Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053467.t1 | RHN78676.1 | 99 | 406 | 4 | 0 | 1 | 406 | 46 | 451 | 3.20E-219 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053467.t1 | Q9SF40 | 82.5 | 406 | 71 | 0 | 1 | 406 | 1 | 406 | 1.1e-191 | 670.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053467.t1 | G7I6N5 | 99.0 | 406 | 4 | 0 | 1 | 406 | 1 | 406 | 2.3e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053467 | MS.gene30990 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene053467 | MS.gene62620 | 0.877416 | 6.40E-69 | -1.69E-46 |
| MS.gene053467 | MS.gene79721 | 0.812753 | 3.62E-51 | -1.69E-46 |
| MS.gene053467 | MS.gene92142 | 0.803243 | 3.83E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053467.t1 | MTR_1g045410 | 99.015 | 406 | 4 | 0 | 1 | 406 | 1 | 406 | 0.0 | 821 |
| MS.gene053467.t1 | MTR_5g025120 | 95.250 | 400 | 19 | 0 | 7 | 406 | 9 | 408 | 0.0 | 743 |
| MS.gene053467.t1 | MTR_1g066990 | 93.812 | 404 | 25 | 0 | 3 | 406 | 2 | 405 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053467.t1 | AT3G09630 | 82.512 | 406 | 71 | 0 | 1 | 406 | 1 | 406 | 0.0 | 692 |
| MS.gene053467.t1 | AT3G09630 | 82.266 | 406 | 71 | 1 | 1 | 406 | 1 | 405 | 0.0 | 685 |
| MS.gene053467.t1 | AT5G02870 | 82.266 | 406 | 72 | 0 | 1 | 406 | 2 | 407 | 0.0 | 683 |
| MS.gene053467.t1 | AT5G02870 | 82.020 | 406 | 72 | 1 | 1 | 406 | 2 | 406 | 0.0 | 677 |
Find 128 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGACCGTTGATTGTTTA+TGG | 0.167677 | 1.4:+29576535 | MS.gene053467:CDS |
| GTGCCATTTCCGCCAGATTC+TGG | 0.266714 | 1.4:-29576236 | None:intergenic |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1.4:+29576364 | MS.gene053467:CDS |
| GAGAAACTTGATTCGATTTA+CGG | 0.289997 | 1.4:+29576697 | MS.gene053467:CDS |
| CCCATGATTCGGCGGAGGTT+TGG | 0.299282 | 1.4:-29576102 | None:intergenic |
| CTTGCACCTGGTGGGCATTT+GGG | 0.316137 | 1.4:+29576643 | MS.gene053467:CDS |
| CGACCAGAATCTGGCGGAAA+TGG | 0.317222 | 1.4:+29576233 | MS.gene053467:CDS |
| TTGTTCTTGCTCGTGGTCAT+AGG | 0.318133 | 1.4:+29576329 | MS.gene053467:CDS |
| CGCTTAACATCCTTCTTAAT+CGG | 0.329357 | 1.4:-29576835 | None:intergenic |
| ACTTGCACCTGGTGGGCATT+TGG | 0.330852 | 1.4:+29576642 | MS.gene053467:CDS |
| GGAGGAAGCTTCTGCCATTA+AGG | 0.333983 | 1.4:+29578418 | MS.gene053467:intron |
| ATGGACGAAGTTGACGATAT+CGG | 0.334336 | 1.4:-29576023 | None:intergenic |
| AGGTTTGGTGGCCGGCTTTA+CGG | 0.335499 | 1.4:-29576087 | None:intergenic |
| ATTCCTCGCGTTGCCGGAGG+TGG | 0.358283 | 1.4:+29576148 | MS.gene053467:CDS |
| TCCCGTATTCCTCGCGTTGC+CGG | 0.365956 | 1.4:+29576142 | MS.gene053467:CDS |
| GAAGCGTTTCGCGGTTGTTT+CGG | 0.366018 | 1.4:+29576279 | MS.gene053467:CDS |
| CGTGCTGGTCAAGCTGCTTT+CGG | 0.369434 | 1.4:+29576178 | MS.gene053467:CDS |
| CTCTTAGCAGTCTTGGCATA+AGG | 0.381657 | 1.4:-29576913 | None:intergenic |
| GAAGAGGAAGACTGTTTCTA+AGG | 0.381777 | 1.4:+29576993 | MS.gene053467:CDS |
| ACCAAACCTCCGCCGAATCA+TGG | 0.382546 | 1.4:+29576101 | MS.gene053467:CDS |
| ATTTGGGTAGGTTTGTTGTT+TGG | 0.382908 | 1.4:+29576659 | MS.gene053467:CDS |
| AGAAACTTGATTCGATTTAC+GGG | 0.384012 | 1.4:+29576698 | MS.gene053467:CDS |
| GACGAGGGGTCTTGCGGCGG+CGG | 0.388200 | 1.4:-29575915 | None:intergenic |
| GTTTGTTGTTTGGACTAAAT+CGG | 0.397101 | 1.4:+29576669 | MS.gene053467:CDS |
| CTCCGGCAACGCGAGGAATA+CGG | 0.402307 | 1.4:-29576144 | None:intergenic |
| TGGACGAAGTTGACGATATC+GGG | 0.408679 | 1.4:-29576022 | None:intergenic |
| GGCTGACGGCGTACGGTTGT+CGG | 0.414221 | 1.4:-29576066 | None:intergenic |
| TTTGACTGCTTTCGCACCTT+CGG | 0.414393 | 1.4:-29576560 | None:intergenic |
| AGCACGGTGGGTCCCACCTC+CGG | 0.414888 | 1.4:-29576161 | None:intergenic |
| CCATGTCGGAATCGAGTGTT+TGG | 0.423753 | 1.4:-29575943 | None:intergenic |
