 45.0% |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | - | chr1.4:53864422-53864441 | MS.gene029880:intron | 45.0% |
| ! | CTTTGCTTGCTGAAGCTGAA+AGG | - | chr1.4:53864999-53865018 | MS.gene029880:intron | 45.0% |
| !! | GTTGTTGGTGATTCTGCTGA+AGG | - | chr1.4:53864437-53864456 | MS.gene029880:intron | 45.0% |
| !!! | TTTTGAAGCTTGCACCTGGT+GGG | - | chr1.4:53864693-53864712 | MS.gene029880:intron | 45.0% |
| AAGGCTATCCTTCGCCTTCT+CGG | + | chr1.4:53864522-53864541 | None:intergenic | 50.0% | |
| AGAAGGCGAAGGATAGCCTT+GGG | - | chr1.4:53864522-53864541 | MS.gene029880:intron | 50.0% | |
| AGTGGCCATGTCACCTTCAA+CGG | + | chr1.4:53864009-53864028 | None:intergenic | 50.0% | |
| CAAGCCTTCGGAGAAGAAGA+AGG | - | chr1.4:53864787-53864806 | MS.gene029880:intron | 50.0% | |
| CACGCATGACATCAGGGATT+GGG | + | chr1.4:53864049-53864068 | None:intergenic | 50.0% | |
| CATGACATCAGGGATTGGGA+GGG | + | chr1.4:53864045-53864064 | None:intergenic | 50.0% | |
| GCTTCTTCCTGGGAATGAAC+AGG | + | chr1.4:53866332-53866351 | None:intergenic | 50.0% | |
| GCTTTCGGTAACATGTGTCG+TGG | - | chr1.4:53864251-53864270 | MS.gene029880:intron | 50.0% | |
| GTGGACGAAGTTGACGATGT+CGG | + | chr1.4:53864084-53864103 | None:intergenic | 50.0% | |
| GTTACCGAAAGCAGCTTGTC+CGG | + | chr1.4:53864243-53864262 | None:intergenic | 50.0% | |
| TCAAGGCTGCAGGAAAAGCA+TGG | - | chr1.4:53866360-53866379 | MS.gene029880:CDS | 50.0% | |
| TGGACGAAGTTGACGATGTC+GGG | + | chr1.4:53864083-53864102 | None:intergenic | 50.0% | |
| TGTGCTTCCTAGGGCTAAGA+TGG | - | chr1.4:53864814-53864833 | MS.gene029880:intron | 50.0% | |
| TTCGGTAACATGTGTCGTGG+TGG | - | chr1.4:53864254-53864273 | MS.gene029880:intron | 50.0% | |
| !! | GCGGGCGTTTTTGGAGATAT+TGG | + | chr1.4:53864108-53864127 | None:intergenic | 50.0% |
| !!! | CTTTTGAAGCTTGCACCTGG+TGG | - | chr1.4:53864692-53864711 | MS.gene029880:intron | 50.0% |
| AAGGGAGGAAGCAGCACACA+TGG | + | chr1.4:53866220-53866239 | None:intergenic | 55.0% | |
| AGCTTACCCTGATGCCGAGA+AGG | - | chr1.4:53864505-53864524 | MS.gene029880:intron | 55.0% | |
| ATGGCTGCACGCATGACATC+AGG | + | chr1.4:53864056-53864075 | None:intergenic | 55.0% | |
| CAACCCGGATCTGGCGTAAA+TGG | - | chr1.4:53864291-53864310 | MS.gene029880:intron | 55.0% | |
| CATTTACGCCAGATCCGGGT+TGG | + | chr1.4:53864293-53864312 | None:intergenic | 55.0% | |
| CCACACCGTTGAAGGTGACA+TGG | - | chr1.4:53864001-53864020 | MS.gene029880:CDS | 55.0% | |
| CCACGAGCGAGAACAAGTGA+AGG | + | chr1.4:53864383-53864402 | None:intergenic | 55.0% | |
| CCATGTCACCTTCAACGGTG+TGG | + | chr1.4:53864004-53864023 | None:intergenic | 55.0% | |
| CCTTCACTTGTTCTCGCTCG+TGG | - | chr1.4:53864380-53864399 | MS.gene029880:intron | 55.0% | |
| CGAAGTTGACGATGTCGGGA+CGG | + | chr1.4:53864079-53864098 | None:intergenic | 55.0% | |
| CTTGGGATCCGTCCTGGTAA+AGG | - | chr1.4:53864539-53864558 | MS.gene029880:intron | 55.0% | |
| CTTTACCAGGACGGATCCCA+AGG | + | chr1.4:53864541-53864560 | None:intergenic | 55.0% | |