| TGTTTGCTCCGACCAGAATC+TGG | 0.425464 | 1.4:+29576224 | MS.gene053467:CDS |
| GACAACTTCTCCAAGTGGTT+GGG | 0.425629 | 1.4:+29578497 | MS.gene053467:CDS |
| CCAAACCTCCGCCGAATCAT+GGG | 0.425976 | 1.4:+29576102 | MS.gene053467:CDS |
| CTCGCATTACATCGGGGATT+GGG | 0.426793 | 1.4:-29575988 | None:intergenic |
| ATAACATTAAGATTCTTAAG+AGG | 0.432087 | 1.4:-29576877 | None:intergenic |
| TTCGGCGGAGGTTTGGTGGC+CGG | 0.440902 | 1.4:-29576095 | None:intergenic |
| GCTCGCATTACATCGGGGAT+TGG | 0.441511 | 1.4:-29575989 | None:intergenic |
| TGCTGAGGCTGAGAGGGTTA+AGG | 0.451803 | 1.4:+29576948 | MS.gene053467:CDS |
| AAGGGTAGTGAGAAGAAGAA+AGG | 0.452915 | 1.4:+29576730 | MS.gene053467:CDS |
| GCTGACGGCGTACGGTTGTC+GGG | 0.457389 | 1.4:-29576065 | None:intergenic |
| ATTGAAGCTCGCATTACATC+GGG | 0.459128 | 1.4:-29575995 | None:intergenic |
| GAGAAAGCGAAAGCGAGTCT+TGG | 0.467857 | 1.4:+29576463 | MS.gene053467:CDS |
| AGAAAGCGAAAGCGAGTCTT+GGG | 0.468700 | 1.4:+29576464 | MS.gene053467:CDS |
| AGCCATCCTCTTAGCAGTCT+TGG | 0.471110 | 1.4:-29576920 | None:intergenic |
| TGTGAATCAGAAGCGTTTCG+CGG | 0.476732 | 1.4:+29576270 | MS.gene053467:CDS |
| TGGGAGGGAGGTTGATGAAT+CGG | 0.479053 | 1.4:-29575969 | None:intergenic |
| CACCTGGTGGGCATTTGGGT+AGG | 0.482518 | 1.4:+29576647 | MS.gene053467:CDS |
| TCCGGCAACGCGAGGAATAC+GGG | 0.484871 | 1.4:-29576143 | None:intergenic |
| CCTTCGCTTGTTCTTGCTCG+TGG | 0.487815 | 1.4:+29576322 | MS.gene053467:CDS |
| GCTTCTGCCATTAAGGCAGC+TGG | 0.495195 | 1.4:+29578425 | MS.gene053467:CDS |
| GCTTTACGGCTGACGGCGTA+CGG | 0.496325 | 1.4:-29576073 | None:intergenic |
| TGAGAGGGTTAAGGCTAAGA+AGG | 0.498124 | 1.4:+29576957 | MS.gene053467:CDS |
| TGACAACTTCTCCAAGTGGT+TGG | 0.498943 | 1.4:+29578496 | MS.gene053467:CDS |
| ATGATTCGGCGGAGGTTTGG+TGG | 0.502166 | 1.4:-29576099 | None:intergenic |
| TCCGCCGAATCATGGGGAAC+CGG | 0.504789 | 1.4:+29576109 | MS.gene053467:CDS |
| AGGGTAGTGAGAAGAAGAAA+GGG | 0.506735 | 1.4:+29576731 | MS.gene053467:CDS |
| CTTTGCTTGCTGAGGCTGAG+AGG | 0.509740 | 1.4:+29576941 | MS.gene053467:CDS |
| GTTGTTGGTGATTCAGCTGA+AGG | 0.512405 | 1.4:+29576379 | MS.gene053467:CDS |
| AAAAGCTTGGTACAACACTA+TGG | 0.513409 | 1.4:+29578448 | MS.gene053467:CDS |
| TTTGCTTGCTGAGGCTGAGA+GGG | 0.515410 | 1.4:+29576942 | MS.gene053467:CDS |
| GGAGGTGGGACCCACCGTGC+TGG | 0.518181 | 1.4:+29576163 | MS.gene053467:CDS |
| TACATCGGGGATTGGGAGGG+AGG | 0.520984 | 1.4:-29575981 | None:intergenic |
| GAGGATGGCTTTGCTTGCTG+AGG | 0.523283 | 1.4:+29576933 | MS.gene053467:CDS |
| GACGGTGACGAGGGGTCTTG+CGG | 0.525418 | 1.4:-29575921 | None:intergenic |
| ACGACCGGTTCCCCATGATT+CGG | 0.529401 | 1.4:-29576113 | None:intergenic |
| GATTGAAGCTCGCATTACAT+CGG | 0.530724 | 1.4:-29575996 | None:intergenic |
| CGTAGGTATATATCGCGAAA+AGG | 0.530754 | 1.4:+29576517 | MS.gene053467:CDS |
| AGCGAGTCTTGGGATTCGAC+CGG | 0.531495 | 1.4:+29576474 | MS.gene053467:CDS |
| AACCTACCCAAATGCCCACC+AGG | 0.531845 | 1.4:-29576649 | None:intergenic |
| TGTTGTGAGGCCGATTAAGA+AGG | 0.535007 | 1.4:+29576825 | MS.gene053467:CDS |
| TACGCCGTCAGCCGTAAAGC+CGG | 0.535611 | 1.4:+29576076 | MS.gene053467:CDS |
| GTCGGAATCGAGTGTTTGGA+CGG | 0.536209 | 1.4:-29575939 | None:intergenic |
| AGGAGAAGCTTGATAAGAAG+AGG | 0.538354 | 1.4:+29576977 | MS.gene053467:CDS |
| CGAGTGTTTGGACGGTGACG+AGG | 0.540616 | 1.4:-29575931 | None:intergenic |
| GCGAGTCTTGGGATTCGACC+GGG | 0.544565 | 1.4:+29576475 | MS.gene053467:CDS |
| TGAAGGAGTAGAGAAAACTA+AGG | 0.551422 | 1.4:+29576396 | MS.gene053467:CDS |
| TGGTTAATTCAGATTTGACT+AGG | 0.553845 | 1.4:+29576776 | MS.gene053467:CDS |
| AATACGGGAGACGGCACGAC+CGG | 0.553939 | 1.4:-29576128 | None:intergenic |
| TTAAGGCAGCTGGAAAAGCT+TGG | 0.555525 | 1.4:+29578435 | MS.gene053467:CDS |
| CTTGGGATTCGACCGGGGAA+AGG | 0.556923 | 1.4:+29576481 | MS.gene053467:CDS |
| AGCAGCTTGACCAGCACGGT+GGG | 0.557276 | 1.4:-29576173 | None:intergenic |
| TTCCTCGCGTTGCCGGAGGT+GGG | 0.558540 | 1.4:+29576149 | MS.gene053467:CDS |
| CTGTGAAACACCCAACCACT+TGG | 0.559270 | 1.4:-29578507 | None:intergenic |
| GAATCTGGCGGAAATGGCAC+CGG | 0.559782 | 1.4:+29576239 | MS.gene053467:CDS |
| GCATTACATCGGGGATTGGG+AGG | 0.561317 | 1.4:-29575985 | None:intergenic |
| TTGATTGTTTATGGCACCGA+AGG | 0.563227 | 1.4:+29576544 | MS.gene053467:CDS |
| CTTATGCCAAGACTGCTAAG+AGG | 0.565343 | 1.4:+29576914 | MS.gene053467:CDS |
| GAATTAACCATCTTAGCCCT+AGG | 0.567623 | 1.4:-29576763 | None:intergenic |
| TGATGAATCGGTGGCCATGT+CGG | 0.570494 | 1.4:-29575957 | None:intergenic |
| TTACGCATCTTACCTTTCCC+CGG | 0.571177 | 1.4:-29576493 | None:intergenic |
| CATTACATCGGGGATTGGGA+GGG | 0.572721 | 1.4:-29575984 | None:intergenic |
| AACGCGAGGAATACGGGAGA+CGG | 0.573162 | 1.4:-29576137 | None:intergenic |
| GTGGCCGGCTTTACGGCTGA+CGG | 0.574691 | 1.4:-29576080 | None:intergenic |
| TTGGTACAACACTATGGTCT+CGG | 0.586235 | 1.4:+29578454 | MS.gene053467:CDS |
| GCTGAATCACCAACAACAAG+AGG | 0.587185 | 1.4:-29576373 | None:intergenic |
| GGTGACGAGGGGTCTTGCGG+CGG | 0.587727 | 1.4:-29575918 | None:intergenic |
| GTCCCACCTCCGGCAACGCG+AGG | 0.589552 | 1.4:-29576151 | None:intergenic |
| CATTTCCGCCAGATTCTGGT+CGG | 0.592465 | 1.4:-29576232 | None:intergenic |
| GGTTCCCCATGATTCGGCGG+AGG | 0.593131 | 1.4:-29576107 | None:intergenic |
| TGCCAAGACTGCTAAGAGGA+TGG | 0.598875 | 1.4:+29576918 | MS.gene053467:CDS |
| CGTATTCCTCGCGTTGCCGG+AGG | 0.602014 | 1.4:+29576145 | MS.gene053467:CDS |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1.4:-29576364 | None:intergenic |
| GAGTGTTTGGACGGTGACGA+GGG | 0.611335 | 1.4:-29575930 | None:intergenic |
| TATTGAAACTTGCACCTGGT+GGG | 0.615402 | 1.4:+29576635 | MS.gene053467:CDS |
| AAGGTAAGATGCGTAACCGT+AGG | 0.626245 | 1.4:+29576500 | MS.gene053467:CDS |
| AATTTGACAACTTCTCCAAG+TGG | 0.627357 | 1.4:+29578492 | MS.gene053467:CDS |
| TTGAGATTACTAATGTTGAG+AGG | 0.628464 | 1.4:+29576605 | MS.gene053467:CDS |
| CCAAACACTCGATTCCGACA+TGG | 0.630593 | 1.4:+29575943 | MS.gene053467:CDS |
| CTATTGAAACTTGCACCTGG+TGG | 0.636819 | 1.4:+29576634 | MS.gene053467:CDS |
| ACCGGTTCCCCATGATTCGG+CGG | 0.641265 | 1.4:-29576110 | None:intergenic |
| TTCGGTAACATGTGCCGTGG+TGG | 0.641371 | 1.4:+29576196 | MS.gene053467:CDS |
| TAGGATTATTAACAGTGATG+AGG | 0.647484 | 1.4:+29576795 | MS.gene053467:CDS |
| TCGGTGCCATAAACAATCAA+CGG | 0.649658 | 1.4:-29576541 | None:intergenic |
| AATCTATTGAAACTTGCACC+TGG | 0.652549 | 1.4:+29576631 | MS.gene053467:CDS |
| CGAAAGCAGCTTGACCAGCA+CGG | 0.654853 | 1.4:-29576177 | None:intergenic |
| CAAACCTCCGCCGAATCATG+GGG | 0.657818 | 1.4:+29576103 | MS.gene053467:CDS |
| AGTGTTTGGACGGTGACGAG+GGG | 0.664474 | 1.4:-29575929 | None:intergenic |
| CCACGAGCAAGAACAAGCGA+AGG | 0.669367 | 1.4:-29576322 | None:intergenic |
| TTGAAGCTCGCATTACATCG+GGG | 0.675972 | 1.4:-29575994 | None:intergenic |
| CGAAGTTGACGATATCGGGA+CGG | 0.678874 | 1.4:-29576018 | None:intergenic |
| ACATTAGTAATCTCAACACC+AGG | 0.679853 | 1.4:-29576598 | None:intergenic |
| GAGGGAGGTTGATGAATCGG+TGG | 0.686595 | 1.4:-29575966 | None:intergenic |
| CGAGTCTTGGGATTCGACCG+GGG | 0.689790 | 1.4:+29576476 | MS.gene053467:CDS |
| AAGCAGCTTGACCAGCACGG+TGG | 0.692670 | 1.4:-29576174 | None:intergenic |
| TTGCTCCGACCAGAATCTGG+CGG | 0.699404 | 1.4:+29576227 | MS.gene053467:CDS |
| ATGAGGTGCAGAGTGTTGTG+AGG | 0.702312 | 1.4:+29576812 | MS.gene053467:CDS |
| GCTTTCGGTAACATGTGCCG+TGG | 0.703272 | 1.4:+29576193 | MS.gene053467:CDS |