| GAGAAGGCGAAGGATAGCCT+TGG | - | chr1.4:53864521-53864540 | MS.gene029880:intron | 55.0% | |
| GCACGCATGACATCAGGGAT+TGG | + | chr1.4:53864050-53864069 | None:intergenic | 55.0% | |
| GCATGACATCAGGGATTGGG+AGG | + | chr1.4:53864046-53864065 | None:intergenic | 55.0% | |
| GCTACTGCTATCAAGGCTGC+AGG | - | chr1.4:53866350-53866369 | MS.gene029880:CDS | 55.0% | |
| GTCACTGTCCACACCGTTGA+AGG | - | chr1.4:53863993-53864012 | MS.gene029880:CDS | 55.0% | |
| GTCGCATGTTTGCTCCAACC+CGG | - | chr1.4:53864276-53864295 | MS.gene029880:intron | 55.0% | |
| TGGCTGCACGCATGACATCA+GGG | + | chr1.4:53864055-53864074 | None:intergenic | 55.0% | |
| TGTTTGCTCCAACCCGGATC+TGG | - | chr1.4:53864282-53864301 | MS.gene029880:intron | 55.0% | |
| TTGTTCTCGCTCGTGGTCAC+CGG | - | chr1.4:53864387-53864406 | MS.gene029880:intron | 55.0% | |
| ! | CTTGCACCTGGTGGGCATTT+AGG | - | chr1.4:53864701-53864720 | MS.gene029880:intron | 55.0% |
| !! | AGGTTTGGTGACCGGCTTTG+CGG | + | chr1.4:53864148-53864167 | None:intergenic | 55.0% |
| !! | GGTGCCATTTACGCCAGATC+CGG | + | chr1.4:53864298-53864317 | None:intergenic | 55.0% |
| !! | GTATGGTTGGCGGGCGTTTT+TGG | + | chr1.4:53864117-53864136 | None:intergenic | 55.0% |
| !! | GTGCCATTTACGCCAGATCC+GGG | + | chr1.4:53864297-53864316 | None:intergenic | 55.0% |
| ACGGTGTGGACAGTGACGAG+AGG | + | chr1.4:53863990-53864009 | None:intergenic | 60.0% | |
| AGTGACGAGAGGACGAGCTG+CGG | + | chr1.4:53863979-53863998 | None:intergenic | 60.0% | |
| ATCAGGGATTGGGAGGGAGG+TGG | + | chr1.4:53864039-53864058 | None:intergenic | 60.0% | |
| CCTTCGCCTTCTCGGCATCA+GGG | + | chr1.4:53864514-53864533 | None:intergenic | 60.0% | |
| CGAAAGCAGCTTGTCCGGCA+CGG | + | chr1.4:53864238-53864257 | None:intergenic | 60.0% | |
| CTCCGGCAACACGAGGGATA+CGG | + | chr1.4:53864205-53864224 | None:intergenic | 60.0% | |
| GACATCAGGGATTGGGAGGG+AGG | + | chr1.4:53864042-53864061 | None:intergenic | 60.0% | |
| GATACGGGAGACAGCACGTC+CGG | + | chr1.4:53864189-53864208 | None:intergenic | 60.0% | |
| GTTGACGATGTCGGGACGGA+TGG | + | chr1.4:53864075-53864094 | None:intergenic | 60.0% | |
| TACCACCTCCGGCAACACGA+GGG | + | chr1.4:53864211-53864230 | None:intergenic | 60.0% | |
| TCAGGGATTGGGAGGGAGGT+GGG | + | chr1.4:53864038-53864057 | None:intergenic | 60.0% | |
| TCCCGTATCCCTCGTGTTGC+CGG | - | chr1.4:53864200-53864219 | MS.gene029880:intron | 60.0% | |
| TCCGGCAACACGAGGGATAC+GGG | + | chr1.4:53864204-53864223 | None:intergenic | 60.0% | |
| TCCTTCGCCTTCTCGGCATC+AGG | + | chr1.4:53864515-53864534 | None:intergenic | 60.0% | |
| ! | CGTGCCGGACAAGCTGCTTT+CGG | - | chr1.4:53864236-53864255 | MS.gene029880:intron | 60.0% |
| ! | GATAGCCTTGGGATCCGTCC+TGG | - | chr1.4:53864533-53864552 | MS.gene029880:intron | 60.0% |
| AAGCAGCTTGTCCGGCACGG+TGG | + | chr1.4:53864235-53864254 | None:intergenic | 65.0% | |
| ACCAAACCTCCGCCGAGTCC+TGG | - | chr1.4:53864159-53864178 | MS.gene029880:intron | 65.0% | |
| ACGTCCGGTACCCCAGGACT+CGG | + | chr1.4:53864174-53864193 | None:intergenic | 65.0% | |
| AGCAGCTTGTCCGGCACGGT+GGG | + | chr1.4:53864234-53864253 | None:intergenic | 65.0% | |
| ATCCCTCGTGTTGCCGGAGG+TGG | - | chr1.4:53864206-53864225 | MS.gene029880:intron | 65.0% | |
| CAAACCTCCGCCGAGTCCTG+GGG | - | chr1.4:53864161-53864180 | MS.gene029880:intron | 65.0% | |
| CCAAACCTCCGCCGAGTCCT+GGG | - | chr1.4:53864160-53864179 | MS.gene029880:intron | 65.0% | |
| CCCTGATGCCGAGAAGGCGA+AGG | - | chr1.4:53864511-53864530 | MS.gene029880:intron | 65.0% | |
| CGTATCCCTCGTGTTGCCGG+AGG | - | chr1.4:53864203-53864222 | MS.gene029880:intron | 65.0% | |
| GCTGACGGCGTATGGTTGGC+GGG | + | chr1.4:53864126-53864145 | None:intergenic | 65.0% | |
| GCTTTGCGGCTGACGGCGTA+TGG | + | chr1.4:53864134-53864153 | None:intergenic | 65.0% | |
| GGCTGACGGCGTATGGTTGG+CGG | + | chr1.4:53864127-53864146 | None:intergenic | 65.0% | |
| GTACCACCTCCGGCAACACG+AGG | + | chr1.4:53864212-53864231 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGCAAAGC+CGG | - | chr1.4:53864134-53864153 | MS.gene029880:intron | 65.0% | |
| TGCGGCTGACGGCGTATGGT+TGG | + | chr1.4:53864130-53864149 | None:intergenic | 65.0% | |
| ! | GTGACCGGCTTTGCGGCTGA+CGG | + | chr1.4:53864141-53864160 | None:intergenic | 65.0% |
| !! | CTCGGCGGAGGTTTGGTGAC+CGG | + | chr1.4:53864156-53864175 | None:intergenic | 65.0% |
| !! | GAGGGAGGTGGGAGTGTCAG+TGG | + | chr1.4:53864027-53864046 | None:intergenic | 65.0% |
| CCCAGGACTCGGCGGAGGTT+TGG | + | chr1.4:53864163-53864182 | None:intergenic | 70.0% | |
| GACAGCACGTCCGGTACCCC+AGG | + | chr1.4:53864180-53864199 | None:intergenic | 70.0% | |
| GACGAGAGGACGAGCTGCGG+CGG | + | chr1.4:53863976-53863995 | None:intergenic | 70.0% | |
| GGAGGTGGTACCCACCGTGC+CGG | - | chr1.4:53864221-53864240 | MS.gene029880:intron | 70.0% | |
| GGCACGGTGGGTACCACCTC+CGG | + | chr1.4:53864222-53864241 | None:intergenic | 70.0% | |
| TCCGCCGAGTCCTGGGGTAC+CGG | - | chr1.4:53864167-53864186 | MS.gene029880:intron | 70.0% | |
| TCCGGTACCCCAGGACTCGG+CGG | + | chr1.4:53864171-53864190 | None:intergenic | 70.0% | |
| GAGAGGACGAGCTGCGGCGG+CGG | + | chr1.4:53863973-53863992 | None:intergenic | 75.0% | |
| GGTACCCCAGGACTCGGCGG+AGG | + | chr1.4:53864168-53864187 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53863966 | 53866457 | 53863966 | ID=MS.gene029880 |
| chr1.4 | mRNA | 53863966 | 53866457 | 53863966 | ID=MS.gene029880.t1;Parent=MS.gene029880 |
| chr1.4 | exon | 53865351 | 53866457 | 53865351 | ID=MS.gene029880.t1.exon1;Parent=MS.gene029880.t1 |
| chr1.4 | CDS | 53865351 | 53866457 | 53865351 | ID=cds.MS.gene029880.t1;Parent=MS.gene029880.t1 |
| chr1.4 | exon | 53863966 | 53864079 | 53863966 | ID=MS.gene029880.t1.exon2;Parent=MS.gene029880.t1 |
| chr1.4 | CDS | 53863966 | 53864079 | 53863966 | ID=cds.MS.gene029880.t1;Parent=MS.gene029880.t1 |
| Gene Sequence |
| Protein sequence |