| GAGCAAACATACGACCACCA+CGG | 0.745806 | 1.4:-29576210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAATGAACAATATT+GGG | - | chr1.4:29578369-29578388 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAATGAACAATAT+TGG | - | chr1.4:29578370-29578389 | None:intergenic | 10.0% |
| !! | AATCATATTCCATTTACAAA+AGG | + | chr1.4:29577943-29577962 | MS.gene053467:intron | 20.0% |
| !! | ATAACATTAAGATTCTTAAG+AGG | - | chr1.4:29576880-29576899 | None:intergenic | 20.0% |
| !! | TAGTAAGTTAGATAGAAATA+TGG | + | chr1.4:29577975-29577994 | MS.gene053467:intron | 20.0% |
| ! | ATACCAAACAGAAATGTAAA+TGG | - | chr1.4:29578094-29578113 | None:intergenic | 25.0% |
| ! | CAATTAGCACATAATTTCTA+AGG | - | chr1.4:29577257-29577276 | None:intergenic | 25.0% |
| ! | CGTAATACTAGAAACAAAAT+AGG | - | chr1.4:29577147-29577166 | None:intergenic | 25.0% |
| ! | TTCTTCAAATGATGCAATTA+AGG | + | chr1.4:29577877-29577896 | MS.gene053467:intron | 25.0% |
| ! | TTTCCATTTACATTTCTGTT+TGG | + | chr1.4:29578088-29578107 | MS.gene053467:intron | 25.0% |
| !! | TATGTCTTTATGACAACTTT+TGG | + | chr1.4:29578153-29578172 | MS.gene053467:intron | 25.0% |
| !!! | ATTAGTGTTTTGAAGAAGAT+TGG | + | chr1.4:29576424-29576443 | MS.gene053467:CDS | 25.0% |
| !!! | ATTTTGGTGTTTCATTTTGT+GGG | + | chr1.4:29577099-29577118 | MS.gene053467:intron | 25.0% |
| !!! | CTTGTATGCATATTTGATTT+TGG | + | chr1.4:29577083-29577102 | MS.gene053467:intron | 25.0% |
| ATTCAAATCAAAGTGCAACT+AGG | - | chr1.4:29577194-29577213 | None:intergenic | 30.0% | |
| CATTAACTGCAATTCAATAG+AGG | - | chr1.4:29578229-29578248 | None:intergenic | 30.0% | |
| CTATCTAACTTACTAATCTC+TGG | - | chr1.4:29577970-29577989 | None:intergenic | 30.0% | |
| TAGGATTATTAACAGTGATG+AGG | + | chr1.4:29576795-29576814 | MS.gene053467:CDS | 30.0% | |
| TATAGAATAGGCTGCTATTA+CGG | + | chr1.4:29577694-29577713 | MS.gene053467:intron | 30.0% | |
| TGGTTAATTCAGATTTGACT+AGG | + | chr1.4:29576776-29576795 | MS.gene053467:CDS | 30.0% | |
| TTATAACGTCGTTTGATCAA+TGG | + | chr1.4:29578012-29578031 | MS.gene053467:intron | 30.0% | |
| TTGAGATTACTAATGTTGAG+AGG | + | chr1.4:29576605-29576624 | MS.gene053467:CDS | 30.0% | |
| ! | AGAAACTTGATTCGATTTAC+GGG | + | chr1.4:29576698-29576717 | MS.gene053467:CDS | 30.0% |
| ! | AGCTTTTGTGAACATCATTT+AGG | - | chr1.4:29577427-29577446 | None:intergenic | 30.0% |
| ! | ATTTACGGGACTTTTGATAA+GGG | + | chr1.4:29576712-29576731 | MS.gene053467:CDS | 30.0% |
| ! | GAGAAACTTGATTCGATTTA+CGG | + | chr1.4:29576697-29576716 | MS.gene053467:CDS | 30.0% |
| ! | TATTTTCCTTTGTTCCTTTC+AGG | + | chr1.4:29578397-29578416 | MS.gene053467:intron | 30.0% |
| ! | TGAACTGAGTTTTACTTTAC+TGG | + | chr1.4:29577592-29577611 | MS.gene053467:intron | 30.0% |
| !! | AAAGCTTTTAGGAATATACC+TGG | + | chr1.4:29576580-29576599 | MS.gene053467:CDS | 30.0% |
| !! | GTTTGTTGTTTGGACTAAAT+CGG | + | chr1.4:29576669-29576688 | MS.gene053467:CDS | 30.0% |
| !!! | GATTTTGGTGTTTCATTTTG+TGG | + | chr1.4:29577098-29577117 | MS.gene053467:intron | 30.0% |
| !!! | TCTGATTCACATTGATTTTC+CGG | - | chr1.4:29576261-29576280 | None:intergenic | 30.0% |
| AAAAGCTTGGTACAACACTA+TGG | + | chr1.4:29578448-29578467 | MS.gene053467:CDS | 35.0% | |
| AACCAATCCTTATGTGACTA+AGG | - | chr1.4:29578048-29578067 | None:intergenic | 35.0% | |
| AATCTATTGAAACTTGCACC+TGG | + | chr1.4:29576631-29576650 | MS.gene053467:CDS | 35.0% | |
| AATTTGACAACTTCTCCAAG+TGG | + | chr1.4:29578492-29578511 | MS.gene053467:CDS | 35.0% | |
| ACATTAGTAATCTCAACACC+AGG | - | chr1.4:29576601-29576620 | None:intergenic | 35.0% | |
| ACCAATCCTTATGTGACTAA+GGG | - | chr1.4:29578047-29578066 | None:intergenic | 35.0% | |
| ACTGTGATACATAACACTAG+AGG | - | chr1.4:29577468-29577487 | None:intergenic | 35.0% | |
| AGTTAGTGCTGTCAAATAGA+TGG | + | chr1.4:29577667-29577686 | MS.gene053467:intron | 35.0% | |
| CAATAGAGGATAATCGAAAG+TGG | - | chr1.4:29578215-29578234 | None:intergenic | 35.0% | |
| CGCTTAACATCCTTCTTAAT+CGG | - | chr1.4:29576838-29576857 | None:intergenic | 35.0% | |
| GGTTTCATTGACATGTGTTT+AGG | + | chr1.4:29577613-29577632 | MS.gene053467:intron | 35.0% | |
| TCTAGTGTTATGTATCACAG+TGG | + | chr1.4:29577467-29577486 | MS.gene053467:intron | 35.0% | |
| TGAAGGAGTAGAGAAAACTA+AGG | + | chr1.4:29576396-29576415 | MS.gene053467:CDS | 35.0% | |
| ! | AAAGGACCGTTGATTGTTTA+TGG | + | chr1.4:29576535-29576554 | MS.gene053467:CDS | 35.0% |
| ! | ATAGATGGTGGCTATAGAAT+AGG | + | chr1.4:29577682-29577701 | MS.gene053467:intron | 35.0% |
| ! | ATCTCTGGACCTTTTGTAAA+TGG | - | chr1.4:29577955-29577974 | None:intergenic | 35.0% |
| ! | ATGTTTCTGTGTTCTCTCTT+AGG | + | chr1.4:29578336-29578355 | MS.gene053467:intron | 35.0% |
| ! | CTTTTCGCGATATATACCTA+CGG | - | chr1.4:29576519-29576538 | None:intergenic | 35.0% |
| ! | GATTTACGGGACTTTTGATA+AGG | + | chr1.4:29576711-29576730 | MS.gene053467:CDS | 35.0% |
| ! | TTCCAAGTATTGTCAACTAG+TGG | + | chr1.4:29577727-29577746 | MS.gene053467:intron | 35.0% |
| !! | AGAAAGGGTATGTTTTACCT+AGG | + | chr1.4:29576746-29576765 | MS.gene053467:CDS | 35.0% |
| !! | AGTTTTTGGAGATGTTGGAA+TGG | - | chr1.4:29576045-29576064 | None:intergenic | 35.0% |
| !! | ATTTGGGTAGGTTTGTTGTT+TGG | + | chr1.4:29576659-29576678 | MS.gene053467:CDS | 35.0% |
| !! | GAAAGGGTATGTTTTACCTA+GGG | + | chr1.4:29576747-29576766 | MS.gene053467:CDS | 35.0% |
| AACCAGTTGGACACTCTATT+TGG | + | chr1.4:29577307-29577326 | MS.gene053467:intron | 40.0% | |
| AAGGGTAGTGAGAAGAAGAA+AGG | + | chr1.4:29576730-29576749 | MS.gene053467:CDS | 40.0% | |
| ACCAGTTGGACACTCTATTT+GGG | + | chr1.4:29577308-29577327 | MS.gene053467:intron | 40.0% | |
| AGGAGAAGCTTGATAAGAAG+AGG | + | chr1.4:29576977-29576996 | MS.gene053467:CDS | 40.0% | |
| AGGGTAGTGAGAAGAAGAAA+GGG | + | chr1.4:29576731-29576750 | MS.gene053467:CDS | 40.0% | |
| ATGGACGAAGTTGACGATAT+CGG | - | chr1.4:29576026-29576045 | None:intergenic | 40.0% | |
| ATTGAAGCTCGCATTACATC+GGG | - | chr1.4:29575998-29576017 | None:intergenic | 40.0% | |
| ATTGGCATTGCTATGAAACC+GGG | - | chr1.4:29577837-29577856 | None:intergenic | 40.0% | |
| CAATCCTTATGTGACTAAGG+GGG | - | chr1.4:29578045-29578064 | None:intergenic | 40.0% | |
| CACCACTAGTTGACAATACT+TGG | - | chr1.4:29577732-29577751 | None:intergenic | 40.0% | |
| CATTGGCATTGCTATGAAAC+CGG | - | chr1.4:29577838-29577857 | None:intergenic | 40.0% | |
| CCAATCCTTATGTGACTAAG+GGG | - | chr1.4:29578046-29578065 | None:intergenic | 40.0% | |
| CGTAGGTATATATCGCGAAA+AGG | + | chr1.4:29576517-29576536 | MS.gene053467:CDS | 40.0% | |
| GAATTAACCATCTTAGCCCT+AGG | - | chr1.4:29576766-29576785 | None:intergenic | 40.0% | |
| GATAATCGAAAGTGGAGCAT+CGG | - | chr1.4:29578207-29578226 | None:intergenic | 40.0% | |
| GATTGAAGCTCGCATTACAT+CGG | - | chr1.4:29575999-29576018 | None:intergenic | 40.0% | |
| TAGTGCTGTCAAATAGATGG+TGG | + | chr1.4:29577670-29577689 | MS.gene053467:intron | 40.0% | |
| TATTGAAACTTGCACCTGGT+GGG | + | chr1.4:29576635-29576654 | MS.gene053467:CDS | 40.0% | |
| TTGGTACAACACTATGGTCT+CGG | + | chr1.4:29578454-29578473 | MS.gene053467:CDS | 40.0% | |
| TTTCCTTTGTTCCTTTCAGG+AGG | + | chr1.4:29578400-29578419 | MS.gene053467:intron | 40.0% | |
| ! | CGAAAGCAGTCAAAGCTTTT+AGG | + | chr1.4:29576569-29576588 | MS.gene053467:CDS | 40.0% |
| ! | TGTTTTACCTAGGGCTAAGA+TGG | + | chr1.4:29576756-29576775 | MS.gene053467:CDS | 40.0% |
| ! | TTGATTGTTTATGGCACCGA+AGG | + | chr1.4:29576544-29576563 | MS.gene053467:CDS | 40.0% |
| !! | GAAGAGGAAGACTGTTTCTA+AGG | + | chr1.4:29576993-29577012 | MS.gene053467:CDS | 40.0% |
| !! | GTCACATAAGGATTGGTTGT+TGG | + | chr1.4:29578050-29578069 | MS.gene053467:intron | 40.0% |
| !! | TCGGTGCCATAAACAATCAA+CGG | - | chr1.4:29576544-29576563 | None:intergenic | 40.0% |
| AAGGTAAGATGCGTAACCGT+AGG | + | chr1.4:29576500-29576519 | MS.gene053467:CDS | 45.0% | |
| ACACTAGAGGAAGTCTTGCT+TGG | - | chr1.4:29577455-29577474 | None:intergenic | 45.0% | |
| AGAAAGCGAAAGCGAGTCTT+GGG | + | chr1.4:29576464-29576483 | MS.gene053467:CDS | 45.0% | |
| CACAACAGAACGAAGCACAT+TGG | - | chr1.4:29577855-29577874 | None:intergenic | 45.0% | |
| CATACAATCTCTGATGACCC+CGG | + | chr1.4:29577816-29577835 | MS.gene053467:intron | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | - | chr1.4:29576367-29576386 | None:intergenic | 45.0% | |
| CCCCTTAGTCACATAAGGAT+TGG | + | chr1.4:29578043-29578062 | MS.gene053467:intron | 45.0% | |
| CTATTGAAACTTGCACCTGG+TGG | + | chr1.4:29576634-29576653 | MS.gene053467:CDS | 45.0% | |
| CTCTTAGCAGTCTTGGCATA+AGG | - | chr1.4:29576916-29576935 | None:intergenic | 45.0% | |
| CTTATGCCAAGACTGCTAAG+AGG | + | chr1.4:29576914-29576933 | MS.gene053467:CDS | 45.0% | |
| CTTATGTGACTAAGGGGGAT+CGG | - | chr1.4:29578040-29578059 | None:intergenic | 45.0% | |
| CTTCCTCCTGAAAGGAACAA+AGG | - | chr1.4:29578406-29578425 | None:intergenic | 45.0% | |
| GACAACTTCTCCAAGTGGTT+GGG | + | chr1.4:29578497-29578516 | MS.gene053467:CDS | 45.0% | |
| GCTGAATCACCAACAACAAG+AGG | - | chr1.4:29576376-29576395 | None:intergenic | 45.0% | |
| TACATGCATGCACAACCAGT+TGG | + | chr1.4:29577294-29577313 | MS.gene053467:intron | 45.0% | |
| TGACAACTTCTCCAAGTGGT+TGG | + | chr1.4:29578496-29578515 | MS.gene053467:CDS | 45.0% | |
| TGAGAGGGTTAAGGCTAAGA+AGG | + | chr1.4:29576957-29576976 | MS.gene053467:CDS | 45.0% | |
| TGGACGAAGTTGACGATATC+GGG | - | chr1.4:29576025-29576044 | None:intergenic | 45.0% | |
| TGTTGTGAGGCCGATTAAGA+AGG | + | chr1.4:29576825-29576844 | MS.gene053467:CDS | 45.0% | |
| TTAAGGCAGCTGGAAAAGCT+TGG | + | chr1.4:29578435-29578454 | MS.gene053467:CDS | 45.0% | |
| TTACGCATCTTACCTTTCCC+CGG | - | chr1.4:29576496-29576515 | None:intergenic | 45.0% | |
| TTGAAGCTCGCATTACATCG+GGG | - | chr1.4:29575997-29576016 | None:intergenic | 45.0% | |
| TTGGCATTGCTATGAAACCG+GGG | - | chr1.4:29577836-29577855 | None:intergenic | 45.0% | |
| TTGTTCTTGCTCGTGGTCAT+AGG | + | chr1.4:29576329-29576348 | MS.gene053467:CDS | 45.0% | |
| TTTGACTGCTTTCGCACCTT+CGG | - | chr1.4:29576563-29576582 | None:intergenic | 45.0% | |
| ! | AGCTTTTCCAGCTGCCTTAA+TGG | - | chr1.4:29578435-29578454 | None:intergenic | 45.0% |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | + | chr1.4:29576364-29576383 | MS.gene053467:CDS | 45.0% |
| !! | GTTGTTGGTGATTCAGCTGA+AGG | + | chr1.4:29576379-29576398 | MS.gene053467:CDS | 45.0% |
| !! | TCGGGAGTTTTTGGAGATGT+TGG | - | chr1.4:29576050-29576069 | None:intergenic | 45.0% |
| !! | TGGAGCATCGGTTGCAATTA+AGG | - | chr1.4:29578195-29578214 | None:intergenic | 45.0% |
| !! | TGTGAATCAGAAGCGTTTCG+CGG | + | chr1.4:29576270-29576289 | MS.gene053467:CDS | 45.0% |
| AGCCATCCTCTTAGCAGTCT+TGG | - | chr1.4:29576923-29576942 | None:intergenic | 50.0% | |
| CATTACATCGGGGATTGGGA+GGG | - | chr1.4:29575987-29576006 | None:intergenic | 50.0% | |
| CATTTCCGCCAGATTCTGGT+CGG | - | chr1.4:29576235-29576254 | None:intergenic | 50.0% | |
| CCAAACACTCGATTCCGACA+TGG | + | chr1.4:29575943-29575962 | MS.gene053467:CDS | 50.0% | |
| CCATGTCGGAATCGAGTGTT+TGG | - | chr1.4:29575946-29575965 | None:intergenic | 50.0% | |
| CGAAGTTGACGATATCGGGA+CGG | - | chr1.4:29576021-29576040 | None:intergenic | 50.0% | |
| CGATCCCCCTTAGTCACATA+AGG | + | chr1.4:29578038-29578057 | MS.gene053467:intron | 50.0% | |
| CTCGCATTACATCGGGGATT+GGG | - | chr1.4:29575991-29576010 | None:intergenic | 50.0% | |
| CTGTGAAACACCCAACCACT+TGG | - | chr1.4:29578510-29578529 | None:intergenic | 50.0% | |
| GAGAAAGCGAAAGCGAGTCT+TGG | + | chr1.4:29576463-29576482 | MS.gene053467:CDS | 50.0% | |
| GAGCAAACATACGACCACCA+CGG | - | chr1.4:29576213-29576232 | None:intergenic | 50.0% | |
| GCTACTGCTCTGTATCGTAG+TGG | + | chr1.4:29577751-29577770 | MS.gene053467:intron | 50.0% | |
| GGAGGAAGCTTCTGCCATTA+AGG | + | chr1.4:29578418-29578437 | MS.gene053467:intron | 50.0% | |
| GTCGGAATCGAGTGTTTGGA+CGG | - | chr1.4:29575942-29575961 | None:intergenic | 50.0% | |
| TGATGAATCGGTGGCCATGT+CGG | - | chr1.4:29575960-29575979 | None:intergenic | 50.0% | |
| TGCCAAGACTGCTAAGAGGA+TGG | + | chr1.4:29576918-29576937 | MS.gene053467:CDS | 50.0% | |
| TGTTTGCTCCGACCAGAATC+TGG | + | chr1.4:29576224-29576243 | MS.gene053467:CDS | 50.0% | |
| ! | GAAGCGTTTCGCGGTTGTTT+CGG | + | chr1.4:29576279-29576298 | MS.gene053467:CDS | 50.0% |
| ! | GCCCAAATAGAGTGTCCAAC+TGG | - | chr1.4:29577312-29577331 | None:intergenic | 50.0% |
| ! | GTACGGTTGTCGGGAGTTTT+TGG | - | chr1.4:29576059-29576078 | None:intergenic | 50.0% |
| ! | TTTGCTTGCTGAGGCTGAGA+GGG | + | chr1.4:29576942-29576961 | MS.gene053467:CDS | 50.0% |
| !! | ATGAGGTGCAGAGTGTTGTG+AGG | + | chr1.4:29576812-29576831 | MS.gene053467:CDS | 50.0% |
| !! | TGGGAGGGAGGTTGATGAAT+CGG | - | chr1.4:29575972-29575991 | None:intergenic | 50.0% |
| AACCTACCCAAATGCCCACC+AGG | - | chr1.4:29576652-29576671 | None:intergenic | 55.0% | |
| AACGCGAGGAATACGGGAGA+CGG | - | chr1.4:29576140-29576159 | None:intergenic | 55.0% | |
| ACCAAACCTCCGCCGAATCA+TGG | + | chr1.4:29576101-29576120 | MS.gene053467:CDS | 55.0% | |
| AGCGAGTCTTGGGATTCGAC+CGG | + | chr1.4:29576474-29576493 | MS.gene053467:CDS | 55.0% | |
| AGTGTTTGGACGGTGACGAG+GGG | - | chr1.4:29575932-29575951 | None:intergenic | 55.0% | |
| CAAACCTCCGCCGAATCATG+GGG | + | chr1.4:29576103-29576122 | MS.gene053467:CDS | 55.0% | |
| CCAAACCTCCGCCGAATCAT+GGG | + | chr1.4:29576102-29576121 | MS.gene053467:CDS | 55.0% | |
| CCACGAGCAAGAACAAGCGA+AGG | - | chr1.4:29576325-29576344 | None:intergenic | 55.0% | |
| CCTTCGCTTGTTCTTGCTCG+TGG | + | chr1.4:29576322-29576341 | MS.gene053467:CDS | 55.0% | |
| CGAAAGCAGCTTGACCAGCA+CGG | - | chr1.4:29576180-29576199 | None:intergenic | 55.0% | |
| CGACCAGAATCTGGCGGAAA+TGG | + | chr1.4:29576233-29576252 | MS.gene053467:CDS | 55.0% | |
| GAATCTGGCGGAAATGGCAC+CGG | + | chr1.4:29576239-29576258 | MS.gene053467:CDS | 55.0% | |
| GAGTGTTTGGACGGTGACGA+GGG | - | chr1.4:29575933-29575952 | None:intergenic | 55.0% | |
| GCATTACATCGGGGATTGGG+AGG | - | chr1.4:29575988-29576007 | None:intergenic | 55.0% | |
| GCTCGCATTACATCGGGGAT+TGG | - | chr1.4:29575992-29576011 | None:intergenic | 55.0% | |
| GCTTCTGCCATTAAGGCAGC+TGG | + | chr1.4:29578425-29578444 | MS.gene053467:CDS | 55.0% | |
| GCTTTCGGTAACATGTGCCG+TGG | + | chr1.4:29576193-29576212 | MS.gene053467:CDS | 55.0% | |
| GGCAGAAGCTTCCTCCTGAA+AGG | - | chr1.4:29578414-29578433 | None:intergenic | 55.0% | |
| TGCTGAGGCTGAGAGGGTTA+AGG | + | chr1.4:29576948-29576967 | MS.gene053467:CDS | 55.0% | |
| TTCGGTAACATGTGCCGTGG+TGG | + | chr1.4:29576196-29576215 | MS.gene053467:CDS | 55.0% | |
| TTGCTCCGACCAGAATCTGG+CGG | + | chr1.4:29576227-29576246 | MS.gene053467:CDS | 55.0% | |
| ! | ACGACCGGTTCCCCATGATT+CGG | - | chr1.4:29576116-29576135 | None:intergenic | 55.0% |
| ! | ACTTGCACCTGGTGGGCATT+TGG | + | chr1.4:29576642-29576661 | MS.gene053467:CDS | 55.0% |
| ! | ATGATTCGGCGGAGGTTTGG+TGG | - | chr1.4:29576102-29576121 | None:intergenic | 55.0% |
| ! | CGTGCTGGTCAAGCTGCTTT+CGG | + | chr1.4:29576178-29576197 | MS.gene053467:CDS | 55.0% |
| ! | CTTGCACCTGGTGGGCATTT+GGG | + | chr1.4:29576643-29576662 | MS.gene053467:CDS | 55.0% |
| ! | CTTTGCTTGCTGAGGCTGAG+AGG | + | chr1.4:29576941-29576960 | MS.gene053467:CDS | 55.0% |
| ! | GAGGATGGCTTTGCTTGCTG+AGG | + | chr1.4:29576933-29576952 | MS.gene053467:CDS | 55.0% |
| !! | AGGTTTGGTGGCCGGCTTTA+CGG | - | chr1.4:29576090-29576109 | None:intergenic | 55.0% |
| !! | GAGGGAGGTTGATGAATCGG+TGG | - | chr1.4:29575969-29575988 | None:intergenic | 55.0% |
| !! | GTGCCATTTCCGCCAGATTC+TGG | - | chr1.4:29576239-29576258 | None:intergenic | 55.0% |
| AAGCAGCTTGACCAGCACGG+TGG | - | chr1.4:29576177-29576196 | None:intergenic | 60.0% | |
| AATACGGGAGACGGCACGAC+CGG | - | chr1.4:29576131-29576150 | None:intergenic | 60.0% | |
| AGCAGCTTGACCAGCACGGT+GGG | - | chr1.4:29576176-29576195 | None:intergenic | 60.0% | |
| CGAGTCTTGGGATTCGACCG+GGG | + | chr1.4:29576476-29576495 | MS.gene053467:CDS | 60.0% | |
| CGAGTGTTTGGACGGTGACG+AGG | - | chr1.4:29575934-29575953 | None:intergenic | 60.0% | |
| CTCCGGCAACGCGAGGAATA+CGG | - | chr1.4:29576147-29576166 | None:intergenic | 60.0% | |
| CTTGGGATTCGACCGGGGAA+AGG | + | chr1.4:29576481-29576500 | MS.gene053467:CDS | 60.0% | |
| GCGAGTCTTGGGATTCGACC+GGG | + | chr1.4:29576475-29576494 | MS.gene053467:CDS | 60.0% | |
| GCTTTACGGCTGACGGCGTA+CGG | - | chr1.4:29576076-29576095 | None:intergenic | 60.0% | |
| TACATCGGGGATTGGGAGGG+AGG | - | chr1.4:29575984-29576003 | None:intergenic | 60.0% | |
| TACGCCGTCAGCCGTAAAGC+CGG | + | chr1.4:29576076-29576095 | MS.gene053467:CDS | 60.0% | |
| TCCCGTATTCCTCGCGTTGC+CGG | + | chr1.4:29576142-29576161 | MS.gene053467:CDS | 60.0% | |
| TCCGCCGAATCATGGGGAAC+CGG | + | chr1.4:29576109-29576128 | MS.gene053467:CDS | 60.0% | |
| TCCGGCAACGCGAGGAATAC+GGG | - | chr1.4:29576146-29576165 | None:intergenic | 60.0% | |
| ! | ACCGGTTCCCCATGATTCGG+CGG | - | chr1.4:29576113-29576132 | None:intergenic | 60.0% |
| ! | CACCTGGTGGGCATTTGGGT+AGG | + | chr1.4:29576647-29576666 | MS.gene053467:CDS | 60.0% |
| ! | CCCATGATTCGGCGGAGGTT+TGG | - | chr1.4:29576105-29576124 | None:intergenic | 60.0% |
| ATTCCTCGCGTTGCCGGAGG+TGG | + | chr1.4:29576148-29576167 | MS.gene053467:CDS | 65.0% | |
| CGTATTCCTCGCGTTGCCGG+AGG | + | chr1.4:29576145-29576164 | MS.gene053467:CDS | 65.0% | |
| GACGGTGACGAGGGGTCTTG+CGG | - | chr1.4:29575924-29575943 | None:intergenic | 65.0% | |
| GCTGACGGCGTACGGTTGTC+GGG | - | chr1.4:29576068-29576087 | None:intergenic | 65.0% | |
| GGCTGACGGCGTACGGTTGT+CGG | - | chr1.4:29576069-29576088 | None:intergenic | 65.0% | |
| TTCCTCGCGTTGCCGGAGGT+GGG | + | chr1.4:29576149-29576168 | MS.gene053467:CDS | 65.0% | |
| ! | GGTTCCCCATGATTCGGCGG+AGG | - | chr1.4:29576110-29576129 | None:intergenic | 65.0% |
| ! | GTGGCCGGCTTTACGGCTGA+CGG | - | chr1.4:29576083-29576102 | None:intergenic | 65.0% |
| !! | TTCGGCGGAGGTTTGGTGGC+CGG | - | chr1.4:29576098-29576117 | None:intergenic | 65.0% |
| AGCACGGTGGGTCCCACCTC+CGG | - | chr1.4:29576164-29576183 | None:intergenic | 70.0% | |
| GGTGACGAGGGGTCTTGCGG+CGG | - | chr1.4:29575921-29575940 | None:intergenic | 70.0% | |
| GACGAGGGGTCTTGCGGCGG+CGG | - | chr1.4:29575918-29575937 | None:intergenic | 75.0% | |
| GGAGGTGGGACCCACCGTGC+TGG | + | chr1.4:29576163-29576182 | MS.gene053467:CDS | 75.0% | |
| GTCCCACCTCCGGCAACGCG+AGG | - | chr1.4:29576154-29576173 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29575908 | 29578532 | 29575908 | ID=MS.gene053467 |
| chr1.4 | mRNA | 29575908 | 29578532 | 29575908 | ID=MS.gene053467.t1;Parent=MS.gene053467 |
| chr1.4 | exon | 29575908 | 29577014 | 29575908 | ID=MS.gene053467.t1.exon1;Parent=MS.gene053467.t1 |
| chr1.4 | CDS | 29575908 | 29577014 | 29575908 | ID=cds.MS.gene053467.t1;Parent=MS.gene053467.t1 |
| chr1.4 | exon | 29578419 | 29578532 | 29578419 | ID=MS.gene053467.t1.exon2;Parent=MS.gene053467.t1 |
| chr1.4 | CDS | 29578419 | 29578532 | 29578419 | ID=cds.MS.gene053467.t1;Parent=MS.gene053467.t1 |
| Gene Sequence |
| Protein sequence |
